RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-001 4.4.0-45-generic #66+buildd2-Ubuntu SMP Fri Oct 21 06:29:15 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.5. Syncing the system clock with the buildd NTP service... 22 Oct 02:33:20 ntpdate[1730]: adjust time server 10.211.37.1 offset 0.112668 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11057679', '/home/buildd/filecache-default/0309f704a9139dce864b78599cddd58acb3f260a'] Unpacking chroot for build PACKAGEBUILD-11057679 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11057679'] Mounting chroot for build PACKAGEBUILD-11057679 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11057679', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11057679 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11057679', 'arm64'] Updating debian chroot for build PACKAGEBUILD-11057679 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 Packages [1186 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [583 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe arm64 Packages [7501 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4488 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 Packages [37.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [25.9 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 Packages [199 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [93.6 kB] Fetched 14.6 MB in 4s (3071 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files binutils cpp-6 dmsetup g++-6 gcc-6 gcc-6-base libapparmor1 libasan3 libasn1-8-heimdal libatomic1 libcc1-0 libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal liblzma5 libroken18-heimdal libstdc++-6-dev libstdc++6 libubsan0 libwind0-heimdal linux-libc-dev tzdata xz-utils 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 24.2 MB of archives. After this operation, 324 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main arm64 base-files arm64 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 libgomp1 arm64 6.2.0-8ubuntu1 [61.7 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 libitm1 arm64 6.2.0-8ubuntu1 [25.2 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 libcc1-0 arm64 6.2.0-8ubuntu1 [27.7 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 libatomic1 arm64 6.2.0-8ubuntu1 [6628 B] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 libasan3 arm64 6.2.0-8ubuntu1 [267 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 libubsan0 arm64 6.2.0-8ubuntu1 [97.2 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main arm64 gcc-6-base arm64 6.2.0-8ubuntu1 [17.4 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main arm64 libstdc++6 arm64 6.2.0-8ubuntu1 [369 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main arm64 g++-6 arm64 6.2.0-8ubuntu1 [5884 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main arm64 libstdc++-6-dev arm64 6.2.0-8ubuntu1 [1384 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main arm64 libgcc-6-dev arm64 6.2.0-8ubuntu1 [557 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main arm64 gcc-6 arm64 6.2.0-8ubuntu1 [5738 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main arm64 cpp-6 arm64 6.2.0-8ubuntu1 [5155 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main arm64 libgcc1 arm64 1:6.2.0-8ubuntu1 [30.1 kB] Get:16 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 binutils arm64 2.27-9ubuntu1 [2497 kB] Get:17 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 liblzma5 arm64 5.2.2-1.2 [81.2 kB] Get:18 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 tzdata all 2016h-1 [169 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main arm64 libdevmapper1.02.1 arm64 2:1.02.133-1ubuntu1 [129 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main arm64 dmsetup arm64 2:1.02.133-1ubuntu1 [69.5 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main arm64 libapparmor1 arm64 2.10.95-4ubuntu5.1 [28.0 kB] Get:22 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libroken18-heimdal arm64 1.7~git20160703+dfsg-1 [34.4 kB] Get:23 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libasn1-8-heimdal arm64 1.7~git20160703+dfsg-1 [127 kB] Get:24 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libheimbase1-heimdal arm64 1.7~git20160703+dfsg-1 [24.2 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libhcrypto4-heimdal arm64 1.7~git20160703+dfsg-1 [73.1 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libwind0-heimdal arm64 1.7~git20160703+dfsg-1 [46.9 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libhx509-5-heimdal arm64 1.7~git20160703+dfsg-1 [86.2 kB] Get:28 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libkrb5-26-heimdal arm64 1.7~git20160703+dfsg-1 [162 kB] Get:29 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libheimntlm0-heimdal arm64 1.7~git20160703+dfsg-1 [13.1 kB] Get:30 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgssapi3-heimdal arm64 1.7~git20160703+dfsg-1 [76.9 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 xz-utils arm64 5.2.2-1.2 [79.1 kB] Get:32 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 linux-libc-dev arm64 4.8.0-26.28 [826 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.2 MB in 0s (24.7 MB/s) (Reading database ... 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Unpacking libgcc-6-dev:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../3-gcc-6_6.2.0-8ubuntu1_arm64.deb ... Unpacking gcc-6 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../4-cpp-6_6.2.0-8ubuntu1_arm64.deb ... Unpacking cpp-6 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../5-libgcc1_1%3a6.2.0-8ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:6.2.0-8ubuntu1) over (1:6.2.0-5ubuntu12) ... Setting up libgcc1:arm64 (1:6.2.0-8ubuntu1) ... (Reading database ... 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Unpacking xz-utils (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Preparing to unpack .../14-linux-libc-dev_4.8.0-26.28_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.8.0-26.28) over (4.8.0-22.24) ... Setting up libgomp1:arm64 (6.2.0-8ubuntu1) ... Setting up libatomic1:arm64 (6.2.0-8ubuntu1) ... Setting up libcc1-0:arm64 (6.2.0-8ubuntu1) ... Setting up libasan3:arm64 (6.2.0-8ubuntu1) ... Setting up tzdata (2016h-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 22 02:33:44 UTC 2016. Universal Time is now: Sat Oct 22 02:33:44 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libubsan0:arm64 (6.2.0-8ubuntu1) ... Setting up linux-libc-dev:arm64 (4.8.0-26.28) ... Setting up libroken18-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.133-1ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up libapparmor1:arm64 (2.10.95-4ubuntu5.1) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up dmsetup (2:1.02.133-1ubuntu1) ... Setting up binutils (2.27-9ubuntu1) ... Setting up cpp-6 (6.2.0-8ubuntu1) ... Setting up libitm1:arm64 (6.2.0-8ubuntu1) ... Setting up libgcc-6-dev:arm64 (6.2.0-8ubuntu1) ... Setting up libstdc++-6-dev:arm64 (6.2.0-8ubuntu1) ... Setting up libwind0-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libasn1-8-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libhcrypto4-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up gcc-6 (6.2.0-8ubuntu1) ... Setting up g++-6 (6.2.0-8ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11057679', 'arm64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=zesty-proposed', '--purge=never', '--nolog', 'tree-puzzle_5.2-8build2.dsc'] Initiating build PACKAGEBUILD-11057679 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-45-generic #66+buildd2-Ubuntu SMP Fri Oct 21 06:29:15 UTC 2016 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-001.buildd +==============================================================================+ | tree-puzzle 5.2-8build2 (arm64) 22 Oct 2016 02:33 | +==============================================================================+ Package: tree-puzzle Version: 5.2-8build2 Source Version: 5.2-8build2 Distribution: zesty-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/tree-puzzle-lS10Li/tree-puzzle-5.2' with '<>' I: NOTICE: Log filtering will replace 'build/tree-puzzle-lS10Li' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11057679/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- tree-puzzle_5.2-8build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BR8Jms/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-BR8Jms/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BR8Jms/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BR8Jms/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BR8Jms/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-BR8Jms/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (162 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BR8Jms/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: dh-autoreconf, debhelper (>= 9), libopenmpi-dev, libsprng2-dev Filtered Build-Depends: dh-autoreconf, debhelper (>= 9), libopenmpi-dev, libsprng2-dev dpkg-deb: building package 'sbuild-build-depends-tree-puzzle-dummy' in '/<>/resolver-MNMPMt/apt_archive/sbuild-build-depends-tree-puzzle-dummy.deb'. Ign:1 copy:/<>/resolver-MNMPMt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-MNMPMt/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-MNMPMt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-MNMPMt/apt_archive ./ Sources [241 B] Get:5 copy:/<>/resolver-MNMPMt/apt_archive ./ Packages [557 B] Fetched 2917 B in 0s (158 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install tree-puzzle build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libltdl-dev libltdl7 libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libsigsegv2 libsprng2 libsprng2-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gmp-doc libgmp10-doc libmpfr-dev libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils libsprng2-doc gfortran | fortran95-compiler gcj-jdk less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs openmpi-bin xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libltdl-dev libltdl7 libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libsigsegv2 libsprng2 libsprng2-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf sbuild-build-depends-tree-puzzle-dummy 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After this operation, 79.