https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-3/+build/16221641 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-030 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Jan 23:12:12 ntpdate[1801]: adjust time server 10.211.37.1 offset -0.001976 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16221641 /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e Creating target for build PACKAGEBUILD-16221641 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16221641 Starting target for build PACKAGEBUILD-16221641 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16221641 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16221641 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16221641 Updating target for build PACKAGEBUILD-16221641 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1006 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [9021 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5177 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [102 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [43.1 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [388 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [202 kB] Fetched 16.9 MB in 5s (3167 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-x86-64-linux-gnu cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 libmpx2 libpng16-16 libquadmath0 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sed tzdata 45 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 39.2 MB of archives. After this operation, 134 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dash amd64 0.5.10.2-4 [85.8 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.7-1 [190 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgnutls30 amd64 3.6.5-2ubuntu1 [759 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libubsan1 amd64 8.2.0-13ubuntu1 [121 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libtsan0 amd64 8.2.0-13ubuntu1 [288 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8-base amd64 8.2.0-13ubuntu1 [18.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc1 amd64 1:8.2.0-13ubuntu1 [40.8 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgomp1 amd64 8.2.0-13ubuntu1 [76.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libitm1 amd64 8.2.0-13ubuntu1 [28.1 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libatomic1 amd64 8.2.0-13ubuntu1 [9056 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libasan5 amd64 8.2.0-13ubuntu1 [364 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblsan0 amd64 8.2.0-13ubuntu1 [132 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libmpx2 amd64 8.2.0-13ubuntu1 [11.7 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libquadmath0 amd64 8.2.0-13ubuntu1 [134 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 cpp-8 amd64 8.2.0-13ubuntu1 [7221 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcc1-0 amd64 8.2.0-13ubuntu1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 g++-8 amd64 8.2.0-13ubuntu1 [8113 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8 amd64 8.2.0-13ubuntu1 [8004 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc-8-dev amd64 8.2.0-13ubuntu1 [2304 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++-8-dev amd64 8.2.0-13ubuntu1 [1538 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++6 amd64 8.2.0-13ubuntu1 [398 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libbinutils amd64 2.31.1-11ubuntu1 [484 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-common amd64 2.31.1-11ubuntu1 [194 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils amd64 2.31.1-11ubuntu1 [3396 B] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-11ubuntu1 [1829 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 libzstd1 amd64 1.3.5+dfsg-2 [221 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha3 [816 kB] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 apt amd64 1.8.0~alpha3 [1165 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.5-1 [159 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.5-1 [514 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init amd64 1.56+nmu1 [6080 B] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgpg-error0 amd64 1.33-3 [57.4 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.5-1 [9372 B] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.5-1 [11.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1 [530 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018i-1 [189 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpng16-16 amd64 1.6.36-2 [179 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.5-1 [2704 B] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libassuan0 amd64 2.5.2-1 [35.1 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.5-1 [2700 B] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-9.10 [1041 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.2 MB in 17s (2286 kB/s) (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_amd64.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_amd64.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_amd64.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:amd64 (3.6.5-2ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-13ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../libtsan0_8.2.0-13ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-13ubuntu1_amd64.deb ... Unpacking gcc-8-base:amd64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:amd64 (8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-13ubuntu1_amd64.deb ... Unpacking libgcc1:amd64 (1:8.2.0-13ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:amd64 (1:8.2.0-13ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 1 23:12:47 UTC 2019. Universal Time is now: Tue Jan 1 23:12:47 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up libtsan0:amd64 (8.2.0-13ubuntu1) ... Setting up linux-libc-dev:amd64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-common:amd64 (2.31.1-11ubuntu1) ... Setting up libmpx2:amd64 (8.2.0-13ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:amd64 (1.44.5-1) ... Setting up libasan5:amd64 (8.2.0-13ubuntu1) ... Setting up libassuan0:amd64 (2.5.2-1) ... Setting up libitm1:amd64 (8.2.0-13ubuntu1) ... Setting up libubsan1:amd64 (8.2.0-13ubuntu1) ... Setting up libbinutils:amd64 (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:amd64 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16221641 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-16221641 --arch=amd64 --dist=disco-proposed --nolog -A trinityrnaseq_2.6.6+dfsg-3.dsc Initiating build PACKAGEBUILD-16221641 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:40:15 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-030.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-3 (amd64) 01 Jan 2019 23:12 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-3 Source Version: 2.6.6+dfsg-3 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/trinityrnaseq-Jhn2W_/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-Jhn2W_' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16221641/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Ace7Fc/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Ace7Fc/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ace7Fc/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Ace7Fc/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ace7Fc/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Ace7Fc/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Ace7Fc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12669 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-h3Pu4G/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-h3Pu4G/apt_archive ./ InRelease Get:2 copy:/<>/resolver-h3Pu4G/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-h3Pu4G/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-h3Pu4G/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-h3Pu4G/apt_archive ./ Packages [627 B] Fetched 3050 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bowtie2 bsdmainutils ca-certificates-java dbus dbus-user-session dconf-gsettings-backend dconf-service dctrl-tools debhelper default-jdk default-jdk-headless default-jre default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dirmngr dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-roboto-slab gettext gettext-base glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg-wks-client gpg-wks-server gpgsm groff-base gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian jaligner java-common javahelper jellyfish libapache-pom-java libarchive-zip-perl libasn1-8-heimdal libasound2 libasound2-data libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libboost-filesystem1.67.0 libboost-iostreams1.67.0 libboost-program-options1.67.0 libboost-system1.67.0 libbsd0 libcairo-gobject2 libcairo2 libclass-method-modifiers-perl libcolord2 libcolt-free-java libcommons-collections4-java libcommons-parent-java libconcurrent-java libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdevel-callchecker-perl libdevel-globaldestruction-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libepoxy0 libexpat1 libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-java libgif7 libgl1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgtk-3-0 libgtk-3-common libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts-dev libhts2 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libicu63 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libjbig0 libjellyfish-2.0-2 libjemalloc2 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-glib-1.0-0 libjson-glib-1.0-common libjung-free-java libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmodule-runtime-perl libmoo-perl libmpdec2 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnspr4 libnss3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libpciaccess0 libpcsclite1 libpipeline1 libpixman-1-0 libproxy1v5 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librest-0.7-0 libroken18-heimdal librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsigsegv2 libsoup-gnome2.4-1 libsoup2.4-1 libstaden-read13 libstrictures-perl libsub-exporter-progressive-perl libsub-quote-perl libtbb2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libvecmath-java libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwind0-heimdal libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db mime-support netbase openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless parafly patchutils perl-openssl-defaults po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-minimal python3.7 python3.7-minimal salmon shared-mime-info sphinx-rtd-theme-common ubuntu-mono ucf wdiff x11-common xkb-data zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bowtie2-examples wamerican | wordlist whois vacation debtags dh-make adequate autopkgtest bls-standalone bsd-mailx | mailx check-all-the-things cvs-buildpackage devscripts-el diffoscope disorderfs dose-extra duck faketime gnuplot how-can-i-help libauthen-sasl-perl libdbd-pg-perl libfile-desktopentry-perl libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts mutt piuparts postgresql-client quilt ratt reprotest ssh-client svn-buildpackage w3m debian-keyring equivs libsoap-lite-perl pinentry-gnome3 tor fonts-roboto gettext-doc libasprintf-dev libgettextpo-dev parcimonie xloadimage groff cvs gawk tofrodos libasound2-plugins alsa-utils colord libcommons-collections4-java-doc cups-common libgetopt-java-doc krb5-doc krb5-user gvfs libdata-dump-perl liblcms2-utils libcrypt-ssleay-perl liblzma-doc libscalar-number-perl pciutils pcscd librsvg2-bin lm-sensors libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl m4-doc apparmor less www-browser openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc wdiff-doc Recommended packages: at dput | dupload libdistro-info-perl libgit-wrapper-perl liblist-compare-perl libstring-shellquote-perl licensecheck lintian python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget | curl curl | wget | lynx at-spi2-core libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgtk-3-bin libhtml-format-perl javascript-common krb5-locales libclass-xsaccessor-perl libsub-name-perl publicsuffix libsasl2-modules libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxt-dev libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bowtie2 bsdmainutils ca-certificates-java dbus dbus-user-session dconf-gsettings-backend dconf-service dctrl-tools debhelper default-jdk default-jdk-headless default-jre default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dirmngr dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-roboto-slab gettext gettext-base glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg-wks-client gpg-wks-server gpgsm groff-base gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian jaligner java-common javahelper jellyfish libapache-pom-java libarchive-zip-perl libasn1-8-heimdal libasound2 libasound2-data libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libboost-filesystem1.67.0 libboost-iostreams1.67.0 libboost-program-options1.67.0 libboost-system1.67.0 libbsd0 libcairo-gobject2 libcairo2 libclass-method-modifiers-perl libcolord2 libcolt-free-java libcommons-collections4-java libcommons-parent-java libconcurrent-java libcroco3 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdevel-callchecker-perl libdevel-globaldestruction-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libepoxy0 libexpat1 libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgetopt-java libgif7 libgl1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgtk-3-0 libgtk-3-common libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts-dev libhts2 libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libicu63 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libjbig0 libjellyfish-2.0-2 libjemalloc2 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-glib-1.0-0 libjson-glib-1.0-common libjung-free-java libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmodule-runtime-perl libmoo-perl libmpdec2 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnspr4 libnss3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libpciaccess0 libpcsclite1 libpipeline1 libpixman-1-0 libproxy1v5 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librest-0.7-0 libroken18-heimdal librole-tiny-perl librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsigsegv2 libsoup-gnome2.4-1 libsoup2.4-1 libstaden-read13 libstrictures-perl libsub-exporter-progressive-perl libsub-quote-perl libtbb2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libvecmath-java libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwind0-heimdal libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db mime-support netbase openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless parafly patchutils perl-openssl-defaults po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-minimal python3.7 python3.7-minimal salmon sbuild-build-depends-trinityrnaseq-dummy shared-mime-info sphinx-rtd-theme-common ubuntu-mono ucf wdiff x11-common xkb-data zlib1g-dev 0 upgraded, 287 newly installed, 0 to remove and 0 not upgraded. Need to get 343 MB of archives. After this operation, 872 MB of additional disk space will be used. Get:1 copy:/<>/resolver-h3Pu4G/apt_archive ./ sbuild-build-depends-trinityrnaseq-dummy 0.invalid.0 [960 B] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 libpython3.7-minimal amd64 3.7.2~rc1-1 [545 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 libexpat1 amd64 2.2.6-1 [87.2 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 python3.7-minimal amd64 3.7.2~rc1-1 [1685 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 python3-minimal amd64 3.7.1-1ubuntu1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libmpdec2 amd64 2.4.2-2 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 libpython3.7-stdlib amd64 3.7.2~rc1-1 [1732 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 python3.7 amd64 3.7.2~rc1-1 [277 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 libpython3-stdlib amd64 3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 python3 amd64 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb1 amd64 1.13.1-2 [45.2 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-data all 2:1.6.7-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-6 amd64 2:1.6.7-1 [572 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:20 http://ftpmaster.internal/ubuntu disco/universe amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 groff-base amd64 1.22.4-1 [861 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libpipeline1 amd64 1.5.0-2 [25.7 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 man-db amd64 2.8.4-3 [1028 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libpython2.7-minimal amd64 2.7.15-5 [335 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 python2.7-minimal amd64 2.7.15-5 [1308 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 python2-minimal amd64 2.7.15-3 [28.1 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 python-minimal amd64 2.7.15-3 [5996 B] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libpython2.7-stdlib amd64 2.7.15-5 [1909 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 python2.7 amd64 2.7.15-5 [239 kB] Get:32 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libfribidi0 amd64 1.0.5-3 [26.1 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libglib2.0-0 amd64 2.58.1-2 [1176 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libicu63 amd64 63.1-5 [8284 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libpam-systemd amd64 239-7ubuntu15 [114 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libxml2 amd64 2.9.4+dfsg1-7ubuntu3 [625 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 netbase all 5.5 [12.9 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 shared-mime-info amd64 1.10-1 [428 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 ucf all 3.0038+nmu1 [51.6 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 xkb-data all 2.23.1-1ubuntu1.18.10.1 [325 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 gettext-base amd64 0.19.8.1-9 [50.1 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libdrm-common all 2.4.95-1 [5000 B] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 libdrm2 amd64 2.4.95-1 [30.6 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libedit2 amd64 3.1-20181209-1 [85.9 kB] Get:55 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkrb5support0 amd64 1.16.2-1 [31.2 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libk5crypto3 amd64 1.16.2-1 [85.5 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libkeyutils1 amd64 1.5.9-9.3 [9640 B] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkrb5-3 amd64 1.16.2-1 [282 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgssapi-krb5-2 amd64 1.16.2-1 [122 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 hicolor-icon-theme all 0.17-2 [9976 B] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8 amd64 2.0.0-0ubuntu2 [117 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libtiff5 amd64 4.0.10-3 [157 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 libgdk-pixbuf2.0-common all 2.38.0+dfsg-7 [6080 B] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 libgdk-pixbuf2.0-0 amd64 2.38.0+dfsg-7 [170 kB] Get:69 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gtk-update-icon-cache amd64 3.24.2-2ubuntu2 [27.7 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 libfontconfig1 amd64 2.13.0-5ubuntu3 [112 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 libpixman-1-0 amd64 0.36.0-1 [229 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-render0 amd64 1.13.1-2 [14.8 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-shm0 amd64 1.13.1-2 [5548 B] Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:78 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcairo2 amd64 1.16.0-2 [585 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-3 [81.4 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig amd64 2.13.0-5ubuntu3 [170 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 libthai-data all 0.1.28-1 [134 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 libdatrie1 amd64 0.2.12-1 [18.3 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 libthai0 amd64 0.1.28-1 [18.0 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 libpango-1.0-0 amd64 1.42.4-6 [155 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main amd64 libgraphite2-3 amd64 1.3.12-1 [73.6 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main amd64 libharfbuzz0b amd64 2.3.0-1 [365 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main amd64 libpangoft2-1.0-0 amd64 1.42.4-6 [35.6 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main amd64 libpangocairo-1.0-0 amd64 1.42.4-6 [23.2 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main amd64 librsvg2-2 amd64 2.44.10-1 [1245 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main amd64 librsvg2-common amd64 2.44.10-1 [9112 B] Get:91 http://ftpmaster.internal/ubuntu disco/main amd64 humanity-icon-theme all 0.6.15 [1250 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main amd64 ubuntu-mono all 16.10+18.10.20181005-0ubuntu1 [149 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main amd64 adwaita-icon-theme all 3.30.0-0ubuntu1 [3253 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main amd64 m4 amd64 1.4.18-2 [199 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main amd64 autoconf all 2.69-11 [322 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main amd64 automake all 1:1.16.1-4 [522 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main amd64 autopoint all 0.19.8.1-9 [412 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main amd64 java-common all 0.71 [6752 B] Get:101 http://ftpmaster.internal/ubuntu disco/main amd64 libavahi-common-data amd64 0.7-4ubuntu4 [21.4 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main amd64 libavahi-common3 amd64 0.7-4ubuntu4 [21.5 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main amd64 libavahi-client3 amd64 0.7-4ubuntu4 [25.2 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main amd64 libcups2 amd64 2.2.10-3 [212 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 liblcms2-2 amd64 2.9-3 [139 kB] Get:106 http://ftpmaster.internal/ubuntu disco/main amd64 libnspr4 amd64 2:4.20-1ubuntu1 [107 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main amd64 libnss3 amd64 2:3.39-1ubuntu1 [1139 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main amd64 libasound2-data all 1.1.7-2ubuntu0.1 [38.7 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main amd64 libasound2 amd64 1.1.7-2ubuntu0.1 [340 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main amd64 libpcsclite1 amd64 1.8.24-1 [21.8 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main amd64 libxi6 amd64 2:1.7.9-1 [29.2 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main amd64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main amd64 libxtst6 amd64 2:1.2.3-1 [12.8 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main amd64 openjdk-11-jre-headless amd64 11.0.1+13-3ubuntu1 [36.9 MB] Get:115 http://ftpmaster.internal/ubuntu disco/main amd64 default-jre-headless amd64 2:1.11-71 [3188 B] Get:116 http://ftpmaster.internal/ubuntu disco/main amd64 ca-certificates-java all 20180516ubuntu1 [12.3 kB] Get:117 http://ftpmaster.internal/ubuntu disco/main amd64 dbus-user-session amd64 1.12.10-1ubuntu2 [9428 B] Get:118 http://ftpmaster.internal/ubuntu disco/main amd64 libdconf1 amd64 0.30.1-2 [35.9 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main amd64 dconf-service amd64 0.30.1-2 [29.2 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main amd64 dconf-gsettings-backend amd64 0.30.1-2 [21.9 kB] Get:121 http://ftpmaster.internal/ubuntu disco/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main amd64 libtool all 2.4.6-6 [195 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main amd64 dh-autoreconf all 19 [16.1 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main amd64 dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:127 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-3 [78.1 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB] Get:131 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 debhelper all 12ubuntu1 [887 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main amd64 libatk1.0-data all 2.30.0-2 [3032 B] Get:133 http://ftpmaster.internal/ubuntu disco/main amd64 libatk1.0-0 amd64 2.30.0-2 [44.5 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main amd64 libatspi2.0-0 amd64 2.30.0-5 [59.8 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main amd64 libatk-bridge2.0-0 amd64 2.30.0-2 [56.8 kB] Get:136 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libcairo-gobject2 amd64 1.16.0-2 [17.2 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main amd64 libcolord2 amd64 1.4.3-3 [131 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main amd64 libepoxy0 amd64 1.5.3-0.1 [188 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main amd64 libjson-glib-1.0-common all 1.4.4-2 [3496 B] Get:140 http://ftpmaster.internal/ubuntu disco/main amd64 libjson-glib-1.0-0 amd64 1.4.4-2 [58.8 kB] Get:141 http://ftpmaster.internal/ubuntu disco/main amd64 libproxy1v5 amd64 0.4.15-5 [50.4 kB] Get:142 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 glib-networking-common all 2.58.0-2 [3580 B] Get:143 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 glib-networking-services amd64 2.58.0-2 [8920 B] Get:144 http://ftpmaster.internal/ubuntu disco/main amd64 gsettings-desktop-schemas all 3.28.1-1ubuntu1 [27.7 kB] Get:145 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 glib-networking amd64 2.58.0-2 [48.0 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main amd64 libsoup2.4-1 amd64 2.64.2-2 [240 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main amd64 libsoup-gnome2.4-1 amd64 2.64.2-2 [5156 B] Get:148 http://ftpmaster.internal/ubuntu disco/main amd64 librest-0.7-0 amd64 0.8.1-1 [32.2 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main amd64 libwayland-client0 amd64 1.16.0-1ubuntu2 [23.6 kB] Get:150 http://ftpmaster.internal/ubuntu disco/main amd64 libwayland-cursor0 amd64 1.16.0-1ubuntu2 [9960 B] Get:151 http://ftpmaster.internal/ubuntu disco/main amd64 libwayland-egl1 amd64 1.16.0-1ubuntu2 [5588 B] Get:152 http://ftpmaster.internal/ubuntu disco/main amd64 libxcomposite1 amd64 1:0.4.4-2 [6988 B] Get:153 http://ftpmaster.internal/ubuntu disco/main amd64 libxfixes3 amd64 1:5.0.3-1 [10.8 kB] Get:154 http://ftpmaster.internal/ubuntu disco/main amd64 libxcursor1 amd64 1:1.1.15-2 [19.8 kB] Get:155 http://ftpmaster.internal/ubuntu disco/main amd64 libxdamage1 amd64 1:1.1.4-3 [6934 B] Get:156 http://ftpmaster.internal/ubuntu disco/main amd64 libxinerama1 amd64 2:1.1.4-1 [7080 B] Get:157 http://ftpmaster.internal/ubuntu disco/main amd64 libxkbcommon0 amd64 0.8.2-1 [97.8 kB] Get:158 http://ftpmaster.internal/ubuntu disco/main amd64 libxrandr2 amd64 2:1.5.1-1 [18.1 kB] Get:159 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgtk-3-common all 3.24.2-2ubuntu2 [230 kB] Get:160 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgtk-3-0 amd64 3.24.2-2ubuntu2 [2536 kB] Get:161 http://ftpmaster.internal/ubuntu disco/main amd64 libglvnd0 amd64 1.1.0-1 [47.6 kB] Get:162 http://ftpmaster.internal/ubuntu disco/main amd64 libglapi-mesa amd64 18.2.6-1ubuntu1 [24.9 kB] Get:163 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-xcb1 amd64 2:1.6.7-1 [9204 B] Get:164 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [6892 B] Get:165 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [6488 B] Get:166 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-glx0 amd64 1.13.1-2 [21.9 kB] Get:167 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-present0 amd64 1.13.1-2 [5544 B] Get:168 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-sync1 amd64 1.13.1-2 [8832 B] Get:169 http://ftpmaster.internal/ubuntu disco/main amd64 libxshmfence1 amd64 1.3-1 [5028 B] Get:170 http://ftpmaster.internal/ubuntu disco/main amd64 libdrm-amdgpu1 amd64 2.4.95-1 [17.4 kB] Get:171 http://ftpmaster.internal/ubuntu disco/main amd64 libpciaccess0 amd64 0.14-1 [17.9 kB] Get:172 http://ftpmaster.internal/ubuntu disco/main amd64 libdrm-intel1 amd64 2.4.95-1 [60.0 kB] Get:173 http://ftpmaster.internal/ubuntu disco/main amd64 libdrm-nouveau2 amd64 2.4.95-1 [16.5 kB] Get:174 http://ftpmaster.internal/ubuntu disco/main amd64 libdrm-radeon1 amd64 2.4.95-1 [21.4 kB] Get:175 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libllvm7 amd64 1:7.0.1-1ubuntu1 [13.0 MB] Get:176 http://ftpmaster.internal/ubuntu disco/main amd64 libsensors4 amd64 1:3.4.0-4 [28.8 kB] Get:177 http://ftpmaster.internal/ubuntu disco/main amd64 libgl1-mesa-dri amd64 18.2.6-1ubuntu1 [6585 kB] Get:178 http://ftpmaster.internal/ubuntu disco/main amd64 libglx-mesa0 amd64 18.2.6-1ubuntu1 [136 kB] Get:179 http://ftpmaster.internal/ubuntu disco/main amd64 libglx0 amd64 1.1.0-1 [28.2 kB] Get:180 http://ftpmaster.internal/ubuntu disco/main amd64 libgl1 amd64 1.1.0-1 [88.7 kB] Get:181 http://ftpmaster.internal/ubuntu disco/main amd64 libgl1-mesa-glx amd64 18.2.6-1ubuntu1 [5384 B] Get:182 http://ftpmaster.internal/ubuntu disco/main amd64 libgif7 amd64 5.1.4-3 [30.6 kB] Get:183 http://ftpmaster.internal/ubuntu disco/main amd64 openjdk-11-jre amd64 11.0.1+13-3ubuntu1 [34.4 kB] Get:184 http://ftpmaster.internal/ubuntu disco/main amd64 default-jre amd64 2:1.11-71 [1084 B] Get:185 http://ftpmaster.internal/ubuntu disco/main amd64 openjdk-11-jdk-headless amd64 11.0.1+13-3ubuntu1 [217 MB] Get:186 http://ftpmaster.internal/ubuntu disco/main amd64 default-jdk-headless amd64 2:1.11-71 [1144 B] Get:187 http://ftpmaster.internal/ubuntu disco/main amd64 openjdk-11-jdk amd64 11.0.1+13-3ubuntu1 [1892 kB] Get:188 http://ftpmaster.internal/ubuntu disco/main amd64 default-jdk amd64 2:1.11-71 [1096 B] Get:189 