https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-1/+build/15779519 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-006 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:10:28 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Dec 17:36:42 ntpdate[1820]: adjust time server 10.211.37.1 offset -0.001723 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15779519 /home/buildd/filecache-default/12198815be27835f4527655ec2ee7fabeb41ea11 Creating target for build PACKAGEBUILD-15779519 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15779519 Starting target for build PACKAGEBUILD-15779519 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15779519 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15779519 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15779519 Updating target for build PACKAGEBUILD-15779519 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [968 kB] Get:6 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8712 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5152 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [70.8 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [35.7 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [669 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [302 kB] Fetched 16.4 MB in 6s (2894 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg dpkg-dev libdpkg-perl libsqlite3-0 linux-libc-dev 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3376 kB of archives. After this operation, 66.6 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dpkg arm64 1.19.2ubuntu2 [1088 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.26.0-3 [491 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.19.0-9.10 [1021 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3376 kB in 0s (26.2 MB/s) (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_arm64.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.26.0-3_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.26.0-3) over (3.26.0-2) ... Preparing to unpack .../dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.19.0-9.10_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.19.0-9.10) over (4.18.0-11.12) ... Setting up linux-libc-dev:arm64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:arm64 (3.26.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15779519 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-15779519 --arch=arm64 --dist=disco-proposed --nolog trinityrnaseq_2.6.6+dfsg-1.dsc Initiating build PACKAGEBUILD-15779519 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:10:28 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-006.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-1 (arm64) 14 Dec 2018 17:37 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-1 Source Version: 2.6.6+dfsg-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/trinityrnaseq-PqyVK6/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-PqyVK6' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15779519/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sBCnom/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-sBCnom/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sBCnom/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sBCnom/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sBCnom/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-sBCnom/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (124 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sBCnom/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12645 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-ZpmBXN/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-ZpmBXN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ZpmBXN/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ZpmBXN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ZpmBXN/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-ZpmBXN/apt_archive ./ Packages [628 B] Fetched 3051 B in 0s (143 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-trinityrnaseq-dummy : Depends: bowtie2 but it is not installable Depends: salmon but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12645 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 0 Build-Time: 0 Distribution: disco-proposed Fail-Stage: install-deps Host Architecture: arm64 Install-Time: 0 Job: trinityrnaseq_2.6.6+dfsg-1.dsc Machine Architecture: arm64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.6.6+dfsg-1 Space: 0 Status: failed Version: 2.6.6+dfsg-1 -------------------------------------------------------------------------------- Finished at 20181214-1737 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15779519 Scanning for processes to kill in build PACKAGEBUILD-15779519