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-MNMPMt/apt_archive ./ sbuild-build-depends-tree-puzzle-dummy 0.invalid.0 [800 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 groff-base arm64 1.22.3-8 [1102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 bsdmainutils arm64 9.0.6ubuntu3 [170 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 man-db arm64 2.7.5-1 [832 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 libmagic1 arm64 1:5.28-2ubuntu1 [226 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main arm64 file arm64 1:5.28-2ubuntu1 [21.5 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext-base arm64 0.19.8.1-1ubuntu2 [45.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main arm64 libglib2.0-0 arm64 2.50.0-1 [946 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main arm64 libicu57 arm64 57.1-4 [7527 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main arm64 libnuma1 arm64 2.0.11-1ubuntu2 [18.1 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main arm64 libxml2 arm64 2.9.4+dfsg1-2 [569 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main arm64 libsigsegv2 arm64 2.10-5 [13.3 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main arm64 m4 arm64 1.4.17-5 [184 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main arm64 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main arm64 autotools-dev all 20160430.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main arm64 automake all 1:1.15-4ubuntu1 [510 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main arm64 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main arm64 libtool all 2.4.6-1 [194 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-autoreconf all 12 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main arm64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main arm64 libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-strip-nondeterminism all 0.028-1 [4820 B] Get:26 http://ftpmaster.internal/ubuntu zesty/main arm64 libcroco3 arm64 0.6.11-1 [66.0 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext arm64 0.19.8.1-1ubuntu2 [1012 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main arm64 po-debconf all 1.0.19 [234 kB] Get:30 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 debhelper all 10.2.2ubuntu1 [742 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main arm64 libgmpxx4ldbl arm64 2:6.1.1+dfsg-1 [8844 B] Get:32 http://ftpmaster.internal/ubuntu zesty/main arm64 libgmp-dev arm64 2:6.1.1+dfsg-1 [278 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main arm64 libltdl7 arm64 2.4.6-1 [35.8 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main arm64 libltdl-dev arm64 2.4.6-1 [160 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main arm64 libnl-3-200 arm64 3.2.27-1 [43.3 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main arm64 libnl-route-3-200 arm64 3.2.27-1 [97.3 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main arm64 libpciaccess0 arm64 0.13.4-1 [15.2 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/universe arm64 libsprng2 arm64 2.0a-10 [71.9 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/universe arm64 libsprng2-dev arm64 2.0a-10 [74.4 kB] Get:40 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 openmpi-common all 2.0.1-5ubuntu1 [134 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/universe arm64 libhwloc5 arm64 1.11.3-2 [79.3 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main arm64 libnuma-dev arm64 2.0.11-1ubuntu2 [30.2 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/universe arm64 libhwloc-dev arm64 1.11.3-2 [141 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main arm64 ocl-icd-libopencl1 arm64 2.2.9-2 [28.8 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/universe arm64 libhwloc-plugins arm64 1.11.3-2 [10.9 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main arm64 libibverbs1 arm64 1.2.0-2ubuntu1 [25.8 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main arm64 libibverbs-dev arm64 1.2.0-2ubuntu1 [82.1 kB] Get:48 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libopenmpi2 arm64 2.0.1-5ubuntu1 [1572 kB] Get:49 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libopenmpi-dev arm64 2.0.1-5ubuntu1 [905 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.4 MB in 1s (14.7 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-8_arm64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.6ubuntu3_arm64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../02-libpipeline1_1.4.1-2_arm64.deb ... 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Setting up libsigsegv2:arm64 (2.10-5) ... Setting up libsprng2 (2.0a-10) ... Setting up libnuma1:arm64 (2.0.11-1ubuntu2) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:arm64 (2.50.0-1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:arm64 (57.1-4) ... Setting up libxml2:arm64 (2.9.4+dfsg1-2) ... Setting up libmagic1:arm64 (1:5.28-2ubuntu1) ... Setting up libcroco3:arm64 (0.6.11-1) ... Setting up openmpi-common (2.0.1-5ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up libltdl7:arm64 (2.4.6-1) ... Setting up libpciaccess0:arm64 (0.13.4-1) ... Setting up libnuma-dev:arm64 (2.0.11-1ubuntu2) ... Setting up ocl-icd-libopencl1:arm64 (2.2.9-2) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:arm64 (2:6.1.1+dfsg-1) ... Setting up libnl-3-200:arm64 (3.2.27-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libgmp-dev:arm64 (2:6.1.1+dfsg-1) ... Setting up libltdl-dev:arm64 (2.4.6-1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libnl-route-3-200:arm64 (3.2.27-1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libhwloc5:arm64 (1.11.3-2) ... Setting up libhwloc-plugins (1.11.3-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libsprng2-dev (2.0a-10) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-1) ... Setting up libibverbs1 (1.2.0-2ubuntu1) ... Setting up po-debconf (1.0.19) ... Setting up libhwloc-dev:arm64 (1.11.3-2) ... Setting up libopenmpi2 (2.0.1-5ubuntu1) ... Setting up libibverbs-dev (1.2.0-2ubuntu1) ... Setting up libopenmpi-dev (2.0.1-5ubuntu1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up dh-strip-nondeterminism (0.028-1) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up dh-autoreconf (12) ... Setting up sbuild-build-depends-tree-puzzle-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-45-generic arm64 (aarch64) Toolchain package versions: binutils_2.27-9ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.0-8ubuntu1 gcc-6_6.2.0-8ubuntu1 libc6-dev_2.24-3ubuntu1 libstdc++-6-dev_6.2.0-8ubuntu1 libstdc++6_6.2.0-8ubuntu1 linux-libc-dev_4.8.0-26.28 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3.1 apt-transport-https_1.3.1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu6 base-passwd_3.5.40 bash_4.3-15ubuntu1 binutils_2.27-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-6_6.2.0-8ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.133-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-6_6.2.0-8ubuntu1 gcc_4:6.1.1-1ubuntu2 gcc-6_6.2.0-8ubuntu1 gcc-6-base_6.2.0-8ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.1 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-8ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libassuan0_2.4.3-1 libatomic1_6.2.0-8ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.28.2-1ubuntu1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-3ubuntu1 libc-dev-bin_2.24-3ubuntu1 libc6_2.24-3ubuntu1 libc6-dev_2.24-3ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.0-8ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.133-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.0-8ubuntu1 libgcc1_1:6.2.0-8ubuntu1 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libglib2.0-0_2.50.0-1 libgmp-dev_2:6.1.1+dfsg-1 libgmp10_2:6.1.1+dfsg-1 libgmpxx4ldbl_2:6.1.1+dfsg-1 libgnutls30_3.5.3-5ubuntu1 libgomp1_6.2.0-8ubuntu1 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhwloc-dev_1.11.3-2 libhwloc-plugins_1.11.3-2 libhwloc5_1.11.3-2 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libibverbs-dev_1.2.0-2ubuntu1 libibverbs1_1.2.0-2ubuntu1 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.0-8ubuntu1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.4-4 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 