http://ftpmaster.internal/ubuntu disco/main amd64 libksba8 amd64 1.3.5-2 [92.6 kB] Get:190 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB] Get:191 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB] Get:192 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB] Get:193 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB] Get:194 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB] Get:195 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB] Get:196 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB] Get:197 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB] Get:198 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB] Get:199 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:200 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:201 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB] Get:202 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu3 [154 kB] Get:203 http://ftpmaster.internal/ubuntu disco/main amd64 dirmngr amd64 2.2.8-3ubuntu1 [321 kB] Get:204 http://ftpmaster.internal/ubuntu disco/main amd64 gnupg-l10n all 2.2.8-3ubuntu1 [49.1 kB] Get:205 http://ftpmaster.internal/ubuntu disco/main amd64 gnupg-utils amd64 2.2.8-3ubuntu1 [127 kB] Get:206 http://ftpmaster.internal/ubuntu disco/main amd64 gpg-wks-client amd64 2.2.8-3ubuntu1 [93.0 kB] Get:207 http://ftpmaster.internal/ubuntu disco/main amd64 gpg-wks-server amd64 2.2.8-3ubuntu1 [88.3 kB] Get:208 http://ftpmaster.internal/ubuntu disco/main amd64 gpgsm amd64 2.2.8-3ubuntu1 [215 kB] Get:209 http://ftpmaster.internal/ubuntu disco/main amd64 gnupg all 2.2.8-3ubuntu1 [251 kB] Get:210 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-which-perl all 1.22-1 [12.0 kB] Get:211 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] Get:212 http://ftpmaster.internal/ubuntu disco/main amd64 libio-pty-perl amd64 1:1.08-1.1build5 [30.0 kB] Get:213 http://ftpmaster.internal/ubuntu disco/main amd64 libipc-run-perl all 20180523.0-1 [89.7 kB] Get:214 http://ftpmaster.internal/ubuntu disco/main amd64 libclass-method-modifiers-perl all 2.12-1 [15.7 kB] Get:215 http://ftpmaster.internal/ubuntu disco/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:216 http://ftpmaster.internal/ubuntu disco/main amd64 libdevel-globaldestruction-perl all 0.14-1 [6752 B] Get:217 http://ftpmaster.internal/ubuntu disco/main amd64 libb-hooks-op-check-perl amd64 0.22-1build1 [10.1 kB] Get:218 http://ftpmaster.internal/ubuntu disco/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] Get:219 http://ftpmaster.internal/ubuntu disco/main amd64 libdevel-callchecker-perl amd64 0.007-2build2 [14.1 kB] Get:220 http://ftpmaster.internal/ubuntu disco/main amd64 libparams-classify-perl amd64 0.015-1build1 [21.0 kB] Get:221 http://ftpmaster.internal/ubuntu disco/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:222 http://ftpmaster.internal/ubuntu disco/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] Get:223 http://ftpmaster.internal/ubuntu disco/main amd64 librole-tiny-perl all 2.000006-1 [15.9 kB] Get:224 http://ftpmaster.internal/ubuntu disco/main amd64 libstrictures-perl all 2.000005-1 [16.3 kB] Get:225 http://ftpmaster.internal/ubuntu disco/main amd64 libsub-quote-perl all 2.005001-1 [17.1 kB] Get:226 http://ftpmaster.internal/ubuntu disco/main amd64 libmoo-perl all 2.003004-2 [45.6 kB] Get:227 http://ftpmaster.internal/ubuntu disco/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] Get:228 http://ftpmaster.internal/ubuntu disco/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:229 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] Get:230 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-listing-perl all 6.04-1 [9774 B] Get:231 http://ftpmaster.internal/ubuntu disco/main amd64 libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:232 http://ftpmaster.internal/ubuntu disco/main amd64 liburi-perl all 1.74-1 [77.1 kB] Get:233 http://ftpmaster.internal/ubuntu disco/main amd64 libhtml-parser-perl amd64 3.72-3build2 [86.2 kB] Get:234 http://ftpmaster.internal/ubuntu disco/main amd64 libhtml-tree-perl all 5.07-1 [200 kB] Get:235 http://ftpmaster.internal/ubuntu disco/main amd64 libio-html-perl all 1.001-1 [14.9 kB] Get:236 http://ftpmaster.internal/ubuntu disco/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:237 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-message-perl all 6.18-1 [75.3 kB] Get:238 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-cookies-perl all 6.04-1 [17.2 kB] Get:239 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-negotiate-perl all 6.01-1 [12.5 kB] Get:240 http://ftpmaster.internal/ubuntu disco/main amd64 perl-openssl-defaults amd64 3build1 [7012 B] Get:241 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Setting up libsigsegv2:amd64 (2.12-2) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up perl-openssl-defaults:amd64 (3build1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libelf1:amd64 (0.175-2) ... Setting up libb-hooks-op-check-perl (0.22-1build1) ... Setting up libglib2.0-0:amd64 (2.58.1-2) ... Setting up libasound2-data (1.1.7-2ubuntu0.1) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libwayland-client0:amd64 (1.16.0-1ubuntu2) ... Setting up xkb-data (2.23.1-1ubuntu1.18.10.1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libproxy1v5:amd64 (0.4.15-5) ... Setting up java-common (0.71) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up parafly (0.0.2013.01.21-4) ... Setting up libjs-sphinxdoc (1.7.9-1) ... Setting up dctrl-tools (2.24-3) ... Setting up libgdk-pixbuf2.0-common (2.38.0+dfsg-7) ... Setting up glib-networking-services (2.58.0-2) ... Setting up libdatrie1:amd64 (0.2.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up libjpeg-turbo8:amd64 (2.0.0-0ubuntu2) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libglapi-mesa:amd64 (18.2.6-1ubuntu1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up gpg-wks-server (2.2.8-3ubuntu1) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libboost-program-options1.67.0:amd64 (1.67.0-11) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up libnspr4:amd64 (2:4.20-1ubuntu1) ... Setting up ucf (3.0038+nmu1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libfreetype6:amd64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up gnupg-l10n (2.2.8-3ubuntu1) ... Setting up libasound2:amd64 (1.1.7-2ubuntu0.1) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libdrm-common (2.4.95-1) ... Setting up libjson-glib-1.0-0:amd64 (1.4.4-2) ... Setting up libgraphite2-3:amd64 (1.3.12-1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up fonts-lato (2.0-2) ... Setting up libatk1.0-data (2.30.0-2) ... Setting up libstrictures-perl (2.000005-1) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libvecmath-java (1.5.2-7) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up patchutils (0.3.4-2) ... Setting up libepoxy0:amd64 (1.5.3-0.1) ... Setting up autotools-dev (20180224.1) ... Setting up liburi-perl (1.74-1) ... Setting up libatk1.0-0:amd64 (2.30.0-2) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up gpgsm (2.2.8-3ubuntu1) ... Processing triggers for systemd (239-7ubuntu15) ... Setting up libhtml-parser-perl (3.72-3build2) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libapache-pom-java (18-1) ... Setting up gnupg-utils (2.2.8-3ubuntu1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libdconf1:amd64 (0.30.1-2) ... Setting up libfribidi0:amd64 (1.0.5-3) ... Setting up wdiff (1.2.2-2build1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up shared-mime-info (1.10-1) ... Setting up libxkbcommon0:amd64 (0.8.2-1) ... Setting up libnet-http-perl (6.18-1) ... Setting up libcolord2:amd64 (1.4.3-3) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:amd64 (5.2.2-1.3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Setting up libboost-system1.67.0:amd64 (1.67.0-11) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libgetopt-java (1.0.14+dfsg-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libwayland-cursor0:amd64 (1.16.0-1ubuntu2) ... Setting up fonts-roboto-slab (1.100263+20170512-1) ... Setting up libjs-modernizr (2.6.2+ds1-1ubuntu1) ... Setting up libwayland-egl1:amd64 (1.16.0-1ubuntu2) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-5) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libjellyfish-2.0-2:amd64 (2.2.10-2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libdbus-1-3:amd64 (1.12.10-1ubuntu2) ... Setting up libavahi-common-data:amd64 (0.7-4ubuntu4) ... Setting up netbase (5.5) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.2~rc1-1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-9) ... Setting up libnet-ssleay-perl (1.85-2ubuntu3) ... Setting up libllvm7:amd64 (1:7.0.1-1ubuntu1) ... Setting up libboost-filesystem1.67.0:amd64 (1.67.0-11) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up groff-base (1.22.4-1) ... Setting up libdevel-callchecker-perl (0.007-2build2) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up python2.7 (2.7.15-5) ... Setting up libnss3:amd64 (2:3.39-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (2.3.0-1) ... Setting up libtiff5:amd64 (4.0.10-3) ... Setting up python3.7 (3.7.2~rc1-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.28-1) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libhtml-tree-perl (5.07-1) ... Setting up libdrm2:amd64 (2.4.95-1) ... Setting up libcommons-parent-java (43-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:amd64 (2.4.95-1) ... Setting up jellyfish (2.2.10-2) ... Setting up sphinx-rtd-theme-common (0.4.2+dfsg-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.18-1) ... Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libavahi-common3:amd64 (0.7-4ubuntu4) ... Setting up libdrm-radeon1:amd64 (2.4.95-1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up dbus (1.12.10-1ubuntu2) ... Setting up libdrm-nouveau2:amd64 (2.4.95-1) ... Setting up libparams-classify-perl (0.015-1build1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:amd64 (3.7.1-1ubuntu1) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libfontconfig1:amd64 (2.13.0-5ubuntu3) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libpam-systemd:amd64 (239-7ubuntu15) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up libdrm-amdgpu1:amd64 (2.4.95-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libgl1-mesa-dri:amd64 (18.2.6-1ubuntu1) ... Setting up libcommons-collections4-java (4.2-1) ... Setting up python2 (2.7.15-3) ... Setting up dbus-user-session (1.12.10-1ubuntu2) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.7-4ubuntu4) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up python (2.7.15-3) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up libcups2:amd64 (2.2.10-3) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up dconf-service (0.30.1-2) ... Setting up libatspi2.0-0:amd64 (2.30.0-5) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.38.0+dfsg-7) ... Setting up bowtie2 (2.3.4.3-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up gtk-update-icon-cache (3.24.2-2ubuntu2) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu3) ... Setting up libpango-1.0-0:amd64 (1.42.4-6) ... Setting up libatk-bridge2.0-0:amd64 (2.30.0-2) ... Setting up libmoo-perl (2.003004-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1) ... Setting up dirmngr (2.2.8-3ubuntu1) ... Setting up dconf-gsettings-backend:amd64 (0.30.1-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libglx-mesa0:amd64 (18.2.6-1ubuntu1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libcairo2:amd64 (1.16.0-2) ... Setting up libxinerama1:amd64 (2:1.1.4-1) ... Setting up gsettings-desktop-schemas (3.28.1-1ubuntu1) ... Setting up libgtk-3-common (3.24.2-2ubuntu2) ... Setting up libcurl3-gnutls:amd64 (7.61.0-1ubuntu2.2) ... Setting up libcairo-gobject2:amd64 (1.16.0-2) ... Setting up gpg-wks-client (2.2.8-3ubuntu1) ... Setting up libstaden-read13:amd64 (1.14.11-5) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-6) ... Setting up glib-networking:amd64 (2.58.0-2) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libhts2:amd64 (1.9-8) ... Setting up salmon (0.12.0+ds1-1) ... Setting up libhts-dev:amd64 (1.9-8) ... Setting up gnupg (2.2.8-3ubuntu1) ... Setting up libsoup2.4-1:amd64 (2.64.2-2) ... Setting up libsoup-gnome2.4-1:amd64 (2.64.2-2) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-6) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up librest-0.7-0:amd64 (0.8.1-1) ... Setting up librsvg2-2:amd64 (2.44.10-1) ... Setting up librsvg2-common:amd64 (2.44.10-1) ... Setting up libgl1-mesa-glx:amd64 (18.2.6-1ubuntu1) ... Setting up adwaita-icon-theme (3.30.0-0ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up dh-autoreconf (19) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up openjdk-11-jre-headless:amd64 (11.0.1+13-3ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jdk-headless:amd64 (11.0.1+13-3ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up humanity-icon-theme (0.6.15) ... Setting up libgtk-3-0:amd64 (3.24.2-2ubuntu2) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up default-jre-headless (2:1.11-71) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up libwww-perl (6.36-1) ... Setting up openjdk-11-jre:amd64 (11.0.1+13-3ubuntu1) ... Setting up debhelper (12ubuntu1) ... Setting up libconcurrent-java (1.3.4-4) ... Setting up ca-certificates-java (20180516ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:Trustis_FPS_Root_CA.pem Adding debian:AffirmTrust_Networking.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:AffirmTrust_Premium.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Taiwan_GRCA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:ACCVRAIZ1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:SecureTrust_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Certigna.pem Adding debian:ISRG_Root_X1.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:EC-ACC.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Izenpe.com.pem Adding debian:Secure_Global_CA.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem done. Setting up ubuntu-mono (16.10+18.10.20181005-0ubuntu1) ... Setting up default-jre (2:1.11-71) ... Setting up jaligner (1.0+dfsg-6) ... Setting up devscripts (2.18.10) ... Setting up javahelper (0.72.1) ... Setting up openjdk-11-jdk:amd64 (11.0.1+13-3ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk (2:1.11-71) ... Setting up libcolt-free-java (1.2.0+dfsg-5) ... Setting up libjung-free-java (2.0.1+dfsg-1) ... Setting up sbuild-build-depends-trinityrnaseq-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu15) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.38.0+dfsg-7) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc-8_8.2.0-13ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 adwaita-icon-theme_3.30.0-0ubuntu1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 binutils-x86-64-linux-gnu_2.31.1-11ubuntu1 bowtie2_2.3.4.3-1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 ca-certificates-java_20180516ubuntu1 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-13ubuntu1 dash_0.5.10.2-4 dbus_1.12.10-1ubuntu2 dbus-user-session_1.12.10-1ubuntu2 dconf-gsettings-backend_0.30.1-2 dconf-service_0.30.1-2 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 default-jdk_2:1.11-71 default-jdk-headless_2:1.11-71 default-jre_2:1.11-71 default-jre-headless_2:1.11-71 devscripts_2.18.10 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.8-3ubuntu1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.0-5ubuntu3 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-1 fonts-lato_2.0-2 fonts-roboto-slab_1.100263+20170512-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-13ubuntu1 gcc-8-base_8.2.0-13ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 glib-networking_2.58.0-2 glib-networking-common_2.58.0-2 glib-networking-services_2.58.0-2 gnupg_2.2.8-3ubuntu1 gnupg-l10n_2.2.8-3ubuntu1 gnupg-utils_2.2.8-3ubuntu1 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpg-wks-client_2.2.8-3ubuntu1 gpg-wks-server_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgsm_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-3 groff-base_1.22.4-1 gsettings-desktop-schemas_3.28.1-1ubuntu1 gtk-update-icon-cache_3.24.2-2ubuntu2 gzip_1.6-5ubuntu2 hicolor-icon-theme_0.17-2 hostname_3.21 humanity-icon-theme_0.6.15 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 jaligner_1.0+dfsg-6 java-common_0.71 javahelper_0.72.1 jellyfish_2.2.10-2 libacl1_2.2.52-3build1 libapache-pom-java_18-1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-13ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2.1 libasound2_1.1.7-2ubuntu0.1 libasound2-data_1.1.7-2ubuntu0.1 libassuan0_2.5.2-1 libatk-bridge2.0-0_2.30.0-2 libatk1.0-0_2.30.0-2 libatk1.0-data_2.30.0-2 libatomic1_8.2.0-13ubuntu1 libatspi2.0-0_2.30.0-5 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libavahi-client3_0.7-4ubuntu4 libavahi-common-data_0.7-4ubuntu4 libavahi-common3_0.7-4ubuntu4 libb-hooks-op-check-perl_0.22-1build1 libbinutils_2.31.1-11ubuntu1 libblkid1_2.32-0.1ubuntu2 libboost-filesystem1.67.0_1.67.0-11 libboost-iostreams1.67.0_1.67.0-11 libboost-program-options1.67.0_1.67.0-11 libboost-system1.67.0_1.67.0-11 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcairo-gobject2_1.16.0-2 libcairo2_1.16.0-2 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-13ubuntu1 libclass-method-modifiers-perl_2.12-1 libcolord2_1.4.3-3 libcolt-free-java_1.2.0+dfsg-5 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcommons-collections4-java_4.2-1 libcommons-parent-java_43-1 libconcurrent-java_1.3.4-4 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libcups2_2.2.10-3 libcurl3-gnutls_7.61.0-1ubuntu2.2 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1ubuntu2 libdconf1_0.30.1-2 libdebconfclient0_0.244ubuntu1 libdevel-callchecker-perl_0.007-2build2 libdevel-globaldestruction-perl_0.14-1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdivsufsort3_2.0.1-4 libdpkg-perl_1.19.2ubuntu2 libdrm-amdgpu1_2.4.95-1 libdrm-common_2.4.95-1 libdrm-intel1_2.4.95-1 libdrm-nouveau2_2.4.95-1 libdrm-radeon1_2.4.95-1 libdrm2_2.4.95-1 libdynaloader-functions-perl_0.003-1 libedit2_3.1-20181209-1 libelf1_0.175-2 libencode-locale-perl_1.05-1 libepoxy0_1.5.3-0.1 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.0.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-13ubuntu1 libgcc1_1:8.2.0-13ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libgdk-pixbuf2.0-0_2.38.0+dfsg-7 libgdk-pixbuf2.0-common_2.38.0+dfsg-7 libgetopt-java_1.0.14+dfsg-4 libgif7_5.1.4-3 libgl1_1.1.0-1 libgl1-mesa-dri_18.2.6-1ubuntu1 libgl1-mesa-glx_18.2.6-1ubuntu1 libglapi-mesa_18.2.6-1ubuntu1 libglib2.0-0_2.58.1-2 libglvnd0_1.1.0-1 libglx-mesa0_18.2.6-1ubuntu1 libglx0_1.1.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-13ubuntu1 libgpg-error0_1.33-3 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.2-1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libgtk-3-0_3.24.2-2ubuntu2 libgtk-3-common_3.24.2-2ubuntu2 libharfbuzz0b_2.3.0-1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhtml-parser-perl_3.72-3build2 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.07-1 libhts-dev_1.9-8 libhts2_1.9-8 libhttp-cookies-perl_6.04-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libhx509-5-heimdal_7.5.0+dfsg-2.1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libimport-into-perl_1.002005-1 libio-html-perl_1.001-1 libio-pty-perl_1:1.08-1.1build5 libio-socket-ssl-perl_2.060-3 libip4tc0_1.6.1-2ubuntu3 libipc-run-perl_20180523.0-1 libisl19_0.20-2 libitm1_8.2.0-13ubuntu1 libjbig0_2.1-3.1build1 libjellyfish-2.0-2_2.2.10-2 libjemalloc2_5.1.0-1 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjs-jquery_3.2.1-1 libjs-modernizr_2.6.2+ds1-1ubuntu1 libjs-sphinxdoc_1.7.9-1 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libjson-glib-1.0-0_1.4.4-2 libjson-glib-1.0-common_1.4.4-2 libjung-free-java_2.0.1+dfsg-1 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.16.2-1 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libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsoup-gnome2.4-1_2.64.2-2 libsoup2.4-1_2.64.2-2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstaden-read13_1.14.11-5 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 libstrictures-perl_2.000005-1 libsub-exporter-progressive-perl_0.001013-1 libsub-quote-perl_2.005001-1 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtbb2_2018~U6-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtimedate-perl_2.3000-2 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtry-tiny-perl_0.30-1 libtsan0_8.2.0-13ubuntu1 libubsan1_8.2.0-13ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 liburi-perl_1.74-1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libvecmath-java_1.5.2-7 libwayland-client0_1.16.0-1ubuntu2 libwayland-cursor0_1.16.0-1ubuntu2 libwayland-egl1_1.16.0-1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2.1 libwww-perl_6.36-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb1_1.13.1-2 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.15-2 libxdamage1_1:1.1.4-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.4-1 libxkbcommon0_0.8.2-1 libxml2_2.9.4+dfsg1-7ubuntu3 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxtst6_2:1.2.3-1 libxxf86vm1_1:1.1.4-1 libzstd1_1.3.5+dfsg-2 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 netbase_5.5 openjdk-11-jdk_11.0.1+13-3ubuntu1 openjdk-11-jdk-headless_11.0.1+13-3ubuntu1 openjdk-11-jre_11.0.1+13-3ubuntu1 openjdk-11-jre-headless_11.0.1+13-3ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 parafly_0.0.2013.01.21-4 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 patchutils_0.3.4-2 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 perl-openssl-defaults_3build1 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-1ubuntu1 python3-minimal_3.7.1-1ubuntu1 python3.7_3.7.2~rc1-1 python3.7-minimal_3.7.2~rc1-1 readline-common_7.0-5 salmon_0.12.0+ds1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-trinityrnaseq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 sphinx-rtd-theme-common_0.4.2+dfsg-1 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 ubuntu-mono_16.10+18.10.20181005-0ubuntu1 ucf_3.0038+nmu1 util-linux_2.32-0.1ubuntu2 wdiff_1.2.2-2build1 x11-common_1:7.7+19ubuntu8 xkb-data_2.23.1-1ubuntu1.18.10.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jan 1 16:36:27 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./trinityrnaseq_2.6.6+dfsg-3.dsc dpkg-source: info: extracting trinityrnaseq in trinityrnaseq-2.6.6+dfsg dpkg-source: info: unpacking trinityrnaseq_2.6.6+dfsg.orig.tar.xz dpkg-source: info: unpacking trinityrnaseq_2.6.6+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying plugin_clean dpkg-source: info: applying noExitTester dpkg-source: info: applying jellyfish-path dpkg-source: info: applying update-paths dpkg-source: info: applying collections15-to-4 dpkg-source: info: applying 0002-fix_istream_failure_call.patch dpkg-source: info: applying fix_system_paths dpkg-source: info: applying disable-version-check dpkg-source: info: applying adjust-trimmomatic-adapters-path dpkg-source: info: applying build_with_gcc6.patch dpkg-source: info: applying NeedlemanWunschGotohBanded.patch dpkg-source: info: applying disable-libieee Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16221641 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16221641 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16221641 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package trinityrnaseq dpkg-buildpackage: info: source version 2.6.6+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' for target in Inchworm Chrysalis trinity-plugins/*Fastool* trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs; do dh_auto_clean \ --sourcedirectory=${target}; done cd Chrysalis && make -j4 clean make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Chrysalis' Makefile:80: ---------------------------------------------------------- Makefile:81: using g++ version 8 Makefile:82: -------------------------------------------------------- for file in BreakTransByPairs BubbleUpClustering Chrysalis CreateIwormFastaBundle GraphFromFasta GraphFromFasta_MPI IsoformAugment JoinTransByPairs QuantifyGraph ReadsToTranscripts ReadsToTranscripts_MPI ReadsToTranscripts_MPI_chang RunButterfly TranscriptomeFromVaryK ; do rm -f ./$file; done rm -f MakeDepend ./MakeDepend contigs.out my.permanent.log.file \ core a.out Makefile.bak bsubin BasevectorTables.h ./checkLock find obj -name '*.o' -exec rm {} \; || /bin/true find: ‘obj’: No such file or directory rm -rf cxx_repository rm -f lib_*_temp.a make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Chrysalis' dh_auto_clean: invalid or non-existing path to the source directory: trinity-plugins/*Fastool* cd trinity-plugins/slclust && make -j4 clean make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; make clean; done <<< src >>> make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' rm -f slcluster.o graph.o graphnode.o cmd_line_opts.o core a.out *~ \#* slclust Makefile.bak \ ../bin/slclust make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' cd trinity-plugins/scaffold_iworm_contigs && make -j4 clean make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -f scaffold_iworm_contigs make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/scaffold_iworm_contigs' rm --force Chrysalis/Makefile_auto rm --force trinity-plugins/slclust/bin/slclust cd trinity-plugins && /usr/bin/make clean || true make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins' rm -rf ./seqtk-trinity-0.0.2 cd scaffold_iworm_contigs && /usr/bin/make clean make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -f scaffold_iworm_contigs make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/scaffold_iworm_contigs' rm -f ./parafly # rm symlink rm -f ./Trimmomatic # rm symlink cd slclust && /usr/bin/make clean make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; /usr/bin/make clean; done <<< src >>> make[4]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' rm -f slcluster.o graph.o graphnode.o cmd_line_opts.o core a.out *~ \#* slclust Makefile.bak \ ../bin/slclust make[4]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' cd COLLECTL && rm -rf "collectl-4.1.0" && rm -f collectl ** Done cleaning plugins area ** make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins' make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' jh_clean dh_clean debian/rules build dh build --with javahelper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' cd trinity-plugins; tar xvf seqtk-trinity.*.tar.gz seqtk-trinity-0.0.2/ seqtk-trinity-0.0.2/.gitignore seqtk-trinity-0.0.2/LICENSE seqtk-trinity-0.0.2/Makefile seqtk-trinity-0.0.2/README.md seqtk-trinity-0.0.2/khash.h seqtk-trinity-0.0.2/kseq.h seqtk-trinity-0.0.2/seqtk.c seqtk-trinity-0.0.2/testing/ seqtk-trinity-0.0.2/testing/newformat_1.fq seqtk-trinity-0.0.2/testing/newformat_2.fq seqtk-trinity-0.0.2/testing/oldformat_1.fq seqtk-trinity-0.0.2/testing/oldformat_2.fq for target in Inchworm Chrysalis trinity-plugins/*Fastool* trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/seqtk-trinity-*; do dh_auto_configure \ --sourcedirectory=${target} -- \ --prefix=/usr/lib/trinityrnaseq/${target} \ CFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" FCFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong" FFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong" GCJFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" OBJCFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" OBJCXXFLAGS="-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" ; done cd Inchworm && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --prefix=/usr/lib/trinityrnaseq/Inchworm "CFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "FCFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong" "FFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong" "GCJFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong" "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" "OBJCFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "OBJCXXFLAGS=-g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for library containing cos... none required checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_configure: invalid or non-existing path to the source directory: trinity-plugins/*Fastool* make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' for target in Inchworm Chrysalis trinity-plugins/*Fastool* trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/seqtk-trinity-*; do dh_auto_build \ -O--sourcedirectory=${target}; done cd Inchworm && make -j4 make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make all-recursive make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' Making all in src make[4]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Fasta_entry.o Fasta_entry.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IRKE_run.o IRKE_run.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequenceUtil.o sequenceUtil.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o IRKE.o IRKE.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o KmerCounter.o KmerCounter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o string_util.o string_util.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Fasta_reader.o Fasta_reader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stacktrace.o stacktrace.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o argProcessor.o argProcessor.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cigar_tweaker.o cigar_tweaker.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SAM_entry.o SAM_entry.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SAM_reader.o SAM_reader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Cigar.o Cigar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pull_reads_with_kmers.o pull_reads_with_kmers.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaToDeBruijn.o FastaToDeBruijn.