https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-1/+build/15779520 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-038 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:10:28 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Dec 17:36:42 ntpdate[1823]: adjust time server 10.211.37.1 offset -0.021131 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15779520 /home/buildd/filecache-default/a8e076447bc9c859868a26138221e631724b6c90 Creating target for build PACKAGEBUILD-15779520 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15779520 Starting target for build PACKAGEBUILD-15779520 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15779520 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15779520 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15779520 Updating target for build PACKAGEBUILD-15779520 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [958 kB] Get:6 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8654 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5152 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [68.3 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [35.7 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [653 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [302 kB] Fetched 16.3 MB in 6s (2606 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg dpkg-dev libdpkg-perl libsqlite3-0 linux-libc-dev 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3304 kB of archives. After this operation, 67.6 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dpkg armhf 1.19.2ubuntu2 [1056 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.26.0-3 [449 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.19.0-9.10 [1024 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3304 kB in 0s (19.5 MB/s) (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_armhf.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.26.0-3_armhf.deb ... Unpacking libsqlite3-0:armhf (3.26.0-3) over (3.26.0-2) ... Preparing to unpack .../dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.19.0-9.10_armhf.deb ... Unpacking linux-libc-dev:armhf (4.19.0-9.10) over (4.18.0-11.12) ... Setting up linux-libc-dev:armhf (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.26.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15779520 armhf disco-proposed -c chroot:build-PACKAGEBUILD-15779520 --arch=armhf --dist=disco-proposed --nolog trinityrnaseq_2.6.6+dfsg-1.dsc Initiating build PACKAGEBUILD-15779520 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:10:28 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-038.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-1 (armhf) 14 Dec 2018 17:37 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-1 Source Version: 2.6.6+dfsg-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/trinityrnaseq-7b73Z8/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-7b73Z8' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15779520/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HHT_fH/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-HHT_fH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HHT_fH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-HHT_fH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HHT_fH/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-HHT_fH/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (126 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HHT_fH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12405 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-bVPpC8/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-bVPpC8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bVPpC8/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-bVPpC8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bVPpC8/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-bVPpC8/apt_archive ./ Packages [628 B] Fetched 3051 B in 0s (137 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-trinityrnaseq-dummy : Depends: jellyfish (>= 2.1.4) but it is not installable Depends: parafly but it is not installable Depends: bowtie2 but it is not installable Depends: salmon but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12405 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 0 Build-Time: 0 Distribution: disco-proposed Fail-Stage: install-deps Host Architecture: armhf Install-Time: 0 Job: trinityrnaseq_2.6.6+dfsg-1.dsc Machine Architecture: arm64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.6.6+dfsg-1 Space: 0 Status: failed Version: 2.6.6+dfsg-1 -------------------------------------------------------------------------------- Finished at 20181214-1737 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15779520 Scanning for processes to kill in build PACKAGEBUILD-15779520