libltdl-dev_2.4.6-1 libltdl7_2.4.6-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libnpth0_1.2-3 libnuma-dev_2.0.11-1ubuntu2 libnuma1_2.0.11-1ubuntu2 libopenmpi-dev_2.0.1-5ubuntu1 libopenmpi2_2.0.1-5ubuntu1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpciaccess0_0.13.4-1 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng16-16_1.6.25-1 libprocps6_2:3.3.12-1ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.2-1ubuntu1 libsprng2_2.0a-10 libsprng2-dev_2.0a-10 libsqlite3-0_3.14.1-1build1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu9 libstdc++-6-dev_6.2.0-8ubuntu1 libstdc++6_6.2.0-8ubuntu1 libsystemd0_231-9git1 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libubsan0_6.2.0-8ubuntu1 libudev1_231-9git1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-2 linux-libc-dev_4.8.0-26.28 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28.2-1ubuntu1 multiarch-support_2.24-3ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.9-2 openmpi-common_2.0.1-5ubuntu1 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pinentry-curses_0.9.7-5 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tree-puzzle-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_231-9git1 systemd-sysv_231-9git1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016h-1 ubuntu-keyring_2016.09.19 util-linux_2.28.2-1ubuntu1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 22 01:56:51 2016 UTC gpgv: using RSA key gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tree-puzzle_5.2-8build2.dsc dpkg-source: info: extracting tree-puzzle in tree-puzzle-5.2 dpkg-source: info: unpacking tree-puzzle_5.2.orig.tar.gz dpkg-source: info: unpacking tree-puzzle_5.2-8build2.debian.tar.xz dpkg-source: info: applying 20_no_copy_of_sprng.patch dpkg-source: info: applying tests-need-bash.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package tree-puzzle dpkg-buildpackage: info: source version 5.2-8build2 dpkg-buildpackage: info: source distribution zesty dpkg-source --before-build tree-puzzle-5.2 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf dh_testdir dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a configure.ac:27: warning: underquoted definition of AC_TEST_MPICC configure.ac:27: run info Automake 'Extending aclocal' configure.ac:27: or see http://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:11: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:11: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:17: installing './compile' src/Makefile.am:45: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking target system type... aarch64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking whether gcc and cc understand -c and -o together... yes checking whether make sets $(MAKE)... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... /usr/bin/mpicc checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/mpicc works as MPI compiler... yes checking whether /usr/bin/mpicc handles quotes correctly... yes checking whether gcc handles quotes correctly... yes checking for main in -lm... yes checking for main in -lsprng... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-am make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o sgamma.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o sml1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o sml2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o smlparam.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o smodel1.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o smodel2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o spuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o spuzzle2.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o spstep.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o sutil.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o sconsensus.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o streesort.o gcc -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o streetest.o gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o -lsprng -lm -o puzzle /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./gamma.c && mv gamma.o pgamma.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml1.c && mv ml1.o pml1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ml2.c && mv ml2.o pml2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./mlparam.c && mv mlparam.o pmlparam.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model1.c && mv model1.o pmodel1.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./model2.c && mv model2.o pmodel2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle1.c && mv puzzle1.o ppuzzle1.o ./puzzle1.c: In function ‘readallquarts’: ./puzzle1.c:294:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "TREE-PUZZLE\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:295:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n\n", dummyversion); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:297:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "species: %d\n", &dummynspec); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:298:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "quartets: %lu\n", &dummynquart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:299:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "bytes: %lu\n\n", &dummyblocklen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:322:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ifp, "%s\n", dummyname); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:335:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&(quartetinfo[0]), sizeof(char), blocklen, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c: In function ‘setoptions’: ./puzzle1.c:718:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &locroot); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:776:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &fracinv); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:795:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Geta); ^~~~~~~~~~~~~~~~~~~ ./puzzle1.c:813:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numcats); ^~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:915:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &numclust); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1115:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &(Freqtpm[i])); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1149:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &Numtrial); ^~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1164:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lu", &lmqts); ^~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1181:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &outgroup); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1449:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &TSparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1478:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &YRparam); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1502:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &tstvf84); ^~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1515:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ACrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1524:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_AGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1533:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_ATrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1542:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CGrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1551:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_CTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./puzzle1.c:1560:8: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", >R_GTrate); ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./puzzle2.c && mv puzzle2.o ppuzzle2.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./pstep.c && mv pstep.o ppstep.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./sched.c && mv sched.o psched.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./util.c && mv util.o putil.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./consensus.c && mv consensus.o pconsensus.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treesort.c && mv treesort.o ptreesort.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./treetest.c && mv treetest.o ptreetest.o /usr/bin/mpicc -DPARALLEL -DHAVE_CONFIG_H -I. -I.. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ./ppuzzle.c ./ppuzzle.c: In function ‘PP_Update_EEI’: ./ppuzzle.c:300:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:302:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:304:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:306:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(3, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_Final_Update’: ./ppuzzle.c:344:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(DMVector[0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:346:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:348:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(fracinv), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:350:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:352:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:354:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:356:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(6, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSizes’: ./ppuzzle.c:722:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:723:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:725:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSizes’: ./ppuzzle.c:800:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:801:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:803:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Sizes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvData’: ./ppuzzle.c:892:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:894:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:896:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:898:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:900:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:902:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:904:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:906:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:908:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:910:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr[9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:912:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:914:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:916:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendData’: ./ppuzzle.c:987:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Seqpat[0][0]), &(Dtypeaddr[0])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:989:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Alias[0]), &(Dtypeaddr[1])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:991:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Weight[0]), &(Dtypeaddr[2])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:993:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(constpat[0]), &(Dtypeaddr[3])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:995:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Rates[0]), &(Dtypeaddr[4])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:997:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Eval[0]), &(Dtypeaddr[5])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:999:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Freqtpm[0]), &(Dtypeaddr[6])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1001:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Evec[0][0]), &(Dtypeaddr[7])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1003:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Ievc[0][0]), &(Dtypeaddr[8])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1005:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(iexp[0][0]), &(Dtypeaddr [9])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1007:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(Distanmat[0][0]), &(Dtypeaddr[10])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1009:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(ltprobr[0][0][0]), &(Dtypeaddr[11])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1011:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(12, Dtypelens, Dtypeaddr, Dtypes, &PP_Data); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuart’: ./ppuzzle.c:1153:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1154:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1156:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuart’: ./ppuzzle.c:1204:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1205:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1207:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Quart); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendQuartBlock’: ./ppuzzle.c:1371:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1372:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1374:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1387:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1390:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes + 1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1392:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvQuartBlock’: ./ppuzzle.c:1458:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ulis, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1459:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1461:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_QBlockSpecs); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c:1489:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(trueaddr, DtypeaddrRes); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1494:2: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(bq, (DtypeaddrRes+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1495:2: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, DtypelensRes, DtypeaddrRes, DtypesRes, &PP_QBlockRes); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendAllQuarts’: ./ppuzzle.c:1640:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1641:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvAllQuarts’: ./ppuzzle.c:1689:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(quartetinfo[0]), Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1690:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(1, Dtypelens, Dtypeaddr, Dtypes, &PP_AllQuarts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendSplitsBlock’: ./ppuzzle.c:1751:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(biparts[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1757:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address((*pstptr).tree, &(Dtypeaddr[(int)blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1767:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[((int)blocksize + pstnum)])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1769:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)blocksize + pstnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvSplitsBlock’: ./ppuzzle.c:1846:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&((*bip)[n][0][0]), &(Dtypeaddr[n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1852:5: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstarr[n][0]), &(Dtypeaddr[(int)*blocksize + n])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1857:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(&(pstnumarr[0]), &(Dtypeaddr[(int)*blocksize + pstlistnum])); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:1859:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(((int)*blocksize + pstlistnum + 1), Dtypelens, Dtypeaddr, Dtypes, &PP_Biparts); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_SendDone’: ./ppuzzle.c:2056:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2057:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2059:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ ./ppuzzle.c: In function ‘PP_RecvDone’: ./ppuzzle.c:2176:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(ints, Dtypeaddr); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2177:3: warning: ‘MPI_Address’ is deprecated: MPI_Address is superseded by MPI_Get_address in MPI-2.0 [-Wdeprecated-declarations] MPI_Address(doubles, (Dtypeaddr+1)); ^~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1200:20: note: declared here OMPI_DECLSPEC int MPI_Address(void *location, MPI_Aint *address) ^~~~~~~~~~~ ./ppuzzle.c:2179:3: warning: ‘MPI_Type_struct’ is deprecated: MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0 [-Wdeprecated-declarations] MPI_Type_struct(2, Dtypelens, Dtypeaddr, Dtypes, &PP_Stats); ^~~~~~~~~~~~~~~ In file included from ./ppuzzle.c:25:0: /usr/lib/openmpi/include/mpi.h:1817:20: note: declared here OMPI_DECLSPEC int MPI_Type_struct(int count, int array_of_blocklengths[], ^~~~~~~~~~~~~~~ /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro pgamma.o pml1.o pml2.o pmlparam.o pmodel1.o pmodel2.o ppuzzle1.o ppuzzle2.o ppstep.o psched.o putil.o pconsensus.o ptreesort.o ptreetest.o ppuzzle.o -lsprng -lm -o ppuzzle make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making all in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making all in data make[2]: Entering directory '/<>/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/data' Making all in tests make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' # unfortunately most tests are failing for the moment # the issue is documented in # debian/patches/patch_test_results.patch # and needs to be discussed with upstream dh_auto_test || true make -j1 check VERBOSE=1 make[2]: Entering directory '/<>' Making check in src make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' Making check in doc make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' Making check in data make[3]: Entering directory '/<>/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/data' Making check in tests make[3]: Entering directory '/<>/tests' make check-TESTS make[4]: Entering directory '/<>/tests' make[5]: Entering directory '/<>/tests' SKIP: build-puzzle FAIL: qp-pure-bin.test FAIL: qp-pure-nucl.test FAIL: qp-tn-nucl.test FAIL: qp-hky-clock-nucl.test FAIL: qp-hky-rhet-nucl.test FAIL: qp-hky-rhet-clock-nucl.test FAIL: qp-pure-prot.test FAIL: qp-mtrev-prot.test FAIL: qp-vt-prot.test FAIL: qp-wag-prot.test FAIL: qp-clock.test FAIL: qp-jtt-prot.test FAIL: qp-jtt-rhet-prot.test FAIL: qp-jtt-rhet-clock-prot.test FAIL: lm-pure-prot.test FAIL: ut-pure-prot.test FAIL: cons-pure-prot.test SKIP: build-remark ============================ : tests/test-suite.log ============================ # TOTAL: 19 # PASS: 0 # SKIP: 2 # XFAIL: 0 # FAIL: 17 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 SKIP: build-puzzle ================== SKIP build-puzzle (exit status: 77) FAIL: qp-pure-bin ================= Testing: binary data, quartet puzzling (qp-pure-bin) 171d170 < *...