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o DeBruijnGraph.o DeBruijnGraph.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastaToKmerCoverageStats.o fastaToKmerCoverageStats.cpp FastaToDeBruijn.cpp: In function ‘void createGraphPerRecord(std::vector >, int, bool, ArgProcessor)’: FastaToDeBruijn.cpp:199:39: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] if (seq_region.size() < kmer_length) { continue; } // can be encountered in jaccard-clip mode (rarely) ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ fastaToKmerCoverageStats.cpp: In function ‘void populate_kmer_counter_from_reads(KmerCounter&, std::__cxx11::string&)’: fastaToKmerCoverageStats.cpp:226:18: warning: unused variable ‘kmer_length’ [-Wunused-variable] unsigned int kmer_length = kcounter.get_kmer_length(); ^~~~~~~~~~~ fastaToKmerCoverageStats.cpp:245:9: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp parallel private (myTid) ^~~ g++ -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o inchworm Fasta_entry.o IRKE_run.o sequenceUtil.o IRKE.o KmerCounter.o string_util.o Fasta_reader.o stacktrace.o argProcessor.o g++ -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o cigar_tweaker cigar_tweaker.o SAM_entry.o sequenceUtil.o SAM_reader.o Cigar.o string_util.o stacktrace.o Fasta_reader.o Fasta_entry.o g++ -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o pull_reads_with_kmers pull_reads_with_kmers.o Fasta_reader.o Fasta_entry.o sequenceUtil.o KmerCounter.o string_util.o stacktrace.o argProcessor.o g++ -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastaToKmerCoverageStats fastaToKmerCoverageStats.o argProcessor.o Fasta_reader.o Fasta_entry.o sequenceUtil.o string_util.o stacktrace.o KmerCounter.o g++ -std=c++0x -pedantic -fopenmp -Wall -Wextra -Wno-deprecated -m64 -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o FastaToDeBruijn FastaToDeBruijn.o argProcessor.o Fasta_reader.o Fasta_entry.o sequenceUtil.o string_util.o stacktrace.o DeBruijnGraph.o make[4]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm/src' make[4]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[4]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' cd Chrysalis && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Chrysalis' Makefile:80: ---------------------------------------------------------- Makefile:81: using g++ version 8 Makefile:82: -------------------------------------------------------- ./MakeDepend.cc: In member function ‘bool makefile_builder::dependency::operator<(const makefile_builder::dependency&) const’: ./MakeDepend.cc:93:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] dependent_ == other.dependent_ && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ provider_ < other.provider_ ); } ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./MakeDepend.cc: In member function ‘bool makefile_builder::subdir_and_target::operator<(const makefile_builder::subdir_and_target&) const’: ./MakeDepend.cc:130:41: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] subdir_ == other.subdir_ && ~~~~~~~~~~~~~~~~~~~~~~~~~^~ target_ < other.target_ ); } ~~~~~~~~~~~~~~~~~~~~~~~ ./MakeDepend.cc: In function ‘int main(int, char**)’: ./MakeDepend.cc:223:20: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] char * options = "Ad:g:u:fh"; ^~~~~~~~~~~ ./MakeDepend.cc: In member function ‘void makefile_builder::DumpDependencies(const string&)’: ./MakeDepend.cc:491:46: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if ( ! this->FileIsSource( dependent ) && ! this->FileIsHeader( dependent ) || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./MakeDepend.cc:493:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] this->FileIsHeader( dependent ) && this->FileIsSource( provider ) ) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./MakeDepend.cc: In member function ‘bool makefile_builder::FileIsHeader(const string&) const’: ./MakeDepend.cc:1339:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] return ( filename.size() > 2 && ~~~~~~~~~~~~~~~~~~~~^~ ( CompareSubstring( filename, filename.size() - 2, 2, ".h" ) == 0 ) || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./aligns/KmerAlignCore.cc -o obj/aligns/KmerAlignCore.o g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/AACodons.cc -o obj/analysis/AACodons.o g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/BreakTransByPairs.cc -o obj/analysis/BreakTransByPairs.o g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/DNAVector.cc -o obj/analysis/DNAVector.o ./analysis/BreakTransByPairs.cc: In function ‘int main(int, char**)’: ./analysis/BreakTransByPairs.cc:105:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] for (i=0; i > DeBruijnGraph::get_candidate_weldmers(kmer_int_type_t, int)’: ./analysis/DeBruijnGraph.cc:473:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int i = 0; i < left_extensions.size(); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~ ./analysis/DeBruijnGraph.cc:476:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int j = 0; j < right_extensions.size(); j++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~ ./analysis/DeBruijnGraph.cc: In member function ‘void DeBruijnGraph::recursively_construct_kmer_extensions(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)’: ./analysis/DeBruijnGraph.cc:513:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int i = 0; i < adjacent_kmers.size(); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~ ./analysis/DeBruijnGraph.cc:527:41: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] if (kmer_extension_chars.size() == flank_extension_length) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/sequenceUtil.cc -o obj/analysis/sequenceUtil.o ./analysis/sequenceUtil.cc: In function ‘bool contains_non_gatc(std::__cxx11::string)’: ./analysis/sequenceUtil.cc:33:20: warning: array subscript has type ‘char’ [-Wchar-subscripts] if (_base_to_int[c] > 3) ^ ./analysis/sequenceUtil.cc: In function ‘kmer_int_type_t kmer_to_intval(std::__cxx11::string)’: ./analysis/sequenceUtil.cc:264:26: warning: array subscript has type ‘char’ [-Wchar-subscripts] int val = _base_to_int[c]; ^ g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/stacktrace.cc -o obj/analysis/stacktrace.o g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/Chrysalis.cc -o obj/analysis/Chrysalis.o g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/TranscriptomeGraph.cc -o obj/analysis/TranscriptomeGraph.o ./analysis/TranscriptomeGraph.cc: In function ‘int TranscriptomeGraph(vecDNAVector&, FILE*, int, bool)’: ./analysis/TranscriptomeGraph.cc:668:20: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] for (i=0; i<=d.isize()-k; i++) { ~^~~~~~~~~~~~~ ./analysis/Chrysalis.cc: In function ‘int main(int, char**)’: ./analysis/Chrysalis.cc:384:11: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~ g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/CreateIwormFastaBundle.cc -o obj/analysis/CreateIwormFastaBundle.o g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='""""' -DMAKE_OS_RELEASE='"4.4.0-141-generic"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 -fno-strict-aliasing -iquote . -ISpines -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -c ./analysis/GraphFromFasta.cc -o obj/analysis/GraphFromFasta.o ./analysis/GraphFromFasta.cc: In function ‘bool SimpleHalves(const DNAVector&)’: ./analysis/GraphFromFasta.cc:255:15: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] ( (! DISABLE_REPEAT_CHECK) ~~~~~~~~~~~~~~~~~~~~~~~~ && ^~ is_simple_repeat(left) || is_simple_repeat(right) ) ~~~~~~~~~~~~~~~~~~~~~~ ./analysis/GraphFromFasta.cc: In function ‘void report_iworm_graph(std::map&, std::map&)’: ./analysis/GraphFromFasta.cc:631:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int j = 0; j < adjacent_nodes.size(); j++) { ~~^~~~~~~~~~~~~~~~~~~~~~~ ./analysis/GraphFromFasta.cc: In function ‘int main(int, char**)’: ./analysis/GraphFromFasta.cc:1164:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] for (i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int j = 0; j < m_index.size(); j++) { ~~^~~~~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc: In function ‘svec bubble_up_cluster_growth(std::map&, std::map&)’: ./GraphFromFasta_MPI.cc:706:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int i = 0; i < pool_vec.size(); i++) { ~~^~~~~~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc:727:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int i = 0; i < pool_vec.size(); i++) { ~~^~~~~~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc:834:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (int i = 0; i < pool_vec.size(); i++) { ~~^~~~~~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc: In function ‘void add_unclustered_iworm_contigs(svec&, vecDNAVector&)’: ./GraphFromFasta_MPI.cc:1144:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] for (size_t i = 0; i < p.size(); i++) { ~~^~~~~~~~~~ ./GraphFromFasta_MPI.cc: In function ‘int main(int, char**)’: ./GraphFromFasta_MPI.cc:1453:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] if (iworm_counter % 1000 == 0 || iworm_counter == dna.size()-1) { ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc:1458:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] for (j=0; j<=d.isize()-k; j++) { ~^~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc:1479:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] if (c == i) ~~^~~~ ./GraphFromFasta_MPI.cc:1503:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] if (c == i) ~~^~~~ ./GraphFromFasta_MPI.cc:2235:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] for (j=0; j<=d.isize()-k; j++) { ~^~~~~~~~~~~~~ ./GraphFromFasta_MPI.cc:2264:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] if (c == i) { ~~^~~~ ./GraphFromFasta_MPI.cc:2359:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] if (c == i) { ~~^~~~ ./GraphFromFasta_MPI.cc:2475:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] for (i=0; i>/trinityrnaseq-2.6.6+dfsg/Chrysalis' dh_auto_build: invalid or non-existing path to the source directory: trinity-plugins/*Fastool* cd trinity-plugins/slclust && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< src >>> make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' g++ -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o slcluster.o slcluster.cpp g++ -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o graph.o graph.cpp g++ -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o graphnode.o graphnode.cpp g++ -g -O2 -fdebug-prefix-map=/<>/trinityrnaseq-2.6.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cmd_line_opts.o cmd_line_opts.cpp g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now slcluster.o graph.o graphnode.o cmd_line_opts.o -o slclust chmod 755 slclust make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' cd trinity-plugins/scaffold_iworm_contigs && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/scaffold_iworm_contigs' g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -I../htslib -L../htslib ScaffoldIwormContigs.cpp error_checker.cpp -lhts -o scaffold_iworm_contigs make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/scaffold_iworm_contigs' cd trinity-plugins/seqtk-trinity-0.0.2 && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/seqtk-trinity-0.0.2' gcc -g -Wall -O2 -Wno-unused-function seqtk.c -o seqtk-trinity -lz -lm seqtk.c: In function ‘stk_comp’: seqtk.c:444:16: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable] int la, lb, lc, na, nb, nc, cnt[11]; ^~ make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/seqtk-trinity-0.0.2' make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' jh_build find Butterfly/src/src -name *.java -and -type f -print0 | xargs -s 512000 -0 /usr/lib/jvm/default-java/bin/javac -g -cp /usr/share/java/commons-collections4.jar:/usr/share/java/gnu-getopt.jar:/usr/share/java/jung-algorithms.jar:/usr/share/java/jung-api.jar:/usr/share/java/jung-graph-impl.jar:/usr/share/java/jaligner.jar:debian/_jh_build.Butterfly -d debian/_jh_build.Butterfly -source 1.7 -target 1.7 -encoding ISO8859-1 warning: [options] bootstrap class path not set in conjunction with -source 7 Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning find Butterfly/src/src -name *.java -and -type f -print0 | xargs -s 512000 -0 /usr/lib/jvm/default-java/bin/javadoc -locale en_US -classpath /usr/share/java/commons-collections4.jar:/usr/share/java/gnu-getopt.jar:/usr/share/java/jung-algorithms.jar:/usr/share/java/jung-api.jar:/usr/share/java/jung-graph-impl.jar:/usr/share/java/jaligner.jar:debian/_jh_build.Butterfly -d debian/_jh_build.javadoc/api -quiet -encoding ISO8859-1 -notimestamp -source 1.7 Creating destination directory: "debian/_jh_build.javadoc/api/" Butterfly/src/src/My_DFS.java:30: warning - @param argument "roots" is not a parameter name. Butterfly/src/src/PairPath.java:124: warning - @param argument "isCircular" is not a parameter name. Butterfly/src/src/Read.java:18: warning - @param argument "toV" is not a parameter name. Butterfly/src/src/SeqVertex.java:80: warning - @param argument "nextID" is not a parameter name. Butterfly/src/src/SeqVertex.java:81: warning - @param argument "l" is not a parameter name. Butterfly/src/src/SeqVertex.java:155: warning - @param argument "_origButterflyID" is not a parameter name. Butterfly/src/src/SeqVertex.java:766: warning - @param argument "name" is not a parameter name. Butterfly/src/src/SeqVertex.java:767: warning - @param argument "weight" is not a parameter name. Butterfly/src/src/SeqVertex.java:768: warning - @param argument "name2" is not a parameter name. Butterfly/src/src/SeqVertex.java:769: warning - @param argument "weight2" is not a parameter name. Butterfly/src/src/TransAssembly_allProbPaths.java:15031: warning - @param argument "candidateNodes" is not a parameter name. Butterfly/src/src/TransAssembly_allProbPaths.java:15032: warning - @param argument "l" is not a parameter name. 12 warnings /usr/lib/jvm/default-java/bin/jar cfm /<>/trinityrnaseq-2.6.6+dfsg/Butterfly.jar ../_jh_manifest.Butterfly AlignmentStats.class BFLY_GLOBALS.class BipartiteMatching.class DFS.class GraphPath.class IsoformExpressionLearning.class ListComparator.class LocInGraph.class My_DFS$1.class My_DFS$2.class My_DFS.class NWalign.class NumPathNodeLoopsEdgeComparator.class PairPath.class PairPathWOrig.class PasaVertex$1.class PasaVertex.class Path.class PathEndSeqVertexFinishTimeComparator.class PathExpressionComparator.class PathOverlap.class PathReadSupportComparator.class PathWithOrig.class Path_n_MM_count$Vertex_path_position.class Path_n_MM_count.class Read.class ScoredPath.class SeqComparator.class SeqVertex.class SeqVertexDepthComparator.class SeqVertexFinishTimeComparator.class SeqVertexNodeDepthComparator.class SimpleEdge.class SimpleEdgeComparator.class SimplePathNodeEdge.class TopologicalSort.class TransAssembly_allProbPaths$1.class TransAssembly_allProbPaths$10.class TransAssembly_allProbPaths$11.class TransAssembly_allProbPaths$12.class TransAssembly_allProbPaths$13.class TransAssembly_allProbPaths$14.class TransAssembly_allProbPaths$15.class TransAssembly_allProbPaths$16.class TransAssembly_allProbPaths$17.class TransAssembly_allProbPaths$18.class TransAssembly_allProbPaths$19.class TransAssembly_allProbPaths$2.class TransAssembly_allProbPaths$20.class TransAssembly_allProbPaths$3.class TransAssembly_allProbPaths$4.class TransAssembly_allProbPaths$5.class TransAssembly_allProbPaths$6.class TransAssembly_allProbPaths$7.class TransAssembly_allProbPaths$8.class TransAssembly_allProbPaths$9.class TransAssembly_allProbPaths$FinalPaths.class TransAssembly_allProbPaths.class UniquePathContentComparator.class Visitor.class ZipperAlignment.class edu numLoopsEdgeComparator.class trinityrnasq_jaligner debian/rules override_dh_auto_test make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' java -cp Butterfly.jar TransAssembly_allProbPaths -N 10000 -L 300 \ -F 300 -C Butterfly/src/sample_data/c1.graph --stderr -V 20 Started using Path alignment for path comparisons combine paths if (identity=(numberOfMatches/shorterLen) > 98.0% or if we have <= 2 mismatches) and if we have internal gap lengths <= 10 path reinforcement distance computed based on 25% of max pair distance: 300 = 75 bases SECTION ================ Parsing de Bruijn graph ====================== preProcessGraphFile: Butterfly/src/sample_data/c1.graph.out SECTION ================== buildNewGraph ======================== buildNewGraphFirstLetter: Butterfly/src/sample_data/c1.graph.out KMER_SIZE=24 [17] [34] [51] [68] [85] [102] [119] [136] [153] [170] [187] [204] [221] [238] [255] [272] [289] [306] [323] [340] [357] [374] [391] [408] [425] [442] [459] [476] [493] Graph is built NODE_DESCR: GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) Preds: [] Succ: [C:W-1(V381_D-1) ] NODE_DESCR: C:W-1(V381_D-1) Preds: [GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) ] Succ: [A:W-1(V382_D-1) ] NODE_DESCR: A:W-1(V382_D-1) Preds: [C:W-1(V381_D-1) ] Succ: [C:W-1(V383_D-1) ] NODE_DESCR: C:W-1(V383_D-1) Preds: [A:W-1(V382_D-1) ] Succ: [A:W-1(V384_D-1) ] NODE_DESCR: A:W-1(V384_D-1) Preds: [C:W-1(V383_D-1) ] Succ: [T:W-1(V385_D-1) ] NODE_DESCR: T:W-1(V385_D-1) Preds: [A:W-1(V384_D-1) ] Succ: [T:W-1(V386_D-1) ] NODE_DESCR: T:W-1(V386_D-1) Preds: [T:W-1(V385_D-1) ] Succ: [T:W-1(V387_D-1) ] NODE_DESCR: T:W-1(V387_D-1) Preds: [T:W-1(V386_D-1) ] Succ: [C:W-1(V388_D-1) ] NODE_DESCR: C:W-1(V388_D-1) Preds: [T:W-1(V387_D-1) ] Succ: [T:W-1(V389_D-1) ] NODE_DESCR: T:W-1(V389_D-1) Preds: [C:W-1(V388_D-1) ] Succ: [A:W-1(V390_D-1) ] NODE_DESCR: A:W-1(V390_D-1) Preds: [T:W-1(V389_D-1) ] Succ: [C:W-1(V391_D-1) ] NODE_DESCR: C:W-1(V391_D-1) Preds: [A:W-1(V390_D-1) ] Succ: [T:W-1(V392_D-1) ] NODE_DESCR: T:W-1(V392_D-1) Preds: [C:W-1(V391_D-1) ] Succ: [G:W-1(V393_D-1) ] NODE_DESCR: G:W-1(V393_D-1) Preds: [T:W-1(V392_D-1) ] Succ: [G:W-1(V394_D-1) ] NODE_DESCR: G:W-1(V394_D-1) Preds: [G:W-1(V393_D-1) ] Succ: [C:W-1(V395_D-1) ] NODE_DESCR: C:W-1(V395_D-1) Preds: [G:W-1(V394_D-1) ] Succ: [T:W-1(V396_D-1) ] NODE_DESCR: T:W-1(V396_D-1) Preds: [C:W-1(V395_D-1) ] Succ: [A:W-1(V397_D-1) ] NODE_DESCR: A:W-1(V397_D-1) Preds: [T:W-1(V396_D-1) ] Succ: [C:W-1(V398_D-1) ] NODE_DESCR: C:W-1(V398_D-1) Preds: [A:W-1(V397_D-1) ] Succ: [A:W-1(V399_D-1) ] NODE_DESCR: A:W-1(V399_D-1) Preds: [C:W-1(V398_D-1) ] Succ: [A:W-1(V400_D-1) ] NODE_DESCR: A:W-1(V400_D-1) Preds: [A:W-1(V399_D-1) ] Succ: [A:W-1(V401_D-1) ] NODE_DESCR: A:W-1(V401_D-1) Preds: [A:W-1(V400_D-1) ] Succ: [C:W-1(V402_D-1) ] NODE_DESCR: C:W-1(V402_D-1) Preds: [A:W-1(V401_D-1) ] Succ: [A:W-1(V403_D-1) ] NODE_DESCR: A:W-1(V403_D-1) Preds: [C:W-1(V402_D-1) ] Succ: [G:W-1(V404_D-1) ] NODE_DESCR: G:W-1(V404_D-1) Preds: [A:W-1(V403_D-1) ] Succ: [A:W-1(V405_D-1) ] NODE_DESCR: A:W-1(V405_D-1) Preds: [G:W-1(V404_D-1) ] Succ: [C:W-1(V406_D-1) ] NODE_DESCR: C:W-1(V406_D-1) Preds: [A:W-1(V405_D-1) ] Succ: [T:W-1(V407_D-1) ] NODE_DESCR: T:W-1(V407_D-1) Preds: [C:W-1(V406_D-1) ] Succ: [T:W-1(V408_D-1) ] NODE_DESCR: T:W-1(V408_D-1) Preds: [T:W-1(V407_D-1) ] Succ: [C:W-1(V409_D-1) ] NODE_DESCR: C:W-1(V409_D-1) Preds: [T:W-1(V408_D-1) ] Succ: [C:W-1(V410_D-1) ] NODE_DESCR: C:W-1(V410_D-1) Preds: [C:W-1(V409_D-1) ] Succ: [T:W-1(V411_D-1) ] NODE_DESCR: T:W-1(V411_D-1) Preds: [C:W-1(V410_D-1) ] Succ: [C:W-1(V412_D-1) ] NODE_DESCR: C:W-1(V412_D-1) Preds: [T:W-1(V411_D-1) ] Succ: [A:W-1(V413_D-1) ] NODE_DESCR: A:W-1(V413_D-1) Preds: [C:W-1(V412_D-1) ] Succ: [A:W-1(V414_D-1) ] NODE_DESCR: A:W-1(V414_D-1) Preds: [A:W-1(V413_D-1) ] Succ: [G:W-1(V415_D-1) ] NODE_DESCR: G:W-1(V415_D-1) Preds: [A:W-1(V414_D-1) ] Succ: [C:W-1(V416_D-1) G:W-1(V885_D-1) ] NODE_DESCR: C:W-1(V416_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V417_D-1) ] NODE_DESCR: C:W-1(V417_D-1) Preds: [C:W-1(V416_D-1) ] Succ: [T:W-1(V418_D-1) ] NODE_DESCR: T:W-1(V418_D-1) Preds: [C:W-1(V417_D-1) ] Succ: [C:W-1(V419_D-1) ] NODE_DESCR: C:W-1(V419_D-1) Preds: [T:W-1(V418_D-1) ] Succ: [A:W-1(V420_D-1) ] NODE_DESCR: A:W-1(V420_D-1) Preds: [C:W-1(V419_D-1) ] Succ: [T:W-1(V421_D-1) ] NODE_DESCR: T:W-1(V421_D-1) Preds: [A:W-1(V420_D-1) ] Succ: [C:W-1(V422_D-1) ] NODE_DESCR: C:W-1(V422_D-1) Preds: [T:W-1(V421_D-1) ] Succ: [A:W-1(V423_D-1) ] NODE_DESCR: A:W-1(V423_D-1) Preds: [C:W-1(V422_D-1) ] Succ: [G:W-1(V424_D-1) ] NODE_DESCR: G:W-1(V424_D-1) Preds: [A:W-1(V423_D-1) ] Succ: [C:W-1(V425_D-1) ] NODE_DESCR: C:W-1(V425_D-1) Preds: [G:W-1(V424_D-1) ] Succ: [A:W-1(V426_D-1) ] NODE_DESCR: A:W-1(V426_D-1) Preds: [C:W-1(V425_D-1) ] Succ: [A:W-1(V427_D-1) ] NODE_DESCR: A:W-1(V427_D-1) Preds: [A:W-1(V426_D-1) ] Succ: [G:W-1(V428_D-1) ] NODE_DESCR: G:W-1(V428_D-1) Preds: [A:W-1(V427_D-1) ] Succ: [A:W-1(V429_D-1) ] NODE_DESCR: A:W-1(V429_D-1) Preds: [G:W-1(V428_D-1) ] Succ: [A:W-1(V430_D-1) ] NODE_DESCR: A:W-1(V430_D-1) Preds: [A:W-1(V429_D-1) ] Succ: [G:W-1(V431_D-1) ] NODE_DESCR: G:W-1(V431_D-1) Preds: [A:W-1(V430_D-1) ] Succ: [A:W-1(V432_D-1) ] NODE_DESCR: A:W-1(V432_D-1) Preds: [G:W-1(V431_D-1) ] Succ: [A:W-1(V433_D-1) ] NODE_DESCR: A:W-1(V433_D-1) Preds: [A:W-1(V432_D-1) ] Succ: [A:W-1(V434_D-1) ] NODE_DESCR: A:W-1(V434_D-1) Preds: [A:W-1(V433_D-1) ] Succ: [T:W-1(V435_D-1) ] NODE_DESCR: T:W-1(V435_D-1) Preds: [A:W-1(V434_D-1) ] Succ: [C:W-1(V436_D-1) ] NODE_DESCR: C:W-1(V436_D-1) Preds: [T:W-1(V435_D-1) ] Succ: [T:W-1(V437_D-1) ] NODE_DESCR: T:W-1(V437_D-1) Preds: [C:W-1(V436_D-1) ] Succ: [T:W-1(V438_D-1) ] NODE_DESCR: T:W-1(V438_D-1) Preds: [T:W-1(V437_D-1) ] Succ: [T:W-1(V439_D-1) ] NODE_DESCR: T:W-1(V439_D-1) Preds: [T:W-1(V438_D-1) ] Succ: [C:W-1(V440_D-1) ] NODE_DESCR: C:W-1(V440_D-1) Preds: [T:W-1(V439_D-1) T:W-1(V908_D-1) ] Succ: [T:W-1(V441_D-1) ] NODE_DESCR: T:W-1(V441_D-1) Preds: [C:W-1(V440_D-1) ] Succ: [T:W-1(V442_D-1) ] NODE_DESCR: T:W-1(V442_D-1) Preds: [T:W-1(V441_D-1) ] Succ: [T:W-1(V443_D-1) ] NODE_DESCR: T:W-1(V443_D-1) Preds: [T:W-1(V442_D-1) ] Succ: [C:W-1(V444_D-1) ] NODE_DESCR: C:W-1(V444_D-1) Preds: [T:W-1(V443_D-1) ] Succ: [C:W-1(V445_D-1) ] NODE_DESCR: C:W-1(V445_D-1) Preds: [C:W-1(V444_D-1) ] Succ: [A:W-1(V446_D-1) ] NODE_DESCR: A:W-1(V446_D-1) Preds: [C:W-1(V445_D-1) ] Succ: [A:W-1(V447_D-1) ] NODE_DESCR: A:W-1(V447_D-1) Preds: [A:W-1(V446_D-1) ] Succ: [G:W-1(V448_D-1) ] NODE_DESCR: G:W-1(V448_D-1) Preds: [A:W-1(V447_D-1) ] Succ: [T:W-1(V449_D-1) ] NODE_DESCR: T:W-1(V449_D-1) Preds: [G:W-1(V448_D-1) ] Succ: [A:W-1(V450_D-1) ] NODE_DESCR: A:W-1(V450_D-1) Preds: [T:W-1(V449_D-1) ] Succ: [G:W-1(V451_D-1) ] NODE_DESCR: G:W-1(V451_D-1) Preds: [A:W-1(V450_D-1) A:W-1(V980_D-1) ] Succ: [T:W-1(V452_D-1) ] NODE_DESCR: T:W-1(V452_D-1) Preds: [G:W-1(V451_D-1) ] Succ: [G:W-1(V453_D-1) ] NODE_DESCR: G:W-1(V453_D-1) Preds: [T:W-1(V452_D-1) ] Succ: [T:W-1(V454_D-1) ] NODE_DESCR: T:W-1(V454_D-1) Preds: [G:W-1(V453_D-1) ] Succ: [C:W-1(V455_D-1) ] NODE_DESCR: C:W-1(V455_D-1) Preds: [T:W-1(V454_D-1) ] Succ: [T:W-1(V456_D-1) ] NODE_DESCR: T:W-1(V456_D-1) Preds: [C:W-1(V455_D-1) ] Succ: [T:W-1(V457_D-1) ] NODE_DESCR: T:W-1(V457_D-1) Preds: [T:W-1(V456_D-1) ] Succ: [A:W-1(V458_D-1) ] NODE_DESCR: A:W-1(V458_D-1) Preds: [T:W-1(V457_D-1) ] Succ: [A:W-1(V459_D-1) ] NODE_DESCR: A:W-1(V459_D-1) Preds: [A:W-1(V458_D-1) ] Succ: [C:W-1(V460_D-1) ] NODE_DESCR: C:W-1(V460_D-1) Preds: [A:W-1(V459_D-1) ] Succ: [T:W-1(V461_D-1) ] NODE_DESCR: T:W-1(V461_D-1) Preds: [C:W-1(V460_D-1) ] Succ: [C:W-1(V462_D-1) ] NODE_DESCR: C:W-1(V462_D-1) Preds: [T:W-1(V461_D-1) ] Succ: [A:W-1(V463_D-1) ] NODE_DESCR: A:W-1(V463_D-1) Preds: [C:W-1(V462_D-1) ] Succ: [G:W-1(V464_D-1) ] NODE_DESCR: G:W-1(V464_D-1) Preds: [A:W-1(V463_D-1) ] Succ: [G:W-1(V465_D-1) ] NODE_DESCR: G:W-1(V465_D-1) Preds: [G:W-1(V464_D-1) ] Succ: [A:W-1(V466_D-1) ] NODE_DESCR: A:W-1(V466_D-1) Preds: [G:W-1(V465_D-1) ] Succ: [G:W-1(V467_D-1) ] NODE_DESCR: G:W-1(V467_D-1) Preds: [A:W-1(V466_D-1) ] Succ: [A:W-1(V468_D-1) ] NODE_DESCR: A:W-1(V468_D-1) Preds: [G:W-1(V467_D-1) ] Succ: [T:W-1(V469_D-1) ] NODE_DESCR: T:W-1(V469_D-1) Preds: [A:W-1(V468_D-1) ] Succ: [C:W-1(V470_D-1) ] NODE_DESCR: C:W-1(V470_D-1) Preds: [T:W-1(V469_D-1) ] Succ: [A:W-1(V471_D-1) ] NODE_DESCR: A:W-1(V471_D-1) Preds: [C:W-1(V470_D-1) ] Succ: [T:W-1(V472_D-1) ] NODE_DESCR: T:W-1(V472_D-1) Preds: [A:W-1(V471_D-1) ] Succ: [G:W-1(V473_D-1) ] NODE_DESCR: G:W-1(V473_D-1) Preds: [T:W-1(V472_D-1) ] Succ: [G:W-1(V474_D-1) ] NODE_DESCR: G:W-1(V474_D-1) Preds: [G:W-1(V473_D-1) ] Succ: [T:W-1(V475_D-1) ] NODE_DESCR: T:W-1(V475_D-1) Preds: [G:W-1(V474_D-1) ] Succ: [A:W-1(V476_D-1) ] NODE_DESCR: A:W-1(V476_D-1) Preds: [T:W-1(V475_D-1) ] Succ: [G:W-1(V477_D-1) ] NODE_DESCR: G:W-1(V477_D-1) Preds: [A:W-1(V476_D-1) ] Succ: [G:W-1(V478_D-1) ] NODE_DESCR: G:W-1(V478_D-1) Preds: [G:W-1(V477_D-1) ] Succ: [G:W-1(V479_D-1) ] NODE_DESCR: G:W-1(V479_D-1) Preds: [G:W-1(V478_D-1) ] Succ: [A:W-1(V480_D-1) ] NODE_DESCR: A:W-1(V480_D-1) Preds: [G:W-1(V479_D-1) ] Succ: [A:W-1(V481_D-1) ] NODE_DESCR: A:W-1(V481_D-1) Preds: [A:W-1(V480_D-1) ] Succ: [G:W-1(V482_D-1) ] NODE_DESCR: G:W-1(V482_D-1) Preds: [A:W-1(V481_D-1) ] Succ: [G:W-1(V483_D-1) ] NODE_DESCR: G:W-1(V483_D-1) Preds: [G:W-1(V482_D-1) ] Succ: [G:W-1(V484_D-1) ] NODE_DESCR: G:W-1(V484_D-1) Preds: [G:W-1(V483_D-1) ] Succ: [G:W-1(V485_D-1) ] NODE_DESCR: G:W-1(V485_D-1) Preds: [G:W-1(V484_D-1) ] Succ: [T:W-1(V486_D-1) ] NODE_DESCR: T:W-1(V486_D-1) Preds: [G:W-1(V485_D-1) ] Succ: [C:W-1(V487_D-1) ] NODE_DESCR: C:W-1(V487_D-1) Preds: [T:W-1(V486_D-1) ] Succ: [A:W-1(V488_D-1) ] NODE_DESCR: A:W-1(V488_D-1) Preds: [C:W-1(V487_D-1) ] Succ: [G:W-1(V489_D-1) ] NODE_DESCR: G:W-1(V489_D-1) Preds: [A:W-1(V488_D-1) ] Succ: [G:W-1(V490_D-1) ] NODE_DESCR: G:W-1(V490_D-1) Preds: [G:W-1(V489_D-1) ] Succ: [C:W-1(V491_D-1) ] NODE_DESCR: C:W-1(V491_D-1) Preds: [G:W-1(V490_D-1) ] Succ: [C:W-1(V492_D-1) ] NODE_DESCR: C:W-1(V492_D-1) Preds: [C:W-1(V491_D-1) ] Succ: [A:W-1(V493_D-1) ] NODE_DESCR: A:W-1(V493_D-1) Preds: [C:W-1(V492_D-1) ] Succ: [C:W-1(V494_D-1) ] NODE_DESCR: C:W-1(V494_D-1) Preds: [A:W-1(V493_D-1) ] Succ: [T:W-1(V495_D-1) ] NODE_DESCR: T:W-1(V495_D-1) Preds: [C:W-1(V494_D-1) ] Succ: [T:W-1(V496_D-1) ] NODE_DESCR: T:W-1(V496_D-1) Preds: [T:W-1(V495_D-1) ] Succ: [C:W-1(V497_D-1) ] NODE_DESCR: C:W-1(V497_D-1) Preds: [T:W-1(V496_D-1) ] Succ: [A:W-1(V498_D-1) ] NODE_DESCR: A:W-1(V498_D-1) Preds: [C:W-1(V497_D-1) ] Succ: [C:W-1(V499_D-1) ] NODE_DESCR: C:W-1(V499_D-1) Preds: [A:W-1(V498_D-1) ] Succ: [A:W-1(V500_D-1) ] NODE_DESCR: A:W-1(V500_D-1) Preds: [C:W-1(V499_D-1) ] Succ: [A:W-1(V501_D-1) ] NODE_DESCR: A:W-1(V501_D-1) Preds: [A:W-1(V500_D-1) ] Succ: [G:W-1(V502_D-1) ] NODE_DESCR: G:W-1(V502_D-1) Preds: [A:W-1(V501_D-1) ] Succ: [G:W-1(V503_D-1) ] NODE_DESCR: G:W-1(V503_D-1) Preds: [G:W-1(V502_D-1) ] Succ: [A:W-1(V504_D-1) ] NODE_DESCR: A:W-1(V504_D-1) Preds: [G:W-1(V503_D-1) ] Succ: [G:W-1(V505_D-1) ] NODE_DESCR: G:W-1(V505_D-1) Preds: [A:W-1(V504_D-1) ] Succ: [C:W-1(V506_D-1) ] NODE_DESCR: C:W-1(V506_D-1) Preds: [G:W-1(V505_D-1) ] Succ: [A:W-1(V507_D-1) ] NODE_DESCR: A:W-1(V507_D-1) Preds: [C:W-1(V506_D-1) ] Succ: [G:W-1(V508_D-1) ] NODE_DESCR: G:W-1(V508_D-1) Preds: [A:W-1(V507_D-1) ] Succ: [A:W-1(V509_D-1) ] NODE_DESCR: A:W-1(V509_D-1) Preds: [G:W-1(V508_D-1) ] Succ: [G:W-1(V510_D-1) ] NODE_DESCR: G:W-1(V510_D-1) Preds: [A:W-1(V509_D-1) ] Succ: [T:W-1(V511_D-1) ] NODE_DESCR: T:W-1(V511_D-1) Preds: [G:W-1(V510_D-1) ] Succ: [T:W-1(V512_D-1) ] NODE_DESCR: T:W-1(V512_D-1) Preds: [T:W-1(V511_D-1) ] Succ: [A:W-1(V513_D-1) ] NODE_DESCR: A:W-1(V513_D-1) Preds: [T:W-1(V512_D-1) ] Succ: [G:W-1(V514_D-1) ] NODE_DESCR: G:W-1(V514_D-1) Preds: [A:W-1(V513_D-1) ] Succ: [G:W-1(V515_D-1) ] NODE_DESCR: G:W-1(V515_D-1) Preds: [G:W-1(V514_D-1) ] Succ: [A:W-1(V516_D-1) ] NODE_DESCR: A:W-1(V516_D-1) Preds: [G:W-1(V515_D-1) ] Succ: [A:W-1(V517_D-1) ] NODE_DESCR: A:W-1(V517_D-1) Preds: [A:W-1(V516_D-1) ] Succ: [G:W-1(V518_D-1) ] NODE_DESCR: G:W-1(V518_D-1) Preds: [A:W-1(V517_D-1) ] Succ: [C:W-1(V519_D-1) ] NODE_DESCR: C:W-1(V519_D-1) Preds: [G:W-1(V518_D-1) ] Succ: [T:W-1(V520_D-1) ] NODE_DESCR: T:W-1(V520_D-1) Preds: [C:W-1(V519_D-1) ] Succ: [C:W-1(V521_D-1) ] NODE_DESCR: C:W-1(V521_D-1) Preds: [T:W-1(V520_D-1) ] Succ: [C:W-1(V522_D-1) ] NODE_DESCR: C:W-1(V522_D-1) Preds: [C:W-1(V521_D-1) ] Succ: [C:W-1(V523_D-1) ] NODE_DESCR: C:W-1(V523_D-1) Preds: [C:W-1(V522_D-1) ] Succ: [T:W-1(V524_D-1) ] NODE_DESCR: T:W-1(V524_D-1) Preds: [C:W-1(V523_D-1) ] Succ: [G:W-1(V525_D-1) C:W-1(V813_D-1) ] NODE_DESCR: G:W-1(V525_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V526_D-1) ] NODE_DESCR: A:W-1(V526_D-1) Preds: [G:W-1(V525_D-1) ] Succ: [G:W-1(V527_D-1) ] NODE_DESCR: G:W-1(V527_D-1) Preds: [A:W-1(V526_D-1) ] Succ: [C:W-1(V528_D-1) ] NODE_DESCR: C:W-1(V528_D-1) Preds: [G:W-1(V527_D-1) ] Succ: [A:W-1(V529_D-1) ] NODE_DESCR: A:W-1(V529_D-1) Preds: [C:W-1(V528_D-1) ] Succ: [C:W-1(V530_D-1) ] NODE_DESCR: C:W-1(V530_D-1) Preds: [A:W-1(V529_D-1) ] Succ: [T:W-1(V531_D-1) ] NODE_DESCR: T:W-1(V531_D-1) Preds: [C:W-1(V530_D-1) ] Succ: [C:W-1(V532_D-1) ] NODE_DESCR: C:W-1(V532_D-1) Preds: [T:W-1(V531_D-1) ] Succ: [T:W-1(V533_D-1) ] NODE_DESCR: T:W-1(V533_D-1) Preds: [C:W-1(V532_D-1) ] Succ: [G:W-1(V534_D-1) ] NODE_DESCR: G:W-1(V534_D-1) Preds: [T:W-1(V533_D-1) ] Succ: [A:W-1(V535_D-1) ] NODE_DESCR: A:W-1(V535_D-1) Preds: [G:W-1(V534_D-1) ] Succ: [A:W-1(V536_D-1) ] NODE_DESCR: A:W-1(V536_D-1) Preds: [A:W-1(V535_D-1) ] Succ: [C:W-1(V537_D-1) ] NODE_DESCR: C:W-1(V537_D-1) Preds: [A:W-1(V536_D-1) ] Succ: [C:W-1(V538_D-1) ] NODE_DESCR: C:W-1(V538_D-1) Preds: [C:W-1(V537_D-1) ] Succ: [C:W-1(V539_D-1) ] NODE_DESCR: C:W-1(V539_D-1) Preds: [C:W-1(V538_D-1) ] Succ: [T:W-1(V540_D-1) ] NODE_DESCR: T:W-1(V540_D-1) Preds: [C:W-1(V539_D-1) ] Succ: [G:W-1(V541_D-1) ] NODE_DESCR: G:W-1(V541_D-1) Preds: [T:W-1(V540_D-1) ] Succ: [T:W-1(V542_D-1) ] NODE_DESCR: T:W-1(V542_D-1) Preds: [G:W-1(V541_D-1) ] Succ: [G:W-1(V543_D-1) ] NODE_DESCR: G:W-1(V543_D-1) Preds: [T:W-1(V542_D-1) ] Succ: [A:W-1(V544_D-1) ] NODE_DESCR: A:W-1(V544_D-1) Preds: [G:W-1(V543_D-1) ] Succ: [G:W-1(V545_D-1) ] NODE_DESCR: G:W-1(V545_D-1) Preds: [A:W-1(V544_D-1) ] Succ: [G:W-1(V546_D-1) ] NODE_DESCR: G:W-1(V546_D-1) Preds: [G:W-1(V545_D-1) ] Succ: [C:W-1(V547_D-1) ] NODE_DESCR: C:W-1(V547_D-1) Preds: [G:W-1(V546_D-1) ] Succ: [A:W-1(V548_D-1) ] NODE_DESCR: A:W-1(V548_D-1) Preds: [C:W-1(V547_D-1) ] Succ: [A:W-1(V549_D-1) ] NODE_DESCR: A:W-1(V549_D-1) Preds: [A:W-1(V548_D-1) A:W-1(V836_D-1) ] Succ: [G:W-1(V550_D-1) ] NODE_DESCR: G:W-1(V550_D-1) Preds: [A:W-1(V549_D-1) ] Succ: [T:W-1(V551_D-1) ] NODE_DESCR: T:W-1(V551_D-1) Preds: [G:W-1(V550_D-1) ] Succ: [C:W-1(V552_D-1) ] NODE_DESCR: C:W-1(V552_D-1) Preds: [T:W-1(V551_D-1) ] Succ: [C:W-1(V553_D-1) ] NODE_DESCR: C:W-1(V553_D-1) Preds: [C:W-1(V552_D-1) ] Succ: [A:W-1(V554_D-1) ] NODE_DESCR: A:W-1(V554_D-1) Preds: [C:W-1(V553_D-1) ] Succ: [C:W-1(V555_D-1) ] NODE_DESCR: C:W-1(V555_D-1) Preds: [A:W-1(V554_D-1) ] Succ: [C:W-1(V556_D-1) ] NODE_DESCR: C:W-1(V556_D-1) Preds: [C:W-1(V555_D-1) ] Succ: [A:W-1(V557_D-1) ] NODE_DESCR: A:W-1(V557_D-1) Preds: [C:W-1(V556_D-1) ] Succ: [C:W-1(V558_D-1) ] NODE_DESCR: C:W-1(V558_D-1) Preds: [A:W-1(V557_D-1) ] Succ: [C:W-1(V559_D-1) ] NODE_DESCR: C:W-1(V559_D-1) Preds: [C:W-1(V558_D-1) ] Succ: [A:W-1(V560_D-1) ] NODE_DESCR: A:W-1(V560_D-1) Preds: [C:W-1(V559_D-1) ] Succ: [G:W-1(V561_D-1) ] NODE_DESCR: G:W-1(V561_D-1) Preds: [A:W-1(V560_D-1) ] Succ: [C:W-1(V562_D-1) ] NODE_DESCR: C:W-1(V562_D-1) Preds: [G:W-1(V561_D-1) ] Succ: [G:W-1(V563_D-1) ] NODE_DESCR: G:W-1(V563_D-1) Preds: [C:W-1(V562_D-1) ] Succ: [T:W-1(V564_D-1) ] NODE_DESCR: T:W-1(V564_D-1) Preds: [G:W-1(V563_D-1) ] Succ: [A:W-1(V565_D-1) ] NODE_DESCR: A:W-1(V565_D-1) Preds: [T:W-1(V564_D-1) ] Succ: [T:W-1(V566_D-1) ] NODE_DESCR: T:W-1(V566_D-1) Preds: [A:W-1(V565_D-1) ] Succ: [C:W-1(V567_D-1) ] NODE_DESCR: C:W-1(V567_D-1) Preds: [T:W-1(V566_D-1) ] Succ: [T:W-1(V568_D-1) ] NODE_DESCR: T:W-1(V568_D-1) Preds: [C:W-1(V567_D-1) ] Succ: [A:W-1(V569_D-1) ] NODE_DESCR: A:W-1(V569_D-1) Preds: [T:W-1(V568_D-1) ] Succ: [G:W-1(V570_D-1) ] NODE_DESCR: G:W-1(V570_D-1) Preds: [A:W-1(V569_D-1) ] Succ: [A:W-1(V571_D-1) ] NODE_DESCR: A:W-1(V571_D-1) Preds: [G:W-1(V570_D-1) ] Succ: [C:W-1(V572_D-1) ] NODE_DESCR: C:W-1(V572_D-1) Preds: [A:W-1(V571_D-1) ] Succ: [C:W-1(V573_D-1) ] NODE_DESCR: C:W-1(V573_D-1) Preds: [C:W-1(V572_D-1) ] Succ: [C:W-1(V574_D-1) ] NODE_DESCR: C:W-1(V574_D-1) Preds: [C:W-1(V573_D-1) ] Succ: [A:W-1(V575_D-1) ] NODE_DESCR: A:W-1(V575_D-1) Preds: [C:W-1(V574_D-1) ] Succ: [G:W-1(V576_D-1) ] NODE_DESCR: G:W-1(V576_D-1) Preds: [A:W-1(V575_D-1) ] Succ: [G:W-1(V577_D-1) ] NODE_DESCR: G:W-1(V577_D-1) Preds: [G:W-1(V576_D-1) ] Succ: [C:W-1(V578_D-1) ] NODE_DESCR: C:W-1(V578_D-1) Preds: [G:W-1(V577_D-1) ] Succ: [C:W-1(V579_D-1) ] NODE_DESCR: C:W-1(V579_D-1) Preds: [C:W-1(V578_D-1) ] Succ: [A:W-1(V580_D-1) ] NODE_DESCR: A:W-1(V580_D-1) Preds: [C:W-1(V579_D-1) ] Succ: [T:W-1(V581_D-1) ] NODE_DESCR: T:W-1(V581_D-1) Preds: [A:W-1(V580_D-1) ] Succ: [C:W-1(V582_D-1) ] NODE_DESCR: C:W-1(V582_D-1) Preds: [T:W-1(V581_D-1) ] Succ: [T:W-1(V583_D-1) ] NODE_DESCR: T:W-1(V583_D-1) Preds: [C:W-1(V582_D-1) ] Succ: [A:W-1(V584_D-1) ] NODE_DESCR: A:W-1(V584_D-1) Preds: [T:W-1(V583_D-1) ] Succ: [A:W-1(V585_D-1) ] NODE_DESCR: A:W-1(V585_D-1) Preds: [A:W-1(V584_D-1) ] Succ: [T:W-1(V586_D-1) ] NODE_DESCR: T:W-1(V586_D-1) Preds: [A:W-1(V585_D-1) ] Succ: [A:W-1(V587_D-1) ] NODE_DESCR: A:W-1(V587_D-1) Preds: [T:W-1(V586_D-1) ] Succ: [A:W-1(V588_D-1) ] NODE_DESCR: A:W-1(V588_D-1) Preds: [A:W-1(V587_D-1) ] Succ: [A:W-1(V589_D-1) ] NODE_DESCR: A:W-1(V589_D-1) Preds: [A:W-1(V588_D-1) ] Succ: [G:W-1(V590_D-1) ] NODE_DESCR: G:W-1(V590_D-1) Preds: [A:W-1(V589_D-1) ] Succ: [G:W-1(V591_D-1) ] NODE_DESCR: G:W-1(V591_D-1) Preds: [G:W-1(V590_D-1) ] Succ: [A:W-1(V592_D-1) ] NODE_DESCR: A:W-1(V592_D-1) Preds: [G:W-1(V591_D-1) ] Succ: [A:W-1(V593_D-1) ] NODE_DESCR: A:W-1(V593_D-1) Preds: [A:W-1(V592_D-1) ] Succ: [A:W-1(V594_D-1) ] NODE_DESCR: A:W-1(V594_D-1) Preds: [A:W-1(V593_D-1) ] Succ: [A:W-1(V595_D-1) ] NODE_DESCR: A:W-1(V595_D-1) Preds: [A:W-1(V594_D-1) ] Succ: [C:W-1(V596_D-1) ] NODE_DESCR: C:W-1(V596_D-1) Preds: [A:W-1(V595_D-1) ] Succ: [T:W-1(V597_D-1) ] NODE_DESCR: T:W-1(V597_D-1) Preds: [C:W-1(V596_D-1) ] Succ: [G:W-1(V598_D-1) ] NODE_DESCR: G:W-1(V598_D-1) Preds: [T:W-1(V597_D-1) ] Succ: [C:W-1(V599_D-1) ] NODE_DESCR: C:W-1(V599_D-1) Preds: [G:W-1(V598_D-1) ] Succ: [A:W-1(V600_D-1) ] NODE_DESCR: A:W-1(V600_D-1) Preds: [C:W-1(V599_D-1) ] Succ: [T:W-1(V601_D-1) ] NODE_DESCR: T:W-1(V601_D-1) Preds: [A:W-1(V600_D-1) ] Succ: [C:W-1(V602_D-1) ] NODE_DESCR: C:W-1(V602_D-1) Preds: [T:W-1(V601_D-1) ] Succ: [T:W-1(V603_D-1) ] NODE_DESCR: T:W-1(V603_D-1) Preds: [C:W-1(V602_D-1) ] Succ: [T:W-1(V604_D-1) ] NODE_DESCR: T:W-1(V604_D-1) Preds: [T:W-1(V603_D-1) ] Succ: [T:W-1(V605_D-1) ] NODE_DESCR: T:W-1(V605_D-1) Preds: [T:W-1(V604_D-1) ] Succ: [G:W-1(V606_D-1) ] NODE_DESCR: G:W-1(V606_D-1) Preds: [T:W-1(V605_D-1) ] Succ: [C:W-1(V607_D-1) ] NODE_DESCR: C:W-1(V607_D-1) Preds: [G:W-1(V606_D-1) ] Succ: [C:W-1(V608_D-1) ] NODE_DESCR: C:W-1(V608_D-1) Preds: [C:W-1(V607_D-1) ] Succ: [C:W-1(V609_D-1) ] NODE_DESCR: C:W-1(V609_D-1) Preds: [C:W-1(V608_D-1) ] Succ: [A:W-1(V610_D-1) ] NODE_DESCR: A:W-1(V610_D-1) Preds: [C:W-1(V609_D-1) ] Succ: [C:W-1(V611_D-1) ] NODE_DESCR: C:W-1(V611_D-1) Preds: [A:W-1(V610_D-1) ] Succ: [A:W-1(V612_D-1) ] NODE_DESCR: A:W-1(V612_D-1) Preds: [C:W-1(V611_D-1) ] Succ: [T:W-1(V613_D-1) ] NODE_DESCR: T:W-1(V613_D-1) Preds: [A:W-1(V612_D-1) ] Succ: [G:W-1(V614_D-1) ] NODE_DESCR: G:W-1(V614_D-1) Preds: [T:W-1(V613_D-1) ] Succ: [A:W-1(V615_D-1) ] NODE_DESCR: A:W-1(V615_D-1) Preds: [G:W-1(V614_D-1) ] Succ: [T:W-1(V616_D-1) ] NODE_DESCR: T:W-1(V616_D-1) Preds: [A:W-1(V615_D-1) ] Succ: [G:W-1(V617_D-1) ] NODE_DESCR: G:W-1(V617_D-1) Preds: [T:W-1(V616_D-1) ] Succ: [C:W-1(V618_D-1) ] NODE_DESCR: C:W-1(V618_D-1) Preds: [G:W-1(V617_D-1) ] Succ: [T:W-1(V619_D-1) ] NODE_DESCR: T:W-1(V619_D-1) Preds: [C:W-1(V618_D-1) ] Succ: [T:W-1(V620_D-1) ] NODE_DESCR: T:W-1(V620_D-1) Preds: [T:W-1(V619_D-1) ] Succ: [G:W-1(V621_D-1) ] NODE_DESCR: G:W-1(V621_D-1) Preds: [T:W-1(V620_D-1) ] Succ: [G:W-1(V622_D-1) ] NODE_DESCR: G:W-1(V622_D-1) Preds: [G:W-1(V621_D-1) ] Succ: [T:W-1(V623_D-1) ] NODE_DESCR: T:W-1(V623_D-1) Preds: [G:W-1(V622_D-1) ] Succ: [T:W-1(V624_D-1) ] NODE_DESCR: T:W-1(V624_D-1) Preds: [T:W-1(V623_D-1) ] Succ: [A:W-1(V625_D-1) ] NODE_DESCR: A:W-1(V625_D-1) Preds: [T:W-1(V624_D-1) ] Succ: [A:W-1(V626_D-1) ] NODE_DESCR: A:W-1(V626_D-1) Preds: [A:W-1(V625_D-1) ] Succ: [G:W-1(V627_D-1) ] NODE_DESCR: G:W-1(V627_D-1) Preds: [A:W-1(V626_D-1) ] Succ: [A:W-1(V628_D-1) ] NODE_DESCR: A:W-1(V628_D-1) Preds: [G:W-1(V627_D-1) ] Succ: [C:W-1(V629_D-1) ] NODE_DESCR: C:W-1(V629_D-1) Preds: [A:W-1(V628_D-1) ] Succ: [A:W-1(V630_D-1) ] NODE_DESCR: A:W-1(V630_D-1) Preds: [C:W-1(V629_D-1) ] Succ: [A:W-1(V631_D-1) ] NODE_DESCR: A:W-1(V631_D-1) Preds: [A:W-1(V630_D-1) ] Succ: [G:W-1(V632_D-1) ] NODE_DESCR: G:W-1(V632_D-1) Preds: [A:W-1(V631_D-1) ] Succ: [G:W-1(V633_D-1) ] NODE_DESCR: G:W-1(V633_D-1) Preds: [G:W-1(V632_D-1) ] Succ: [G:W-1(V634_D-1) ] NODE_DESCR: G:W-1(V634_D-1) Preds: [G:W-1(V633_D-1) ] Succ: [G:W-1(V635_D-1) ] NODE_DESCR: G:W-1(V635_D-1) Preds: [G:W-1(V634_D-1) ] Succ: [T:W-1(V636_D-1) ] NODE_DESCR: T:W-1(V636_D-1) Preds: [G:W-1(V635_D-1) ] Succ: [T:W-1(V637_D-1) ] NODE_DESCR: T:W-1(V637_D-1) Preds: [T:W-1(V636_D-1) ] Succ: [A:W-1(V638_D-1) ] NODE_DESCR: A:W-1(V638_D-1) Preds: [T:W-1(V637_D-1) ] Succ: [G:W-1(V639_D-1) ] NODE_DESCR: G:W-1(V639_D-1) Preds: [A:W-1(V638_D-1) ] Succ: [T:W-1(V640_D-1) ] NODE_DESCR: T:W-1(V640_D-1) Preds: [G:W-1(V639_D-1) ] Succ: [G:W-1(V641_D-1) ] NODE_DESCR: G:W-1(V641_D-1) Preds: [T:W-1(V640_D-1) ] Succ: [A:W-1(V642_D-1) ] NODE_DESCR: A:W-1(V642_D-1) Preds: [G:W-1(V641_D-1) ] Succ: [C:W-1(V643_D-1) ] NODE_DESCR: C:W-1(V643_D-1) Preds: [A:W-1(V642_D-1) ] Succ: [A:W-1(V644_D-1) ] NODE_DESCR: A:W-1(V644_D-1) Preds: [C:W-1(V643_D-1) ] Succ: [A:W-1(V645_D-1) ] NODE_DESCR: A:W-1(V645_D-1) Preds: [A:W-1(V644_D-1) ] Succ: [A:W-1(V646_D-1) ] NODE_DESCR: A:W-1(V646_D-1) Preds: [A:W-1(V645_D-1) ] Succ: [G:W-1(V647_D-1) ] NODE_DESCR: G:W-1(V647_D-1) Preds: [A:W-1(V646_D-1) ] Succ: [T:W-1(V648_D-1) ] NODE_DESCR: T:W-1(V648_D-1) Preds: [G:W-1(V647_D-1) ] Succ: [A:W-1(V649_D-1) ] NODE_DESCR: A:W-1(V649_D-1) Preds: [T:W-1(V648_D-1) ] Succ: [A:W-1(V650_D-1) ] NODE_DESCR: A:W-1(V650_D-1) Preds: [A:W-1(V649_D-1) ] Succ: [A:W-1(V651_D-1) ] NODE_DESCR: A:W-1(V651_D-1) Preds: [A:W-1(V650_D-1) ] Succ: [G:W-1(V652_D-1) ] NODE_DESCR: G:W-1(V652_D-1) Preds: [A:W-1(V651_D-1) ] Succ: [A:W-1(V653_D-1) ] NODE_DESCR: A:W-1(V653_D-1) Preds: [G:W-1(V652_D-1) ] Succ: [G:W-1(V654_D-1) ] NODE_DESCR: G:W-1(V654_D-1) Preds: [A:W-1(V653_D-1) ] Succ: [G:W-1(V655_D-1) ] NODE_DESCR: G:W-1(V655_D-1) Preds: [G:W-1(V654_D-1) ] Succ: [A:W-1(V656_D-1) ] NODE_DESCR: A:W-1(V656_D-1) Preds: [G:W-1(V655_D-1) ] Succ: [T:W-1(V657_D-1) ] NODE_DESCR: T:W-1(V657_D-1) Preds: [A:W-1(V656_D-1) ] Succ: [G:W-1(V658_D-1) ] NODE_DESCR: G:W-1(V658_D-1) Preds: [T:W-1(V657_D-1) ] Succ: [A:W-1(V659_D-1) ] NODE_DESCR: A:W-1(V659_D-1) Preds: [G:W-1(V658_D-1) ] Succ: [C:W-1(V660_D-1) ] NODE_DESCR: C:W-1(V660_D-1) Preds: [A:W-1(V659_D-1) ] Succ: [A:W-1(V661_D-1) ] NODE_DESCR: A:W-1(V661_D-1) Preds: [C:W-1(V660_D-1) ] Succ: [G:W-1(V662_D-1) ] NODE_DESCR: G:W-1(V662_D-1) Preds: [A:W-1(V661_D-1) ] Succ: [A:W-1(V663_D-1) ] NODE_DESCR: A:W-1(V663_D-1) Preds: [G:W-1(V662_D-1) ] Succ: [C:W-1(V664_D-1) ] NODE_DESCR: C:W-1(V664_D-1) Preds: [A:W-1(V663_D-1) ] Succ: [T:W-1(V665_D-1) ] NODE_DESCR: T:W-1(V665_D-1) Preds: [C:W-1(V664_D-1) ] Succ: [C:W-1(V666_D-1) ] NODE_DESCR: C:W-1(V666_D-1) Preds: [T:W-1(V665_D-1) ] Succ: [T:W-1(V667_D-1) ] NODE_DESCR: T:W-1(V667_D-1) Preds: [C:W-1(V666_D-1) ] Succ: [C:W-1(V668_D-1) ] NODE_DESCR: C:W-1(V668_D-1) Preds: [T:W-1(V667_D-1) ] Succ: [T:W-1(V669_D-1) ] NODE_DESCR: T:W-1(V669_D-1) Preds: [C:W-1(V668_D-1) ] Succ: [A:W-1(V670_D-1) ] NODE_DESCR: A:W-1(V670_D-1) Preds: [T:W-1(V669_D-1) ] Succ: [A:W-1(V671_D-1) ] NODE_DESCR: A:W-1(V671_D-1) Preds: [A:W-1(V670_D-1) ] Succ: [G:W-1(V672_D-1) ] NODE_DESCR: G:W-1(V672_D-1) Preds: [A:W-1(V671_D-1) ] Succ: [G:W-1(V673_D-1) ] NODE_DESCR: G:W-1(V673_D-1) Preds: [G:W-1(V672_D-1) ] Succ: [G:W-1(V674_D-1) ] NODE_DESCR: G:W-1(V674_D-1) Preds: [G:W-1(V673_D-1) ] Succ: [A:W-1(V675_D-1) ] NODE_DESCR: A:W-1(V675_D-1) Preds: [G:W-1(V674_D-1) ] Succ: [C:W-1(V676_D-1) ] NODE_DESCR: C:W-1(V676_D-1) Preds: [A:W-1(V675_D-1) ] Succ: [A:W-1(V677_D-1) ] NODE_DESCR: A:W-1(V677_D-1) Preds: [C:W-1(V676_D-1) ] Succ: [T:W-1(V678_D-1) ] NODE_DESCR: T:W-1(V678_D-1) Preds: [A:W-1(V677_D-1) ] Succ: [A:W-1(V679_D-1) ] NODE_DESCR: A:W-1(V679_D-1) Preds: [T:W-1(V678_D-1) ] Succ: [T:W-1(V680_D-1) ] NODE_DESCR: T:W-1(V680_D-1) Preds: [A:W-1(V679_D-1) ] Succ: [G:W-1(V681_D-1) ] NODE_DESCR: G:W-1(V681_D-1) Preds: [T:W-1(V680_D-1) ] Succ: [G:W-1(V682_D-1) ] NODE_DESCR: G:W-1(V682_D-1) Preds: [G:W-1(V681_D-1) ] Succ: [G:W-1(V683_D-1) ] NODE_DESCR: G:W-1(V683_D-1) Preds: [G:W-1(V682_D-1) ] Succ: [A:W-1(V684_D-1) ] NODE_DESCR: A:W-1(V684_D-1) Preds: [G:W-1(V683_D-1) ] Succ: [G:W-1(V685_D-1) ] NODE_DESCR: G:W-1(V685_D-1) Preds: [A:W-1(V684_D-1) ] Succ: [C:W-1(V686_D-1) ] NODE_DESCR: C:W-1(V686_D-1) Preds: [G:W-1(V685_D-1) ] Succ: [T:W-1(V687_D-1) ] NODE_DESCR: T:W-1(V687_D-1) Preds: [C:W-1(V686_D-1) ] Succ: [A:W-1(V688_D-1) ] NODE_DESCR: A:W-1(V688_D-1) Preds: [T:W-1(V687_D-1) ] Succ: [C:W-1(V689_D-1) ] NODE_DESCR: C:W-1(V689_D-1) Preds: [A:W-1(V688_D-1) ] Succ: [A:W-1(V690_D-1) ] NODE_DESCR: A:W-1(V690_D-1) Preds: [C:W-1(V689_D-1) ] Succ: [T:W-1(V691_D-1) ] NODE_DESCR: T:W-1(V691_D-1) Preds: [A:W-1(V690_D-1) ] Succ: [A:W-1(V692_D-1) ] NODE_DESCR: A:W-1(V692_D-1) Preds: [T:W-1(V691_D-1) ] Succ: [G:W-1(V693_D-1) ] NODE_DESCR: G:W-1(V693_D-1) Preds: [A:W-1(V692_D-1) ] Succ: [C:W-1(V694_D-1) ] NODE_DESCR: C:W-1(V694_D-1) Preds: [G:W-1(V693_D-1) ] Succ: [C:W-1(V695_D-1) ] NODE_DESCR: C:W-1(V695_D-1) Preds: [C:W-1(V694_D-1) ] Succ: [A:W-1(V696_D-1) ] NODE_DESCR: A:W-1(V696_D-1) Preds: [C:W-1(V695_D-1) ] Succ: [G:W-1(V697_D-1) ] NODE_DESCR: G:W-1(V697_D-1) Preds: [A:W-1(V696_D-1) ] Succ: [C:W-1(V698_D-1) ] NODE_DESCR: C:W-1(V698_D-1) Preds: [G:W-1(V697_D-1) ] Succ: [C:W-1(V699_D-1) ] NODE_DESCR: C:W-1(V699_D-1) Preds: [C:W-1(V698_D-1) ] Succ: [C:W-1(V700_D-1) ] NODE_DESCR: C:W-1(V700_D-1) Preds: [C:W-1(V699_D-1) ] Succ: [C:W-1(V701_D-1) ] NODE_DESCR: C:W-1(V701_D-1) Preds: [C:W-1(V700_D-1) ] Succ: [G:W-1(V702_D-1) ] NODE_DESCR: G:W-1(V702_D-1) Preds: [C:W-1(V701_D-1) ] Succ: [T:W-1(V703_D-1) ] NODE_DESCR: T:W-1(V703_D-1) Preds: [G:W-1(V702_D-1) ] Succ: [G:W-1(V704_D-1) ] NODE_DESCR: G:W-1(V704_D-1) Preds: [T:W-1(V703_D-1) ] Succ: [G:W-1(V705_D-1) ] NODE_DESCR: G:W-1(V705_D-1) Preds: [G:W-1(V704_D-1) ] Succ: [A:W-1(V706_D-1) ] NODE_DESCR: A:W-1(V706_D-1) Preds: [G:W-1(V705_D-1) ] Succ: [G:W-1(V707_D-1) ] NODE_DESCR: G:W-1(V707_D-1) Preds: [A:W-1(V706_D-1) ] Succ: [G:W-1(V708_D-1) ] NODE_DESCR: G:W-1(V708_D-1) Preds: [G:W-1(V707_D-1) ] Succ: [G:W-1(V709_D-1) ] NODE_DESCR: G:W-1(V709_D-1) Preds: [G:W-1(V708_D-1) ] Succ: [A:W-1(V710_D-1) ] NODE_DESCR: A:W-1(V710_D-1) Preds: [G:W-1(V709_D-1) ] Succ: [G:W-1(V711_D-1) ] NODE_DESCR: G:W-1(V711_D-1) Preds: [A:W-1(V710_D-1) ] Succ: [C:W-1(V712_D-1) ] NODE_DESCR: C:W-1(V712_D-1) Preds: [G:W-1(V711_D-1) ] Succ: [C:W-1(V713_D-1) ] NODE_DESCR: C:W-1(V713_D-1) Preds: [C:W-1(V712_D-1) ] Succ: [A:W-1(V714_D-1) ] NODE_DESCR: A:W-1(V714_D-1) Preds: [C:W-1(V713_D-1) ] Succ: [C:W-1(V715_D-1) ] NODE_DESCR: C:W-1(V715_D-1) Preds: [A:W-1(V714_D-1) ] Succ: [C:W-1(V716_D-1) ] NODE_DESCR: C:W-1(V716_D-1) Preds: [C:W-1(V715_D-1) ] Succ: [A:W-1(V717_D-1) ] NODE_DESCR: A:W-1(V717_D-1) Preds: [C:W-1(V716_D-1) C:W-1(V812_D-1) ] Succ: [G:W-1(V718_D-1) ] NODE_DESCR: G:W-1(V718_D-1) Preds: [A:W-1(V717_D-1) ] Succ: [C:W-1(V719_D-1) ] NODE_DESCR: C:W-1(V719_D-1) Preds: [G:W-1(V718_D-1) ] Succ: [C:W-1(V720_D-1) ] NODE_DESCR: C:W-1(V720_D-1) Preds: [C:W-1(V719_D-1) ] Succ: [A:W-1(V721_D-1) ] NODE_DESCR: A:W-1(V721_D-1) Preds: [C:W-1(V720_D-1) ] Succ: [C:W-1(V722_D-1) ] NODE_DESCR: C:W-1(V722_D-1) Preds: [A:W-1(V721_D-1) ] Succ: [A:W-1(V723_D-1) ] NODE_DESCR: A:W-1(V723_D-1) Preds: [C:W-1(V722_D-1) ] Succ: [G:W-1(V724_D-1) ] NODE_DESCR: G:W-1(V724_D-1) Preds: [A:W-1(V723_D-1) ] Succ: [G:W-1(V725_D-1) ] NODE_DESCR: G:W-1(V725_D-1) Preds: [G:W-1(V724_D-1) ] Succ: [T:W-1(V726_D-1) ] NODE_DESCR: T:W-1(V726_D-1) Preds: [G:W-1(V725_D-1) ] Succ: [A:W-1(V727_D-1) ] NODE_DESCR: A:W-1(V727_D-1) Preds: [T:W-1(V726_D-1) ] Succ: [C:W-1(V728_D-1) ] NODE_DESCR: C:W-1(V728_D-1) Preds: [A:W-1(V727_D-1) ] Succ: [C:W-1(V729_D-1) ] NODE_DESCR: C:W-1(V729_D-1) Preds: [C:W-1(V728_D-1) ] Succ: [T:W-1(V730_D-1) ] NODE_DESCR: T:W-1(V730_D-1) Preds: [C:W-1(V729_D-1) ] Succ: [G:W-1(V731_D-1) ] NODE_DESCR: G:W-1(V731_D-1) Preds: [T:W-1(V730_D-1) ] Succ: [A:W-1(V732_D-1) ] NODE_DESCR: A:W-1(V732_D-1) Preds: [G:W-1(V731_D-1) ] Succ: [T:W-1(V733_D-1) ] NODE_DESCR: T:W-1(V733_D-1) Preds: [A:W-1(V732_D-1) ] Succ: [G:W-1(V734_D-1) ] NODE_DESCR: G:W-1(V734_D-1) Preds: [T:W-1(V733_D-1) ] Succ: [G:W-1(V735_D-1) ] NODE_DESCR: G:W-1(V735_D-1) Preds: [G:W-1(V734_D-1) ] Succ: [A:W-1(V736_D-1) ] NODE_DESCR: A:W-1(V736_D-1) Preds: [G:W-1(V735_D-1) ] Succ: [A:W-1(V737_D-1) ] NODE_DESCR: A:W-1(V737_D-1) Preds: [A:W-1(V736_D-1) ] Succ: [A:W-1(V738_D-1) ] NODE_DESCR: A:W-1(V738_D-1) Preds: [A:W-1(V737_D-1) ] Succ: [T:W-1(V739_D-1) ] NODE_DESCR: T:W-1(V739_D-1) Preds: [A:W-1(V738_D-1) ] Succ: [G:W-1(V740_D-1) ] NODE_DESCR: G:W-1(V740_D-1) Preds: [T:W-1(V739_D-1) ] Succ: [C:W-1(V741_D-1) ] NODE_DESCR: C:W-1(V741_D-1) Preds: [G:W-1(V740_D-1) ] Succ: [C:W-1(V742_D-1) ] NODE_DESCR: C:W-1(V742_D-1) Preds: [C:W-1(V741_D-1) ] Succ: [G:W-1(V743_D-1) ] NODE_DESCR: G:W-1(V743_D-1) Preds: [C:W-1(V742_D-1) ] Succ: [G:W-1(V744_D-1) ] NODE_DESCR: G:W-1(V744_D-1) Preds: [G:W-1(V743_D-1) ] Succ: [C:W-1(V745_D-1) ] NODE_DESCR: C:W-1(V745_D-1) Preds: [G:W-1(V744_D-1) ] Succ: [T:W-1(V746_D-1) ] NODE_DESCR: T:W-1(V746_D-1) Preds: [C:W-1(V745_D-1) ] Succ: [C:W-1(V747_D-1) ] NODE_DESCR: C:W-1(V747_D-1) Preds: [T:W-1(V746_D-1) ] Succ: [A:W-1(V748_D-1) ] NODE_DESCR: A:W-1(V748_D-1) Preds: [C:W-1(V747_D-1) ] Succ: [C:W-1(V749_D-1) ] NODE_DESCR: C:W-1(V749_D-1) Preds: [A:W-1(V748_D-1) ] Succ: [T:W-1(V750_D-1) ] NODE_DESCR: T:W-1(V750_D-1) Preds: [C:W-1(V749_D-1) ] Succ: [T:W-1(V751_D-1) ] NODE_DESCR: T:W-1(V751_D-1) Preds: [T:W-1(V750_D-1) ] Succ: [C:W-1(V752_D-1) ] NODE_DESCR: C:W-1(V752_D-1) Preds: [T:W-1(V751_D-1) ] Succ: [C:W-1(V753_D-1) ] NODE_DESCR: C:W-1(V753_D-1) Preds: [C:W-1(V752_D-1) ] Succ: [T:W-1(V754_D-1) ] NODE_DESCR: T:W-1(V754_D-1) Preds: [C:W-1(V753_D-1) ] Succ: [G:W-1(V755_D-1) ] NODE_DESCR: G:W-1(V755_D-1) Preds: [T:W-1(V754_D-1) ] Succ: [T:W-1(V756_D-1) ] NODE_DESCR: T:W-1(V756_D-1) Preds: [G:W-1(V755_D-1) ] Succ: [G:W-1(V757_D-1) ] NODE_DESCR: G:W-1(V757_D-1) Preds: [T:W-1(V756_D-1) ] Succ: [A:W-1(V758_D-1) ] NODE_DESCR: A:W-1(V758_D-1) Preds: [G:W-1(V757_D-1) ] Succ: [] NODE_DESCR: GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) Preds: [] Succ: [A:W-1(V787_D-1) ] NODE_DESCR: A:W-1(V787_D-1) Preds: [GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) ] Succ: [A:W-1(V788_D-1) ] NODE_DESCR: A:W-1(V788_D-1) Preds: [A:W-1(V787_D-1) ] Succ: [C:W-1(V789_D-1) ] NODE_DESCR: C:W-1(V789_D-1) Preds: [A:W-1(V788_D-1) ] Succ: [C:W-1(V790_D-1) ] NODE_DESCR: C:W-1(V790_D-1) Preds: [C:W-1(V789_D-1) ] Succ: [C:W-1(V791_D-1) ] NODE_DESCR: C:W-1(V791_D-1) Preds: [C:W-1(V790_D-1) ] Succ: [A:W-1(V792_D-1) ] NODE_DESCR: A:W-1(V792_D-1) Preds: [C:W-1(V791_D-1) ] Succ: [G:W-1(V793_D-1) ] NODE_DESCR: G:W-1(V793_D-1) Preds: [A:W-1(V792_D-1) ] Succ: [C:W-1(V794_D-1) ] NODE_DESCR: C:W-1(V794_D-1) Preds: [G:W-1(V793_D-1) ] Succ: [C:W-1(V795_D-1) ] NODE_DESCR: C:W-1(V795_D-1) Preds: [C:W-1(V794_D-1) ] Succ: [C:W-1(V796_D-1) ] NODE_DESCR: C:W-1(V796_D-1) Preds: [C:W-1(V795_D-1) ] Succ: [C:W-1(V797_D-1) ] NODE_DESCR: C:W-1(V797_D-1) Preds: [C:W-1(V796_D-1) ] Succ: [G:W-1(V798_D-1) ] NODE_DESCR: G:W-1(V798_D-1) Preds: [C:W-1(V797_D-1) ] Succ: [T:W-1(V799_D-1) ] NODE_DESCR: T:W-1(V799_D-1) Preds: [G:W-1(V798_D-1) ] Succ: [G:W-1(V800_D-1) ] NODE_DESCR: G:W-1(V800_D-1) Preds: [T:W-1(V799_D-1) ] Succ: [G:W-1(V801_D-1) ] NODE_DESCR: G:W-1(V801_D-1) Preds: [G:W-1(V800_D-1) ] Succ: [A:W-1(V802_D-1) ] NODE_DESCR: A:W-1(V802_D-1) Preds: [G:W-1(V801_D-1) ] Succ: [G:W-1(V803_D-1) ] NODE_DESCR: G:W-1(V803_D-1) Preds: [A:W-1(V802_D-1) ] Succ: [G:W-1(V804_D-1) ] NODE_DESCR: G:W-1(V804_D-1) Preds: [G:W-1(V803_D-1) ] Succ: [G:W-1(V805_D-1) ] NODE_DESCR: G:W-1(V805_D-1) Preds: [G:W-1(V804_D-1) ] Succ: [A:W-1(V806_D-1) ] NODE_DESCR: A:W-1(V806_D-1) Preds: [G:W-1(V805_D-1) ] Succ: [G:W-1(V807_D-1) ] NODE_DESCR: G:W-1(V807_D-1) Preds: [A:W-1(V806_D-1) ] Succ: [C:W-1(V808_D-1) ] NODE_DESCR: C:W-1(V808_D-1) Preds: [G:W-1(V807_D-1) ] Succ: [C:W-1(V809_D-1) ] NODE_DESCR: C:W-1(V809_D-1) Preds: [C:W-1(V808_D-1) ] Succ: [A:W-1(V810_D-1) ] NODE_DESCR: A:W-1(V810_D-1) Preds: [C:W-1(V809_D-1) ] Succ: [C:W-1(V811_D-1) ] NODE_DESCR: C:W-1(V811_D-1) Preds: [A:W-1(V810_D-1) ] Succ: [C:W-1(V812_D-1) ] NODE_DESCR: C:W-1(V812_D-1) Preds: [C:W-1(V811_D-1) ] Succ: [A:W-1(V717_D-1) ] NODE_DESCR: C:W-1(V813_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V814_D-1) ] NODE_DESCR: A:W-1(V814_D-1) Preds: [C:W-1(V813_D-1) ] Succ: [G:W-1(V815_D-1) ] NODE_DESCR: G:W-1(V815_D-1) Preds: [A:W-1(V814_D-1) ] Succ: [C:W-1(V816_D-1) ] NODE_DESCR: C:W-1(V816_D-1) Preds: [G:W-1(V815_D-1) ] Succ: [A:W-1(V817_D-1) ] NODE_DESCR: A:W-1(V817_D-1) Preds: [C:W-1(V816_D-1) ] Succ: [C:W-1(V818_D-1) ] NODE_DESCR: C:W-1(V818_D-1) Preds: [A:W-1(V817_D-1) ] Succ: [T:W-1(V819_D-1) ] NODE_DESCR: T:W-1(V819_D-1) Preds: [C:W-1(V818_D-1) ] Succ: [C:W-1(V820_D-1) ] NODE_DESCR: C:W-1(V820_D-1) Preds: [T:W-1(V819_D-1) ] Succ: [T:W-1(V821_D-1) ] NODE_DESCR: T:W-1(V821_D-1) Preds: [C:W-1(V820_D-1) ] Succ: [G:W-1(V822_D-1) ] NODE_DESCR: G:W-1(V822_D-1) Preds: [T:W-1(V821_D-1) ] Succ: [A:W-1(V823_D-1) ] NODE_DESCR: A:W-1(V823_D-1) Preds: [G:W-1(V822_D-1) ] Succ: [A:W-1(V824_D-1) ] NODE_DESCR: A:W-1(V824_D-1) Preds: [A:W-1(V823_D-1) ] Succ: [C:W-1(V825_D-1) ] NODE_DESCR: C:W-1(V825_D-1) Preds: [A:W-1(V824_D-1) ] Succ: [C:W-1(V826_D-1) ] NODE_DESCR: C:W-1(V826_D-1) Preds: [C:W-1(V825_D-1) ] Succ: [C:W-1(V827_D-1) ] NODE_DESCR: C:W-1(V827_D-1) Preds: [C:W-1(V826_D-1) ] Succ: [T:W-1(V828_D-1) ] NODE_DESCR: T:W-1(V828_D-1) Preds: [C:W-1(V827_D-1) ] Succ: [G:W-1(V829_D-1) ] NODE_DESCR: G:W-1(V829_D-1) Preds: [T:W-1(V828_D-1) ] Succ: [T:W-1(V830_D-1) ] NODE_DESCR: T:W-1(V830_D-1) Preds: [G:W-1(V829_D-1) ] Succ: [G:W-1(V831_D-1) ] NODE_DESCR: G:W-1(V831_D-1) Preds: [T:W-1(V830_D-1) ] Succ: [A:W-1(V832_D-1) ] NODE_DESCR: A:W-1(V832_D-1) Preds: [G:W-1(V831_D-1) ] Succ: [G:W-1(V833_D-1) ] NODE_DESCR: G:W-1(V833_D-1) Preds: [A:W-1(V832_D-1) ] Succ: [G:W-1(V834_D-1) ] NODE_DESCR: G:W-1(V834_D-1) Preds: [G:W-1(V833_D-1) ] Succ: [C:W-1(V835_D-1) ] NODE_DESCR: C:W-1(V835_D-1) Preds: [G:W-1(V834_D-1) ] Succ: [A:W-1(V836_D-1) ] NODE_DESCR: A:W-1(V836_D-1) Preds: [C:W-1(V835_D-1) ] Succ: [A:W-1(V549_D-1) ] NODE_DESCR: G:W-1(V885_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V886_D-1) ] NODE_DESCR: C:W-1(V886_D-1) Preds: [G:W-1(V885_D-1) ] Succ: [T:W-1(V887_D-1) ] NODE_DESCR: T:W-1(V887_D-1) Preds: [C:W-1(V886_D-1) ] Succ: [C:W-1(V888_D-1) ] NODE_DESCR: C:W-1(V888_D-1) Preds: [T:W-1(V887_D-1) ] Succ: [A:W-1(V889_D-1) ] NODE_DESCR: A:W-1(V889_D-1) Preds: [C:W-1(V888_D-1) ] Succ: [T:W-1(V890_D-1) ] NODE_DESCR: T:W-1(V890_D-1) Preds: [A:W-1(V889_D-1) ] Succ: [C:W-1(V891_D-1) ] NODE_DESCR: C:W-1(V891_D-1) Preds: [T:W-1(V890_D-1) ] Succ: [A:W-1(V892_D-1) ] NODE_DESCR: A:W-1(V892_D-1) Preds: [C:W-1(V891_D-1) ] Succ: [G:W-1(V893_D-1) ] NODE_DESCR: G:W-1(V893_D-1) Preds: [A:W-1(V892_D-1) ] Succ: [C:W-1(V894_D-1) ] NODE_DESCR: C:W-1(V894_D-1) Preds: [G:W-1(V893_D-1) ] Succ: [A:W-1(V895_D-1) ] NODE_DESCR: A:W-1(V895_D-1) Preds: [C:W-1(V894_D-1) ] Succ: [A:W-1(V896_D-1) ] NODE_DESCR: A:W-1(V896_D-1) Preds: [A:W-1(V895_D-1) ] Succ: [G:W-1(V897_D-1) ] NODE_DESCR: G:W-1(V897_D-1) Preds: [A:W-1(V896_D-1) ] Succ: [A:W-1(V898_D-1) ] NODE_DESCR: A:W-1(V898_D-1) Preds: [G:W-1(V897_D-1) ] Succ: [A:W-1(V899_D-1) ] NODE_DESCR: A:W-1(V899_D-1) Preds: [A:W-1(V898_D-1) ] Succ: [G:W-1(V900_D-1) ] NODE_DESCR: G:W-1(V900_D-1) Preds: [A:W-1(V899_D-1) ] Succ: [A:W-1(V901_D-1) ] NODE_DESCR: A:W-1(V901_D-1) Preds: [G:W-1(V900_D-1) ] Succ: [A:W-1(V902_D-1) ] NODE_DESCR: A:W-1(V902_D-1) Preds: [A:W-1(V901_D-1) ] Succ: [A:W-1(V903_D-1) ] NODE_DESCR: A:W-1(V903_D-1) Preds: [A:W-1(V902_D-1) ] Succ: [T:W-1(V904_D-1) ] NODE_DESCR: T:W-1(V904_D-1) Preds: [A:W-1(V903_D-1) ] Succ: [C:W-1(V905_D-1) ] NODE_DESCR: C:W-1(V905_D-1) Preds: [T:W-1(V904_D-1) ] Succ: [T:W-1(V906_D-1) ] NODE_DESCR: T:W-1(V906_D-1) Preds: [C:W-1(V905_D-1) ] Succ: [T:W-1(V907_D-1) ] NODE_DESCR: T:W-1(V907_D-1) Preds: [T:W-1(V906_D-1) ] Succ: [T:W-1(V908_D-1) ] NODE_DESCR: T:W-1(V908_D-1) Preds: [T:W-1(V907_D-1) ] Succ: [C:W-1(V440_D-1) ] NODE_DESCR: AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) Preds: [] Succ: [C:W-1(V946_D-1) ] NODE_DESCR: C:W-1(V946_D-1) Preds: [AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) ] Succ: [C:W-1(V947_D-1) ] NODE_DESCR: C:W-1(V947_D-1) Preds: [C:W-1(V946_D-1) ] Succ: [T:W-1(V948_D-1) ] NODE_DESCR: T:W-1(V948_D-1) Preds: [C:W-1(V947_D-1) ] Succ: [C:W-1(V949_D-1) ] NODE_DESCR: C:W-1(V949_D-1) Preds: [T:W-1(V948_D-1) ] Succ: [A:W-1(V950_D-1) ] NODE_DESCR: A:W-1(V950_D-1) Preds: [C:W-1(V949_D-1) ] Succ: [T:W-1(V951_D-1) ] NODE_DESCR: T:W-1(V951_D-1) Preds: [A:W-1(V950_D-1) ] Succ: [C:W-1(V952_D-1) ] NODE_DESCR: C:W-1(V952_D-1) Preds: [T:W-1(V951_D-1) ] Succ: [A:W-1(V953_D-1) ] NODE_DESCR: A:W-1(V953_D-1) Preds: [C:W-1(V952_D-1) ] Succ: [G:W-1(V954_D-1) ] NODE_DESCR: G:W-1(V954_D-1) Preds: [A:W-1(V953_D-1) ] Succ: [C:W-1(V955_D-1) ] NODE_DESCR: C:W-1(V955_D-1) Preds: [G:W-1(V954_D-1) ] Succ: [A:W-1(V956_D-1) ] NODE_DESCR: A:W-1(V956_D-1) Preds: [C:W-1(V955_D-1) ] Succ: [G:W-1(V957_D-1) ] NODE_DESCR: G:W-1(V957_D-1) Preds: [A:W-1(V956_D-1) ] Succ: [G:W-1(V958_D-1) ] NODE_DESCR: G:W-1(V958_D-1) Preds: [G:W-1(V957_D-1) ] Succ: [A:W-1(V959_D-1) ] NODE_DESCR: A:W-1(V959_D-1) Preds: [G:W-1(V958_D-1) ] Succ: [A:W-1(V960_D-1) ] NODE_DESCR: A:W-1(V960_D-1) Preds: [A:W-1(V959_D-1) ] Succ: [G:W-1(V961_D-1) ] NODE_DESCR: G:W-1(V961_D-1) Preds: [A:W-1(V960_D-1) ] Succ: [A:W-1(V962_D-1) ] NODE_DESCR: A:W-1(V962_D-1) Preds: [G:W-1(V961_D-1) ] Succ: [A:W-1(V963_D-1) ] NODE_DESCR: A:W-1(V963_D-1) Preds: [A:W-1(V962_D-1) ] Succ: [A:W-1(V964_D-1) ] NODE_DESCR: A:W-1(V964_D-1) Preds: [A:W-1(V963_D-1) ] Succ: [T:W-1(V965_D-1) ] NODE_DESCR: T:W-1(V965_D-1) Preds: [A:W-1(V964_D-1) ] Succ: [C:W-1(V966_D-1) ] NODE_DESCR: C:W-1(V966_D-1) Preds: [T:W-1(V965_D-1) ] Succ: [T:W-1(V967_D-1) ] NODE_DESCR: T:W-1(V967_D-1) Preds: [C:W-1(V966_D-1) ] Succ: [T:W-1(V968_D-1) ] NODE_DESCR: T:W-1(V968_D-1) Preds: [T:W-1(V967_D-1) ] Succ: [T:W-1(V969_D-1) ] NODE_DESCR: T:W-1(V969_D-1) Preds: [T:W-1(V968_D-1) ] Succ: [C:W-1(V970_D-1) ] NODE_DESCR: C:W-1(V970_D-1) Preds: [T:W-1(V969_D-1) ] Succ: [T:W-1(V971_D-1) ] NODE_DESCR: T:W-1(V971_D-1) Preds: [C:W-1(V970_D-1) ] Succ: [T:W-1(V972_D-1) ] NODE_DESCR: T:W-1(V972_D-1) Preds: [T:W-1(V971_D-1) ] Succ: [T:W-1(V973_D-1) ] NODE_DESCR: T:W-1(V973_D-1) Preds: [T:W-1(V972_D-1) ] Succ: [C:W-1(V974_D-1) ] NODE_DESCR: C:W-1(V974_D-1) Preds: [T:W-1(V973_D-1) ] Succ: [C:W-1(V975_D-1) ] NODE_DESCR: C:W-1(V975_D-1) Preds: [C:W-1(V974_D-1) ] Succ: [A:W-1(V976_D-1) ] NODE_DESCR: A:W-1(V976_D-1) Preds: [C:W-1(V975_D-1) ] Succ: [A:W-1(V977_D-1) ] NODE_DESCR: A:W-1(V977_D-1) Preds: [A:W-1(V976_D-1) ] Succ: [G:W-1(V978_D-1) ] NODE_DESCR: G:W-1(V978_D-1) Preds: [A:W-1(V977_D-1) ] Succ: [T:W-1(V979_D-1) ] NODE_DESCR: T:W-1(V979_D-1) Preds: [G:W-1(V978_D-1) ] Succ: [A:W-1(V980_D-1) ] NODE_DESCR: A:W-1(V980_D-1) Preds: [T:W-1(V979_D-1) ] Succ: [G:W-1(V451_D-1) ] ORIGINAL GRAPH NODE: GGCCACACGATGGCTTATCACGTC with ID: 380 ORIGINAL GRAPH NODE: GCCACACGATGGCTTATCACGTCC with ID: 381 ORIGINAL GRAPH NODE: CCACACGATGGCTTATCACGTCCA with ID: 382 ORIGINAL GRAPH NODE: CACACGATGGCTTATCACGTCCAC with ID: 383 ORIGINAL GRAPH NODE: ACACGATGGCTTATCACGTCCACA with ID: 384 ORIGINAL GRAPH NODE: CACGATGGCTTATCACGTCCACAT with ID: 385 ORIGINAL GRAPH NODE: ACGATGGCTTATCACGTCCACATT with ID: 386 ORIGINAL GRAPH NODE: CGATGGCTTATCACGTCCACATTT with ID: 387 ORIGINAL GRAPH NODE: GATGGCTTATCACGTCCACATTTC with ID: 388 ORIGINAL GRAPH NODE: ATGGCTTATCACGTCCACATTTCT with ID: 389 ORIGINAL GRAPH NODE: TGGCTTATCACGTCCACATTTCTA with ID: 390 ORIGINAL GRAPH NODE: GGCTTATCACGTCCACATTTCTAC with ID: 391 ORIGINAL GRAPH NODE: GCTTATCACGTCCACATTTCTACT with ID: 392 ORIGINAL GRAPH NODE: CTTATCACGTCCACATTTCTACTG with ID: 393 ORIGINAL GRAPH NODE: TTATCACGTCCACATTTCTACTGG with ID: 394 ORIGINAL GRAPH NODE: TATCACGTCCACATTTCTACTGGC with ID: 395 ORIGINAL GRAPH NODE: ATCACGTCCACATTTCTACTGGCT with ID: 396 ORIGINAL GRAPH NODE: TCACGTCCACATTTCTACTGGCTA with ID: 397 ORIGINAL GRAPH NODE: CACGTCCACATTTCTACTGGCTAC with ID: 398 ORIGINAL GRAPH NODE: ACGTCCACATTTCTACTGGCTACA with ID: 399 ORIGINAL GRAPH NODE: CGTCCACATTTCTACTGGCTACAA with ID: 400 ORIGINAL GRAPH NODE: GTCCACATTTCTACTGGCTACAAA with ID: 401 ORIGINAL GRAPH NODE: TCCACATTTCTACTGGCTACAAAC with ID: 402 ORIGINAL GRAPH NODE: CCACATTTCTACTGGCTACAAACA with ID: 403 ORIGINAL GRAPH NODE: CACATTTCTACTGGCTACAAACAG with ID: 404 ORIGINAL GRAPH NODE: ACATTTCTACTGGCTACAAACAGA with ID: 405 ORIGINAL GRAPH NODE: CATTTCTACTGGCTACAAACAGAC with ID: 406 ORIGINAL GRAPH NODE: ATTTCTACTGGCTACAAACAGACT with ID: 407 ORIGINAL GRAPH NODE: TTTCTACTGGCTACAAACAGACTT with ID: 408 ORIGINAL GRAPH NODE: TTCTACTGGCTACAAACAGACTTC with ID: 409 ORIGINAL GRAPH NODE: TCTACTGGCTACAAACAGACTTCC with ID: 410 ORIGINAL GRAPH NODE: CTACTGGCTACAAACAGACTTCCT with ID: 411 ORIGINAL GRAPH NODE: TACTGGCTACAAACAGACTTCCTC with ID: 412 ORIGINAL GRAPH NODE: ACTGGCTACAAACAGACTTCCTCA with ID: 413 ORIGINAL GRAPH NODE: CTGGCTACAAACAGACTTCCTCAA with ID: 414 ORIGINAL GRAPH NODE: TGGCTACAAACAGACTTCCTCAAG with ID: 415 ORIGINAL GRAPH NODE: GGCTACAAACAGACTTCCTCAAGC with ID: 416 ORIGINAL GRAPH NODE: GCTACAAACAGACTTCCTCAAGCC with ID: 417 ORIGINAL GRAPH NODE: CTACAAACAGACTTCCTCAAGCCT with ID: 418 ORIGINAL GRAPH NODE: TACAAACAGACTTCCTCAAGCCTC with ID: 419 ORIGINAL GRAPH NODE: ACAAACAGACTTCCTCAAGCCTCA with ID: 420 ORIGINAL GRAPH NODE: CAAACAGACTTCCTCAAGCCTCAT with ID: 421 ORIGINAL GRAPH NODE: AAACAGACTTCCTCAAGCCTCATC with ID: 422 ORIGINAL GRAPH NODE: AACAGACTTCCTCAAGCCTCATCA with ID: 423 ORIGINAL GRAPH NODE: ACAGACTTCCTCAAGCCTCATCAG with ID: 424 ORIGINAL GRAPH NODE: CAGACTTCCTCAAGCCTCATCAGC with ID: 425 ORIGINAL GRAPH NODE: AGACTTCCTCAAGCCTCATCAGCA with ID: 426 ORIGINAL GRAPH NODE: GACTTCCTCAAGCCTCATCAGCAA with ID: 427 ORIGINAL GRAPH NODE: ACTTCCTCAAGCCTCATCAGCAAG with ID: 428 ORIGINAL GRAPH NODE: CTTCCTCAAGCCTCATCAGCAAGA with ID: 429 ORIGINAL GRAPH NODE: TTCCTCAAGCCTCATCAGCAAGAA with ID: 430 ORIGINAL GRAPH NODE: TCCTCAAGCCTCATCAGCAAGAAG with ID: 431 ORIGINAL GRAPH NODE: CCTCAAGCCTCATCAGCAAGAAGA with ID: 432 ORIGINAL GRAPH NODE: CTCAAGCCTCATCAGCAAGAAGAA with ID: 433 ORIGINAL GRAPH NODE: TCAAGCCTCATCAGCAAGAAGAAA with ID: 434 ORIGINAL GRAPH NODE: CAAGCCTCATCAGCAAGAAGAAAT with ID: 435 ORIGINAL GRAPH NODE: AAGCCTCATCAGCAAGAAGAAATC with ID: 436 ORIGINAL GRAPH NODE: AGCCTCATCAGCAAGAAGAAATCT with ID: 437 ORIGINAL GRAPH NODE: GCCTCATCAGCAAGAAGAAATCTT with ID: 438 ORIGINAL GRAPH NODE: CCTCATCAGCAAGAAGAAATCTTT with ID: 439 ORIGINAL GRAPH NODE: CTCATCAGCAAGAAGAAATCTTTC with ID: 440 ORIGINAL GRAPH NODE: TCATCAGCAAGAAGAAATCTTTCT with ID: 441 ORIGINAL GRAPH NODE: CATCAGCAAGAAGAAATCTTTCTT with ID: 442 ORIGINAL GRAPH NODE: ATCAGCAAGAAGAAATCTTTCTTT with ID: 443 ORIGINAL GRAPH NODE: TCAGCAAGAAGAAATCTTTCTTTC with ID: 444 ORIGINAL GRAPH NODE: CAGCAAGAAGAAATCTTTCTTTCC with ID: 445 ORIGINAL GRAPH NODE: AGCAAGAAGAAATCTTTCTTTCCA with ID: 446 ORIGINAL GRAPH NODE: GCAAGAAGAAATCTTTCTTTCCAA with ID: 447 ORIGINAL GRAPH NODE: CAAGAAGAAATCTTTCTTTCCAAG with ID: 448 ORIGINAL GRAPH NODE: AAGAAGAAATCTTTCTTTCCAAGT with ID: 