https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-1/+build/15779521 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-015 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:09:47 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Dec 17:10:31 ntpdate[1817]: adjust time server 10.211.37.1 offset -0.065976 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15779521 /home/buildd/filecache-default/1b8bd95dfc080fb8062b439d66609df4d6cce84f Creating target for build PACKAGEBUILD-15779521 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15779521 Starting target for build PACKAGEBUILD-15779521 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15779521 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15779521 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15779521 Updating target for build PACKAGEBUILD-15779521 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main i386 Packages [994 kB] Get:6 http://ftpmaster.internal/ubuntu disco/universe i386 Packages [8921 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5152 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main i386 Packages [60.7 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [32.0 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/universe i386 Packages [659 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [298 kB] Fetched 16.6 MB in 5s (3061 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg dpkg-dev libdpkg-perl libsqlite3-0 linux-libc-dev 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3507 kB of archives. After this operation, 67.6 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dpkg i386 1.19.2ubuntu2 [1124 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libsqlite3-0 i386 3.26.0-3 [566 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main i386 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main i386 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main i386 linux-libc-dev i386 4.19.0-9.10 [1041 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3507 kB in 0s (11.4 MB/s) (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_i386.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12659 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.26.0-3_i386.deb ... Unpacking libsqlite3-0:i386 (3.26.0-3) over (3.26.0-2) ... Preparing to unpack .../dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.19.0-9.10_i386.deb ... Unpacking linux-libc-dev:i386 (4.19.0-9.10) over (4.18.0-11.12) ... Setting up linux-libc-dev:i386 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:i386 (3.26.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15779521 i386 disco-proposed -c chroot:build-PACKAGEBUILD-15779521 --arch=i386 --dist=disco-proposed --nolog trinityrnaseq_2.6.6+dfsg-1.dsc Initiating build PACKAGEBUILD-15779521 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:09:47 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-015.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-1 (i386) 14 Dec 2018 17:10 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-1 Source Version: 2.6.6+dfsg-1 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/trinityrnaseq-ua8K30/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-ua8K30' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15779521/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-iSPg_3/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-iSPg_3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-iSPg_3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-iSPg_3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-iSPg_3/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-iSPg_3/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (83.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-iSPg_3/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12662 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-Bb6TrX/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-Bb6TrX/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Bb6TrX/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Bb6TrX/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Bb6TrX/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-Bb6TrX/apt_archive ./ Packages [628 B] Fetched 3051 B in 0s (211 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-trinityrnaseq-dummy : Depends: jellyfish (>= 2.1.4) but it is not installable Depends: parafly but it is not installable Depends: bowtie2 but it is not installable Depends: salmon but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12662 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 0 Build-Time: 0 Distribution: disco-proposed Fail-Stage: install-deps Host Architecture: i386 Install-Time: 0 Job: trinityrnaseq_2.6.6+dfsg-1.dsc Machine Architecture: amd64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.6.6+dfsg-1 Space: 0 Status: failed Version: 2.6.6+dfsg-1 -------------------------------------------------------------------------------- Finished at 20181214-1710 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=i386 PACKAGEBUILD-15779521 Scanning for processes to kill in build PACKAGEBUILD-15779521