* : 1000 172a172 > *...* : 1000 FAIL qp-pure-bin.test (exit status: 1) FAIL: qp-pure-nucl ================== Testing: nucleotide data, default model, quartet puzzling (qp-pure-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); FAIL qp-pure-nucl.test (exit status: 1) FAIL: qp-tn-nucl ================ Testing: nucleotide data, TN, quartet puzzling (qp-tn-nucl) 24,25c24,25 < Transition/transversion parameter (estimated from data set): 1.25 (S.E. 0.40) < Y/R transition parameter (estimated from data set): 2.26 (S.E. 0.89) --- > Transition/transversion parameter (estimated from data set): 1.24 (S.E. 0.61) > Y/R transition parameter (estimated from data set): 2.27 (S.E. 0.65) 30c30 < A-G rate: 1.54307 --- > A-G rate: 1.52641 33c33 < C-T rate: 3.45671 --- > C-T rate: 3.42338 43,44c43,44 < Expected transition/transversion ratio: 1.58 < Expected pyrimidine transition/purine transition ratio: 6.68 --- > Expected transition/transversion ratio: 1.57 > Expected pyrimidine transition/purine transition ratio: 6.69 102,116c102,116 < Thylacinus 0.00000 0.25985 0.22390 0.25044 0.26641 0.22 0.22626 < 0.24180 < Sarcophilu 0.25985 0.00000 0.13242 0.27396 0.28989 0.33153 0.26303 < 0.30195 < Dasyurus 0.22390 0.13242 0.00000 0.20339 0.25292 0.25452 0.17982 < 0.24252 < Echymipera 0.25044 0.27396 0.20339 0.00000 0.30315 0.34463 0.23492 < 0.27794 < Trichosuru 0.26641 0.28989 0.25292 0.30315 0.00000 0.21427 0.29184 < 0.27804 < Phalanger 0.22 0.33153 0.25452 0.34463 0.21427 0.00000 0.29454 < 0.33617 < Philander 0.22626 0.26303 0.17982 0.23492 0.29184 0.29454 0.00000 < 0.22765 < Bos 0.24180 0.30195 0.24252 0.27794 0.27804 0.33617 0.22765 --- > Thylacinus 0.00000 0.25968 0.22378 0.25026 0.26619 0.25302 0.22610 > 0.24162 > Sarcophilu 0.25968 0.00000 0.13240 0.27376 0.28965 0.33121 0.26282 > 0.30169 > Dasyurus 0.22378 0.13240 0.00000 0.20328 0.25274 0.25432 0.17972 > 0.24235 > Echymipera 0.25026 0.27376 0.20328 0.00000 0.30289 0.34430 0.23479 > 0.27773 > Trichosuru 0.26619 0.28965 0.25274 0.30289 0.00000 0.21414 0.29157 > 0.27782 > Phalanger 0.25302 0.33121 0.25432 0.34430 0.21414 0.00000 0.29425 > 0.33582 > Philander 0.22610 0.26282 0.17972 0.23479 0.29157 0.29425 0.00000 > 0.22749 > Bos 0.24162 0.30169 0.24235 0.27773 0.27782 0.33582 0.22749 119,121c119,121 < Average distance (over all possible pairs of sequences): 0.25896 < minimum : 0.13242, maximum : 0.34463 < variance : 0.00217, std.dev. : 0.04660 --- > Average distance (over all possible pairs of sequences): 0.25876 > minimum : 0.13240, maximum : 0.34430 > variance : 0.00217, std.dev. : 0.04653 186c186 < :-----93: --- > :-----94: 193,194c193,194 < :-67: :---Philander < : :-66: --- > :-63: :---Philander > : :-67: 204,205c204,205 < (Thylacinus,(Trichosuru,Phalanger)93,((Sarcophilu,Dasyurus)98, < (Philander,Bos)66,Echymipera)67); --- > (Thylacinus,(Trichosuru,Phalanger)94,((Sarcophilu,Dasyurus)98, > (Philander,Bos)67,Echymipera)63); 215,218c215,218 < *..***** : 981 < ****..** : 929 < *...**.. : 667 < ******.. : 655 --- > *..***** : 979 > ****..** : 935 > ******.. : 666 > *...**.. : 629 224c224 < *...**** : 399 --- > *...**** : 422 229,248c229,248 < ***.**.. : 267 < *..***.. : 153 < *...**.* : 142 < ***.**.* : 113 < *..*..** : 98 < ****..*. : 91 < *.....** : 71 < *....*.. : 69 < ****.... : 61 < *..*.... : 49 < ***.***. : 34 < *..***.* : 34 < ***..... : 32 < ***...** : 26 < *..*..*. : 25 < *.....*. : 24 < *......* : 21 < **..**** : 18 < *...***. : 15 < *..****. : 14 --- > ***.**.. : 271 > *..***.. : 132 > *...**.* : 122 > ***.**.* : 112 > *..*..** : 94 > *.....** : 88 > ****.... : 83 > ****..*. : 79 > *..*.... : 65 > *....*.. : 56 > *..***.* : 49 > ***.***. : 40 > ***..... : 36 > **..**** : 21 > *..*..*. : 21 > *.....*. : 20 > *......* : 19 > *...***. : 17 > ***...** : 13 > ****.**. : 7 250c250 < (3 other less frequent bipartitions not shown) --- > (9 other less frequent bipartitions not shown) 277,284c277,284 < Thylacinus 1 0.11477 0.03960 9 0.05938 0.03457 < Sarcophilu 2 0.12894 0.03728 10 0.08150 0.03444 < Dasyurus 3 0.00944 0.01286 11 0.04414 0.02611 < Echymipera 4 0.14315 0.04219 12 0.05430 0.03073 < Trichosuru 5 0.10852 0.03853 < Phalanger 6 0.12336 0.04131 < Philander 7 0.09011 0.03480 7 iterations until convergence < Bos 8 0.13730 0.04197 log L: -600.80 --- > Thylacinus 1 0.11472 0.03957 9 0.05924 0.03453 > Sarcophilu 2 0.12889 0.03726 10 0.08141 0.03441 > Dasyurus 3 0.00946 0.01286 11 0.04411 0.02610 > Echymipera 4 0.14312 0.04216 12 0.05429 0.03071 > Trichosuru 5 0.10849 0.03850 > Phalanger 6 0.12332 0.04128 > Philander 7 0.09008 0.03478 7 iterations until convergence > Bos 8 0.13724 0.04194 log L: -600.80 290,292c290,292 < (Thylacinus:0.11477,(Trichosuru:0.10852,Phalanger:0.12336)93:0.05938, < ((Sarcophilu:0.12894,Dasyurus:0.00944)98:0.08150,(Philander:0.09011, < Bos:0.13730)66:0.04414,Echymipera:0.14315)67:0.05430); --- > (Thylacinus:0.11472,(Trichosuru:0.10849,Phalanger:0.12332)94:0.05924, > ((Sarcophilu:0.12889,Dasyurus:0.00946)98:0.08141,(Philander:0.09008, > Bos:0.13724)67:0.04411,Echymipera:0.14312)63:0.05429); FAIL qp-tn-nucl.test (exit status: 1) FAIL: qp-hky-clock-nucl ======================= Testing: nucleotide data, HKY, clock, quartet puzzling (qp-hky-clock-nucl) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-hky-clock-nucl.test (exit status: 1) FAIL: qp-hky-rhet-nucl ====================== Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl) 29c29 < A-G rate: 5.85001 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85001 --- > C-T rate: 5.85063 101,115c101,115 < Thylacinus 0.00000 0.52935 0.37897 0.31 0.58915 0.56144 0.43928 < 0.85 < Sarcophilu 0.52935 0.00000 0.17837 0.62525 0.69884 0.93 0.62320 < 0.78586 < Dasyurus 0.37897 0.17837 0.00000 0.39029 0.53425 0.60362 0.31917 < 0.14 < Echymipera 0.31 0.62525 0.39029 0.00000 0.70221 0.94270 0.42012 < 0.66056 < Trichosuru 0.58915 0.69884 0.53425 0.70221 0.00000 0.39413 0.70009 < 0.62690 < Phalanger 0.56144 0.93 0.60362 0.94270 0.39413 0.00000 0.78648 < 0.98907 < Philander 0.43928 0.62320 0.31917 0.42012 0.70009 0.78648 0.00000 < 0.49259 < Bos 0.85 0.78586 0.14 0.66056 0.62690 0.98907 0.49259 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59090 < minimum : 0.17837, maximum : 0.98907 < variance : 0.03580, std.dev. : 0.18921 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 137,139c137,139 < 6 0.7769 0.1250 < 7 1.8181 0.1250 < 8 4.9545 0.1250 --- > 6 0.7768 0.1250 > 7 1.8180 0.1250 > 8 4.9547 0.1250 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,308c300,307 < Thylacinus 1 0.23361 0.10247 9 0.19926 0.09575 < Sarcophilu 2 0.18904 0.06712 10 0.22288 0.13092 < Dasyurus 3 0.00001 0.00143 < Echymipera 4 0.27839 0.11689 < Trichosuru 5 0.17820 0.10158 < Phalanger 6 0.27517 0.12611 < Philander 7 0.22531 0.10268 10 iterations until convergence < Bos 8 0.38503 0.14564 log L: -570.33 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 > Trichosuru 5 0.17822 0.10160 > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23361,(Sarcophilu:0.18904,Dasyurus:0.00001)92:0.19926, < (Trichosuru:0.17820,Phalanger:0.27517)86:0.22288,Echymipera:0.27839, < Philander:0.22531,Bos:0.38503); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); FAIL qp-hky-rhet-nucl.test (exit status: 1) FAIL: qp-hky-rhet-clock-nucl ============================ Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl) 29c29 < A-G rate: 5.85001 --- > A-G rate: 5.85063 32c32 < C-T rate: 5.85001 --- > C-T rate: 5.85063 101,115c101,115 < Thylacinus 0.00000 0.52935 0.37897 0.31 0.58915 0.56144 0.43928 < 0.85 < Sarcophilu 0.52935 0.00000 0.17837 0.62525 0.69884 0.93 0.62320 < 0.78586 < Dasyurus 0.37897 0.17837 0.00000 0.39029 0.53425 0.60362 0.31917 < 0.14 < Echymipera 0.31 0.62525 0.39029 0.00000 0.70221 0.94270 0.42012 < 0.66056 < Trichosuru 0.58915 0.69884 0.53425 0.70221 0.00000 0.39413 0.70009 < 0.62690 < Phalanger 0.56144 0.93 0.60362 0.94270 0.39413 0.00000 0.78648 < 0.98907 < Philander 0.43928 0.62320 0.31917 0.42012 0.70009 0.78648 0.00000 < 0.49259 < Bos 0.85 0.78586 0.14 0.66056 0.62690 0.98907 0.49259 --- > Thylacinus 0.00000 0.52940 0.37900 0.52236 0.58922 0.56150 0.43932 > 0.55291 > Sarcophilu 0.52940 0.00000 0.17837 0.62532 0.69892 0.93602 0.62327 > 0.78596 > Dasyurus 0.37900 0.17837 0.00000 0.39032 0.53431 0.60369 0.31919 > 0.56220 > Echymipera 0.52236 0.62532 0.39032 0.00000 0.70229 0.94283 0.42016 > 0.66063 > Trichosuru 0.58922 0.69892 0.53431 0.70229 0.00000 0.39416 0.70017 > 0.62697 > Phalanger 0.56150 0.93602 0.60369 0.94283 0.39416 0.00000 0.78658 > 0.98921 > Philander 0.43932 0.62327 0.31919 0.42016 0.70017 0.78658 0.00000 > 0.49264 > Bos 0.55291 0.78596 0.56220 0.66063 0.62697 0.98921 0.49264 118,120c118,120 < Average distance (over all possible pairs of sequences): 0.59090 < minimum : 0.17837, maximum : 0.98907 < variance : 0.03580, std.dev. : 0.18921 --- > Average distance (over all possible pairs of sequences): 0.59096 > minimum : 0.17837, maximum : 0.98921 > variance : 0.03581, std.dev. : 0.18924 137,139c137,139 < 6 0.7769 0.1250 < 7 1.8181 0.1250 < 8 4.9545 0.1250 --- > 6 0.7768 0.1250 > 7 1.8180 0.1250 > 8 4.9547 0.1250 210c210 < :-92: --- > :-90: 214c214 < :-86: --- > :-87: 228c228 < (Thylacinus,(Sarcophilu,Dasyurus)92,(Trichosuru,Phalanger)86, --- > (Thylacinus,(Sarcophilu,Dasyurus)90,(Trichosuru,Phalanger)87, 239,240c239,240 < *..