449 ORIGINAL GRAPH NODE: AGAAGAAATCTTTCTTTCCAAGTA with ID: 450 ORIGINAL GRAPH NODE: GAAGAAATCTTTCTTTCCAAGTAG with ID: 451 ORIGINAL GRAPH NODE: AAGAAATCTTTCTTTCCAAGTAGT with ID: 452 ORIGINAL GRAPH NODE: AGAAATCTTTCTTTCCAAGTAGTG with ID: 453 ORIGINAL GRAPH NODE: GAAATCTTTCTTTCCAAGTAGTGT with ID: 454 ORIGINAL GRAPH NODE: AAATCTTTCTTTCCAAGTAGTGTC with ID: 455 ORIGINAL GRAPH NODE: AATCTTTCTTTCCAAGTAGTGTCT with ID: 456 ORIGINAL GRAPH NODE: ATCTTTCTTTCCAAGTAGTGTCTT with ID: 457 ORIGINAL GRAPH NODE: TCTTTCTTTCCAAGTAGTGTCTTA with ID: 458 ORIGINAL GRAPH NODE: CTTTCTTTCCAAGTAGTGTCTTAA with ID: 459 ORIGINAL GRAPH NODE: TTTCTTTCCAAGTAGTGTCTTAAC with ID: 460 ORIGINAL GRAPH NODE: TTCTTTCCAAGTAGTGTCTTAACT with ID: 461 ORIGINAL GRAPH NODE: TCTTTCCAAGTAGTGTCTTAACTC with ID: 462 ORIGINAL GRAPH NODE: CTTTCCAAGTAGTGTCTTAACTCA with ID: 463 ORIGINAL GRAPH NODE: TTTCCAAGTAGTGTCTTAACTCAG with ID: 464 ORIGINAL GRAPH NODE: TTCCAAGTAGTGTCTTAACTCAGG with ID: 465 ORIGINAL GRAPH NODE: TCCAAGTAGTGTCTTAACTCAGGA with ID: 466 ORIGINAL GRAPH NODE: CCAAGTAGTGTCTTAACTCAGGAG with ID: 467 ORIGINAL GRAPH NODE: CAAGTAGTGTCTTAACTCAGGAGA with ID: 468 ORIGINAL GRAPH NODE: AAGTAGTGTCTTAACTCAGGAGAT with ID: 469 ORIGINAL GRAPH NODE: AGTAGTGTCTTAACTCAGGAGATC with ID: 470 ORIGINAL GRAPH NODE: GTAGTGTCTTAACTCAGGAGATCA with ID: 471 ORIGINAL GRAPH NODE: TAGTGTCTTAACTCAGGAGATCAT with ID: 472 ORIGINAL GRAPH NODE: AGTGTCTTAACTCAGGAGATCATG with ID: 473 ORIGINAL GRAPH NODE: GTGTCTTAACTCAGGAGATCATGG with ID: 474 ORIGINAL GRAPH NODE: TGTCTTAACTCAGGAGATCATGGT with ID: 475 ORIGINAL GRAPH NODE: GTCTTAACTCAGGAGATCATGGTA with ID: 476 ORIGINAL GRAPH NODE: TCTTAACTCAGGAGATCATGGTAG with ID: 477 ORIGINAL GRAPH NODE: CTTAACTCAGGAGATCATGGTAGG with ID: 478 ORIGINAL GRAPH NODE: TTAACTCAGGAGATCATGGTAGGG with ID: 479 ORIGINAL GRAPH NODE: TAACTCAGGAGATCATGGTAGGGA with ID: 480 ORIGINAL GRAPH NODE: AACTCAGGAGATCATGGTAGGGAA with ID: 481 ORIGINAL GRAPH NODE: ACTCAGGAGATCATGGTAGGGAAG with ID: 482 ORIGINAL GRAPH NODE: CTCAGGAGATCATGGTAGGGAAGG with ID: 483 ORIGINAL GRAPH NODE: TCAGGAGATCATGGTAGGGAAGGG with ID: 484 ORIGINAL GRAPH NODE: CAGGAGATCATGGTAGGGAAGGGG with ID: 485 ORIGINAL GRAPH NODE: AGGAGATCATGGTAGGGAAGGGGT with ID: 486 ORIGINAL GRAPH NODE: GGAGATCATGGTAGGGAAGGGGTC with ID: 487 ORIGINAL GRAPH NODE: GAGATCATGGTAGGGAAGGGGTCA with ID: 488 ORIGINAL GRAPH NODE: AGATCATGGTAGGGAAGGGGTCAG with ID: 489 ORIGINAL GRAPH NODE: GATCATGGTAGGGAAGGGGTCAGG with ID: 490 ORIGINAL GRAPH NODE: ATCATGGTAGGGAAGGGGTCAGGC with ID: 491 ORIGINAL GRAPH NODE: TCATGGTAGGGAAGGGGTCAGGCC with ID: 492 ORIGINAL GRAPH NODE: CATGGTAGGGAAGGGGTCAGGCCA with ID: 493 ORIGINAL GRAPH NODE: ATGGTAGGGAAGGGGTCAGGCCAC with ID: 494 ORIGINAL GRAPH NODE: TGGTAGGGAAGGGGTCAGGCCACT with ID: 495 ORIGINAL GRAPH NODE: GGTAGGGAAGGGGTCAGGCCACTT with ID: 496 ORIGINAL GRAPH NODE: GTAGGGAAGGGGTCAGGCCACTTC with ID: 497 ORIGINAL GRAPH NODE: TAGGGAAGGGGTCAGGCCACTTCA with ID: 498 ORIGINAL GRAPH NODE: AGGGAAGGGGTCAGGCCACTTCAC with ID: 499 ORIGINAL GRAPH NODE: GGGAAGGGGTCAGGCCACTTCACA with ID: 500 ORIGINAL GRAPH NODE: GGAAGGGGTCAGGCCACTTCACAA with ID: 501 ORIGINAL GRAPH NODE: GAAGGGGTCAGGCCACTTCACAAG with ID: 502 ORIGINAL GRAPH NODE: AAGGGGTCAGGCCACTTCACAAGG with ID: 503 ORIGINAL GRAPH NODE: AGGGGTCAGGCCACTTCACAAGGA with ID: 504 ORIGINAL GRAPH NODE: GGGGTCAGGCCACTTCACAAGGAG with ID: 505 ORIGINAL GRAPH NODE: GGGTCAGGCCACTTCACAAGGAGC with ID: 506 ORIGINAL GRAPH NODE: GGTCAGGCCACTTCACAAGGAGCA with ID: 507 ORIGINAL GRAPH NODE: GTCAGGCCACTTCACAAGGAGCAG with ID: 508 ORIGINAL GRAPH NODE: TCAGGCCACTTCACAAGGAGCAGA with ID: 509 ORIGINAL GRAPH NODE: CAGGCCACTTCACAAGGAGCAGAG with ID: 510 ORIGINAL GRAPH NODE: AGGCCACTTCACAAGGAGCAGAGT with ID: 511 ORIGINAL GRAPH NODE: GGCCACTTCACAAGGAGCAGAGTT with ID: 512 ORIGINAL GRAPH NODE: GCCACTTCACAAGGAGCAGAGTTA with ID: 513 ORIGINAL GRAPH NODE: CCACTTCACAAGGAGCAGAGTTAG with ID: 514 ORIGINAL GRAPH NODE: CACTTCACAAGGAGCAGAGTTAGG with ID: 515 ORIGINAL GRAPH NODE: ACTTCACAAGGAGCAGAGTTAGGA with ID: 516 ORIGINAL GRAPH NODE: CTTCACAAGGAGCAGAGTTAGGAA with ID: 517 ORIGINAL GRAPH NODE: TTCACAAGGAGCAGAGTTAGGAAG with ID: 518 ORIGINAL GRAPH NODE: TCACAAGGAGCAGAGTTAGGAAGC with ID: 519 ORIGINAL GRAPH NODE: CACAAGGAGCAGAGTTAGGAAGCT with ID: 520 ORIGINAL GRAPH NODE: ACAAGGAGCAGAGTTAGGAAGCTC with ID: 521 ORIGINAL GRAPH NODE: CAAGGAGCAGAGTTAGGAAGCTCC with ID: 522 ORIGINAL GRAPH NODE: AAGGAGCAGAGTTAGGAAGCTCCC with ID: 523 ORIGINAL GRAPH NODE: AGGAGCAGAGTTAGGAAGCTCCCT with ID: 524 ORIGINAL GRAPH NODE: GGAGCAGAGTTAGGAAGCTCCCTG with ID: 525 ORIGINAL GRAPH NODE: GAGCAGAGTTAGGAAGCTCCCTGA with ID: 526 ORIGINAL GRAPH NODE: AGCAGAGTTAGGAAGCTCCCTGAG with ID: 527 ORIGINAL GRAPH NODE: GCAGAGTTAGGAAGCTCCCTGAGC with ID: 528 ORIGINAL GRAPH NODE: CAGAGTTAGGAAGCTCCCTGAGCA with ID: 529 ORIGINAL GRAPH NODE: AGAGTTAGGAAGCTCCCTGAGCAC with ID: 530 ORIGINAL GRAPH NODE: GAGTTAGGAAGCTCCCTGAGCACT with ID: 531 ORIGINAL GRAPH NODE: AGTTAGGAAGCTCCCTGAGCACTC with ID: 532 ORIGINAL GRAPH NODE: GTTAGGAAGCTCCCTGAGCACTCT with ID: 533 ORIGINAL GRAPH NODE: TTAGGAAGCTCCCTGAGCACTCTG with ID: 534 ORIGINAL GRAPH NODE: TAGGAAGCTCCCTGAGCACTCTGA with ID: 535 ORIGINAL GRAPH NODE: AGGAAGCTCCCTGAGCACTCTGAA with ID: 536 ORIGINAL GRAPH NODE: GGAAGCTCCCTGAGCACTCTGAAC with ID: 537 ORIGINAL GRAPH NODE: GAAGCTCCCTGAGCACTCTGAACC with ID: 538 ORIGINAL GRAPH NODE: AAGCTCCCTGAGCACTCTGAACCC with ID: 539 ORIGINAL GRAPH NODE: AGCTCCCTGAGCACTCTGAACCCT with ID: 540 ORIGINAL GRAPH NODE: GCTCCCTGAGCACTCTGAACCCTG with ID: 541 ORIGINAL GRAPH NODE: CTCCCTGAGCACTCTGAACCCTGT with ID: 542 ORIGINAL GRAPH NODE: TCCCTGAGCACTCTGAACCCTGTG with ID: 543 ORIGINAL GRAPH NODE: CCCTGAGCACTCTGAACCCTGTGA with ID: 544 ORIGINAL GRAPH NODE: CCTGAGCACTCTGAACCCTGTGAG with ID: 545 ORIGINAL GRAPH NODE: CTGAGCACTCTGAACCCTGTGAGG with ID: 546 ORIGINAL GRAPH NODE: TGAGCACTCTGAACCCTGTGAGGC with ID: 547 ORIGINAL GRAPH NODE: GAGCACTCTGAACCCTGTGAGGCA with ID: 548 ORIGINAL GRAPH NODE: AGCACTCTGAACCCTGTGAGGCAA with ID: 549 ORIGINAL GRAPH NODE: GCACTCTGAACCCTGTGAGGCAAG with ID: 550 ORIGINAL GRAPH NODE: CACTCTGAACCCTGTGAGGCAAGT with ID: 551 ORIGINAL GRAPH NODE: ACTCTGAACCCTGTGAGGCAAGTC with ID: 552 ORIGINAL GRAPH NODE: CTCTGAACCCTGTGAGGCAAGTCC with ID: 553 ORIGINAL GRAPH NODE: TCTGAACCCTGTGAGGCAAGTCCA with ID: 554 ORIGINAL GRAPH NODE: CTGAACCCTGTGAGGCAAGTCCAC with ID: 555 ORIGINAL GRAPH NODE: TGAACCCTGTGAGGCAAGTCCACC with ID: 556 ORIGINAL GRAPH NODE: GAACCCTGTGAGGCAAGTCCACCA with ID: 557 ORIGINAL GRAPH NODE: AACCCTGTGAGGCAAGTCCACCAC with ID: 558 ORIGINAL GRAPH NODE: ACCCTGTGAGGCAAGTCCACCACC with ID: 559 ORIGINAL GRAPH NODE: CCCTGTGAGGCAAGTCCACCACCA with ID: 560 ORIGINAL GRAPH NODE: CCTGTGAGGCAAGTCCACCACCAG with ID: 561 ORIGINAL GRAPH NODE: CTGTGAGGCAAGTCCACCACCAGC with ID: 562 ORIGINAL GRAPH NODE: TGTGAGGCAAGTCCACCACCAGCG with ID: 563 ORIGINAL GRAPH NODE: GTGAGGCAAGTCCACCACCAGCGT with ID: 564 ORIGINAL GRAPH NODE: TGAGGCAAGTCCACCACCAGCGTA with ID: 565 ORIGINAL GRAPH NODE: GAGGCAAGTCCACCACCAGCGTAT with ID: 566 ORIGINAL GRAPH NODE: AGGCAAGTCCACCACCAGCGTATC with ID: 567 ORIGINAL GRAPH NODE: GGCAAGTCCACCACCAGCGTATCT with ID: 568 ORIGINAL GRAPH NODE: GCAAGTCCACCACCAGCGTATCTA with ID: 569 ORIGINAL GRAPH NODE: CAAGTCCACCACCAGCGTATCTAG with ID: 570 ORIGINAL GRAPH NODE: AAGTCCACCACCAGCGTATCTAGA with ID: 571 ORIGINAL GRAPH NODE: AGTCCACCACCAGCGTATCTAGAC with ID: 572 ORIGINAL GRAPH NODE: GTCCACCACCAGCGTATCTAGACC with ID: 573 ORIGINAL GRAPH NODE: TCCACCACCAGCGTATCTAGACCC with ID: 574 ORIGINAL GRAPH NODE: CCACCACCAGCGTATCTAGACCCA with ID: 575 ORIGINAL GRAPH NODE: CACCACCAGCGTATCTAGACCCAG with ID: 576 ORIGINAL GRAPH NODE: ACCACCAGCGTATCTAGACCCAGG with ID: 577 ORIGINAL GRAPH NODE: CCACCAGCGTATCTAGACCCAGGC with ID: 578 ORIGINAL GRAPH NODE: CACCAGCGTATCTAGACCCAGGCC with ID: 579 ORIGINAL GRAPH NODE: ACCAGCGTATCTAGACCCAGGCCA with ID: 580 ORIGINAL GRAPH NODE: CCAGCGTATCTAGACCCAGGCCAT with ID: 581 ORIGINAL GRAPH NODE: CAGCGTATCTAGACCCAGGCCATC with ID: 582 ORIGINAL GRAPH NODE: AGCGTATCTAGACCCAGGCCATCT with ID: 583 ORIGINAL GRAPH NODE: GCGTATCTAGACCCAGGCCATCTA with ID: 584 ORIGINAL GRAPH NODE: CGTATCTAGACCCAGGCCATCTAA with ID: 585 ORIGINAL GRAPH NODE: GTATCTAGACCCAGGCCATCTAAT with ID: 586 ORIGINAL GRAPH NODE: TATCTAGACCCAGGCCATCTAATA with ID: 587 ORIGINAL GRAPH NODE: ATCTAGACCCAGGCCATCTAATAA with ID: 588 ORIGINAL GRAPH NODE: TCTAGACCCAGGCCATCTAATAAA with ID: 589 ORIGINAL GRAPH NODE: CTAGACCCAGGCCATCTAATAAAG with ID: 590 ORIGINAL GRAPH NODE: TAGACCCAGGCCATCTAATAAAGG with ID: 591 ORIGINAL GRAPH NODE: AGACCCAGGCCATCTAATAAAGGA with ID: 592 ORIGINAL GRAPH NODE: GACCCAGGCCATCTAATAAAGGAA with ID: 593 ORIGINAL GRAPH NODE: ACCCAGGCCATCTAATAAAGGAAA with ID: 594 ORIGINAL GRAPH NODE: CCCAGGCCATCTAATAAAGGAAAA with ID: 595 ORIGINAL GRAPH NODE: CCAGGCCATCTAATAAAGGAAAAC with ID: 596 ORIGINAL GRAPH NODE: CAGGCCATCTAATAAAGGAAAACT with ID: 597 ORIGINAL GRAPH NODE: AGGCCATCTAATAAAGGAAAACTG with ID: 598 ORIGINAL GRAPH NODE: GGCCATCTAATAAAGGAAAACTGC with ID: 599 ORIGINAL GRAPH NODE: GCCATCTAATAAAGGAAAACTGCA with ID: 600 ORIGINAL GRAPH NODE: CCATCTAATAAAGGAAAACTGCAT with ID: 601 ORIGINAL GRAPH NODE: CATCTAATAAAGGAAAACTGCATC with ID: 602 ORIGINAL GRAPH NODE: ATCTAATAAAGGAAAACTGCATCT with ID: 603 ORIGINAL GRAPH NODE: TCTAATAAAGGAAAACTGCATCTT with ID: 604 ORIGINAL GRAPH NODE: CTAATAAAGGAAAACTGCATCTTT with ID: 605 ORIGINAL GRAPH NODE: TAATAAAGGAAAACTGCATCTTTG with ID: 606 ORIGINAL GRAPH NODE: AATAAAGGAAAACTGCATCTTTGC with ID: 607 ORIGINAL GRAPH NODE: ATAAAGGAAAACTGCATCTTTGCC with ID: 608 ORIGINAL GRAPH NODE: TAAAGGAAAACTGCATCTTTGCCC with ID: 609 ORIGINAL GRAPH NODE: AAAGGAAAACTGCATCTTTGCCCA with ID: 610 ORIGINAL GRAPH NODE: AAGGAAAACTGCATCTTTGCCCAC with ID: 611 ORIGINAL GRAPH NODE: AGGAAAACTGCATCTTTGCCCACA with ID: 612 ORIGINAL GRAPH NODE: GGAAAACTGCATCTTTGCCCACAT with ID: 613 ORIGINAL GRAPH NODE: GAAAACTGCATCTTTGCCCACATG with ID: 614 ORIGINAL GRAPH NODE: AAAACTGCATCTTTGCCCACATGA with ID: 615 ORIGINAL GRAPH NODE: AAACTGCATCTTTGCCCACATGAT with ID: 616 ORIGINAL GRAPH NODE: AACTGCATCTTTGCCCACATGATG with ID: 617 ORIGINAL GRAPH NODE: ACTGCATCTTTGCCCACATGATGC with ID: 618 ORIGINAL GRAPH NODE: CTGCATCTTTGCCCACATGATGCT with ID: 619 ORIGINAL GRAPH NODE: TGCATCTTTGCCCACATGATGCTT with ID: 620 ORIGINAL GRAPH NODE: GCATCTTTGCCCACATGATGCTTG with ID: 621 ORIGINAL GRAPH NODE: CATCTTTGCCCACATGATGCTTGG with ID: 622 ORIGINAL GRAPH NODE: ATCTTTGCCCACATGATGCTTGGT with ID: 623 ORIGINAL GRAPH NODE: TCTTTGCCCACATGATGCTTGGTT with ID: 624 ORIGINAL GRAPH NODE: CTTTGCCCACATGATGCTTGGTTA with ID: 625 ORIGINAL GRAPH NODE: TTTGCCCACATGATGCTTGGTTAA with ID: 626 ORIGINAL GRAPH NODE: TTGCCCACATGATGCTTGGTTAAG with ID: 627 ORIGINAL GRAPH NODE: TGCCCACATGATGCTTGGTTAAGA with ID: 628 ORIGINAL GRAPH NODE: GCCCACATGATGCTTGGTTAAGAC with ID: 629 ORIGINAL GRAPH NODE: CCCACATGATGCTTGGTTAAGACA with ID: 630 ORIGINAL GRAPH NODE: CCACATGATGCTTGGTTAAGACAA with ID: 631 ORIGINAL GRAPH NODE: CACATGATGCTTGGTTAAGACAAG with ID: 632 ORIGINAL GRAPH NODE: ACATGATGCTTGGTTAAGACAAGG with ID: 633 ORIGINAL GRAPH NODE: CATGATGCTTGGTTAAGACAAGGG with ID: 634 ORIGINAL GRAPH NODE: ATGATGCTTGGTTAAGACAAGGGG with ID: 635 ORIGINAL GRAPH NODE: TGATGCTTGGTTAAGACAAGGGGT with ID: 636 ORIGINAL GRAPH NODE: GATGCTTGGTTAAGACAAGGGGTT with ID: 637 ORIGINAL GRAPH NODE: ATGCTTGGTTAAGACAAGGGGTTA with ID: 638 ORIGINAL GRAPH NODE: TGCTTGGTTAAGACAAGGGGTTAG with ID: 639 ORIGINAL GRAPH NODE: GCTTGGTTAAGACAAGGGGTTAGT with ID: 640 ORIGINAL GRAPH NODE: CTTGGTTAAGACAAGGGGTTAGTG with ID: 641 ORIGINAL GRAPH NODE: TTGGTTAAGACAAGGGGTTAGTGA with ID: 642 ORIGINAL GRAPH NODE: TGGTTAAGACAAGGGGTTAGTGAC with ID: 643 ORIGINAL GRAPH NODE: GGTTAAGACAAGGGGTTAGTGACA with ID: 644 ORIGINAL GRAPH NODE: GTTAAGACAAGGGGTTAGTGACAA with ID: 645 ORIGINAL GRAPH NODE: TTAAGACAAGGGGTTAGTGACAAA with ID: 646 ORIGINAL GRAPH NODE: TAAGACAAGGGGTTAGTGACAAAG with ID: 647 ORIGINAL GRAPH NODE: AAGACAAGGGGTTAGTGACAAAGT with ID: 648 ORIGINAL GRAPH NODE: AGACAAGGGGTTAGTGACAAAGTA with ID: 649 ORIGINAL GRAPH NODE: GACAAGGGGTTAGTGACAAAGTAA with ID: 650 ORIGINAL GRAPH NODE: ACAAGGGGTTAGTGACAAAGTAAA with ID: 651 ORIGINAL GRAPH NODE: CAAGGGGTTAGTGACAAAGTAAAG with ID: 652 ORIGINAL GRAPH NODE: AAGGGGTTAGTGACAAAGTAAAGA with ID: 653 ORIGINAL GRAPH NODE: AGGGGTTAGTGACAAAGTAAAGAG with ID: 654 ORIGINAL GRAPH NODE: GGGGTTAGTGACAAAGTAAAGAGG with ID: 655 ORIGINAL GRAPH NODE: GGGTTAGTGACAAAGTAAAGAGGA with ID: 656 ORIGINAL GRAPH NODE: GGTTAGTGACAAAGTAAAGAGGAT with ID: 657 ORIGINAL GRAPH NODE: GTTAGTGACAAAGTAAAGAGGATG with ID: 658 ORIGINAL GRAPH NODE: TTAGTGACAAAGTAAAGAGGATGA with ID: 659 ORIGINAL GRAPH NODE: TAGTGACAAAGTAAAGAGGATGAC with ID: 660 ORIGINAL GRAPH NODE: AGTGACAAAGTAAAGAGGATGACA with ID: 661 ORIGINAL GRAPH NODE: GTGACAAAGTAAAGAGGATGACAG with ID: 662 ORIGINAL GRAPH NODE: TGACAAAGTAAAGAGGATGACAGA with ID: 663 ORIGINAL GRAPH NODE: GACAAAGTAAAGAGGATGACAGAC with ID: 664 ORIGINAL GRAPH NODE: ACAAAGTAAAGAGGATGACAGACT with ID: 665 ORIGINAL GRAPH NODE: CAAAGTAAAGAGGATGACAGACTC with ID: 666 ORIGINAL GRAPH NODE: AAAGTAAAGAGGATGACAGACTCT with ID: 667 ORIGINAL GRAPH NODE: AAGTAAAGAGGATGACAGACTCTC with ID: 668 ORIGINAL GRAPH NODE: AGTAAAGAGGATGACAGACTCTCT with ID: 669 ORIGINAL GRAPH NODE: GTAAAGAGGATGACAGACTCTCTA with ID: 670 ORIGINAL GRAPH NODE: TAAAGAGGATGACAGACTCTCTAA with ID: 671 ORIGINAL GRAPH NODE: AAAGAGGATGACAGACTCTCTAAG with ID: 672 ORIGINAL GRAPH NODE: AAGAGGATGACAGACTCTCTAAGG with ID: 673 ORIGINAL GRAPH NODE: AGAGGATGACAGACTCTCTAAGGG with ID: 674 ORIGINAL GRAPH NODE: GAGGATGACAGACTCTCTAAGGGA with ID: 675 ORIGINAL GRAPH NODE: AGGATGACAGACTCTCTAAGGGAC with ID: 676 ORIGINAL GRAPH NODE: GGATGACAGACTCTCTAAGGGACA with ID: 677 ORIGINAL GRAPH NODE: GATGACAGACTCTCTAAGGGACAT with ID: 678 ORIGINAL GRAPH NODE: ATGACAGACTCTCTAAGGGACATA with ID: 679 ORIGINAL GRAPH NODE: TGACAGACTCTCTAAGGGACATAT with ID: 680 ORIGINAL GRAPH NODE: GACAGACTCTCTAAGGGACATATG with ID: 681 ORIGINAL GRAPH NODE: ACAGACTCTCTAAGGGACATATGG with ID: 682 ORIGINAL GRAPH NODE: CAGACTCTCTAAGGGACATATGGG with ID: 683 ORIGINAL GRAPH NODE: AGACTCTCTAAGGGACATATGGGA with ID: 684 ORIGINAL GRAPH NODE: GACTCTCTAAGGGACATATGGGAG with ID: 685 ORIGINAL GRAPH NODE: ACTCTCTAAGGGACATATGGGAGC with ID: 686 ORIGINAL GRAPH NODE: CTCTCTAAGGGACATATGGGAGCT with ID: 687 ORIGINAL GRAPH NODE: TCTCTAAGGGACATATGGGAGCTA with ID: 688 ORIGINAL GRAPH NODE: CTCTAAGGGACATATGGGAGCTAC with ID: 689 ORIGINAL GRAPH NODE: TCTAAGGGACATATGGGAGCTACA with ID: 690 ORIGINAL GRAPH NODE: CTAAGGGACATATGGGAGCTACAT with ID: 691 ORIGINAL GRAPH NODE: TAAGGGACATATGGGAGCTACATA with ID: 692 ORIGINAL GRAPH NODE: AAGGGACATATGGGAGCTACATAG with ID: 693 ORIGINAL GRAPH NODE: AGGGACATATGGGAGCTACATAGC with ID: 694 ORIGINAL GRAPH NODE: GGGACATATGGGAGCTACATAGCC with ID: 695 ORIGINAL GRAPH NODE: GGACATATGGGAGCTACATAGCCA with ID: 696 ORIGINAL GRAPH NODE: GACATATGGGAGCTACATAGCCAG with ID: 697 ORIGINAL GRAPH NODE: ACATATGGGAGCTACATAGCCAGC with ID: 698 ORIGINAL GRAPH NODE: CATATGGGAGCTACATAGCCAGCC with ID: 699 ORIGINAL GRAPH NODE: ATATGGGAGCTACATAGCCAGCCC with ID: 700 ORIGINAL GRAPH NODE: TATGGGAGCTACATAGCCAGCCCC with ID: 701 ORIGINAL GRAPH NODE: ATGGGAGCTACATAGCCAGCCCCG with ID: 702 ORIGINAL GRAPH NODE: TGGGAGCTACATAGCCAGCCCCGT with ID: 703 ORIGINAL GRAPH NODE: GGGAGCTACATAGCCAGCCCCGTG with ID: 704 ORIGINAL GRAPH NODE: GGAGCTACATAGCCAGCCCCGTGG with ID: 705 ORIGINAL GRAPH NODE: GAGCTACATAGCCAGCCCCGTGGA with ID: 706 ORIGINAL GRAPH NODE: AGCTACATAGCCAGCCCCGTGGAG with ID: 707 ORIGINAL GRAPH NODE: GCTACATAGCCAGCCCCGTGGAGG with ID: 708 ORIGINAL GRAPH NODE: CTACATAGCCAGCCCCGTGGAGGG with ID: 709 ORIGINAL GRAPH NODE: TACATAGCCAGCCCCGTGGAGGGA with ID: 710 ORIGINAL GRAPH NODE: ACATAGCCAGCCCCGTGGAGGGAG with ID: 711 ORIGINAL GRAPH NODE: CATAGCCAGCCCCGTGGAGGGAGC with ID: 712 ORIGINAL GRAPH NODE: ATAGCCAGCCCCGTGGAGGGAGCC with ID: 713 ORIGINAL GRAPH NODE: TAGCCAGCCCCGTGGAGGGAGCCA with ID: 714 ORIGINAL GRAPH NODE: AGCCAGCCCCGTGGAGGGAGCCAC with ID: 715 ORIGINAL GRAPH NODE: GCCAGCCCCGTGGAGGGAGCCACC with ID: 716 ORIGINAL GRAPH NODE: CCAGCCCCGTGGAGGGAGCCACCA with ID: 717 ORIGINAL GRAPH NODE: CAGCCCCGTGGAGGGAGCCACCAG with ID: 718 ORIGINAL GRAPH NODE: AGCCCCGTGGAGGGAGCCACCAGC with ID: 719 ORIGINAL GRAPH NODE: GCCCCGTGGAGGGAGCCACCAGCC with ID: 720 ORIGINAL GRAPH NODE: CCCCGTGGAGGGAGCCACCAGCCA with ID: 721 ORIGINAL GRAPH NODE: CCCGTGGAGGGAGCCACCAGCCAC with ID: 722 ORIGINAL GRAPH NODE: CCGTGGAGGGAGCCACCAGCCACA with ID: 723 ORIGINAL GRAPH NODE: CGTGGAGGGAGCCACCAGCCACAG with ID: 724 ORIGINAL GRAPH NODE: GTGGAGGGAGCCACCAGCCACAGG with ID: 725 ORIGINAL GRAPH NODE: TGGAGGGAGCCACCAGCCACAGGT with ID: 726 ORIGINAL GRAPH NODE: GGAGGGAGCCACCAGCCACAGGTA with ID: 727 ORIGINAL GRAPH NODE: GAGGGAGCCACCAGCCACAGGTAC with ID: 728 ORIGINAL GRAPH NODE: AGGGAGCCACCAGCCACAGGTACC with ID: 729 ORIGINAL GRAPH NODE: GGGAGCCACCAGCCACAGGTACCT with ID: 730 ORIGINAL GRAPH NODE: GGAGCCACCAGCCACAGGTACCTG with ID: 731 ORIGINAL GRAPH NODE: GAGCCACCAGCCACAGGTACCTGA with ID: 732 ORIGINAL GRAPH NODE: AGCCACCAGCCACAGGTACCTGAT with ID: 733 ORIGINAL GRAPH NODE: GCCACCAGCCACAGGTACCTGATG with ID: 734 ORIGINAL GRAPH NODE: CCACCAGCCACAGGTACCTGATGG with ID: 735 ORIGINAL GRAPH NODE: CACCAGCCACAGGTACCTGATGGA with ID: 736 ORIGINAL GRAPH NODE: ACCAGCCACAGGTACCTGATGGAA with ID: 737 ORIGINAL GRAPH NODE: CCAGCCACAGGTACCTGATGGAAA with ID: 738 ORIGINAL GRAPH NODE: CAGCCACAGGTACCTGATGGAAAT with ID: 739 ORIGINAL GRAPH NODE: AGCCACAGGTACCTGATGGAAATG with ID: 740 ORIGINAL GRAPH NODE: GCCACAGGTACCTGATGGAAATGC with ID: 741 ORIGINAL GRAPH NODE: CCACAGGTACCTGATGGAAATGCC with ID: 742 ORIGINAL GRAPH NODE: CACAGGTACCTGATGGAAATGCCG with ID: 743 ORIGINAL GRAPH NODE: ACAGGTACCTGATGGAAATGCCGG with ID: 744 ORIGINAL GRAPH NODE: CAGGTACCTGATGGAAATGCCGGC with ID: 745 ORIGINAL GRAPH NODE: AGGTACCTGATGGAAATGCCGGCT with ID: 746 ORIGINAL GRAPH NODE: GGTACCTGATGGAAATGCCGGCTC with ID: 747 ORIGINAL GRAPH NODE: GTACCTGATGGAAATGCCGGCTCA with ID: 748 ORIGINAL GRAPH NODE: TACCTGATGGAAATGCCGGCTCAC with ID: 749 ORIGINAL GRAPH NODE: ACCTGATGGAAATGCCGGCTCACT with ID: 750 ORIGINAL GRAPH NODE: CCTGATGGAAATGCCGGCTCACTT with ID: 751 ORIGINAL GRAPH NODE: CTGATGGAAATGCCGGCTCACTTC with ID: 752 ORIGINAL GRAPH NODE: TGATGGAAATGCCGGCTCACTTCC with ID: 753 ORIGINAL GRAPH NODE: GATGGAAATGCCGGCTCACTTCCT with ID: 754 ORIGINAL GRAPH NODE: ATGGAAATGCCGGCTCACTTCCTG with ID: 755 ORIGINAL GRAPH NODE: TGGAAATGCCGGCTCACTTCCTGT with ID: 756 ORIGINAL GRAPH NODE: GGAAATGCCGGCTCACTTCCTGTG with ID: 757 ORIGINAL GRAPH NODE: GAAATGCCGGCTCACTTCCTGTGA with ID: 758 ORIGINAL GRAPH NODE: GCTAGGGGAAATAGGGGAGCTCCA with ID: 786 ORIGINAL GRAPH NODE: CTAGGGGAAATAGGGGAGCTCCAA with ID: 787 ORIGINAL GRAPH NODE: TAGGGGAAATAGGGGAGCTCCAAA with ID: 788 ORIGINAL GRAPH NODE: AGGGGAAATAGGGGAGCTCCAAAC with ID: 789 ORIGINAL GRAPH NODE: GGGGAAATAGGGGAGCTCCAAACC with ID: 790 ORIGINAL GRAPH NODE: GGGAAATAGGGGAGCTCCAAACCC with ID: 791 ORIGINAL GRAPH NODE: GGAAATAGGGGAGCTCCAAACCCA with ID: 792 ORIGINAL GRAPH NODE: GAAATAGGGGAGCTCCAAACCCAG with ID: 793 ORIGINAL GRAPH NODE: AAATAGGGGAGCTCCAAACCCAGC with ID: 794 ORIGINAL GRAPH NODE: AATAGGGGAGCTCCAAACCCAGCC with ID: 795 ORIGINAL GRAPH NODE: ATAGGGGAGCTCCAAACCCAGCCC with ID: 796 ORIGINAL GRAPH NODE: TAGGGGAGCTCCAAACCCAGCCCC with ID: 797 ORIGINAL GRAPH NODE: AGGGGAGCTCCAAACCCAGCCCCG with ID: 798 ORIGINAL GRAPH NODE: GGGGAGCTCCAAACCCAGCCCCGT with ID: 799 ORIGINAL GRAPH NODE: GGGAGCTCCAAACCCAGCCCCGTG with ID: 800 ORIGINAL GRAPH NODE: GGAGCTCCAAACCCAGCCCCGTGG with ID: 801 ORIGINAL GRAPH NODE: GAGCTCCAAACCCAGCCCCGTGGA with ID: 802 ORIGINAL GRAPH NODE: AGCTCCAAACCCAGCCCCGTGGAG with ID: 803 ORIGINAL GRAPH NODE: GCTCCAAACCCAGCCCCGTGGAGG with ID: 804 ORIGINAL GRAPH NODE: CTCCAAACCCAGCCCCGTGGAGGG with ID: 805 ORIGINAL GRAPH NODE: TCCAAACCCAGCCCCGTGGAGGGA with ID: 806 ORIGINAL GRAPH NODE: CCAAACCCAGCCCCGTGGAGGGAG with ID: 807 ORIGINAL GRAPH NODE: CAAACCCAGCCCCGTGGAGGGAGC with ID: 808 ORIGINAL GRAPH NODE: AAACCCAGCCCCGTGGAGGGAGCC with ID: 809 ORIGINAL GRAPH NODE: AACCCAGCCCCGTGGAGGGAGCCA with ID: 810 ORIGINAL GRAPH NODE: ACCCAGCCCCGTGGAGGGAGCCAC with ID: 811 ORIGINAL GRAPH NODE: CCCAGCCCCGTGGAGGGAGCCACC with ID: 812 ORIGINAL GRAPH NODE: GGAGCAGAGTTAGGAAGCTCCCTC with ID: 813 ORIGINAL GRAPH NODE: GAGCAGAGTTAGGAAGCTCCCTCA with ID: 814 ORIGINAL GRAPH NODE: AGCAGAGTTAGGAAGCTCCCTCAG with ID: 815 ORIGINAL GRAPH NODE: GCAGAGTTAGGAAGCTCCCTCAGC with ID: 816 ORIGINAL GRAPH NODE: CAGAGTTAGGAAGCTCCCTCAGCA with ID: 817 ORIGINAL GRAPH NODE: AGAGTTAGGAAGCTCCCTCAGCAC with ID: 818 ORIGINAL GRAPH NODE: GAGTTAGGAAGCTCCCTCAGCACT with ID: 819 ORIGINAL GRAPH NODE: AGTTAGGAAGCTCCCTCAGCACTC with ID: 820 ORIGINAL GRAPH NODE: GTTAGGAAGCTCCCTCAGCACTCT with ID: 821 ORIGINAL GRAPH NODE: TTAGGAAGCTCCCTCAGCACTCTG with ID: 822 ORIGINAL GRAPH NODE: TAGGAAGCTCCCTCAGCACTCTGA with ID: 823 ORIGINAL GRAPH NODE: AGGAAGCTCCCTCAGCACTCTGAA with ID: 824 ORIGINAL GRAPH NODE: GGAAGCTCCCTCAGCACTCTGAAC with ID: 825 ORIGINAL GRAPH NODE: GAAGCTCCCTCAGCACTCTGAACC with ID: 826 ORIGINAL GRAPH NODE: AAGCTCCCTCAGCACTCTGAACCC with ID: 827 ORIGINAL GRAPH NODE: AGCTCCCTCAGCACTCTGAACCCT with ID: 828 ORIGINAL GRAPH NODE: GCTCCCTCAGCACTCTGAACCCTG with ID: 829 ORIGINAL GRAPH NODE: CTCCCTCAGCACTCTGAACCCTGT with ID: 830 ORIGINAL GRAPH NODE: TCCCTCAGCACTCTGAACCCTGTG with ID: 831 ORIGINAL GRAPH NODE: CCCTCAGCACTCTGAACCCTGTGA with ID: 832 ORIGINAL GRAPH NODE: CCTCAGCACTCTGAACCCTGTGAG with ID: 833 ORIGINAL GRAPH NODE: CTCAGCACTCTGAACCCTGTGAGG with ID: 834 ORIGINAL GRAPH NODE: TCAGCACTCTGAACCCTGTGAGGC with ID: 835 ORIGINAL GRAPH NODE: CAGCACTCTGAACCCTGTGAGGCA with ID: 836 ORIGINAL GRAPH NODE: GGCTACAAACAGACTTCCTCAAGG with ID: 885 ORIGINAL GRAPH NODE: GCTACAAACAGACTTCCTCAAGGC with ID: 886 ORIGINAL GRAPH NODE: CTACAAACAGACTTCCTCAAGGCT with ID: 887 ORIGINAL GRAPH NODE: TACAAACAGACTTCCTCAAGGCTC with ID: 888 ORIGINAL GRAPH NODE: ACAAACAGACTTCCTCAAGGCTCA with ID: 889 ORIGINAL GRAPH NODE: CAAACAGACTTCCTCAAGGCTCAT with ID: 890 ORIGINAL GRAPH NODE: AAACAGACTTCCTCAAGGCTCATC with ID: 891 ORIGINAL GRAPH NODE: AACAGACTTCCTCAAGGCTCATCA with ID: 892 ORIGINAL GRAPH NODE: ACAGACTTCCTCAAGGCTCATCAG with ID: 893 ORIGINAL GRAPH NODE: CAGACTTCCTCAAGGCTCATCAGC with ID: 894 ORIGINAL GRAPH NODE: AGACTTCCTCAAGGCTCATCAGCA with ID: 895 ORIGINAL GRAPH NODE: GACTTCCTCAAGGCTCATCAGCAA with ID: 896 ORIGINAL GRAPH NODE: ACTTCCTCAAGGCTCATCAGCAAG with ID: 897 ORIGINAL GRAPH NODE: CTTCCTCAAGGCTCATCAGCAAGA with ID: 898 ORIGINAL GRAPH NODE: TTCCTCAAGGCTCATCAGCAAGAA with ID: 899 ORIGINAL GRAPH NODE: TCCTCAAGGCTCATCAGCAAGAAG with ID: 900 ORIGINAL GRAPH NODE: CCTCAAGGCTCATCAGCAAGAAGA with ID: 901 ORIGINAL GRAPH NODE: CTCAAGGCTCATCAGCAAGAAGAA with ID: 902 ORIGINAL GRAPH NODE: TCAAGGCTCATCAGCAAGAAGAAA with ID: 903 ORIGINAL GRAPH NODE: CAAGGCTCATCAGCAAGAAGAAAT with ID: 904 ORIGINAL GRAPH NODE: AAGGCTCATCAGCAAGAAGAAATC with ID: 905 ORIGINAL GRAPH NODE: AGGCTCATCAGCAAGAAGAAATCT with ID: 906 ORIGINAL GRAPH NODE: GGCTCATCAGCAAGAAGAAATCTT with ID: 907 ORIGINAL GRAPH NODE: GCTCATCAGCAAGAAGAAATCTTT with ID: 908 ORIGINAL GRAPH NODE: AGAATACAAAATGCCTTCCTCCAG with ID: 945 ORIGINAL GRAPH NODE: GAATACAAAATGCCTTCCTCCAGC with ID: 946 ORIGINAL GRAPH NODE: AATACAAAATGCCTTCCTCCAGCC with ID: 947 ORIGINAL GRAPH NODE: ATACAAAATGCCTTCCTCCAGCCT with ID: 948 ORIGINAL GRAPH NODE: TACAAAATGCCTTCCTCCAGCCTC with ID: 949 ORIGINAL GRAPH NODE: ACAAAATGCCTTCCTCCAGCCTCA with ID: 950 ORIGINAL GRAPH NODE: CAAAATGCCTTCCTCCAGCCTCAT with ID: 951 ORIGINAL GRAPH NODE: AAAATGCCTTCCTCCAGCCTCATC with ID: 952 ORIGINAL GRAPH NODE: AAATGCCTTCCTCCAGCCTCATCA with ID: 953 ORIGINAL GRAPH NODE: AATGCCTTCCTCCAGCCTCATCAG with ID: 954 ORIGINAL GRAPH NODE: ATGCCTTCCTCCAGCCTCATCAGC with ID: 955 ORIGINAL GRAPH NODE: TGCCTTCCTCCAGCCTCATCAGCA with ID: 956 ORIGINAL GRAPH NODE: GCCTTCCTCCAGCCTCATCAGCAG with ID: 957 ORIGINAL GRAPH NODE: CCTTCCTCCAGCCTCATCAGCAGG with ID: 958 ORIGINAL GRAPH NODE: CTTCCTCCAGCCTCATCAGCAGGA with ID: 959 ORIGINAL GRAPH NODE: TTCCTCCAGCCTCATCAGCAGGAA with ID: 960 ORIGINAL GRAPH NODE: TCCTCCAGCCTCATCAGCAGGAAG with ID: 961 ORIGINAL GRAPH NODE: CCTCCAGCCTCATCAGCAGGAAGA with ID: 962 ORIGINAL GRAPH NODE: CTCCAGCCTCATCAGCAGGAAGAA with ID: 963 ORIGINAL GRAPH NODE: TCCAGCCTCATCAGCAGGAAGAAA with ID: 964 ORIGINAL GRAPH NODE: CCAGCCTCATCAGCAGGAAGAAAT with ID: 965 ORIGINAL GRAPH NODE: CAGCCTCATCAGCAGGAAGAAATC with ID: 966 ORIGINAL GRAPH NODE: AGCCTCATCAGCAGGAAGAAATCT with ID: 967 ORIGINAL GRAPH NODE: GCCTCATCAGCAGGAAGAAATCTT with ID: 968 ORIGINAL GRAPH NODE: CCTCATCAGCAGGAAGAAATCTTT with ID: 969 ORIGINAL GRAPH NODE: CTCATCAGCAGGAAGAAATCTTTC with ID: 970 ORIGINAL GRAPH NODE: TCATCAGCAGGAAGAAATCTTTCT with ID: 971 ORIGINAL GRAPH NODE: CATCAGCAGGAAGAAATCTTTCTT with ID: 972 ORIGINAL GRAPH NODE: ATCAGCAGGAAGAAATCTTTCTTT with ID: 973 ORIGINAL GRAPH NODE: TCAGCAGGAAGAAATCTTTCTTTC with ID: 974 ORIGINAL GRAPH NODE: CAGCAGGAAGAAATCTTTCTTTCC with ID: 975 ORIGINAL GRAPH NODE: AGCAGGAAGAAATCTTTCTTTCCA with ID: 976 ORIGINAL GRAPH NODE: GCAGGAAGAAATCTTTCTTTCCAA with ID: 977 ORIGINAL GRAPH NODE: CAGGAAGAAATCTTTCTTTCCAAG with ID: 978 ORIGINAL GRAPH NODE: AGGAAGAAATCTTTCTTTCCAAGT with ID: 979 ORIGINAL GRAPH NODE: GGAAGAAATCTTTCTTTCCAAGTA with ID: 980 fixExtremeleyHighSingleEdges() fixExtremelyHighSingleEdges() removeLightEdges() removeLightEdges() SECTION ================= REMOVING LIGHT In EDGES ================= SECTION ================= REMOVING LIGHT OUT EDGES ================= SECTION ================= REMOVING LIGHT FLOW EDGES ================= FLOW: total in for vertex GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) is 0, total out is 2, averageCov=0 FLOW: total in for vertex C:W-1(V381_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V382_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V383_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V384_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V385_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V386_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V387_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V388_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V389_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V390_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V391_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V392_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V393_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V394_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V395_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V396_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V397_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V398_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V399_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V400_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V401_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V402_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V403_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V404_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V405_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V406_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V407_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V408_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V409_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V410_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V411_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V412_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V413_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V414_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V415_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V416_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V417_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V418_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V419_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V420_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V421_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V422_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V423_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V424_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V425_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V426_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V427_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V428_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V429_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V430_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V431_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V432_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V433_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V434_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V435_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V436_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V437_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V438_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V439_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V440_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V441_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V442_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V443_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V444_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V445_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V446_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V447_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V448_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V449_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V450_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V451_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V452_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V453_D-1) is 10, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V454_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V455_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V456_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V457_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V458_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V459_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V460_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V461_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V462_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V463_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V464_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V465_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V466_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V467_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V468_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V469_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V470_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V471_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V472_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V473_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V474_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V475_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V476_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V477_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V478_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V479_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V480_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V481_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V482_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V483_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V484_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V485_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V486_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V487_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V488_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V489_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V490_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V491_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V492_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V493_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V494_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V495_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V496_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V497_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V498_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V499_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V500_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V501_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V502_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V503_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V504_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V505_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V506_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V507_D-1) is 8, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V508_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V509_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V510_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V511_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V512_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V513_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V514_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V515_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V516_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V517_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V518_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V519_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V520_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V521_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V522_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V523_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V524_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V525_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V526_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V527_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V528_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V529_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V530_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V531_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V532_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V533_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V534_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V535_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V536_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V537_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V538_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V539_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V540_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V541_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V542_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V543_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V544_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V545_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V546_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V547_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V548_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V549_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V550_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V551_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V552_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V553_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V554_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V555_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V556_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V557_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V558_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V559_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V560_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V561_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V562_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V563_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V564_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V565_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V566_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V567_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V568_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V569_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V570_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V571_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V572_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V573_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V574_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V575_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V576_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V577_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V578_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V579_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V580_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V581_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V582_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V583_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V584_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V585_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V586_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V587_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V588_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V589_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V590_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V591_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V592_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V593_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V594_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V595_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V596_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V597_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V598_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V599_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V600_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V601_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V602_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V603_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V604_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V605_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V606_D-1) is 2, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V607_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V608_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V609_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V610_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V611_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V612_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V613_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V614_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V615_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V616_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V617_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V618_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V619_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V620_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V621_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V622_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V623_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V624_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V625_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V626_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V627_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V628_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V629_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V630_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V631_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V632_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V633_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V634_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V635_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V636_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V637_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V638_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V639_D-1) is 6, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V640_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V641_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V642_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V643_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V644_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V645_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V646_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V647_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V648_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V649_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V650_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V651_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V652_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V653_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V654_D-1) is 8, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V655_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V656_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex T:W-1(V657_D-1) is 10, total out is 12, averageCov=-1 FLOW: total in for vertex G:W-1(V658_D-1) is 12, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V659_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V660_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V661_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V662_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex A:W-1(V663_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex C:W-1(V664_D-1) is 10, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V665_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V666_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V667_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V668_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V669_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V670_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V671_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V672_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V673_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V674_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V675_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V676_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V677_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V678_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V679_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V680_D-1) is 8, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V681_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V682_D-1) is 10, total out is 10, averageCov=-1 FLOW: total in for vertex G:W-1(V683_D-1) is 10, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V684_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex G:W-1(V685_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex C:W-1(V686_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex T:W-1(V687_D-1) is 8, total out is 8, averageCov=-1 FLOW: total in for vertex A:W-1(V688_D-1) is 8, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V689_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V690_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V691_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V692_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V693_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V694_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V695_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V696_D-1) is 4, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V697_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V698_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V699_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V700_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V701_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V702_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V703_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V704_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V705_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V706_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V707_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V708_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V709_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V710_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V711_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V712_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V713_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V714_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V715_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V716_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V717_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V718_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V719_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V720_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V721_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V722_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V723_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V724_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V725_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V726_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V727_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V728_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V729_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V730_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V731_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V732_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V733_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V734_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V735_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V736_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V737_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex A:W-1(V738_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex T:W-1(V739_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex G:W-1(V740_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V741_D-1) is 6, total out is 6, averageCov=-1 FLOW: total in for vertex C:W-1(V742_D-1) is 6, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V743_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex G:W-1(V744_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V745_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex T:W-1(V746_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex C:W-1(V747_D-1) is 4, total out is 4, averageCov=-1 FLOW: total in for vertex A:W-1(V748_D-1) is 4, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V749_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V750_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V751_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V752_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V753_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V754_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V755_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V756_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V757_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V758_D-1) is 2, total out is 0, averageCov=-1 FLOW: total in for vertex GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) is 0, total out is 2, averageCov=0 FLOW: total in for vertex A:W-1(V787_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V788_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V789_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V790_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V791_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V792_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V793_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V794_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V795_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V796_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V797_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V798_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V799_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V800_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V801_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V802_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V803_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V804_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V805_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V806_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V807_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V808_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V809_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V810_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V811_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V812_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V813_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V814_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V815_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V816_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V817_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V818_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V819_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V820_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V821_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V822_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V823_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V824_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V825_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V826_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V827_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V828_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V829_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V830_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V831_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V832_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V833_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V834_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V835_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V836_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V885_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V886_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V887_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V888_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V889_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V890_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V891_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V892_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V893_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V894_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V895_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V896_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V897_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V898_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V899_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V900_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V901_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V902_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V903_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V904_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V905_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V906_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V907_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V908_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) is 0, total out is 2, averageCov=0 FLOW: total in for vertex C:W-1(V946_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V947_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V948_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V949_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V950_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V951_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V952_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V953_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V954_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V955_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V956_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V957_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V958_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V959_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V960_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V961_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V962_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V963_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V964_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V965_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V966_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V967_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V968_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V969_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V970_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V971_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V972_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V973_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V974_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex C:W-1(V975_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V976_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V977_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex G:W-1(V978_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex T:W-1(V979_D-1) is 2, total out is 2, averageCov=-1 FLOW: total in for vertex A:W-1(V980_D-1) is 2, total out is 2, averageCov=-1 ## Node descriptions before linear compaction: ## Node descriptions: GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) Preds: [] Succ: [C:W-1(V381_D-1) ] C:W-1(V381_D-1) Preds: [GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) ] Succ: [A:W-1(V382_D-1) ] A:W-1(V382_D-1) Preds: [C:W-1(V381_D-1) ] Succ: [C:W-1(V383_D-1) ] C:W-1(V383_D-1) Preds: [A:W-1(V382_D-1) ] Succ: [A:W-1(V384_D-1) ] A:W-1(V384_D-1) Preds: [C:W-1(V383_D-1) ] Succ: [T:W-1(V385_D-1) ] T:W-1(V385_D-1) Preds: [A:W-1(V384_D-1) ] Succ: [T:W-1(V386_D-1) ] T:W-1(V386_D-1) Preds: [T:W-1(V385_D-1) ] Succ: [T:W-1(V387_D-1) ] T:W-1(V387_D-1) Preds: [T:W-1(V386_D-1) ] Succ: [C:W-1(V388_D-1) ] C:W-1(V388_D-1) Preds: [T:W-1(V387_D-1) ] Succ: [T:W-1(V389_D-1) ] T:W-1(V389_D-1) Preds: [C:W-1(V388_D-1) ] Succ: [A:W-1(V390_D-1) ] A:W-1(V390_D-1) Preds: [T:W-1(V389_D-1) ] Succ: [C:W-1(V391_D-1) ] C:W-1(V391_D-1) Preds: [A:W-1(V390_D-1) ] Succ: [T:W-1(V392_D-1) ] T:W-1(V392_D-1) Preds: [C:W-1(V391_D-1) ] Succ: [G:W-1(V393_D-1) ] G:W-1(V393_D-1) Preds: [T:W-1(V392_D-1) ] Succ: [G:W-1(V394_D-1) ] G:W-1(V394_D-1) Preds: [G:W-1(V393_D-1) ] Succ: [C:W-1(V395_D-1) ] C:W-1(V395_D-1) Preds: [G:W-1(V394_D-1) ] Succ: [T:W-1(V396_D-1) ] T:W-1(V396_D-1) Preds: [C:W-1(V395_D-1) ] Succ: [A:W-1(V397_D-1) ] A:W-1(V397_D-1) Preds: [T:W-1(V396_D-1) ] Succ: [C:W-1(V398_D-1) ] C:W-1(V398_D-1) Preds: [A:W-1(V397_D-1) ] Succ: [A:W-1(V399_D-1) ] A:W-1(V399_D-1) Preds: [C:W-1(V398_D-1) ] Succ: [A:W-1(V400_D-1) ] A:W-1(V400_D-1) Preds: [A:W-1(V399_D-1) ] Succ: [A:W-1(V401_D-1) ] A:W-1(V401_D-1) Preds: [A:W-1(V400_D-1) ] Succ: [C:W-1(V402_D-1) ] C:W-1(V402_D-1) Preds: [A:W-1(V401_D-1) ] Succ: [A:W-1(V403_D-1) ] A:W-1(V403_D-1) Preds: [C:W-1(V402_D-1) ] Succ: [G:W-1(V404_D-1) ] G:W-1(V404_D-1) Preds: [A:W-1(V403_D-1) ] Succ: [A:W-1(V405_D-1) ] A:W-1(V405_D-1) Preds: [G:W-1(V404_D-1) ] Succ: [C:W-1(V406_D-1) ] C:W-1(V406_D-1) Preds: [A:W-1(V405_D-1) ] Succ: [T:W-1(V407_D-1) ] T:W-1(V407_D-1) Preds: [C:W-1(V406_D-1) ] Succ: [T:W-1(V408_D-1) ] T:W-1(V408_D-1) Preds: [T:W-1(V407_D-1) ] Succ: [C:W-1(V409_D-1) ] C:W-1(V409_D-1) Preds: [T:W-1(V408_D-1) ] Succ: [C:W-1(V410_D-1) ] C:W-1(V410_D-1) Preds: [C:W-1(V409_D-1) ] Succ: [T:W-1(V411_D-1) ] T:W-1(V411_D-1) Preds: [C:W-1(V410_D-1) ] Succ: [C:W-1(V412_D-1) ] C:W-1(V412_D-1) Preds: [T:W-1(V411_D-1) ] Succ: [A:W-1(V413_D-1) ] A:W-1(V413_D-1) Preds: [C:W-1(V412_D-1) ] Succ: [A:W-1(V414_D-1) ] A:W-1(V414_D-1) Preds: [A:W-1(V413_D-1) ] Succ: [G:W-1(V415_D-1) ] G:W-1(V415_D-1) Preds: [A:W-1(V414_D-1) ] Succ: [C:W-1(V416_D-1) G:W-1(V885_D-1) ] C:W-1(V416_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V417_D-1) ] C:W-1(V417_D-1) Preds: [C:W-1(V416_D-1) ] Succ: [T:W-1(V418_D-1) ] T:W-1(V418_D-1) Preds: [C:W-1(V417_D-1) ] Succ: [C:W-1(V419_D-1) ] C:W-1(V419_D-1) Preds: [T:W-1(V418_D-1) ] Succ: [A:W-1(V420_D-1) ] A:W-1(V420_D-1) Preds: [C:W-1(V419_D-1) ] Succ: [T:W-1(V421_D-1) ] T:W-1(V421_D-1) Preds: [A:W-1(V420_D-1) ] Succ: [C:W-1(V422_D-1) ] C:W-1(V422_D-1) Preds: [T:W-1(V421_D-1) ] Succ: [A:W-1(V423_D-1) ] A:W-1(V423_D-1) Preds: [C:W-1(V422_D-1) ] Succ: [G:W-1(V424_D-1) ] G:W-1(V424_D-1) Preds: [A:W-1(V423_D-1) ] Succ: [C:W-1(V425_D-1) ] C:W-1(V425_D-1) Preds: [G:W-1(V424_D-1) ] Succ: [A:W-1(V426_D-1) ] A:W-1(V426_D-1) Preds: [C:W-1(V425_D-1) ] Succ: [A:W-1(V427_D-1) ] A:W-1(V427_D-1) Preds: [A:W-1(V426_D-1) ] Succ: [G:W-1(V428_D-1) ] G:W-1(V428_D-1) Preds: [A:W-1(V427_D-1) ] Succ: [A:W-1(V429_D-1) ] A:W-1(V429_D-1) Preds: [G:W-1(V428_D-1) ] Succ: [A:W-1(V430_D-1) ] A:W-1(V430_D-1) Preds: [A:W-1(V429_D-1) ] Succ: [G:W-1(V431_D-1) ] G:W-1(V431_D-1) Preds: [A:W-1(V430_D-1) ] Succ: [A:W-1(V432_D-1) ] A:W-1(V432_D-1) Preds: [G:W-1(V431_D-1) ] Succ: [A:W-1(V433_D-1) ] A:W-1(V433_D-1) Preds: [A:W-1(V432_D-1) ] Succ: [A:W-1(V434_D-1) ] A:W-1(V434_D-1) Preds: [A:W-1(V433_D-1) ] Succ: [T:W-1(V435_D-1) ] T:W-1(V435_D-1) Preds: [A:W-1(V434_D-1) ] Succ: [C:W-1(V436_D-1) ] C:W-1(V436_D-1) Preds: [T:W-1(V435_D-1) ] Succ: [T:W-1(V437_D-1) ] T:W-1(V437_D-1) Preds: [C:W-1(V436_D-1) ] Succ: [T:W-1(V438_D-1) ] T:W-1(V438_D-1) Preds: [T:W-1(V437_D-1) ] Succ: [T:W-1(V439_D-1) ] T:W-1(V439_D-1) Preds: [T:W-1(V438_D-1) ] Succ: [C:W-1(V440_D-1) ] C:W-1(V440_D-1) Preds: [T:W-1(V439_D-1) T:W-1(V908_D-1) ] Succ: [T:W-1(V441_D-1) ] T:W-1(V441_D-1) Preds: [C:W-1(V440_D-1) ] Succ: [T:W-1(V442_D-1) ] T:W-1(V442_D-1) Preds: [T:W-1(V441_D-1) ] Succ: [T:W-1(V443_D-1) ] T:W-1(V443_D-1) Preds: [T:W-1(V442_D-1) ] Succ: [C:W-1(V444_D-1) ] C:W-1(V444_D-1) Preds: [T:W-1(V443_D-1) ] Succ: [C:W-1(V445_D-1) ] C:W-1(V445_D-1) Preds: [C:W-1(V444_D-1) ] Succ: [A:W-1(V446_D-1) ] A:W-1(V446_D-1) Preds: [C:W-1(V445_D-1) ] Succ: [A:W-1(V447_D-1) ] A:W-1(V447_D-1) Preds: [A:W-1(V446_D-1) ] Succ: [G:W-1(V448_D-1) ] G:W-1(V448_D-1) Preds: [A:W-1(V447_D-1) ] Succ: [T:W-1(V449_D-1) ] T:W-1(V449_D-1) Preds: [G:W-1(V448_D-1) ] Succ: [A:W-1(V450_D-1) ] A:W-1(V450_D-1) Preds: [T:W-1(V449_D-1) ] Succ: [G:W-1(V451_D-1) ] G:W-1(V451_D-1) Preds: [A:W-1(V450_D-1) A:W-1(V980_D-1) ] Succ: [T:W-1(V452_D-1) ] T:W-1(V452_D-1) Preds: [G:W-1(V451_D-1) ] Succ: [G:W-1(V453_D-1) ] G:W-1(V453_D-1) Preds: [T:W-1(V452_D-1) ] Succ: [T:W-1(V454_D-1) ] T:W-1(V454_D-1) Preds: [G:W-1(V453_D-1) ] Succ: [C:W-1(V455_D-1) ] C:W-1(V455_D-1) Preds: [T:W-1(V454_D-1) ] Succ: [T:W-1(V456_D-1) ] T:W-1(V456_D-1) Preds: [C:W-1(V455_D-1) ] Succ: [T:W-1(V457_D-1) ] T:W-1(V457_D-1) Preds: [T:W-1(V456_D-1) ] Succ: [A:W-1(V458_D-1) ] A:W-1(V458_D-1) Preds: [T:W-1(V457_D-1) ] Succ: [A:W-1(V459_D-1) ] A:W-1(V459_D-1) Preds: [A:W-1(V458_D-1) ] Succ: [C:W-1(V460_D-1) ] C:W-1(V460_D-1) Preds: [A:W-1(V459_D-1) ] Succ: [T:W-1(V461_D-1) ] T:W-1(V461_D-1) Preds: [C:W-1(V460_D-1) ] Succ: [C:W-1(V462_D-1) ] C:W-1(V462_D-1) Preds: [T:W-1(V461_D-1) ] Succ: [A:W-1(V463_D-1) ] A:W-1(V463_D-1) Preds: [C:W-1(V462_D-1) ] Succ: [G:W-1(V464_D-1) ] G:W-1(V464_D-1) Preds: [A:W-1(V463_D-1) ] Succ: [G:W-1(V465_D-1) ] G:W-1(V465_D-1) Preds: [G:W-1(V464_D-1) ] Succ: [A:W-1(V466_D-1) ] A:W-1(V466_D-1) Preds: [G:W-1(V465_D-1) ] Succ: [G:W-1(V467_D-1) ] G:W-1(V467_D-1) Preds: [A:W-1(V466_D-1) ] Succ: [A:W-1(V468_D-1) ] A:W-1(V468_D-1) Preds: [G:W-1(V467_D-1) ] Succ: [T:W-1(V469_D-1) ] T:W-1(V469_D-1) Preds: [A:W-1(V468_D-1) ] Succ: [C:W-1(V470_D-1) ] C:W-1(V470_D-1) Preds: [T:W-1(V469_D-1) ] Succ: [A:W-1(V471_D-1) ] A:W-1(V471_D-1) Preds: [C:W-1(V470_D-1) ] Succ: [T:W-1(V472_D-1) ] T:W-1(V472_D-1) Preds: [A:W-1(V471_D-1) ] Succ: [G:W-1(V473_D-1) ] G:W-1(V473_D-1) Preds: [T:W-1(V472_D-1) ] Succ: [G:W-1(V474_D-1) ] G:W-1(V474_D-1) Preds: [G:W-1(V473_D-1) ] Succ: [T:W-1(V475_D-1) ] T:W-1(V475_D-1) Preds: [G:W-1(V474_D-1) ] Succ: [A:W-1(V476_D-1) ] A:W-1(V476_D-1) Preds: [T:W-1(V475_D-1) ] Succ: [G:W-1(V477_D-1) ] G:W-1(V477_D-1) Preds: [A:W-1(V476_D-1) ] Succ: [G:W-1(V478_D-1) ] G:W-1(V478_D-1) Preds: [G:W-1(V477_D-1) ] Succ: [G:W-1(V479_D-1) ] G:W-1(V479_D-1) Preds: [G:W-1(V478_D-1) ] Succ: [A:W-1(V480_D-1) ] A:W-1(V480_D-1) Preds: [G:W-1(V479_D-1) ] Succ: [A:W-1(V481_D-1) ] A:W-1(V481_D-1) Preds: [A:W-1(V480_D-1) ] Succ: [G:W-1(V482_D-1) ] G:W-1(V482_D-1) Preds: [A:W-1(V481_D-1) ] Succ: [G:W-1(V483_D-1) ] G:W-1(V483_D-1) Preds: [G:W-1(V482_D-1) ] Succ: [G:W-1(V484_D-1) ] G:W-1(V484_D-1) Preds: [G:W-1(V483_D-1) ] Succ: [G:W-1(V485_D-1) ] G:W-1(V485_D-1) Preds: [G:W-1(V484_D-1) ] Succ: [T:W-1(V486_D-1) ] T:W-1(V486_D-1) Preds: [G:W-1(V485_D-1) ] Succ: [C:W-1(V487_D-1) ] C:W-1(V487_D-1) Preds: [T:W-1(V486_D-1) ] Succ: [A:W-1(V488_D-1) ] A:W-1(V488_D-1) Preds: [C:W-1(V487_D-1) ] Succ: [G:W-1(V489_D-1) ] G:W-1(V489_D-1) Preds: [A:W-1(V488_D-1) ] Succ: [G:W-1(V490_D-1) ] G:W-1(V490_D-1) Preds: [G:W-1(V489_D-1) ] Succ: [C:W-1(V491_D-1) ] C:W-1(V491_D-1) Preds: [G:W-1(V490_D-1) ] Succ: [C:W-1(V492_D-1) ] C:W-1(V492_D-1) Preds: [C:W-1(V491_D-1) ] Succ: [A:W-1(V493_D-1) ] A:W-1(V493_D-1) Preds: [C:W-1(V492_D-1) ] Succ: [C:W-1(V494_D-1) ] C:W-1(V494_D-1) Preds: [A:W-1(V493_D-1) ] Succ: [T:W-1(V495_D-1) ] T:W-1(V495_D-1) Preds: [C:W-1(V494_D-1) ] Succ: [T:W-1(V496_D-1) ] T:W-1(V496_D-1) Preds: [T:W-1(V495_D-1) ] Succ: [C:W-1(V497_D-1) ] C:W-1(V497_D-1) Preds: [T:W-1(V496_D-1) ] Succ: [A:W-1(V498_D-1) ] A:W-1(V498_D-1) Preds: [C:W-1(V497_D-1) ] Succ: [C:W-1(V499_D-1) ] C:W-1(V499_D-1) Preds: [A:W-1(V498_D-1) ] Succ: [A:W-1(V500_D-1) ] A:W-1(V500_D-1) Preds: [C:W-1(V499_D-1) ] Succ: [A:W-1(V501_D-1) ] A:W-1(V501_D-1) Preds: [A:W-1(V500_D-1) ] Succ: [G:W-1(V502_D-1) ] G:W-1(V502_D-1) Preds: [A:W-1(V501_D-1) ] Succ: [G:W-1(V503_D-1) ] G:W-1(V503_D-1) Preds: [G:W-1(V502_D-1) ] Succ: [A:W-1(V504_D-1) ] A:W-1(V504_D-1) Preds: [G:W-1(V503_D-1) ] Succ: [G:W-1(V505_D-1) ] G:W-1(V505_D-1) Preds: [A:W-1(V504_D-1) ] Succ: [C:W-1(V506_D-1) ] C:W-1(V506_D-1) Preds: [G:W-1(V505_D-1) ] Succ: [A:W-1(V507_D-1) ] A:W-1(V507_D-1) Preds: [C:W-1(V506_D-1) ] Succ: [G:W-1(V508_D-1) ] G:W-1(V508_D-1) Preds: [A:W-1(V507_D-1) ] Succ: [A:W-1(V509_D-1) ] A:W-1(V509_D-1) Preds: [G:W-1(V508_D-1) ] Succ: [G:W-1(V510_D-1) ] G:W-1(V510_D-1) Preds: [A:W-1(V509_D-1) ] Succ: [T:W-1(V511_D-1) ] T:W-1(V511_D-1) Preds: [G:W-1(V510_D-1) ] Succ: [T:W-1(V512_D-1) ] T:W-1(V512_D-1) Preds: [T:W-1(V511_D-1) ] Succ: [A:W-1(V513_D-1) ] A:W-1(V513_D-1) Preds: [T:W-1(V512_D-1) ] Succ: [G:W-1(V514_D-1) ] G:W-1(V514_D-1) Preds: [A:W-1(V513_D-1) ] Succ: [G:W-1(V515_D-1) ] G:W-1(V515_D-1) Preds: [G:W-1(V514_D-1) ] Succ: [A:W-1(V516_D-1) ] A:W-1(V516_D-1) Preds: [G:W-1(V515_D-1) ] Succ: [A:W-1(V517_D-1) ] A:W-1(V517_D-1) Preds: [A:W-1(V516_D-1) ] Succ: [G:W-1(V518_D-1) ] G:W-1(V518_D-1) Preds: [A:W-1(V517_D-1) ] Succ: [C:W-1(V519_D-1) ] C:W-1(V519_D-1) Preds: [G:W-1(V518_D-1) ] Succ: [T:W-1(V520_D-1) ] T:W-1(V520_D-1) Preds: [C:W-1(V519_D-1) ] Succ: [C:W-1(V521_D-1) ] C:W-1(V521_D-1) Preds: [T:W-1(V520_D-1) ] Succ: [C:W-1(V522_D-1) ] C:W-1(V522_D-1) Preds: [C:W-1(V521_D-1) ] Succ: [C:W-1(V523_D-1) ] C:W-1(V523_D-1) Preds: [C:W-1(V522_D-1) ] Succ: [T:W-1(V524_D-1) ] T:W-1(V524_D-1) Preds: [C:W-1(V523_D-1) ] Succ: [G:W-1(V525_D-1) C:W-1(V813_D-1) ] G:W-1(V525_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V526_D-1) ] A:W-1(V526_D-1) Preds: [G:W-1(V525_D-1) ] Succ: [G:W-1(V527_D-1) ] G:W-1(V527_D-1) Preds: [A:W-1(V526_D-1) ] Succ: [C:W-1(V528_D-1) ] C:W-1(V528_D-1) Preds: [G:W-1(V527_D-1) ] Succ: [A:W-1(V529_D-1) ] A:W-1(V529_D-1) Preds: [C:W-1(V528_D-1) ] Succ: [C:W-1(V530_D-1) ] C:W-1(V530_D-1) Preds: [A:W-1(V529_D-1) ] Succ: [T:W-1(V531_D-1) ] T:W-1(V531_D-1) Preds: [C:W-1(V530_D-1) ] Succ: [C:W-1(V532_D-1) ] C:W-1(V532_D-1) Preds: [T:W-1(V531_D-1) ] Succ: [T:W-1(V533_D-1) ] T:W-1(V533_D-1) Preds: [C:W-1(V532_D-1) ] Succ: [G:W-1(V534_D-1) ] G:W-1(V534_D-1) Preds: [T:W-1(V533_D-1) ] Succ: [A:W-1(V535_D-1) ] A:W-1(V535_D-1) Preds: [G:W-1(V534_D-1) ] Succ: [A:W-1(V536_D-1) ] A:W-1(V536_D-1) Preds: [A:W-1(V535_D-1) ] Succ: [C:W-1(V537_D-1) ] C:W-1(V537_D-1) Preds: [A:W-1(V536_D-1) ] Succ: [C:W-1(V538_D-1) ] C:W-1(V538_D-1) Preds: [C:W-1(V537_D-1) ] Succ: [C:W-1(V539_D-1) ] C:W-1(V539_D-1) Preds: [C:W-1(V538_D-1) ] Succ: [T:W-1(V540_D-1) ] T:W-1(V540_D-1) Preds: [C:W-1(V539_D-1) ] Succ: [G:W-1(V541_D-1) ] G:W-1(V541_D-1) Preds: [T:W-1(V540_D-1) ] Succ: [T:W-1(V542_D-1) ] T:W-1(V542_D-1) Preds: [G:W-1(V541_D-1) ] Succ: [G:W-1(V543_D-1) ] G:W-1(V543_D-1) Preds: [T:W-1(V542_D-1) ] Succ: [A:W-1(V544_D-1) ] A:W-1(V544_D-1) Preds: [G:W-1(V543_D-1) ] Succ: [G:W-1(V545_D-1) ] G:W-1(V545_D-1) Preds: [A:W-1(V544_D-1) ] Succ: [G:W-1(V546_D-1) ] G:W-1(V546_D-1) Preds: [G:W-1(V545_D-1) ] Succ: [C:W-1(V547_D-1) ] C:W-1(V547_D-1) Preds: [G:W-1(V546_D-1) ] Succ: [A:W-1(V548_D-1) ] A:W-1(V548_D-1) Preds: [C:W-1(V547_D-1) ] Succ: [A:W-1(V549_D-1) ] A:W-1(V549_D-1) Preds: [A:W-1(V548_D-1) A:W-1(V836_D-1) ] Succ: [G:W-1(V550_D-1) ] G:W-1(V550_D-1) Preds: [A:W-1(V549_D-1) ] Succ: [T:W-1(V551_D-1) ] T:W-1(V551_D-1) Preds: [G:W-1(V550_D-1) ] Succ: [C:W-1(V552_D-1) ] C:W-1(V552_D-1) Preds: [T:W-1(V551_D-1) ] Succ: [C:W-1(V553_D-1) ] C:W-1(V553_D-1) Preds: [C:W-1(V552_D-1) ] Succ: [A:W-1(V554_D-1) ] A:W-1(V554_D-1) Preds: [C:W-1(V553_D-1) ] Succ: [C:W-1(V555_D-1) ] C:W-1(V555_D-1) Preds: [A:W-1(V554_D-1) ] Succ: [C:W-1(V556_D-1) ] C:W-1(V556_D-1) Preds: [C:W-1(V555_D-1) ] Succ: [A:W-1(V557_D-1) ] A:W-1(V557_D-1) Preds: [C:W-1(V556_D-1) ] Succ: [C:W-1(V558_D-1) ] C:W-1(V558_D-1) Preds: [A:W-1(V557_D-1) ] Succ: [C:W-1(V559_D-1) ] C:W-1(V559_D-1) Preds: [C:W-1(V558_D-1) ] Succ: [A:W-1(V560_D-1) ] A:W-1(V560_D-1) Preds: [C:W-1(V559_D-1) ] Succ: [G:W-1(V561_D-1) ] G:W-1(V561_D-1) Preds: [A:W-1(V560_D-1) ] Succ: [C:W-1(V562_D-1) ] C:W-1(V562_D-1) Preds: [G:W-1(V561_D-1) ] Succ: [G:W-1(V563_D-1) ] G:W-1(V563_D-1) Preds: [C:W-1(V562_D-1) ] Succ: [T:W-1(V564_D-1) ] T:W-1(V564_D-1) Preds: [G:W-1(V563_D-1) ] Succ: [A:W-1(V565_D-1) ] A:W-1(V565_D-1) Preds: [T:W-1(V564_D-1) ] Succ: [T:W-1(V566_D-1) ] T:W-1(V566_D-1) Preds: [A:W-1(V565_D-1) ] Succ: [C:W-1(V567_D-1) ] C:W-1(V567_D-1) Preds: [T:W-1(V566_D-1) ] Succ: [T:W-1(V568_D-1) ] T:W-1(V568_D-1) Preds: [C:W-1(V567_D-1) ] Succ: [A:W-1(V569_D-1) ] A:W-1(V569_D-1) Preds: [T:W-1(V568_D-1) ] Succ: [G:W-1(V570_D-1) ] G:W-1(V570_D-1) Preds: [A:W-1(V569_D-1) ] Succ: [A:W-1(V571_D-1) ] A:W-1(V571_D-1) Preds: [G:W-1(V570_D-1) ] Succ: [C:W-1(V572_D-1) ] C:W-1(V572_D-1) Preds: [A:W-1(V571_D-1) ] Succ: [C:W-1(V573_D-1) ] C:W-1(V573_D-1) Preds: [C:W-1(V572_D-1) ] Succ: [C:W-1(V574_D-1) ] C:W-1(V574_D-1) Preds: [C:W-1(V573_D-1) ] Succ: [A:W-1(V575_D-1) ] A:W-1(V575_D-1) Preds: [C:W-1(V574_D-1) ] Succ: [G:W-1(V576_D-1) ] G:W-1(V576_D-1) Preds: [A:W-1(V575_D-1) ] Succ: [G:W-1(V577_D-1) ] G:W-1(V577_D-1) Preds: [G:W-1(V576_D-1) ] Succ: [C:W-1(V578_D-1) ] C:W-1(V578_D-1) Preds: [G:W-1(V577_D-1) ] Succ: [C:W-1(V579_D-1) ] C:W-1(V579_D-1) Preds: [C:W-1(V578_D-1) ] Succ: [A:W-1(V580_D-1) ] A:W-1(V580_D-1) Preds: [C:W-1(V579_D-1) ] Succ: [T:W-1(V581_D-1) ] T:W-1(V581_D-1) Preds: [A:W-1(V580_D-1) ] Succ: [C:W-1(V582_D-1) ] C:W-1(V582_D-1) Preds: [T:W-1(V581_D-1) ] Succ: [T:W-1(V583_D-1) ] T:W-1(V583_D-1) Preds: [C:W-1(V582_D-1) ] Succ: [A:W-1(V584_D-1) ] A:W-1(V584_D-1) Preds: [T:W-1(V583_D-1) ] Succ: [A:W-1(V585_D-1) ] A:W-1(V585_D-1) Preds: [A:W-1(V584_D-1) ] Succ: [T:W-1(V586_D-1) ] T:W-1(V586_D-1) Preds: [A:W-1(V585_D-1) ] Succ: [A:W-1(V587_D-1) ] A:W-1(V587_D-1) Preds: [T:W-1(V586_D-1) ] Succ: [A:W-1(V588_D-1) ] A:W-1(V588_D-1) Preds: [A:W-1(V587_D-1) ] Succ: [A:W-1(V589_D-1) ] A:W-1(V589_D-1) Preds: [A:W-1(V588_D-1) ] Succ: [G:W-1(V590_D-1) ] G:W-1(V590_D-1) Preds: [A:W-1(V589_D-1) ] Succ: [G:W-1(V591_D-1) ] G:W-1(V591_D-1) Preds: [G:W-1(V590_D-1) ] Succ: [A:W-1(V592_D-1) ] A:W-1(V592_D-1) Preds: [G:W-1(V591_D-1) ] Succ: [A:W-1(V593_D-1) ] A:W-1(V593_D-1) Preds: [A:W-1(V592_D-1) ] Succ: [A:W-1(V594_D-1) ] A:W-1(V594_D-1) Preds: [A:W-1(V593_D-1) ] Succ: [A:W-1(V595_D-1) ] A:W-1(V595_D-1) Preds: [A:W-1(V594_D-1) ] Succ: [C:W-1(V596_D-1) ] C:W-1(V596_D-1) Preds: [A:W-1(V595_D-1) ] Succ: [T:W-1(V597_D-1) ] T:W-1(V597_D-1) Preds: [C:W-1(V596_D-1) ] Succ: [G:W-1(V598_D-1) ] G:W-1(V598_D-1) Preds: [T:W-1(V597_D-1) ] Succ: [C:W-1(V599_D-1) ] C:W-1(V599_D-1) Preds: [G:W-1(V598_D-1) ] Succ: [A:W-1(V600_D-1) ] A:W-1(V600_D-1) Preds: [C:W-1(V599_D-1) ] Succ: [T:W-1(V601_D-1) ] T:W-1(V601_D-1) Preds: [A:W-1(V600_D-1) ] Succ: [C:W-1(V602_D-1) ] C:W-1(V602_D-1) Preds: [T:W-1(V601_D-1) ] Succ: [T:W-1(V603_D-1) ] T:W-1(V603_D-1) Preds: [C:W-1(V602_D-1) ] Succ: [T:W-1(V604_D-1) ] T:W-1(V604_D-1) Preds: [T:W-1(V603_D-1) ] Succ: [T:W-1(V605_D-1) ] T:W-1(V605_D-1) Preds: [T:W-1(V604_D-1) ] Succ: [G:W-1(V606_D-1) ] G:W-1(V606_D-1) Preds: [T:W-1(V605_D-1) ] Succ: [C:W-1(V607_D-1) ] C:W-1(V607_D-1) Preds: [G:W-1(V606_D-1) ] Succ: [C:W-1(V608_D-1) ] C:W-1(V608_D-1) Preds: [C:W-1(V607_D-1) ] Succ: [C:W-1(V609_D-1) ] C:W-1(V609_D-1) Preds: [C:W-1(V608_D-1) ] Succ: [A:W-1(V610_D-1) ] A:W-1(V610_D-1) Preds: [C:W-1(V609_D-1) ] Succ: [C:W-1(V611_D-1) ] C:W-1(V611_D-1) Preds: [A:W-1(V610_D-1) ] Succ: [A:W-1(V612_D-1) ] A:W-1(V612_D-1) Preds: [C:W-1(V611_D-1) ] Succ: [T:W-1(V613_D-1) ] T:W-1(V613_D-1) Preds: [A:W-1(V612_D-1) ] Succ: [G:W-1(V614_D-1) ] G:W-1(V614_D-1) Preds: [T:W-1(V613_D-1) ] Succ: [A:W-1(V615_D-1) ] A:W-1(V615_D-1) Preds: [G:W-1(V614_D-1) ] Succ: [T:W-1(V616_D-1) ] T:W-1(V616_D-1) Preds: [A:W-1(V615_D-1) ] Succ: [G:W-1(V617_D-1) ] G:W-1(V617_D-1) Preds: [T:W-1(V616_D-1) ] Succ: [C:W-1(V618_D-1) ] C:W-1(V618_D-1) Preds: [G:W-1(V617_D-1) ] Succ: [T:W-1(V619_D-1) ] T:W-1(V619_D-1) Preds: [C:W-1(V618_D-1) ] Succ: [T:W-1(V620_D-1) ] T:W-1(V620_D-1) Preds: [T:W-1(V619_D-1) ] Succ: [G:W-1(V621_D-1) ] G:W-1(V621_D-1) Preds: [T:W-1(V620_D-1) ] Succ: [G:W-1(V622_D-1) ] G:W-1(V622_D-1) Preds: [G:W-1(V621_D-1) ] Succ: [T:W-1(V623_D-1) ] T:W-1(V623_D-1) Preds: [G:W-1(V622_D-1) ] Succ: [T:W-1(V624_D-1) ] T:W-1(V624_D-1) Preds: [T:W-1(V623_D-1) ] Succ: [A:W-1(V625_D-1) ] A:W-1(V625_D-1) Preds: [T:W-1(V624_D-1) ] Succ: [A:W-1(V626_D-1) ] A:W-1(V626_D-1) Preds: [A:W-1(V625_D-1) ] Succ: [G:W-1(V627_D-1) ] G:W-1(V627_D-1) Preds: [A:W-1(V626_D-1) ] Succ: [A:W-1(V628_D-1) ] A:W-1(V628_D-1) Preds: [G:W-1(V627_D-1) ] Succ: [C:W-1(V629_D-1) ] C:W-1(V629_D-1) Preds: [A:W-1(V628_D-1) ] Succ: [A:W-1(V630_D-1) ] A:W-1(V630_D-1) Preds: [C:W-1(V629_D-1) ] Succ: [A:W-1(V631_D-1) ] A:W-1(V631_D-1) Preds: [A:W-1(V630_D-1) ] Succ: [G:W-1(V632_D-1) ] G:W-1(V632_D-1) Preds: [A:W-1(V631_D-1) ] Succ: [G:W-1(V633_D-1) ] G:W-1(V633_D-1) Preds: [G:W-1(V632_D-1) ] Succ: [G:W-1(V634_D-1) ] G:W-1(V634_D-1) Preds: [G:W-1(V633_D-1) ] Succ: [G:W-1(V635_D-1) ] G:W-1(V635_D-1) Preds: [G:W-1(V634_D-1) ] Succ: [T:W-1(V636_D-1) ] T:W-1(V636_D-1) Preds: [G:W-1(V635_D-1) ] Succ: [T:W-1(V637_D-1) ] T:W-1(V637_D-1) Preds: [T:W-1(V636_D-1) ] Succ: [A:W-1(V638_D-1) ] A:W-1(V638_D-1) Preds: [T:W-1(V637_D-1) ] Succ: [G:W-1(V639_D-1) ] G:W-1(V639_D-1) Preds: [A:W-1(V638_D-1) ] Succ: [T:W-1(V640_D-1) ] T:W-1(V640_D-1) Preds: [G:W-1(V639_D-1) ] Succ: [G:W-1(V641_D-1) ] G:W-1(V641_D-1) Preds: [T:W-1(V640_D-1) ] Succ: [A:W-1(V642_D-1) ] A:W-1(V642_D-1) Preds: [G:W-1(V641_D-1) ] Succ: [C:W-1(V643_D-1) ] C:W-1(V643_D-1) Preds: [A:W-1(V642_D-1) ] Succ: [A:W-1(V644_D-1) ] A:W-1(V644_D-1) Preds: [C:W-1(V643_D-1) ] Succ: [A:W-1(V645_D-1) ] A:W-1(V645_D-1) Preds: [A:W-1(V644_D-1) ] Succ: [A:W-1(V646_D-1) ] A:W-1(V646_D-1) Preds: [A:W-1(V645_D-1) ] Succ: [G:W-1(V647_D-1) ] G:W-1(V647_D-1) Preds: [A:W-1(V646_D-1) ] Succ: [T:W-1(V648_D-1) ] T:W-1(V648_D-1) Preds: [G:W-1(V647_D-1) ] Succ: [A:W-1(V649_D-1) ] A:W-1(V649_D-1) Preds: [T:W-1(V648_D-1) ] Succ: [A:W-1(V650_D-1) ] A:W-1(V650_D-1) Preds: [A:W-1(V649_D-1) ] Succ: [A:W-1(V651_D-1) ] A:W-1(V651_D-1) Preds: [A:W-1(V650_D-1) ] Succ: [G:W-1(V652_D-1) ] G:W-1(V652_D-1) Preds: [A:W-1(V651_D-1) ] Succ: [A:W-1(V653_D-1) ] A:W-1(V653_D-1) Preds: [G:W-1(V652_D-1) ] Succ: [G:W-1(V654_D-1) ] G:W-1(V654_D-1) Preds: [A:W-1(V653_D-1) ] Succ: [G:W-1(V655_D-1) ] G:W-1(V655_D-1) Preds: [G:W-1(V654_D-1) ] Succ: [A:W-1(V656_D-1) ] A:W-1(V656_D-1) Preds: [G:W-1(V655_D-1) ] Succ: [T:W-1(V657_D-1) ] T:W-1(V657_D-1) Preds: [A:W-1(V656_D-1) ] Succ: [G:W-1(V658_D-1) ] G:W-1(V658_D-1) Preds: [T:W-1(V657_D-1) ] Succ: [A:W-1(V659_D-1) ] A:W-1(V659_D-1) Preds: [G:W-1(V658_D-1) ] Succ: [C:W-1(V660_D-1) ] C:W-1(V660_D-1) Preds: [A:W-1(V659_D-1) ] Succ: [A:W-1(V661_D-1) ] A:W-1(V661_D-1) Preds: [C:W-1(V660_D-1) ] Succ: [G:W-1(V662_D-1) ] G:W-1(V662_D-1) Preds: [A:W-1(V661_D-1) ] Succ: [A:W-1(V663_D-1) ] A:W-1(V663_D-1) Preds: [G:W-1(V662_D-1) ] Succ: [C:W-1(V664_D-1) ] C:W-1(V664_D-1) Preds: [A:W-1(V663_D-1) ] Succ: [T:W-1(V665_D-1) ] T:W-1(V665_D-1) Preds: [C:W-1(V664_D-1) ] Succ: [C:W-1(V666_D-1) ] C:W-1(V666_D-1) Preds: [T:W-1(V665_D-1) ] Succ: [T:W-1(V667_D-1) ] T:W-1(V667_D-1) Preds: [C:W-1(V666_D-1) ] Succ: [C:W-1(V668_D-1) ] C:W-1(V668_D-1) Preds: [T:W-1(V667_D-1) ] Succ: [T:W-1(V669_D-1) ] T:W-1(V669_D-1) Preds: [C:W-1(V668_D-1) ] Succ: [A:W-1(V670_D-1) ] A:W-1(V670_D-1) Preds: [T:W-1(V669_D-1) ] Succ: [A:W-1(V671_D-1) ] A:W-1(V671_D-1) Preds: [A:W-1(V670_D-1) ] Succ: [G:W-1(V672_D-1) ] G:W-1(V672_D-1) Preds: [A:W-1(V671_D-1) ] Succ: [G:W-1(V673_D-1) ] G:W-1(V673_D-1) Preds: [G:W-1(V672_D-1) ] Succ: [G:W-1(V674_D-1) ] G:W-1(V674_D-1) Preds: [G:W-1(V673_D-1) ] Succ: [A:W-1(V675_D-1) ] A:W-1(V675_D-1) Preds: [G:W-1(V674_D-1) ] Succ: [C:W-1(V676_D-1) ] C:W-1(V676_D-1) Preds: [A:W-1(V675_D-1) ] Succ: [A:W-1(V677_D-1) ] A:W-1(V677_D-1) Preds: [C:W-1(V676_D-1) ] Succ: [T:W-1(V678_D-1) ] T:W-1(V678_D-1) Preds: [A:W-1(V677_D-1) ] Succ: [A:W-1(V679_D-1) ] A:W-1(V679_D-1) Preds: [T:W-1(V678_D-1) ] Succ: [T:W-1(V680_D-1) ] T:W-1(V680_D-1) Preds: [A:W-1(V679_D-1) ] Succ: [G:W-1(V681_D-1) ] G:W-1(V681_D-1) Preds: [T:W-1(V680_D-1) ] Succ: [G:W-1(V682_D-1) ] G:W-1(V682_D-1) Preds: [G:W-1(V681_D-1) ] Succ: [G:W-1(V683_D-1) ] G:W-1(V683_D-1) Preds: [G:W-1(V682_D-1) ] Succ: [A:W-1(V684_D-1) ] A:W-1(V684_D-1) Preds: [G:W-1(V683_D-1) ] Succ: [G:W-1(V685_D-1) ] G:W-1(V685_D-1) Preds: [A:W-1(V684_D-1) ] Succ: [C:W-1(V686_D-1) ] C:W-1(V686_D-1) Preds: [G:W-1(V685_D-1) ] Succ: [T:W-1(V687_D-1) ] T:W-1(V687_D-1) Preds: [C:W-1(V686_D-1) ] Succ: [A:W-1(V688_D-1) ] A:W-1(V688_D-1) Preds: [T:W-1(V687_D-1) ] Succ: [C:W-1(V689_D-1) ] C:W-1(V689_D-1) Preds: [A:W-1(V688_D-1) ] Succ: [A:W-1(V690_D-1) ] A:W-1(V690_D-1) Preds: [C:W-1(V689_D-1) ] Succ: [T:W-1(V691_D-1) ] T:W-1(V691_D-1) Preds: [A:W-1(V690_D-1) ] Succ: [A:W-1(V692_D-1) ] A:W-1(V692_D-1) Preds: [T:W-1(V691_D-1) ] Succ: [G:W-1(V693_D-1) ] G:W-1(V693_D-1) Preds: [A:W-1(V692_D-1) ] Succ: [C:W-1(V694_D-1) ] C:W-1(V694_D-1) Preds: [G:W-1(V693_D-1) ] Succ: [C:W-1(V695_D-1) ] C:W-1(V695_D-1) Preds: [C:W-1(V694_D-1) ] Succ: [A:W-1(V696_D-1) ] A:W-1(V696_D-1) Preds: [C:W-1(V695_D-1) ] Succ: [G:W-1(V697_D-1) ] G:W-1(V697_D-1) Preds: [A:W-1(V696_D-1) ] Succ: [C:W-1(V698_D-1) ] C:W-1(V698_D-1) Preds: [G:W-1(V697_D-1) ] Succ: [C:W-1(V699_D-1) ] C:W-1(V699_D-1) Preds: [C:W-1(V698_D-1) ] Succ: [C:W-1(V700_D-1) ] C:W-1(V700_D-1) Preds: [C:W-1(V699_D-1) ] Succ: [C:W-1(V701_D-1) ] C:W-1(V701_D-1) Preds: [C:W-1(V700_D-1) ] Succ: [G:W-1(V702_D-1) ] G:W-1(V702_D-1) Preds: [C:W-1(V701_D-1) ] Succ: [T:W-1(V703_D-1) ] T:W-1(V703_D-1) Preds: [G:W-1(V702_D-1) ] Succ: [G:W-1(V704_D-1) ] G:W-1(V704_D-1) Preds: [T:W-1(V703_D-1) ] Succ: [G:W-1(V705_D-1) ] G:W-1(V705_D-1) Preds: [G:W-1(V704_D-1) ] Succ: [A:W-1(V706_D-1) ] A:W-1(V706_D-1) Preds: [G:W-1(V705_D-1) ] Succ: [G:W-1(V707_D-1) ] G:W-1(V707_D-1) Preds: [A:W-1(V706_D-1) ] Succ: [G:W-1(V708_D-1) ] G:W-1(V708_D-1) Preds: [G:W-1(V707_D-1) ] Succ: [G:W-1(V709_D-1) ] G:W-1(V709_D-1) Preds: [G:W-1(V708_D-1) ] Succ: [A:W-1(V710_D-1) ] A:W-1(V710_D-1) Preds: [G:W-1(V709_D-1) ] Succ: [G:W-1(V711_D-1) ] G:W-1(V711_D-1) Preds: [A:W-1(V710_D-1) ] Succ: [C:W-1(V712_D-1) ] C:W-1(V712_D-1) Preds: [G:W-1(V711_D-1) ] Succ: [C:W-1(V713_D-1) ] C:W-1(V713_D-1) Preds: [C:W-1(V712_D-1) ] Succ: [A:W-1(V714_D-1) ] A:W-1(V714_D-1) Preds: [C:W-1(V713_D-1) ] Succ: [C:W-1(V715_D-1) ] C:W-1(V715_D-1) Preds: [A:W-1(V714_D-1) ] Succ: [C:W-1(V716_D-1) ] C:W-1(V716_D-1) Preds: [C:W-1(V715_D-1) ] Succ: [A:W-1(V717_D-1) ] A:W-1(V717_D-1) Preds: [C:W-1(V716_D-1) C:W-1(V812_D-1) ] Succ: [G:W-1(V718_D-1) ] G:W-1(V718_D-1) Preds: [A:W-1(V717_D-1) ] Succ: [C:W-1(V719_D-1) ] C:W-1(V719_D-1) Preds: [G:W-1(V718_D-1) ] Succ: [C:W-1(V720_D-1) ] C:W-1(V720_D-1) Preds: [C:W-1(V719_D-1) ] Succ: [A:W-1(V721_D-1) ] A:W-1(V721_D-1) Preds: [C:W-1(V720_D-1) ] Succ: [C:W-1(V722_D-1) ] C:W-1(V722_D-1) Preds: [A:W-1(V721_D-1) ] Succ: [A:W-1(V723_D-1) ] A:W-1(V723_D-1) Preds: [C:W-1(V722_D-1) ] Succ: [G:W-1(V724_D-1) ] G:W-1(V724_D-1) Preds: [A:W-1(V723_D-1) ] Succ: [G:W-1(V725_D-1) ] G:W-1(V725_D-1) Preds: [G:W-1(V724_D-1) ] Succ: [T:W-1(V726_D-1) ] T:W-1(V726_D-1) Preds: [G:W-1(V725_D-1) ] Succ: [A:W-1(V727_D-1) ] A:W-1(V727_D-1) Preds: [T:W-1(V726_D-1) ] Succ: [C:W-1(V728_D-1) ] C:W-1(V728_D-1) Preds: [A:W-1(V727_D-1) ] Succ: [C:W-1(V729_D-1) ] C:W-1(V729_D-1) Preds: [C:W-1(V728_D-1) ] Succ: [T:W-1(V730_D-1) ] T:W-1(V730_D-1) Preds: [C:W-1(V729_D-1) ] Succ: [G:W-1(V731_D-1) ] G:W-1(V731_D-1) Preds: [T:W-1(V730_D-1) ] Succ: [A:W-1(V732_D-1) ] A:W-1(V732_D-1) Preds: [G:W-1(V731_D-1) ] Succ: [T:W-1(V733_D-1) ] T:W-1(V733_D-1) Preds: [A:W-1(V732_D-1) ] Succ: [G:W-1(V734_D-1) ] G:W-1(V734_D-1) Preds: [T:W-1(V733_D-1) ] Succ: [G:W-1(V735_D-1) ] G:W-1(V735_D-1) Preds: [G:W-1(V734_D-1) ] Succ: [A:W-1(V736_D-1) ] A:W-1(V736_D-1) Preds: [G:W-1(V735_D-1) ] Succ: [A:W-1(V737_D-1) ] A:W-1(V737_D-1) Preds: [A:W-1(V736_D-1) ] Succ: [A:W-1(V738_D-1) ] A:W-1(V738_D-1) Preds: [A:W-1(V737_D-1) ] Succ: [T:W-1(V739_D-1) ] T:W-1(V739_D-1) Preds: [A:W-1(V738_D-1) ] Succ: [G:W-1(V740_D-1) ] G:W-1(V740_D-1) Preds: [T:W-1(V739_D-1) ] Succ: [C:W-1(V741_D-1) ] C:W-1(V741_D-1) Preds: [G:W-1(V740_D-1) ] Succ: [C:W-1(V742_D-1) ] C:W-1(V742_D-1) Preds: [C:W-1(V741_D-1) ] Succ: [G:W-1(V743_D-1) ] G:W-1(V743_D-1) Preds: [C:W-1(V742_D-1) ] Succ: [G:W-1(V744_D-1) ] G:W-1(V744_D-1) Preds: [G:W-1(V743_D-1) ] Succ: [C:W-1(V745_D-1) ] C:W-1(V745_D-1) Preds: [G:W-1(V744_D-1) ] Succ: [T:W-1(V746_D-1) ] T:W-1(V746_D-1) Preds: [C:W-1(V745_D-1) ] Succ: [C:W-1(V747_D-1) ] C:W-1(V747_D-1) Preds: [T:W-1(V746_D-1) ] Succ: [A:W-1(V748_D-1) ] A:W-1(V748_D-1) Preds: [C:W-1(V747_D-1) ] Succ: [C:W-1(V749_D-1) ] C:W-1(V749_D-1) Preds: [A:W-1(V748_D-1) ] Succ: [T:W-1(V750_D-1) ] T:W-1(V750_D-1) Preds: [C:W-1(V749_D-1) ] Succ: [T:W-1(V751_D-1) ] T:W-1(V751_D-1) Preds: [T:W-1(V750_D-1) ] Succ: [C:W-1(V752_D-1) ] C:W-1(V752_D-1) Preds: [T:W-1(V751_D-1) ] Succ: [C:W-1(V753_D-1) ] C:W-1(V753_D-1) Preds: [C:W-1(V752_D-1) ] Succ: [T:W-1(V754_D-1) ] T:W-1(V754_D-1) Preds: [C:W-1(V753_D-1) ] Succ: [G:W-1(V755_D-1) ] G:W-1(V755_D-1) Preds: [T:W-1(V754_D-1) ] Succ: [T:W-1(V756_D-1) ] T:W-1(V756_D-1) Preds: [G:W-1(V755_D-1) ] Succ: [G:W-1(V757_D-1) ] G:W-1(V757_D-1) Preds: [T:W-1(V756_D-1) ] Succ: [A:W-1(V758_D-1) ] A:W-1(V758_D-1) Preds: [G:W-1(V757_D-1) ] Succ: [] GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) Preds: [] Succ: [A:W-1(V787_D-1) ] A:W-1(V787_D-1) Preds: [GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) ] Succ: [A:W-1(V788_D-1) ] A:W-1(V788_D-1) Preds: [A:W-1(V787_D-1) ] Succ: [C:W-1(V789_D-1) ] C:W-1(V789_D-1) Preds: [A:W-1(V788_D-1) ] Succ: [C:W-1(V790_D-1) ] C:W-1(V790_D-1) Preds: [C:W-1(V789_D-1) ] Succ: [C:W-1(V791_D-1) ] C:W-1(V791_D-1) Preds: [C:W-1(V790_D-1) ] Succ: [A:W-1(V792_D-1) ] A:W-1(V792_D-1) Preds: [C:W-1(V791_D-1) ] Succ: [G:W-1(V793_D-1) ] G:W-1(V793_D-1) Preds: [A:W-1(V792_D-1) ] Succ: [C:W-1(V794_D-1) ] C:W-1(V794_D-1) Preds: [G:W-1(V793_D-1) ] Succ: [C:W-1(V795_D-1) ] C:W-1(V795_D-1) Preds: [C:W-1(V794_D-1) ] Succ: [C:W-1(V796_D-1) ] C:W-1(V796_D-1) Preds: [C:W-1(V795_D-1) ] Succ: [C:W-1(V797_D-1) ] C:W-1(V797_D-1) Preds: [C:W-1(V796_D-1) ] Succ: [G:W-1(V798_D-1) ] G:W-1(V798_D-1) Preds: [C:W-1(V797_D-1) ] Succ: [T:W-1(V799_D-1) ] T:W-1(V799_D-1) Preds: [G:W-1(V798_D-1) ] Succ: [G:W-1(V800_D-1) ] G:W-1(V800_D-1) Preds: [T:W-1(V799_D-1) ] Succ: [G:W-1(V801_D-1) ] G:W-1(V801_D-1) Preds: [G:W-1(V800_D-1) ] Succ: [A:W-1(V802_D-1) ] A:W-1(V802_D-1) Preds: [G:W-1(V801_D-1) ] Succ: [G:W-1(V803_D-1) ] G:W-1(V803_D-1) Preds: [A:W-1(V802_D-1) ] Succ: [G:W-1(V804_D-1) ] G:W-1(V804_D-1) Preds: [G:W-1(V803_D-1) ] Succ: [G:W-1(V805_D-1) ] G:W-1(V805_D-1) Preds: [G:W-1(V804_D-1) ] Succ: [A:W-1(V806_D-1) ] A:W-1(V806_D-1) Preds: [G:W-1(V805_D-1) ] Succ: [G:W-1(V807_D-1) ] G:W-1(V807_D-1) Preds: [A:W-1(V806_D-1) ] Succ: [C:W-1(V808_D-1) ] C:W-1(V808_D-1) Preds: [G:W-1(V807_D-1) ] Succ: [C:W-1(V809_D-1) ] C:W-1(V809_D-1) Preds: [C:W-1(V808_D-1) ] Succ: [A:W-1(V810_D-1) ] A:W-1(V810_D-1) Preds: [C:W-1(V809_D-1) ] Succ: [C:W-1(V811_D-1) ] C:W-1(V811_D-1) Preds: [A:W-1(V810_D-1) ] Succ: [C:W-1(V812_D-1) ] C:W-1(V812_D-1) Preds: [C:W-1(V811_D-1) ] Succ: [A:W-1(V717_D-1) ] C:W-1(V813_D-1) Preds: [T:W-1(V524_D-1) ] Succ: [A:W-1(V814_D-1) ] A:W-1(V814_D-1) Preds: [C:W-1(V813_D-1) ] Succ: [G:W-1(V815_D-1) ] G:W-1(V815_D-1) Preds: [A:W-1(V814_D-1) ] Succ: [C:W-1(V816_D-1) ] C:W-1(V816_D-1) Preds: [G:W-1(V815_D-1) ] Succ: [A:W-1(V817_D-1) ] A:W-1(V817_D-1) Preds: [C:W-1(V816_D-1) ] Succ: [C:W-1(V818_D-1) ] C:W-1(V818_D-1) Preds: [A:W-1(V817_D-1) ] Succ: [T:W-1(V819_D-1) ] T:W-1(V819_D-1) Preds: [C:W-1(V818_D-1) ] Succ: [C:W-1(V820_D-1) ] C:W-1(V820_D-1) Preds: [T:W-1(V819_D-1) ] Succ: [T:W-1(V821_D-1) ] T:W-1(V821_D-1) Preds: [C:W-1(V820_D-1) ] Succ: [G:W-1(V822_D-1) ] G:W-1(V822_D-1) Preds: [T:W-1(V821_D-1) ] Succ: [A:W-1(V823_D-1) ] A:W-1(V823_D-1) Preds: [G:W-1(V822_D-1) ] Succ: [A:W-1(V824_D-1) ] A:W-1(V824_D-1) Preds: [A:W-1(V823_D-1) ] Succ: [C:W-1(V825_D-1) ] C:W-1(V825_D-1) Preds: [A:W-1(V824_D-1) ] Succ: [C:W-1(V826_D-1) ] C:W-1(V826_D-1) Preds: [C:W-1(V825_D-1) ] Succ: [C:W-1(V827_D-1) ] C:W-1(V827_D-1) Preds: [C:W-1(V826_D-1) ] Succ: [T:W-1(V828_D-1) ] T:W-1(V828_D-1) Preds: [C:W-1(V827_D-1) ] Succ: [G:W-1(V829_D-1) ] G:W-1(V829_D-1) Preds: [T:W-1(V828_D-1) ] Succ: [T:W-1(V830_D-1) ] T:W-1(V830_D-1) Preds: [G:W-1(V829_D-1) ] Succ: [G:W-1(V831_D-1) ] G:W-1(V831_D-1) Preds: [T:W-1(V830_D-1) ] Succ: [A:W-1(V832_D-1) ] A:W-1(V832_D-1) Preds: [G:W-1(V831_D-1) ] Succ: [G:W-1(V833_D-1) ] G:W-1(V833_D-1) Preds: [A:W-1(V832_D-1) ] Succ: [G:W-1(V834_D-1) ] G:W-1(V834_D-1) Preds: [G:W-1(V833_D-1) ] Succ: [C:W-1(V835_D-1) ] C:W-1(V835_D-1) Preds: [G:W-1(V834_D-1) ] Succ: [A:W-1(V836_D-1) ] A:W-1(V836_D-1) Preds: [C:W-1(V835_D-1) ] Succ: [A:W-1(V549_D-1) ] G:W-1(V885_D-1) Preds: [G:W-1(V415_D-1) ] Succ: [C:W-1(V886_D-1) ] C:W-1(V886_D-1) Preds: [G:W-1(V885_D-1) ] Succ: [T:W-1(V887_D-1) ] T:W-1(V887_D-1) Preds: [C:W-1(V886_D-1) ] Succ: [C:W-1(V888_D-1) ] C:W-1(V888_D-1) Preds: [T:W-1(V887_D-1) ] Succ: [A:W-1(V889_D-1) ] A:W-1(V889_D-1) Preds: [C:W-1(V888_D-1) ] Succ: [T:W-1(V890_D-1) ] T:W-1(V890_D-1) Preds: [A:W-1(V889_D-1) ] Succ: [C:W-1(V891_D-1) ] C:W-1(V891_D-1) Preds: [T:W-1(V890_D-1) ] Succ: [A:W-1(V892_D-1) ] A:W-1(V892_D-1) Preds: [C:W-1(V891_D-1) ] Succ: [G:W-1(V893_D-1) ] G:W-1(V893_D-1) Preds: [A:W-1(V892_D-1) ] Succ: [C:W-1(V894_D-1) ] C:W-1(V894_D-1) Preds: [G:W-1(V893_D-1) ] Succ: [A:W-1(V895_D-1) ] A:W-1(V895_D-1) Preds: [C:W-1(V894_D-1) ] Succ: [A:W-1(V896_D-1) ] A:W-1(V896_D-1) Preds: [A:W-1(V895_D-1) ] Succ: [G:W-1(V897_D-1) ] G:W-1(V897_D-1) Preds: [A:W-1(V896_D-1) ] Succ: [A:W-1(V898_D-1) ] A:W-1(V898_D-1) Preds: [G:W-1(V897_D-1) ] Succ: [A:W-1(V899_D-1) ] A:W-1(V899_D-1) Preds: [A:W-1(V898_D-1) ] Succ: [G:W-1(V900_D-1) ] G:W-1(V900_D-1) Preds: [A:W-1(V899_D-1) ] Succ: [A:W-1(V901_D-1) ] A:W-1(V901_D-1) Preds: [G:W-1(V900_D-1) ] Succ: [A:W-1(V902_D-1) ] A:W-1(V902_D-1) Preds: [A:W-1(V901_D-1) ] Succ: [A:W-1(V903_D-1) ] A:W-1(V903_D-1) Preds: [A:W-1(V902_D-1) ] Succ: [T:W-1(V904_D-1) ] T:W-1(V904_D-1) Preds: [A:W-1(V903_D-1) ] Succ: [C:W-1(V905_D-1) ] C:W-1(V905_D-1) Preds: [T:W-1(V904_D-1) ] Succ: [T:W-1(V906_D-1) ] T:W-1(V906_D-1) Preds: [C:W-1(V905_D-1) ] Succ: [T:W-1(V907_D-1) ] T:W-1(V907_D-1) Preds: [T:W-1(V906_D-1) ] Succ: [T:W-1(V908_D-1) ] T:W-1(V908_D-1) Preds: [T:W-1(V907_D-1) ] Succ: [C:W-1(V440_D-1) ] AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) Preds: [] Succ: [C:W-1(V946_D-1) ] C:W-1(V946_D-1) Preds: [AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) ] Succ: [C:W-1(V947_D-1) ] C:W-1(V947_D-1) Preds: [C:W-1(V946_D-1) ] Succ: [T:W-1(V948_D-1) ] T:W-1(V948_D-1) Preds: [C:W-1(V947_D-1) ] Succ: [C:W-1(V949_D-1) ] C:W-1(V949_D-1) Preds: [T:W-1(V948_D-1) ] Succ: [A:W-1(V950_D-1) ] A:W-1(V950_D-1) Preds: [C:W-1(V949_D-1) ] Succ: [T:W-1(V951_D-1) ] T:W-1(V951_D-1) Preds: [A:W-1(V950_D-1) ] Succ: [C:W-1(V952_D-1) ] C:W-1(V952_D-1) Preds: [T:W-1(V951_D-1) ] Succ: [A:W-1(V953_D-1) ] A:W-1(V953_D-1) Preds: [C:W-1(V952_D-1) ] Succ: [G:W-1(V954_D-1) ] G:W-1(V954_D-1) Preds: [A:W-1(V953_D-1) ] Succ: [C:W-1(V955_D-1) ] C:W-1(V955_D-1) Preds: [G:W-1(V954_D-1) ] Succ: [A:W-1(V956_D-1) ] A:W-1(V956_D-1) Preds: [C:W-1(V955_D-1) ] Succ: [G:W-1(V957_D-1) ] G:W-1(V957_D-1) Preds: [A:W-1(V956_D-1) ] Succ: [G:W-1(V958_D-1) ] G:W-1(V958_D-1) Preds: [G:W-1(V957_D-1) ] Succ: [A:W-1(V959_D-1) ] A:W-1(V959_D-1) Preds: [G:W-1(V958_D-1) ] Succ: [A:W-1(V960_D-1) ] A:W-1(V960_D-1) Preds: [A:W-1(V959_D-1) ] Succ: [G:W-1(V961_D-1) ] G:W-1(V961_D-1) Preds: [A:W-1(V960_D-1) ] Succ: [A:W-1(V962_D-1) ] A:W-1(V962_D-1) Preds: [G:W-1(V961_D-1) ] Succ: [A:W-1(V963_D-1) ] A:W-1(V963_D-1) Preds: [A:W-1(V962_D-1) ] Succ: [A:W-1(V964_D-1) ] A:W-1(V964_D-1) Preds: [A:W-1(V963_D-1) ] Succ: [T:W-1(V965_D-1) ] T:W-1(V965_D-1) Preds: [A:W-1(V964_D-1) ] Succ: [C:W-1(V966_D-1) ] C:W-1(V966_D-1) Preds: [T:W-1(V965_D-1) ] Succ: [T:W-1(V967_D-1) ] T:W-1(V967_D-1) Preds: [C:W-1(V966_D-1) ] Succ: [T:W-1(V968_D-1) ] T:W-1(V968_D-1) Preds: [T:W-1(V967_D-1) ] Succ: [T:W-1(V969_D-1) ] T:W-1(V969_D-1) Preds: [T:W-1(V968_D-1) ] Succ: [C:W-1(V970_D-1) ] C:W-1(V970_D-1) Preds: [T:W-1(V969_D-1) ] Succ: [T:W-1(V971_D-1) ] T:W-1(V971_D-1) Preds: [C:W-1(V970_D-1) ] Succ: [T:W-1(V972_D-1) ] T:W-1(V972_D-1) Preds: [T:W-1(V971_D-1) ] Succ: [T:W-1(V973_D-1) ] T:W-1(V973_D-1) Preds: [T:W-1(V972_D-1) ] Succ: [C:W-1(V974_D-1) ] C:W-1(V974_D-1) Preds: [T:W-1(V973_D-1) ] Succ: [C:W-1(V975_D-1) ] C:W-1(V975_D-1) Preds: [C:W-1(V974_D-1) ] Succ: [A:W-1(V976_D-1) ] A:W-1(V976_D-1) Preds: [C:W-1(V975_D-1) ] Succ: [A:W-1(V977_D-1) ] A:W-1(V977_D-1) Preds: [A:W-1(V976_D-1) ] Succ: [G:W-1(V978_D-1) ] G:W-1(V978_D-1) Preds: [A:W-1(V977_D-1) ] Succ: [T:W-1(V979_D-1) ] T:W-1(V979_D-1) Preds: [G:W-1(V978_D-1) ] Succ: [A:W-1(V980_D-1) ] A:W-1(V980_D-1) Preds: [T:W-1(V979_D-1) ] Succ: [G:W-1(V451_D-1) ] compactLinearPaths() SECTION ================= COMPACTING THE GRAPH ================= Found potential edge: Edge(380->381,w:2.0) between GGCCACACGATGGCTTATCACGTC:W0(V380_D-1) and C:W-1(V381_D-1) removing vertex C:W-1(V381_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) Want to move edge Edge(381->382,w:2.0)(C:W-1(V381_D-1)->A:W-1(V382_D-1)) to (GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1)->A:W-1(V382_D-1) adding edge: GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) to A:W-1(V382_D-1) removing edge Edge(381->382,w:2.0)(C:W-1(V381_D-1)->A:W-1(V382_D-1)) removing edge Edge(380->381,w:2.0)(GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1)->C:W-1(V381_D-1)) Found potential edge: Edge(380->382,w:2.0) between GGCCACACGATGGCTTATCACGTCC:W0(V380_D-1) and A:W-1(V382_D-1) removing vertex A:W-1(V382_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) Want to move edge Edge(382->383,w:2.0)(A:W-1(V382_D-1)->C:W-1(V383_D-1)) to (GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1)->C:W-1(V383_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) to C:W-1(V383_D-1) removing edge Edge(382->383,w:2.0)(A:W-1(V382_D-1)->C:W-1(V383_D-1)) removing edge Edge(380->382,w:2.0)(GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1)->A:W-1(V382_D-1)) Found potential edge: Edge(380->383,w:2.0) between GGCCACACGATGGCTTATCACGTCCA:W0(V380_D-1) and C:W-1(V383_D-1) removing vertex C:W-1(V383_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) Want to move edge Edge(383->384,w:2.0)(C:W-1(V383_D-1)->A:W-1(V384_D-1)) to (GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1)->A:W-1(V384_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) to A:W-1(V384_D-1) removing edge Edge(383->384,w:2.0)(C:W-1(V383_D-1)->A:W-1(V384_D-1)) removing edge Edge(380->383,w:2.0)(GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1)->C:W-1(V383_D-1)) Found potential edge: Edge(380->384,w:2.0) between GGCCACACGATGGCTTATCACGTCCAC:W0(V380_D-1) and A:W-1(V384_D-1) removing vertex A:W-1(V384_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) Want to move edge Edge(384->385,w:2.0)(A:W-1(V384_D-1)->T:W-1(V385_D-1)) to (GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1)->T:W-1(V385_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) to T:W-1(V385_D-1) removing edge Edge(384->385,w:2.0)(A:W-1(V384_D-1)->T:W-1(V385_D-1)) removing edge Edge(380->384,w:2.0)(GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1)->A:W-1(V384_D-1)) Found potential edge: Edge(380->385,w:2.0) between GGCCACACGATGGCTTATCACGTCCACA:W0(V380_D-1) and