***** : 924 < ****..** : 855 --- > *..***** : 904 > ****..** : 872 246,248c246,247 < *...**.. : 387 < ******.. : 339 < *...**** : 213 --- > *...**.. : 377 > ******.. : 357 253,272c252,271 < ***.**.* : 209 < ***.**.. : 203 < ***.***. : 171 < *..*..** : 138 < *......* : 114 < *...**.* : 112 < *..***.. : 98 < *.....** : 96 < *..***.* : 94 < *..*.... : 93 < ***..... : 88 < *..****. : 78 < *...***. : 77 < ****..*. : 72 < ***...** : 66 < *....*.. : 62 < *.....*. : 61 < ****.... : 61 < ****...* : 45 < *..*..*. : 42 --- > ***.**.* : 220 > ***.**.. : 218 > *...**** : 205 > ***.***. : 145 > *......* : 135 > *..*..** : 129 > *...**.* : 124 > *.....** : 106 > *..*.... : 102 > *..***.* : 92 > *..***.. : 91 > ***..... : 86 > *.....*. : 71 > ***...** : 70 > *..****. : 67 > ****..*. : 67 > *....*.. : 64 > *...***. : 54 > ****.... : 52 > *..*...* : 47 274c273 < (47 other less frequent bipartitions not shown) --- > (49 other less frequent bipartitions not shown) 301,308c300,307 < Thylacinus 1 0.23361 0.10247 9 0.19926 0.09575 < Sarcophilu 2 0.18904 0.06712 10 0.22288 0.13092 < Dasyurus 3 0.00001 0.00143 < Echymipera 4 0.27839 0.11689 < Trichosuru 5 0.17820 0.10158 < Phalanger 6 0.27517 0.12611 < Philander 7 0.22531 0.10268 10 iterations until convergence < Bos 8 0.38503 0.14564 log L: -570.33 --- > Thylacinus 1 0.23363 0.10248 9 0.19927 0.09576 > Sarcophilu 2 0.18905 0.06712 10 0.22291 0.13093 > Dasyurus 3 0.00001 0.00200 > Echymipera 4 0.27841 0.11691 > Trichosuru 5 0.17822 0.10160 > Phalanger 6 0.27519 0.12613 > Philander 7 0.22533 0.10269 10 iterations until convergence > Bos 8 0.38507 0.14566 log L: -570.33 316,318c315,317 < (Thylacinus:0.23361,(Sarcophilu:0.18904,Dasyurus:0.00001)92:0.19926, < (Trichosuru:0.17820,Phalanger:0.27517)86:0.22288,Echymipera:0.27839, < Philander:0.22531,Bos:0.38503); --- > (Thylacinus:0.23363,(Sarcophilu:0.18905,Dasyurus:0.00001)90:0.19927, > (Trichosuru:0.17822,Phalanger:0.27519)87:0.22291,Echymipera:0.27841, > Philander:0.22533,Bos:0.38507); 352,359c351,358 < Thylacinus 1 0.29774 0.785 9 0.20354 0.979 < Sarcophilu 2 0.09419 2.007 10 0.22844 0.976 < Dasyurus 3 0.09419 0.000 < Echymipera 4 0.29774 0.935 < Trichosuru 5 0.23469 0.759 < Phalanger 6 0.23469 1.172 < Philander 7 0.29774 0.757 16 iterations until convergence < Bos 8 0.29774 1.293 log L: -573.89 --- > Thylacinus 1 0.29776 0.785 9 0.20356 0.979 > Sarcophilu 2 0.09420 2.007 10 0.22846 0.976 > Dasyurus 3 0.09420 0.000 > Echymipera 4 0.29776 0.935 > Trichosuru 5 0.23472 0.759 > Phalanger 6 0.23472 1.172 > Philander 7 0.29776 0.757 16 iterations until convergence > Bos 8 0.29776 1.293 log L: -573.89 362,365c361,364 < 0.23469 0.07630 10 5 6 < 0.09419 0.03153 9 2 3 < 0.29774 0.05401 10 4 7 8 1 9 < 0.38044 0.07030 of root at branch 10 --- > 0.23472 0.07631 10 5 6 > 0.09420 0.03153 9 2 3 > 0.29776 0.05401 10 4 7 8 1 9 > 0.38047 0.07031 of root at branch 10 371,373c370,372 < ((Trichosuru:0.23469,Phalanger:0.23469)86:0.14574,(Echymipera:0.29774, < Philander:0.29774,Bos:0.29774,Thylacinus:0.29774,(Sarcophilu:0.09419, < Dasyurus:0.09419)92:0.20354):0.08270); --- > ((Trichosuru:0.23472,Phalanger:0.23472)87:0.14575,(Echymipera:0.29776, > Philander:0.29776,Bos:0.29776,Thylacinus:0.29776,(Sarcophilu:0.09420, > Dasyurus:0.09420)90:0.20356):0.08271); FAIL qp-hky-rhet-clock-nucl.test (exit status: 1) FAIL: qp-pure-prot ================== Testing: protein data, default model, quartet puzzling (qp-pure-prot) 177,185c177,185 < :---GLB5_PETMA < :-56: < :100: :---LGB2_LUPLU < : : < :100: :-------MYG_PHYCA < : : < : : :---HBA_HUMAN < : :----100: < : :---HBA_HORSE --- > :---HBA_HUMAN > :----100: > : :---HBA_HORSE > :100: > : : :---GLB5_PETMA > : : :-54: > : :100: :---LGB2_LUPLU > : : > : :-------MYG_PHYCA 194,195c194,195 < (HBB_HUMAN,(((GLB5_PETMA,LGB2_LUPLU)56,MYG_PHYCA)100,(HBA_HUMAN, < HBA_HORSE)100)100,HBB_HORSE); --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,((GLB5_PETMA,LGB2_LUPLU)54, > MYG_PHYCA)100)100,HBB_HORSE); 205,206d204 < ****... : 1000 < **..*** : 1000 208c206,208 < *****.. : 563 --- > **..*** : 1000 > ****... : 1000 > *****.. : 544 219,220c219,220 < ****..* : 221 < ****.*. : 216 --- > ****.*. : 234 > ****..* : 222 229,233c229,231 < :------6 GLB5_PETMA < :---8 < : :----------------7 LGB2_LUPLU < :-----9 < : :-------------5 MYG_PHYCA --- > :-3 HBA_HUMAN > :----8 > : :-4 HBA_HORSE 235,237c233,237 < : : :-3 HBA_HUMAN < : :---10 < : :-4 HBA_HORSE --- > : : :------6 GLB5_PETMA > : : :---9 > : : : :----------------7 LGB2_LUPLU > : :----10 > : :-------------5 MYG_PHYCA 245,251c245,251 < HBB_HUMAN 1 0.04915 0.03158 8 0.18155 0.13086 < HBB_HORSE 2 0.12604 0.03871 9 0.34694 0.12 < HBA_HUMAN 3 0.02555 0.02185 10 0.28345 0.08777 < HBA_HORSE 4 0.09 0.03153 11 0.60239 0.11261 < MYG_PHYCA 5 1.33162 0.21116 < GLB5_PETMA 6 0.57465 0.13843 10 iterations until convergence < LGB2_LUPLU 7 1.71330 0.27644 log L: -1699.00 --- > HBB_HUMAN 1 0.04915 0.03158 8 0.28345 0.08777 > HBB_HORSE 2 0.12603 0.03871 9 0.18154 0.13086 > HBA_HUMAN 3 0.02555 0.02185 10 0.34694 0.12552 > HBA_HORSE 4 0.09542 0.03153 11 0.60239 0.11261 > MYG_PHYCA 5 1.33166 0.21117 > GLB5_PETMA 6 0.57466 0.13843 10 iterations until convergence > LGB2_LUPLU 7 1.71333 0.27645 log L: -1699.00 257,259c257,259 < (HBB_HUMAN:0.04915,(((GLB5_PETMA:0.57465,LGB2_LUPLU:1.71330)56:0.18155, < MYG_PHYCA:1.33162)100:0.34694,(HBA_HUMAN:0.02555,HBA_HORSE:0.09) < 100:0.28345)100:0.60239,HBB_HORSE:0.12604); --- > (HBB_HUMAN:0.04915,((HBA_HUMAN:0.02555,HBA_HORSE:0.09542)100:0.28345, > ((GLB5_PETMA:0.57466,LGB2_LUPLU:1.71333)54:0.18154,MYG_PHYCA:1.33166) > 100:0.34694)100:0.60239,HBB_HORSE:0.12603); FAIL qp-pure-prot.test (exit status: 1) FAIL: qp-mtrev-prot =================== Testing: protein data, mtREV, quartet puzzling (qp-mtrev-prot) 107c107 < HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55 3.05140 --- > HBA_HORSE 1.16856 1.20524 0.13144 0.00000 2.44163 1.55582 3.05140 109c109 < GLB5_PETMA 2.15305 2.18071 1.43785 1.55 2.62256 0.00000 2.97722 --- > GLB5_PETMA 2.15305 2.18071 1.43785 1.55582 2.62256 0.00000 2.97722 183c183 < : :-96:---GLB5_PETMA --- > : :-97:---GLB5_PETMA 194c194 < (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)96)100, --- > (HBB_HUMAN,((HBA_HUMAN,HBA_HORSE)100,(MYG_PHYCA,GLB5_PETMA,LGB2_LUPLU)97)100, 205d204 < **..*** : 1000 207c206,207 < ****... : 959 --- > **..*** : 1000 > ****... : 971 213c213 < *****.. : 444 --- > ****.*. : 462 218,221c218,222 < ****.*. : 442 < ****..* : 113 < **..*.. : 24 < **..*.* : 18 --- > *****.. : 436 > ****..* : 100 > **..*.* : 15 > **..*.. : 14 > **....* : 2 259c260 < (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)96:0.34149) --- > (MYG_PHYCA:1.58550,GLB5_PETMA:0.88663,LGB2_LUPLU:2.13259)97:0.34149) FAIL qp-mtrev-prot.test (exit status: 1) FAIL: qp-vt-prot ================ Testing: protein data, VT, quartet puzzling (qp-vt-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 246c246 < HBA_HUMAN 3 0.03150 0.02213 10 0.96 0.10035 --- > HBA_HUMAN 3 0.03150 0.02213 10 0.54296 0.10035 257c257 < 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.96, --- > 100:0.42025,(HBA_HUMAN:0.03150,HBA_HORSE:0.08803)100:0.25241)100:0.54296, FAIL qp-vt-prot.test (exit status: 1) FAIL: qp-wag-prot ================= Testing: protein data, WAG, quartet puzzling (qp-wag-prot) 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < ****..* : 365 --- > *****.. : 347 218,219c218,219 < *****.. : 324 < ****.*. : 311 --- > ****..* : 331 > ****.*. : 322 244,246c244,246 < HBB_HUMAN 1 0.08 0.03102 8 0.44299 0.11946 < HBB_HORSE 2 0.11946 0.03741 9 0.25788 0.08204 < HBA_HUMAN 3 0.02934 0.02190 10 0.57110 0.10504 --- > HBB_HUMAN 1 0.05028 0.03102 8 0.44299 0.11946 > HBB_HORSE 2 0.11946 0.03740 9 0.25788 0.08204 > HBA_HUMAN 3 0.02934 0.02189 10 0.57110 0.10504 256c256 < (HBB_HUMAN:0.08,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) --- > (HBB_HUMAN:0.05028,((MYG_PHYCA:1.11230,GLB5_PETMA:0.59340,LGB2_LUPLU:1.46501) FAIL qp-wag-prot.test (exit status: 1) FAIL: qp-clock ============== Testing: default data, default model, clock, quartet puzzling (qp-clock) 101c101 < Thylacinus 0.00000 0.25 0.22032 0.24509 0.26007 0.24938 0.22246 --- > Thylacinus 0.00000 0.25562 0.22032 0.24509 0.26007 0.24938 0.22246 103c103 < Sarcophilu 0.25 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 --- > Sarcophilu 0.25562 0.00000 0.13169 0.26969 0.28414 0.32680 0.26008 109c109 < Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28 --- > Trichosuru 0.26007 0.28414 0.24821 0.29531 0.00000 0.21136 0.28562 113c113 < Philander 0.22246 0.26008 0.17801 0.23041 0.28 0.29036 0.00000 --- > Philander 0.22246 0.26008 0.17801 0.23041 0.28562 0.29036 0.00000 185c185 < :-----96: --- > :-----97: 189c189 < : :-99: --- > : :-98: 192,193c192,193 < :-70: :---Philander < : :-66: --- > :-71: :---Philander > : :-65: 203,204c203,204 < (Thylacinus,(Trichosuru,Phalanger)96,((Sarcophilu,Dasyurus)99, < (Philander,Bos)66,Echymipera)70); --- > (Thylacinus,(Trichosuru,Phalanger)97,((Sarcophilu,Dasyurus)98, > (Philander,Bos)65,Echymipera)71); 214,217c214,217 < *..***** : 987 < ****..** : 961 < *...**.. : 698 < ******.. : 658 --- > *..***** : 981 > ****..** : 971 > *...**.. : 713 > ******.. : 649 223c223 < *...**** : 389 --- > *...**** : 426 228c228 < ***.**.. : 367 --- > ***.**.. : 347 230,239c230,240 < *...**.* : 124 < *..***.. : 108 < *..*..** : 105 < *.....** : 66 < ****..*. : 49 < ****.... : 39 < ***..... : 38 < *....*.. : 36 < *..***.* : 31 < ***.***. : 28 --- > *...**.* : 131 > *..***.. : 87 > *..*..** : 81 > *.....** : 72 > ****..*. : 55 > ***.***. : 37 > ****.... : 36 > *..***.* : 36 > ***..... : 31 > *.....*. : 28 > *...***. : 27 241,243c242 < *...***. : 26 < *..*..*. : 24 < *.....*. : 22 --- > *....*.. : 26 245,247c244,247 < ***...** : 16 < **..**** : 10 < *..****. : 9 --- > **..**** : 16 > ***...** : 14 > *..*..*. : 13 > *..****. : 12 249c249 < (7 other less frequent bipartitions not shown) --- > (6 other less frequent bipartitions not shown) 278c278 < Dasyurus 3 0.00 0.01273 11 0.04220 0.02513 --- > Dasyurus 3 0.00572 0.01273 11 0.04220 0.02513 289,291c289,291 < (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)96:0.05953, < ((Sarcophilu:0.13180,Dasyurus:0.00)99:0.08585,(Philander:0.08995, < Bos:0.13479)66:0.04220,Echymipera:0.13997)70:0.05457); --- > (Thylacinus:0.11024,(Trichosuru:0.10654,Phalanger:0.12258)97:0.05953, > ((Sarcophilu:0.13180,Dasyurus:0.00572)98:0.08585,(Philander:0.08995, > Bos:0.13479)65:0.04220,Echymipera:0.13997)71:0.05457); 346,348c346,348 < (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)96:0.04504 < ,((Sarcophilu:0.06189,Dasyurus:0.06189)99:0.06663,(Philander:0.09549, < Bos:0.09549)66:0.03304,Echymipera:0.12852)70:0.01851):0.00001); --- > (Thylacinus:0.14705,((Trichosuru:0.10199,Phalanger:0.10199)97:0.04504 > ,((Sarcophilu:0.06189,Dasyurus:0.06189)98:0.06663,(Philander:0.09549, > Bos:0.09549)65:0.03304,Echymipera:0.12852)71:0.01851):0.00001); FAIL qp-clock.test (exit status: 1) FAIL: qp-jtt-prot ================= Testing: protein data, JTT, quartet puzzling (qp-jtt-prot) 106,107c106,107 < HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.26 2.51688 < HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47 --- > HBA_HUMAN 0.93732 0.97297 0.00000 0.12200 1.93956 1.25126 2.51688 > HBA_HORSE 0.96340 0.97742 0.12200 0.00000 1.99570 1.34817 2.47562 109,110c109,110 < GLB5_PETMA 1.74159 1.75271 1.26 1.34817 2.04426 0.00000 2.23399 < LGB2_LUPLU 2.60857 2.65715 2.51688 2.47 2.69086 2.23399 0.00000 --- > GLB5_PETMA 1.74159 1.75271 1.25126 1.34817 2.04426 0.00000 2.23399 > LGB2_LUPLU 2.60857 2.65715 2.51688 2.47562 2.69086 2.23399 0.00000 206d205 < **..*** : 1000 207a207 > **..*** : 1000 213c213 < *****.. : 396 --- > *****.. : 393 218,219c218,219 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 245,246c245,246 < HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08 < HBA_HUMAN 3 0.02556 0.02190 10 0.61836 0.11268 --- > HBB_HORSE 2 0.12734 0.03889 9 0.25371 0.08572 > HBA_HUMAN 3 0.02556 0.02189 10 0.61836 0.11268 FAIL qp-jtt-prot.test (exit status: 1) FAIL: qp-jtt-rhet-prot ====================== Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot) 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 270c270 < HBB_HUMAN 1 0.04933 0.03410 8 0.50700 0.17282 --- > HBB_HUMAN 1 0.04933 0.03409 8 0.50700 0.17281 FAIL qp-jtt-rhet-prot.test (exit status: 1) FAIL: qp-jtt-rhet-clock-prot ============================ Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot) 232d231 < **..*** : 1000 233a233 > **..*** : 1000 239c239 < *****.. : 396 --- > *****.. : 393 244,245c244,245 < ****.*. : 375 < ****..* : 229 --- > ****.*. : 380 > ****..* : 227 270c270 < HBB_HUMAN 1 0.04933 0.03410 8 0.50700 0.17282 --- > HBB_HUMAN 1 0.04933 0.03409 8 0.50700 0.17281 316c316 < HBB_HUMAN 1 0.08775 0. 8 0.58020 0.874 --- > HBB_HUMAN 1 0.08775 0.562 8 0.58020 0.874 FAIL qp-jtt-rhet-clock-prot.test (exit status: 1) FAIL: lm-pure-prot ================== Testing: protein data, default model, likelihood mapping (lm-pure-prot) 148c148 < Number of quartets in region 1: 17 (= 48.6%) --- > Number of quartets in region 1: 14 (= 40.0%) 150c150 < Number of quartets in region 3: 7 (= 20.0%) --- > Number of quartets in region 3: 10 (= 28.6%) 165,167c165,167 < Number of quartets in region 1: 16 (= 45.7%) left: 7 right: 9 < Number of quartets in region 2: 9 (= 25.7%) bottom: 3 top: 6 < Number of quartets in region 3: 7 (= 20.0%) bottom: 2 top: 5 --- > Number of quartets in region 1: 12 (= 34.3%) left: 3 right: 9 > Number of quartets in region 2: 11 (= 31.4%) bottom: 3 top: 8 > Number of quartets in region 3: 9 (= 25.7%) bottom: 4 top: 5 FAIL lm-pure-prot.test (exit status: 1) FAIL: ut-pure-prot ================== Testing: protein data, default model, user tree evaluation (ut-pure-prot) 151c151 < HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00192 --- > HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00141 191,193c191,193 < HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08777 < HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13086 < HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12 --- > HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08778 > HBB_HORSE 2 0.12604 0.03871 9 0.18149 0.13088 > HBA_HUMAN 3 0.02555 0.02185 10 0.34695 0.12552 196c196 < GLB5_PETMA 6 0.57473 0.13844 9 iterations until convergence --- > GLB5_PETMA 6 0.57473 0.13845 9 iterations until convergence 289,292c289,292 < 1 -1699.50 0.49 1.0266 0.3220 + 0.4870 + 0.1918 + + < 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3601 + best < 3 -1699.32 0.32 1.3440 0.3930 + 0.4610 + 0.2563 + + < 4 -1699.50 0.49 1.0267 0.2960 + 0.4870 + 0.1918 + + --- > 1 -1699.50 0.49 1.0266 0.3020 + 0.4700 + 0.1881 + + > 2 -1699.00 0.00 <---- best 1.0000 + 1.0000 + 0.3650 + best > 3 -1699.32 0.32 1.3440 0.4030 + 0.4690 + 0.2588 + + > 4 -1699.50 0.49 1.0267 0.3070 + 0.4700 + 0.1881 + + FAIL ut-pure-prot.test (exit status: 1) FAIL: cons-pure-prot ==================== Testing: protein data, default model, consensus construction (cons-pure-prot) 203c203 < HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08745 --- > HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08746 FAIL cons-pure-prot.test (exit status: 1) SKIP: build-remark ================== *** *** !!! Important remark !!! *** *** Please note that only the output file *.puzzle is checked *** for identity. The overall precision reached in the program *** is heavily dependent on the compiler as well as the optimization *** level (-O) used to compile the executable. *** Hence, even if tests are marked as failed this might just be *** due to differences in less significant digits caused by rounding *** errors from less acurate computations for the sake of faster *** running times. (If you want to be sure about this please refer *** to your compiler's manual!) *** *** Please check the output file differences which are printed during the tests. *** The template files which the results are checked against have been *** generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226 *** and default compiler flags '-g -O2' and using the SPRNG random number *** generator. *** SKIP build-remark (exit status: 77) ============================================================================ Testsuite summary for ============================================================================ # TOTAL: 19 # PASS: 0 # SKIP: 2 # XFAIL: 0 # FAIL: 17 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log ============================================================================ Makefile:563: recipe for target 'test-suite.log' failed make[5]: *** [test-suite.log] Error 1 make[5]: Leaving directory '/<>/tests' Makefile:669: recipe for target 'check-TESTS' failed make[4]: *** [check-TESTS] Error 2 make[4]: Leaving directory '/<>/tests' Makefile:749: recipe for target 'check-am' failed make[3]: *** [check-am] Error 2 make[3]: Leaving directory '/<>/tests' Makefile:380: recipe for target 'check-recursive' failed make[2]: *** [check-recursive] Error 1 make[2]: Leaving directory '/<>' dh_auto_test: make -j1 check VERBOSE=1 returned exit code 2 make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c puzzle ppuzzle '/<>/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[4]: Entering directory '/<>/doc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/doc' make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making install in data make[2]: Entering directory '/<>/data' make[3]: Entering directory '/<>/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/data' make[2]: Leaving directory '/<>/data' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # The binary has to be renamed because of the generic name mv `pwd`/debian/tmp/usr/bin/puzzle `pwd`/debian/tree-puzzle/usr/bin/tree-puzzle mv `pwd`/debian/tmp/usr/bin/ppuzzle `pwd`/debian/tree-ppuzzle/usr/bin/tree-ppuzzle make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_installmenu -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf --exclude .phy --exclude trees --exclude .b make[1]: Leaving directory '/<>' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: tree-puzzle tree-ppuzzle dh_strip debug symbol extraction: packages to act on: tree-puzzle tree-ppuzzle dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tree-puzzle/usr/bin/tree-puzzle was not linked against ld-linux-aarch64.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tree-ppuzzle/usr/bin/tree-ppuzzle was not linked against ld-linux-aarch64.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tree-ppuzzle/usr/bin/tree-ppuzzle was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: tree-puzzle tree-ppuzzle dh_gencontrol debug symbol wrapper: packages to act on: tree-puzzle tree-ppuzzle dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package tree-puzzle (pkgdir debian/tree-puzzle, ddeb package dir debian/tree-puzzle-dbgsym) dh_gencontrol debug symbol wrapper: building tree-puzzle-dbgsym_5.2-8build2_arm64.ddeb dpkg-deb: building package 'tree-puzzle-dbgsym' in '../tree-puzzle-dbgsym_5.2-8build2_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile tree-puzzle-dbgsym_5.2-8build2_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package tree-ppuzzle (pkgdir debian/tree-ppuzzle, ddeb package dir debian/tree-ppuzzle-dbgsym) dh_gencontrol debug symbol wrapper: building tree-ppuzzle-dbgsym_5.2-8build2_arm64.ddeb dpkg-deb: building package 'tree-ppuzzle-dbgsym' in '../tree-ppuzzle-dbgsym_5.2-8build2_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile tree-ppuzzle-dbgsym_5.2-8build2_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing tree-ppuzzle (in debian/tree-ppuzzle); do_strip: , oemstrip: pkgstriptranslations: processing tree-puzzle (in debian/tree-puzzle); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/tree-ppuzzle/DEBIAN/control, package tree-ppuzzle, directory debian/tree-ppuzzle INFO: pkgstripfiles: waiting for lock (tree-ppuzzle) ... pkgstripfiles: processing control file: debian/tree-puzzle/DEBIAN/control, package tree-puzzle, directory debian/tree-puzzle pkgstripfiles: Truncating usr/share/doc/tree-puzzle/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-puzzle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-puzzle' in '../tree-puzzle_5.2-8build2_arm64.deb'. pkgstripfiles: Truncating usr/share/doc/tree-ppuzzle/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tree-ppuzzle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tree-ppuzzle' in '../tree-ppuzzle_5.2-8build2_arm64.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../tree-puzzle_5.2-8build2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build tree-puzzle-5.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161022-0235 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tree-puzzle_5.2-8build2_arm64.changes: -------------------------------------- Format: 1.8 Date: Sat, 22 Oct 2016 01:56:48 +0000 Source: tree-puzzle Binary: tree-puzzle tree-ppuzzle tree-puzzle-doc Architecture: arm64 Version: 5.2-8build2 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: tree-ppuzzle - Parallelized reconstruction of phylogenetic trees by maximum like tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood tree-puzzle-doc - Reconstruction of phylogenetic trees by maximum likelihood (doc) Changes: tree-puzzle (5.2-8build2) zesty; urgency=medium . * No-change rebuild against libopenmpi2 Checksums-Sha1: 197be62fba70a99fb55ae18dff006bf0291c0a73 186824 tree-ppuzzle-dbgsym_5.2-8build2_arm64.ddeb 4671562e54b917a605fd15c488b41fe052299b7b 115964 tree-ppuzzle_5.2-8build2_arm64.deb 4ceefad4a23d152cb0782b45a5e18315b47d9713 158134 tree-puzzle-dbgsym_5.2-8build2_arm64.ddeb 44546f6790f468a6fb732175d41f518bbd43f0e9 103202 tree-puzzle_5.2-8build2_arm64.deb Checksums-Sha256: 25f0d48530d253d3bc40a19e2b8afa17bb1b8ed9bc33f99c270e1f95b17c14ad 186824 tree-ppuzzle-dbgsym_5.2-8build2_arm64.ddeb f49c1f363a1d56540e020053386fea0244fed65489839589b0bed252947fbd7b 115964 tree-ppuzzle_5.2-8build2_arm64.deb 3d138fe1673135ec082e538a79923fd80d517a84a47ef3a80e4be28e2fb1dd43 158134 tree-puzzle-dbgsym_5.2-8build2_arm64.ddeb 9008526790179030d2018f74f9a5c041c6e6f6876d413bc6bab65bc0ba237682 103202 tree-puzzle_5.2-8build2_arm64.deb Files: 741f0e0f29482775846682ae92175073 186824 science extra tree-ppuzzle-dbgsym_5.2-8build2_arm64.ddeb 436bf056a16242753df7a5375b54fd69 115964 science optional tree-ppuzzle_5.2-8build2_arm64.deb f0f1b4a66539d916e4667867e485b1a9 158134 science extra tree-puzzle-dbgsym_5.2-8build2_arm64.ddeb b3c153cbb1c7d5be74170ab831e22d21 103202 science optional tree-puzzle_5.2-8build2_arm64.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tree-ppuzzle_5.2-8build2_arm64.deb ---------------------------------- new debian package, version 2.0. size 115964 bytes: control archive=1371 bytes. 1266 bytes, 26 lines control 621 bytes, 9 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: tree-ppuzzle Source: tree-puzzle Version: 5.2-8build2 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 281 Depends: libc6 (>= 2.17), libopenmpi2, libsprng2, openmpi-bin Recommends: tree-puzzle-doc Suggests: phylip, treetool Section: science Priority: optional Homepage: http://www.tree-puzzle.de Description: Parallelized reconstruction of phylogenetic trees by maximum likelihood TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. . This is the parallelized version of tree-puzzle. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2016-10-22 01:56 ./ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/bin/ -rwxr-xr-x root/root 260656 2016-10-22 01:56 ./usr/bin/tree-ppuzzle drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/doc/tree-ppuzzle/ -rw-r--r-- root/root 1063 2002-08-05 00:45 ./usr/share/doc/tree-ppuzzle/AUTHORS -rw-r--r-- root/root 1558 2004-07-01 02:39 ./usr/share/doc/tree-ppuzzle/README -rw-r--r-- root/root 411 2013-09-12 08:59 ./usr/share/doc/tree-ppuzzle/README.Debian -rw-r--r-- root/root 1639 2016-10-22 01:56 ./usr/share/doc/tree-ppuzzle/changelog.Debian.gz -rw-r--r-- root/root 1289 2015-11-25 12:52 ./usr/share/doc/tree-ppuzzle/copyright drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/man/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/man/man1/ -rw-r--r-- root/root 804 2016-10-22 01:56 ./usr/share/man/man1/tree-ppuzzle.1.gz drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/menu/ -rw-r--r-- root/root 276 2013-09-12 08:59 ./usr/share/menu/tree-ppuzzle drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/pixmaps/ -rw-r--r-- root/root 1292 2013-09-12 08:59 ./usr/share/pixmaps/tree-ppuzzle.xpm tree-puzzle_5.2-8build2_arm64.deb --------------------------------- new debian package, version 2.0. size 103202 bytes: control archive=1318 bytes. 1153 bytes, 23 lines control 612 bytes, 9 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: tree-puzzle Version: 5.2-8build2 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 249 Depends: libc6 (>= 2.17), libsprng2 Recommends: tree-puzzle-doc Suggests: phylip, treetool Section: science Priority: optional Homepage: http://www.tree-puzzle.de Description: Reconstruction of phylogenetic trees by maximum likelihood TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2016-10-22 01:56 ./ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/bin/ -rwxr-xr-x root/root 227736 2016-10-22 01:56 ./usr/bin/tree-puzzle drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/doc/tree-puzzle/ -rw-r--r-- root/root 1063 2002-08-05 00:45 ./usr/share/doc/tree-puzzle/AUTHORS -rw-r--r-- root/root 1558 2004-07-01 02:39 ./usr/share/doc/tree-puzzle/README -rw-r--r-- root/root 411 2013-09-12 08:59 ./usr/share/doc/tree-puzzle/README.Debian -rw-r--r-- root/root 1639 2016-10-22 01:56 ./usr/share/doc/tree-puzzle/changelog.Debian.gz -rw-r--r-- root/root 1289 2015-11-25 12:52 ./usr/share/doc/tree-puzzle/copyright drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/man/ drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/man/man1/ -rw-r--r-- root/root 798 2016-10-22 01:56 ./usr/share/man/man1/tree-puzzle.1.gz drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/menu/ -rw-r--r-- root/root 245 2013-09-12 08:59 ./usr/share/menu/tree-puzzle drwxr-xr-x root/root 0 2016-10-22 01:56 ./usr/share/pixmaps/ -rw-r--r-- root/root 1286 2013-09-12 08:59 ./usr/share/pixmaps/tree-puzzle.xpm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 13568 Build-Time: 81 Distribution: zesty-proposed Host Architecture: arm64 Install-Time: 19 Job: tree-puzzle_5.2-8build2.dsc Machine Architecture: arm64 Package: tree-puzzle Package-Time: 102 Source-Version: 5.2-8build2 Space: 13568 Status: successful Version: 5.2-8build2 -------------------------------------------------------------------------------- Finished at 20161022-0235 Build needed 00:01:42, 13568k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11057679'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11057679/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11057679'] Unmounting chroot for build PACKAGEBUILD-11057679... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11057679'] Removing build PACKAGEBUILD-11057679