T:W-1(V385_D-1) removing vertex T:W-1(V385_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) Want to move edge Edge(385->386,w:2.0)(T:W-1(V385_D-1)->T:W-1(V386_D-1)) to (GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1)->T:W-1(V386_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) to T:W-1(V386_D-1) removing edge Edge(385->386,w:2.0)(T:W-1(V385_D-1)->T:W-1(V386_D-1)) removing edge Edge(380->385,w:2.0)(GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1)->T:W-1(V385_D-1)) Found potential edge: Edge(380->386,w:2.0) between GGCCACACGATGGCTTATCACGTCCACAT:W0(V380_D-1) and T:W-1(V386_D-1) removing vertex T:W-1(V386_D-1) was concatenated into GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) Want to move edge Edge(386->387,w:2.0)(T:W-1(V386_D-1)->T:W-1(V387_D-1)) to (GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1)->T:W-1(V387_D-1) adding edge: GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) to T:W-1(V387_D-1) removing edge Edge(386->387,w:2.0)(T:W-1(V386_D-1)->T:W-1(V387_D-1)) removing edge Edge(380->386,w:2.0)(GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1)->T:W-1(V386_D-1)) Found potential edge: Edge(380->387,w:2.0) between GGCCACACGATGGCTTATCACGTCCACATT:W0(V380_D-1) and T:W-1(V387_D-1) removing vertex T:W-1(V387_D-1) was concatenated into GGCCACACGA...GTCCACATTT:W0(V380_D-1) Want to move edge Edge(387->388,w:2.0)(T:W-1(V387_D-1)->C:W-1(V388_D-1)) to (GGCCACACGA...GTCCACATTT:W0(V380_D-1)->C:W-1(V388_D-1) adding edge: GGCCACACGA...GTCCACATTT:W0(V380_D-1) to C:W-1(V388_D-1) removing edge Edge(387->388,w:2.0)(T:W-1(V387_D-1)->C:W-1(V388_D-1)) removing edge Edge(380->387,w:2.0)(GGCCACACGA...GTCCACATTT:W0(V380_D-1)->T:W-1(V387_D-1)) Found potential edge: Edge(380->388,w:2.0) between GGCCACACGA...GTCCACATTT:W0(V380_D-1) and C:W-1(V388_D-1) removing vertex C:W-1(V388_D-1) was concatenated into GGCCACACGA...TCCACATTTC:W1(V380_D-1) Want to move edge Edge(388->389,w:2.0)(C:W-1(V388_D-1)->T:W-1(V389_D-1)) to (GGCCACACGA...TCCACATTTC:W1(V380_D-1)->T:W-1(V389_D-1) adding edge: GGCCACACGA...TCCACATTTC:W1(V380_D-1) to T:W-1(V389_D-1) removing edge Edge(388->389,w:2.0)(C:W-1(V388_D-1)->T:W-1(V389_D-1)) removing edge Edge(380->388,w:2.0)(GGCCACACGA...TCCACATTTC:W1(V380_D-1)->C:W-1(V388_D-1)) Found potential edge: Edge(380->389,w:2.0) between GGCCACACGA...TCCACATTTC:W1(V380_D-1) and T:W-1(V389_D-1) removing vertex T:W-1(V389_D-1) was concatenated into GGCCACACGA...CCACATTTCT:W1(V380_D-1) Want to move edge Edge(389->390,w:2.0)(T:W-1(V389_D-1)->A:W-1(V390_D-1)) to (GGCCACACGA...CCACATTTCT:W1(V380_D-1)->A:W-1(V390_D-1) adding edge: GGCCACACGA...CCACATTTCT:W1(V380_D-1) to A:W-1(V390_D-1) removing edge Edge(389->390,w:2.0)(T:W-1(V389_D-1)->A:W-1(V390_D-1)) removing edge Edge(380->389,w:2.0)(GGCCACACGA...CCACATTTCT:W1(V380_D-1)->T:W-1(V389_D-1)) Found potential edge: Edge(380->390,w:2.0) between GGCCACACGA...CCACATTTCT:W1(V380_D-1) and A:W-1(V390_D-1) removing vertex A:W-1(V390_D-1) was concatenated into GGCCACACGA...CACATTTCTA:W1(V380_D-1) Want to move edge Edge(390->391,w:2.0)(A:W-1(V390_D-1)->C:W-1(V391_D-1)) to (GGCCACACGA...CACATTTCTA:W1(V380_D-1)->C:W-1(V391_D-1) adding edge: GGCCACACGA...CACATTTCTA:W1(V380_D-1) to C:W-1(V391_D-1) removing edge Edge(390->391,w:2.0)(A:W-1(V390_D-1)->C:W-1(V391_D-1)) removing edge Edge(380->390,w:2.0)(GGCCACACGA...CACATTTCTA:W1(V380_D-1)->A:W-1(V390_D-1)) Found potential edge: Edge(380->391,w:2.0) between GGCCACACGA...CACATTTCTA:W1(V380_D-1) and C:W-1(V391_D-1) removing vertex C:W-1(V391_D-1) was concatenated into GGCCACACGA...ACATTTCTAC:W1(V380_D-1) Want to move edge Edge(391->392,w:2.0)(C:W-1(V391_D-1)->T:W-1(V392_D-1)) to (GGCCACACGA...ACATTTCTAC:W1(V380_D-1)->T:W-1(V392_D-1) adding edge: GGCCACACGA...ACATTTCTAC:W1(V380_D-1) to T:W-1(V392_D-1) removing edge Edge(391->392,w:2.0)(C:W-1(V391_D-1)->T:W-1(V392_D-1)) removing edge Edge(380->391,w:2.0)(GGCCACACGA...ACATTTCTAC:W1(V380_D-1)->C:W-1(V391_D-1)) Found potential edge: Edge(380->392,w:2.0) between GGCCACACGA...ACATTTCTAC:W1(V380_D-1) and T:W-1(V392_D-1) removing vertex T:W-1(V392_D-1) was concatenated into GGCCACACGA...CATTTCTACT:W1(V380_D-1) Want to move edge Edge(392->393,w:2.0)(T:W-1(V392_D-1)->G:W-1(V393_D-1)) to (GGCCACACGA...CATTTCTACT:W1(V380_D-1)->G:W-1(V393_D-1) adding edge: GGCCACACGA...CATTTCTACT:W1(V380_D-1) to G:W-1(V393_D-1) removing edge Edge(392->393,w:2.0)(T:W-1(V392_D-1)->G:W-1(V393_D-1)) removing edge Edge(380->392,w:2.0)(GGCCACACGA...CATTTCTACT:W1(V380_D-1)->T:W-1(V392_D-1)) Found potential edge: Edge(380->393,w:2.0) between GGCCACACGA...CATTTCTACT:W1(V380_D-1) and G:W-1(V393_D-1) removing vertex G:W-1(V393_D-1) was concatenated into GGCCACACGA...ATTTCTACTG:W1(V380_D-1) Want to move edge Edge(393->394,w:2.0)(G:W-1(V393_D-1)->G:W-1(V394_D-1)) to (GGCCACACGA...ATTTCTACTG:W1(V380_D-1)->G:W-1(V394_D-1) adding edge: GGCCACACGA...ATTTCTACTG:W1(V380_D-1) to G:W-1(V394_D-1) removing edge Edge(393->394,w:2.0)(G:W-1(V393_D-1)->G:W-1(V394_D-1)) removing edge Edge(380->393,w:2.0)(GGCCACACGA...ATTTCTACTG:W1(V380_D-1)->G:W-1(V393_D-1)) Found potential edge: Edge(380->394,w:2.0) between GGCCACACGA...ATTTCTACTG:W1(V380_D-1) and G:W-1(V394_D-1) removing vertex G:W-1(V394_D-1) was concatenated into GGCCACACGA...TTTCTACTGG:W1(V380_D-1) Want to move edge Edge(394->395,w:2.0)(G:W-1(V394_D-1)->C:W-1(V395_D-1)) to (GGCCACACGA...TTTCTACTGG:W1(V380_D-1)->C:W-1(V395_D-1) adding edge: GGCCACACGA...TTTCTACTGG:W1(V380_D-1) to C:W-1(V395_D-1) removing edge Edge(394->395,w:2.0)(G:W-1(V394_D-1)->C:W-1(V395_D-1)) removing edge Edge(380->394,w:2.0)(GGCCACACGA...TTTCTACTGG:W1(V380_D-1)->G:W-1(V394_D-1)) Found potential edge: Edge(380->395,w:2.0) between GGCCACACGA...TTTCTACTGG:W1(V380_D-1) and C:W-1(V395_D-1) removing vertex C:W-1(V395_D-1) was concatenated into GGCCACACGA...TTCTACTGGC:W1(V380_D-1) Want to move edge Edge(395->396,w:2.0)(C:W-1(V395_D-1)->T:W-1(V396_D-1)) to (GGCCACACGA...TTCTACTGGC:W1(V380_D-1)->T:W-1(V396_D-1) adding edge: GGCCACACGA...TTCTACTGGC:W1(V380_D-1) to T:W-1(V396_D-1) removing edge Edge(395->396,w:2.0)(C:W-1(V395_D-1)->T:W-1(V396_D-1)) removing edge Edge(380->395,w:2.0)(GGCCACACGA...TTCTACTGGC:W1(V380_D-1)->C:W-1(V395_D-1)) Found potential edge: Edge(380->396,w:2.0) between GGCCACACGA...TTCTACTGGC:W1(V380_D-1) and T:W-1(V396_D-1) removing vertex T:W-1(V396_D-1) was concatenated into GGCCACACGA...TCTACTGGCT:W1(V380_D-1) Want to move edge Edge(396->397,w:2.0)(T:W-1(V396_D-1)->A:W-1(V397_D-1)) to (GGCCACACGA...TCTACTGGCT:W1(V380_D-1)->A:W-1(V397_D-1) adding edge: GGCCACACGA...TCTACTGGCT:W1(V380_D-1) to A:W-1(V397_D-1) removing edge Edge(396->397,w:2.0)(T:W-1(V396_D-1)->A:W-1(V397_D-1)) removing edge Edge(380->396,w:2.0)(GGCCACACGA...TCTACTGGCT:W1(V380_D-1)->T:W-1(V396_D-1)) Found potential edge: Edge(380->397,w:2.0) between GGCCACACGA...TCTACTGGCT:W1(V380_D-1) and A:W-1(V397_D-1) removing vertex A:W-1(V397_D-1) was concatenated into GGCCACACGA...CTACTGGCTA:W1(V380_D-1) Want to move edge Edge(397->398,w:2.0)(A:W-1(V397_D-1)->C:W-1(V398_D-1)) to (GGCCACACGA...CTACTGGCTA:W1(V380_D-1)->C:W-1(V398_D-1) adding edge: GGCCACACGA...CTACTGGCTA:W1(V380_D-1) to C:W-1(V398_D-1) removing edge Edge(397->398,w:2.0)(A:W-1(V397_D-1)->C:W-1(V398_D-1)) removing edge Edge(380->397,w:2.0)(GGCCACACGA...CTACTGGCTA:W1(V380_D-1)->A:W-1(V397_D-1)) Found potential edge: Edge(380->398,w:2.0) between GGCCACACGA...CTACTGGCTA:W1(V380_D-1) and C:W-1(V398_D-1) removing vertex C:W-1(V398_D-1) was concatenated into GGCCACACGA...TACTGGCTAC:W1(V380_D-1) Want to move edge Edge(398->399,w:2.0)(C:W-1(V398_D-1)->A:W-1(V399_D-1)) to (GGCCACACGA...TACTGGCTAC:W1(V380_D-1)->A:W-1(V399_D-1) adding edge: GGCCACACGA...TACTGGCTAC:W1(V380_D-1) to A:W-1(V399_D-1) removing edge Edge(398->399,w:2.0)(C:W-1(V398_D-1)->A:W-1(V399_D-1)) removing edge Edge(380->398,w:2.0)(GGCCACACGA...TACTGGCTAC:W1(V380_D-1)->C:W-1(V398_D-1)) Found potential edge: Edge(380->399,w:2.0) between GGCCACACGA...TACTGGCTAC:W1(V380_D-1) and A:W-1(V399_D-1) removing vertex A:W-1(V399_D-1) was concatenated into GGCCACACGA...ACTGGCTACA:W1(V380_D-1) Want to move edge Edge(399->400,w:2.0)(A:W-1(V399_D-1)->A:W-1(V400_D-1)) to (GGCCACACGA...ACTGGCTACA:W1(V380_D-1)->A:W-1(V400_D-1) adding edge: GGCCACACGA...ACTGGCTACA:W1(V380_D-1) to A:W-1(V400_D-1) removing edge Edge(399->400,w:2.0)(A:W-1(V399_D-1)->A:W-1(V400_D-1)) removing edge Edge(380->399,w:2.0)(GGCCACACGA...ACTGGCTACA:W1(V380_D-1)->A:W-1(V399_D-1)) Found potential edge: Edge(380->400,w:2.0) between GGCCACACGA...ACTGGCTACA:W1(V380_D-1) and A:W-1(V400_D-1) removing vertex A:W-1(V400_D-1) was concatenated into GGCCACACGA...CTGGCTACAA:W1(V380_D-1) Want to move edge Edge(400->401,w:2.0)(A:W-1(V400_D-1)->A:W-1(V401_D-1)) to (GGCCACACGA...CTGGCTACAA:W1(V380_D-1)->A:W-1(V401_D-1) adding edge: GGCCACACGA...CTGGCTACAA:W1(V380_D-1) to A:W-1(V401_D-1) removing edge Edge(400->401,w:2.0)(A:W-1(V400_D-1)->A:W-1(V401_D-1)) removing edge Edge(380->400,w:2.0)(GGCCACACGA...CTGGCTACAA:W1(V380_D-1)->A:W-1(V400_D-1)) Found potential edge: Edge(380->401,w:2.0) between GGCCACACGA...CTGGCTACAA:W1(V380_D-1) and A:W-1(V401_D-1) removing vertex A:W-1(V401_D-1) was concatenated into GGCCACACGA...TGGCTACAAA:W1(V380_D-1) Want to move edge Edge(401->402,w:4.0)(A:W-1(V401_D-1)->C:W-1(V402_D-1)) to (GGCCACACGA...TGGCTACAAA:W1(V380_D-1)->C:W-1(V402_D-1) adding edge: GGCCACACGA...TGGCTACAAA:W1(V380_D-1) to C:W-1(V402_D-1) removing edge Edge(401->402,w:4.0)(A:W-1(V401_D-1)->C:W-1(V402_D-1)) removing edge Edge(380->401,w:2.0)(GGCCACACGA...TGGCTACAAA:W1(V380_D-1)->A:W-1(V401_D-1)) Found potential edge: Edge(380->402,w:4.0) between GGCCACACGA...TGGCTACAAA:W1(V380_D-1) and C:W-1(V402_D-1) removing vertex C:W-1(V402_D-1) was concatenated into GGCCACACGA...GGCTACAAAC:W1(V380_D-1) Want to move edge Edge(402->403,w:4.0)(C:W-1(V402_D-1)->A:W-1(V403_D-1)) to (GGCCACACGA...GGCTACAAAC:W1(V380_D-1)->A:W-1(V403_D-1) adding edge: GGCCACACGA...GGCTACAAAC:W1(V380_D-1) to A:W-1(V403_D-1) removing edge Edge(402->403,w:4.0)(C:W-1(V402_D-1)->A:W-1(V403_D-1)) removing edge Edge(380->402,w:4.0)(GGCCACACGA...GGCTACAAAC:W1(V380_D-1)->C:W-1(V402_D-1)) Found potential edge: Edge(380->403,w:4.0) between GGCCACACGA...GGCTACAAAC:W1(V380_D-1) and A:W-1(V403_D-1) removing vertex A:W-1(V403_D-1) was concatenated into GGCCACACGA...GCTACAAACA:W1(V380_D-1) Want to move edge Edge(403->404,w:4.0)(A:W-1(V403_D-1)->G:W-1(V404_D-1)) to (GGCCACACGA...GCTACAAACA:W1(V380_D-1)->G:W-1(V404_D-1) adding edge: GGCCACACGA...GCTACAAACA:W1(V380_D-1) to G:W-1(V404_D-1) removing edge Edge(403->404,w:4.0)(A:W-1(V403_D-1)->G:W-1(V404_D-1)) removing edge Edge(380->403,w:4.0)(GGCCACACGA...GCTACAAACA:W1(V380_D-1)->A:W-1(V403_D-1)) Found potential edge: Edge(380->404,w:4.0) between GGCCACACGA...GCTACAAACA:W1(V380_D-1) and G:W-1(V404_D-1) removing vertex G:W-1(V404_D-1) was concatenated into GGCCACACGA...CTACAAACAG:W1(V380_D-1) Want to move edge Edge(404->405,w:4.0)(G:W-1(V404_D-1)->A:W-1(V405_D-1)) to (GGCCACACGA...CTACAAACAG:W1(V380_D-1)->A:W-1(V405_D-1) adding edge: GGCCACACGA...CTACAAACAG:W1(V380_D-1) to A:W-1(V405_D-1) removing edge Edge(404->405,w:4.0)(G:W-1(V404_D-1)->A:W-1(V405_D-1)) removing edge Edge(380->404,w:4.0)(GGCCACACGA...CTACAAACAG:W1(V380_D-1)->G:W-1(V404_D-1)) Found potential edge: Edge(380->405,w:4.0) between GGCCACACGA...CTACAAACAG:W1(V380_D-1) and A:W-1(V405_D-1) removing vertex A:W-1(V405_D-1) was concatenated into GGCCACACGA...TACAAACAGA:W1(V380_D-1) Want to move edge Edge(405->406,w:4.0)(A:W-1(V405_D-1)->C:W-1(V406_D-1)) to (GGCCACACGA...TACAAACAGA:W1(V380_D-1)->C:W-1(V406_D-1) adding edge: GGCCACACGA...TACAAACAGA:W1(V380_D-1) to C:W-1(V406_D-1) removing edge Edge(405->406,w:4.0)(A:W-1(V405_D-1)->C:W-1(V406_D-1)) removing edge Edge(380->405,w:4.0)(GGCCACACGA...TACAAACAGA:W1(V380_D-1)->A:W-1(V405_D-1)) Found potential edge: Edge(380->406,w:4.0) between GGCCACACGA...TACAAACAGA:W1(V380_D-1) and C:W-1(V406_D-1) removing vertex C:W-1(V406_D-1) was concatenated into GGCCACACGA...ACAAACAGAC:W1(V380_D-1) Want to move edge Edge(406->407,w:4.0)(C:W-1(V406_D-1)->T:W-1(V407_D-1)) to (GGCCACACGA...ACAAACAGAC:W1(V380_D-1)->T:W-1(V407_D-1) adding edge: GGCCACACGA...ACAAACAGAC:W1(V380_D-1) to T:W-1(V407_D-1) removing edge Edge(406->407,w:4.0)(C:W-1(V406_D-1)->T:W-1(V407_D-1)) removing edge Edge(380->406,w:4.0)(GGCCACACGA...ACAAACAGAC:W1(V380_D-1)->C:W-1(V406_D-1)) Found potential edge: Edge(380->407,w:4.0) between GGCCACACGA...ACAAACAGAC:W1(V380_D-1) and T:W-1(V407_D-1) removing vertex T:W-1(V407_D-1) was concatenated into GGCCACACGA...CAAACAGACT:W1(V380_D-1) Want to move edge Edge(407->408,w:4.0)(T:W-1(V407_D-1)->T:W-1(V408_D-1)) to (GGCCACACGA...CAAACAGACT:W1(V380_D-1)->T:W-1(V408_D-1) adding edge: GGCCACACGA...CAAACAGACT:W1(V380_D-1) to T:W-1(V408_D-1) removing edge Edge(407->408,w:4.0)(T:W-1(V407_D-1)->T:W-1(V408_D-1)) removing edge Edge(380->407,w:4.0)(GGCCACACGA...CAAACAGACT:W1(V380_D-1)->T:W-1(V407_D-1)) Found potential edge: Edge(380->408,w:4.0) between GGCCACACGA...CAAACAGACT:W1(V380_D-1) and T:W-1(V408_D-1) removing vertex T:W-1(V408_D-1) was concatenated into GGCCACACGA...AAACAGACTT:W1(V380_D-1) Want to move edge Edge(408->409,w:4.0)(T:W-1(V408_D-1)->C:W-1(V409_D-1)) to (GGCCACACGA...AAACAGACTT:W1(V380_D-1)->C:W-1(V409_D-1) adding edge: GGCCACACGA...AAACAGACTT:W1(V380_D-1) to C:W-1(V409_D-1) removing edge Edge(408->409,w:4.0)(T:W-1(V408_D-1)->C:W-1(V409_D-1)) removing edge Edge(380->408,w:4.0)(GGCCACACGA...AAACAGACTT:W1(V380_D-1)->T:W-1(V408_D-1)) Found potential edge: Edge(380->409,w:4.0) between GGCCACACGA...AAACAGACTT:W1(V380_D-1) and C:W-1(V409_D-1) removing vertex C:W-1(V409_D-1) was concatenated into GGCCACACGA...AACAGACTTC:W1(V380_D-1) Want to move edge Edge(409->410,w:4.0)(C:W-1(V409_D-1)->C:W-1(V410_D-1)) to (GGCCACACGA...AACAGACTTC:W1(V380_D-1)->C:W-1(V410_D-1) adding edge: GGCCACACGA...AACAGACTTC:W1(V380_D-1) to C:W-1(V410_D-1) removing edge Edge(409->410,w:4.0)(C:W-1(V409_D-1)->C:W-1(V410_D-1)) removing edge Edge(380->409,w:4.0)(GGCCACACGA...AACAGACTTC:W1(V380_D-1)->C:W-1(V409_D-1)) Found potential edge: Edge(380->410,w:4.0) between GGCCACACGA...AACAGACTTC:W1(V380_D-1) and C:W-1(V410_D-1) removing vertex C:W-1(V410_D-1) was concatenated into GGCCACACGA...ACAGACTTCC:W1(V380_D-1) Want to move edge Edge(410->411,w:4.0)(C:W-1(V410_D-1)->T:W-1(V411_D-1)) to (GGCCACACGA...ACAGACTTCC:W1(V380_D-1)->T:W-1(V411_D-1) adding edge: GGCCACACGA...ACAGACTTCC:W1(V380_D-1) to T:W-1(V411_D-1) removing edge Edge(410->411,w:4.0)(C:W-1(V410_D-1)->T:W-1(V411_D-1)) removing edge Edge(380->410,w:4.0)(GGCCACACGA...ACAGACTTCC:W1(V380_D-1)->C:W-1(V410_D-1)) Found potential edge: Edge(380->411,w:4.0) between GGCCACACGA...ACAGACTTCC:W1(V380_D-1) and T:W-1(V411_D-1) removing vertex T:W-1(V411_D-1) was concatenated into GGCCACACGA...CAGACTTCCT:W1(V380_D-1) Want to move edge Edge(411->412,w:6.0)(T:W-1(V411_D-1)->C:W-1(V412_D-1)) to (GGCCACACGA...CAGACTTCCT:W1(V380_D-1)->C:W-1(V412_D-1) adding edge: GGCCACACGA...CAGACTTCCT:W1(V380_D-1) to C:W-1(V412_D-1) removing edge Edge(411->412,w:6.0)(T:W-1(V411_D-1)->C:W-1(V412_D-1)) removing edge Edge(380->411,w:4.0)(GGCCACACGA...CAGACTTCCT:W1(V380_D-1)->T:W-1(V411_D-1)) Found potential edge: Edge(380->412,w:6.0) between GGCCACACGA...CAGACTTCCT:W1(V380_D-1) and C:W-1(V412_D-1) removing vertex C:W-1(V412_D-1) was concatenated into GGCCACACGA...AGACTTCCTC:W2(V380_D-1) Want to move edge Edge(412->413,w:6.0)(C:W-1(V412_D-1)->A:W-1(V413_D-1)) to (GGCCACACGA...AGACTTCCTC:W2(V380_D-1)->A:W-1(V413_D-1) adding edge: GGCCACACGA...AGACTTCCTC:W2(V380_D-1) to A:W-1(V413_D-1) removing edge Edge(412->413,w:6.0)(C:W-1(V412_D-1)->A:W-1(V413_D-1)) removing edge Edge(380->412,w:6.0)(GGCCACACGA...AGACTTCCTC:W2(V380_D-1)->C:W-1(V412_D-1)) Found potential edge: Edge(380->413,w:6.0) between GGCCACACGA...AGACTTCCTC:W2(V380_D-1) and A:W-1(V413_D-1) removing vertex A:W-1(V413_D-1) was concatenated into GGCCACACGA...GACTTCCTCA:W2(V380_D-1) Want to move edge Edge(413->414,w:8.0)(A:W-1(V413_D-1)->A:W-1(V414_D-1)) to (GGCCACACGA...GACTTCCTCA:W2(V380_D-1)->A:W-1(V414_D-1) adding edge: GGCCACACGA...GACTTCCTCA:W2(V380_D-1) to A:W-1(V414_D-1) removing edge Edge(413->414,w:8.0)(A:W-1(V413_D-1)->A:W-1(V414_D-1)) removing edge Edge(380->413,w:6.0)(GGCCACACGA...GACTTCCTCA:W2(V380_D-1)->A:W-1(V413_D-1)) Found potential edge: Edge(380->414,w:8.0) between GGCCACACGA...GACTTCCTCA:W2(V380_D-1) and A:W-1(V414_D-1) removing vertex A:W-1(V414_D-1) was concatenated into GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) Want to move edge Edge(414->415,w:8.0)(A:W-1(V414_D-1)->G:W-1(V415_D-1)) to (GGCCACACGA...ACTTCCTCAA:W2(V380_D-1)->G:W-1(V415_D-1) adding edge: GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) to G:W-1(V415_D-1) removing edge Edge(414->415,w:8.0)(A:W-1(V414_D-1)->G:W-1(V415_D-1)) removing edge Edge(380->414,w:8.0)(GGCCACACGA...ACTTCCTCAA:W2(V380_D-1)->A:W-1(V414_D-1)) Found potential edge: Edge(380->415,w:8.0) between GGCCACACGA...ACTTCCTCAA:W2(V380_D-1) and G:W-1(V415_D-1) removing vertex G:W-1(V415_D-1) was concatenated into GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) Want to move edge Edge(415->416,w:6.0)(G:W-1(V415_D-1)->C:W-1(V416_D-1)) to (GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->C:W-1(V416_D-1) adding edge: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) to C:W-1(V416_D-1) Want to move edge Edge(415->885,w:2.0)(G:W-1(V415_D-1)->G:W-1(V885_D-1)) to (GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->G:W-1(V885_D-1) adding edge: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) to G:W-1(V885_D-1) removing edge Edge(415->416,w:6.0)(G:W-1(V415_D-1)->C:W-1(V416_D-1)) removing edge Edge(415->885,w:2.0)(G:W-1(V415_D-1)->G:W-1(V885_D-1)) removing edge Edge(380->415,w:8.0)(GGCCACACGA...CTTCCTCAAG:W2(V380_D-1)->G:W-1(V415_D-1)) Found potential edge: Edge(416->417,w:6.0) between C:W-1(V416_D-1) and C:W-1(V417_D-1) removing vertex C:W-1(V417_D-1) was concatenated into CC:W6(V416_D-1) Want to move edge Edge(417->418,w:6.0)(C:W-1(V417_D-1)->T:W-1(V418_D-1)) to (CC:W6(V416_D-1)->T:W-1(V418_D-1) adding edge: CC:W6(V416_D-1) to T:W-1(V418_D-1) removing edge Edge(417->418,w:6.0)(C:W-1(V417_D-1)->T:W-1(V418_D-1)) removing edge Edge(416->417,w:6.0)(CC:W6(V416_D-1)->C:W-1(V417_D-1)) Found potential edge: Edge(416->418,w:6.0) between CC:W6(V416_D-1) and T:W-1(V418_D-1) removing vertex T:W-1(V418_D-1) was concatenated into CCT:W6(V416_D-1) Want to move edge Edge(418->419,w:6.0)(T:W-1(V418_D-1)->C:W-1(V419_D-1)) to (CCT:W6(V416_D-1)->C:W-1(V419_D-1) adding edge: CCT:W6(V416_D-1) to C:W-1(V419_D-1) removing edge Edge(418->419,w:6.0)(T:W-1(V418_D-1)->C:W-1(V419_D-1)) removing edge Edge(416->418,w:6.0)(CCT:W6(V416_D-1)->T:W-1(V418_D-1)) Found potential edge: Edge(416->419,w:6.0) between CCT:W6(V416_D-1) and C:W-1(V419_D-1) removing vertex C:W-1(V419_D-1) was concatenated into CCTC:W6(V416_D-1) Want to move edge Edge(419->420,w:6.0)(C:W-1(V419_D-1)->A:W-1(V420_D-1)) to (CCTC:W6(V416_D-1)->A:W-1(V420_D-1) adding edge: CCTC:W6(V416_D-1) to A:W-1(V420_D-1) removing edge Edge(419->420,w:6.0)(C:W-1(V419_D-1)->A:W-1(V420_D-1)) removing edge Edge(416->419,w:6.0)(CCTC:W6(V416_D-1)->C:W-1(V419_D-1)) Found potential edge: Edge(416->420,w:6.0) between CCTC:W6(V416_D-1) and A:W-1(V420_D-1) removing vertex A:W-1(V420_D-1) was concatenated into CCTCA:W6(V416_D-1) Want to move edge Edge(420->421,w:6.0)(A:W-1(V420_D-1)->T:W-1(V421_D-1)) to (CCTCA:W6(V416_D-1)->T:W-1(V421_D-1) adding edge: CCTCA:W6(V416_D-1) to T:W-1(V421_D-1) removing edge Edge(420->421,w:6.0)(A:W-1(V420_D-1)->T:W-1(V421_D-1)) removing edge Edge(416->420,w:6.0)(CCTCA:W6(V416_D-1)->A:W-1(V420_D-1)) Found potential edge: Edge(416->421,w:6.0) between CCTCA:W6(V416_D-1) and T:W-1(V421_D-1) removing vertex T:W-1(V421_D-1) was concatenated into CCTCAT:W6(V416_D-1) Want to move edge Edge(421->422,w:6.0)(T:W-1(V421_D-1)->C:W-1(V422_D-1)) to (CCTCAT:W6(V416_D-1)->C:W-1(V422_D-1) adding edge: CCTCAT:W6(V416_D-1) to C:W-1(V422_D-1) removing edge Edge(421->422,w:6.0)(T:W-1(V421_D-1)->C:W-1(V422_D-1)) removing edge Edge(416->421,w:6.0)(CCTCAT:W6(V416_D-1)->T:W-1(V421_D-1)) Found potential edge: Edge(416->422,w:6.0) between CCTCAT:W6(V416_D-1) and C:W-1(V422_D-1) removing vertex C:W-1(V422_D-1) was concatenated into CCTCATC:W6(V416_D-1) Want to move edge Edge(422->423,w:8.0)(C:W-1(V422_D-1)->A:W-1(V423_D-1)) to (CCTCATC:W6(V416_D-1)->A:W-1(V423_D-1) adding edge: CCTCATC:W6(V416_D-1) to A:W-1(V423_D-1) removing edge Edge(422->423,w:8.0)(C:W-1(V422_D-1)->A:W-1(V423_D-1)) removing edge Edge(416->422,w:6.0)(CCTCATC:W6(V416_D-1)->C:W-1(V422_D-1)) Found potential edge: Edge(416->423,w:8.0) between CCTCATC:W6(V416_D-1) and A:W-1(V423_D-1) removing vertex A:W-1(V423_D-1) was concatenated into CCTCATCA:W6(V416_D-1) Want to move edge Edge(423->424,w:8.0)(A:W-1(V423_D-1)->G:W-1(V424_D-1)) to (CCTCATCA:W6(V416_D-1)->G:W-1(V424_D-1) adding edge: CCTCATCA:W6(V416_D-1) to G:W-1(V424_D-1) removing edge Edge(423->424,w:8.0)(A:W-1(V423_D-1)->G:W-1(V424_D-1)) removing edge Edge(416->423,w:8.0)(CCTCATCA:W6(V416_D-1)->A:W-1(V423_D-1)) Found potential edge: Edge(416->424,w:8.0) between CCTCATCA:W6(V416_D-1) and G:W-1(V424_D-1) removing vertex G:W-1(V424_D-1) was concatenated into CCTCATCAG:W7(V416_D-1) Want to move edge Edge(424->425,w:8.0)(G:W-1(V424_D-1)->C:W-1(V425_D-1)) to (CCTCATCAG:W7(V416_D-1)->C:W-1(V425_D-1) adding edge: CCTCATCAG:W7(V416_D-1) to C:W-1(V425_D-1) removing edge Edge(424->425,w:8.0)(G:W-1(V424_D-1)->C:W-1(V425_D-1)) removing edge Edge(416->424,w:8.0)(CCTCATCAG:W7(V416_D-1)->G:W-1(V424_D-1)) Found potential edge: Edge(416->425,w:8.0) between CCTCATCAG:W7(V416_D-1) and C:W-1(V425_D-1) removing vertex C:W-1(V425_D-1) was concatenated into CCTCATCAGC:W7(V416_D-1) Want to move edge Edge(425->426,w:8.0)(C:W-1(V425_D-1)->A:W-1(V426_D-1)) to (CCTCATCAGC:W7(V416_D-1)->A:W-1(V426_D-1) adding edge: CCTCATCAGC:W7(V416_D-1) to A:W-1(V426_D-1) removing edge Edge(425->426,w:8.0)(C:W-1(V425_D-1)->A:W-1(V426_D-1)) removing edge Edge(416->425,w:8.0)(CCTCATCAGC:W7(V416_D-1)->C:W-1(V425_D-1)) Found potential edge: Edge(416->426,w:8.0) between CCTCATCAGC:W7(V416_D-1) and A:W-1(V426_D-1) removing vertex A:W-1(V426_D-1) was concatenated into CCTCATCAGCA:W7(V416_D-1) Want to move edge Edge(426->427,w:8.0)(A:W-1(V426_D-1)->A:W-1(V427_D-1)) to (CCTCATCAGCA:W7(V416_D-1)->A:W-1(V427_D-1) adding edge: CCTCATCAGCA:W7(V416_D-1) to A:W-1(V427_D-1) removing edge Edge(426->427,w:8.0)(A:W-1(V426_D-1)->A:W-1(V427_D-1)) removing edge Edge(416->426,w:8.0)(CCTCATCAGCA:W7(V416_D-1)->A:W-1(V426_D-1)) Found potential edge: Edge(416->427,w:8.0) between CCTCATCAGCA:W7(V416_D-1) and A:W-1(V427_D-1) removing vertex A:W-1(V427_D-1) was concatenated into CCTCATCAGCAA:W7(V416_D-1) Want to move edge Edge(427->428,w:8.0)(A:W-1(V427_D-1)->G:W-1(V428_D-1)) to (CCTCATCAGCAA:W7(V416_D-1)->G:W-1(V428_D-1) adding edge: CCTCATCAGCAA:W7(V416_D-1) to G:W-1(V428_D-1) removing edge Edge(427->428,w:8.0)(A:W-1(V427_D-1)->G:W-1(V428_D-1)) removing edge Edge(416->427,w:8.0)(CCTCATCAGCAA:W7(V416_D-1)->A:W-1(V427_D-1)) Found potential edge: Edge(416->428,w:8.0) between CCTCATCAGCAA:W7(V416_D-1) and G:W-1(V428_D-1) removing vertex G:W-1(V428_D-1) was concatenated into CCTCATCAGCAAG:W7(V416_D-1) Want to move edge Edge(428->429,w:8.0)(G:W-1(V428_D-1)->A:W-1(V429_D-1)) to (CCTCATCAGCAAG:W7(V416_D-1)->A:W-1(V429_D-1) adding edge: CCTCATCAGCAAG:W7(V416_D-1) to A:W-1(V429_D-1) removing edge Edge(428->429,w:8.0)(G:W-1(V428_D-1)->A:W-1(V429_D-1)) removing edge Edge(416->428,w:8.0)(CCTCATCAGCAAG:W7(V416_D-1)->G:W-1(V428_D-1)) Found potential edge: Edge(416->429,w:8.0) between CCTCATCAGCAAG:W7(V416_D-1) and A:W-1(V429_D-1) removing vertex A:W-1(V429_D-1) was concatenated into CCTCATCAGCAAGA:W7(V416_D-1) Want to move edge Edge(429->430,w:8.0)(A:W-1(V429_D-1)->A:W-1(V430_D-1)) to (CCTCATCAGCAAGA:W7(V416_D-1)->A:W-1(V430_D-1) adding edge: CCTCATCAGCAAGA:W7(V416_D-1) to A:W-1(V430_D-1) removing edge Edge(429->430,w:8.0)(A:W-1(V429_D-1)->A:W-1(V430_D-1)) removing edge Edge(416->429,w:8.0)(CCTCATCAGCAAGA:W7(V416_D-1)->A:W-1(V429_D-1)) Found potential edge: Edge(416->430,w:8.0) between CCTCATCAGCAAGA:W7(V416_D-1) and A:W-1(V430_D-1) removing vertex A:W-1(V430_D-1) was concatenated into CCTCATCAGCAAGAA:W7(V416_D-1) Want to move edge Edge(430->431,w:8.0)(A:W-1(V430_D-1)->G:W-1(V431_D-1)) to (CCTCATCAGCAAGAA:W7(V416_D-1)->G:W-1(V431_D-1) adding edge: CCTCATCAGCAAGAA:W7(V416_D-1) to G:W-1(V431_D-1) removing edge Edge(430->431,w:8.0)(A:W-1(V430_D-1)->G:W-1(V431_D-1)) removing edge Edge(416->430,w:8.0)(CCTCATCAGCAAGAA:W7(V416_D-1)->A:W-1(V430_D-1)) Found potential edge: Edge(416->431,w:8.0) between CCTCATCAGCAAGAA:W7(V416_D-1) and G:W-1(V431_D-1) removing vertex G:W-1(V431_D-1) was concatenated into CCTCATCAGCAAGAAG:W7(V416_D-1) Want to move edge Edge(431->432,w:8.0)(G:W-1(V431_D-1)->A:W-1(V432_D-1)) to (CCTCATCAGCAAGAAG:W7(V416_D-1)->A:W-1(V432_D-1) adding edge: CCTCATCAGCAAGAAG:W7(V416_D-1) to A:W-1(V432_D-1) removing edge Edge(431->432,w:8.0)(G:W-1(V431_D-1)->A:W-1(V432_D-1)) removing edge Edge(416->431,w:8.0)(CCTCATCAGCAAGAAG:W7(V416_D-1)->G:W-1(V431_D-1)) Found potential edge: Edge(416->432,w:8.0) between CCTCATCAGCAAGAAG:W7(V416_D-1) and A:W-1(V432_D-1) removing vertex A:W-1(V432_D-1) was concatenated into CCTCATCAGCAAGAAGA:W7(V416_D-1) Want to move edge Edge(432->433,w:6.0)(A:W-1(V432_D-1)->A:W-1(V433_D-1)) to (CCTCATCAGCAAGAAGA:W7(V416_D-1)->A:W-1(V433_D-1) adding edge: CCTCATCAGCAAGAAGA:W7(V416_D-1) to A:W-1(V433_D-1) removing edge Edge(432->433,w:6.0)(A:W-1(V432_D-1)->A:W-1(V433_D-1)) removing edge Edge(416->432,w:8.0)(CCTCATCAGCAAGAAGA:W7(V416_D-1)->A:W-1(V432_D-1)) Found potential edge: Edge(416->433,w:6.0) between CCTCATCAGCAAGAAGA:W7(V416_D-1) and A:W-1(V433_D-1) removing vertex A:W-1(V433_D-1) was concatenated into CCTCATCAGCAAGAAGAA:W7(V416_D-1) Want to move edge Edge(433->434,w:6.0)(A:W-1(V433_D-1)->A:W-1(V434_D-1)) to (CCTCATCAGCAAGAAGAA:W7(V416_D-1)->A:W-1(V434_D-1) adding edge: CCTCATCAGCAAGAAGAA:W7(V416_D-1) to A:W-1(V434_D-1) removing edge Edge(433->434,w:6.0)(A:W-1(V433_D-1)->A:W-1(V434_D-1)) removing edge Edge(416->433,w:6.0)(CCTCATCAGCAAGAAGAA:W7(V416_D-1)->A:W-1(V433_D-1)) Found potential edge: Edge(416->434,w:6.0) between CCTCATCAGCAAGAAGAA:W7(V416_D-1) and A:W-1(V434_D-1) removing vertex A:W-1(V434_D-1) was concatenated into CCTCATCAGCAAGAAGAAA:W7(V416_D-1) Want to move edge Edge(434->435,w:6.0)(A:W-1(V434_D-1)->T:W-1(V435_D-1)) to (CCTCATCAGCAAGAAGAAA:W7(V416_D-1)->T:W-1(V435_D-1) adding edge: CCTCATCAGCAAGAAGAAA:W7(V416_D-1) to T:W-1(V435_D-1) removing edge Edge(434->435,w:6.0)(A:W-1(V434_D-1)->T:W-1(V435_D-1)) removing edge Edge(416->434,w:6.0)(CCTCATCAGCAAGAAGAAA:W7(V416_D-1)->A:W-1(V434_D-1)) Found potential edge: Edge(416->435,w:6.0) between CCTCATCAGCAAGAAGAAA:W7(V416_D-1) and T:W-1(V435_D-1) removing vertex T:W-1(V435_D-1) was concatenated into CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) Want to move edge Edge(435->436,w:6.0)(T:W-1(V435_D-1)->C:W-1(V436_D-1)) to (CCTCATCAGCAAGAAGAAAT:W7(V416_D-1)->C:W-1(V436_D-1) adding edge: CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) to C:W-1(V436_D-1) removing edge Edge(435->436,w:6.0)(T:W-1(V435_D-1)->C:W-1(V436_D-1)) removing edge Edge(416->435,w:6.0)(CCTCATCAGCAAGAAGAAAT:W7(V416_D-1)->T:W-1(V435_D-1)) Found potential edge: Edge(416->436,w:6.0) between CCTCATCAGCAAGAAGAAAT:W7(V416_D-1) and C:W-1(V436_D-1) removing vertex C:W-1(V436_D-1) was concatenated into CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) Want to move edge Edge(436->437,w:6.0)(C:W-1(V436_D-1)->T:W-1(V437_D-1)) to (CCTCATCAGCAAGAAGAAATC:W7(V416_D-1)->T:W-1(V437_D-1) adding edge: CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) to T:W-1(V437_D-1) removing edge Edge(436->437,w:6.0)(C:W-1(V436_D-1)->T:W-1(V437_D-1)) removing edge Edge(416->436,w:6.0)(CCTCATCAGCAAGAAGAAATC:W7(V416_D-1)->C:W-1(V436_D-1)) Found potential edge: Edge(416->437,w:6.0) between CCTCATCAGCAAGAAGAAATC:W7(V416_D-1) and T:W-1(V437_D-1) removing vertex T:W-1(V437_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) Want to move edge Edge(437->438,w:6.0)(T:W-1(V437_D-1)->T:W-1(V438_D-1)) to (CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1)->T:W-1(V438_D-1) adding edge: CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) to T:W-1(V438_D-1) removing edge Edge(437->438,w:6.0)(T:W-1(V437_D-1)->T:W-1(V438_D-1)) removing edge Edge(416->437,w:6.0)(CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1)->T:W-1(V437_D-1)) Found potential edge: Edge(416->438,w:6.0) between CCTCATCAGCAAGAAGAAATCT:W7(V416_D-1) and T:W-1(V438_D-1) removing vertex T:W-1(V438_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) Want to move edge Edge(438->439,w:6.0)(T:W-1(V438_D-1)->T:W-1(V439_D-1)) to (CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1)->T:W-1(V439_D-1) adding edge: CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) to T:W-1(V439_D-1) removing edge Edge(438->439,w:6.0)(T:W-1(V438_D-1)->T:W-1(V439_D-1)) removing edge Edge(416->438,w:6.0)(CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1)->T:W-1(V438_D-1)) Found potential edge: Edge(416->439,w:6.0) between CCTCATCAGCAAGAAGAAATCTT:W7(V416_D-1) and T:W-1(V439_D-1) removing vertex T:W-1(V439_D-1) was concatenated into CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) Want to move edge Edge(439->440,w:6.0)(T:W-1(V439_D-1)->C:W-1(V440_D-1)) to (CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1)->C:W-1(V440_D-1) adding edge: CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) to C:W-1(V440_D-1) removing edge Edge(439->440,w:6.0)(T:W-1(V439_D-1)->C:W-1(V440_D-1)) removing edge Edge(416->439,w:6.0)(CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1)->T:W-1(V439_D-1)) Found potential edge: Edge(440->441,w:8.0) between C:W-1(V440_D-1) and T:W-1(V441_D-1) removing vertex T:W-1(V441_D-1) was concatenated into CT:W8(V440_D-1) Want to move edge Edge(441->442,w:8.0)(T:W-1(V441_D-1)->T:W-1(V442_D-1)) to (CT:W8(V440_D-1)->T:W-1(V442_D-1) adding edge: CT:W8(V440_D-1) to T:W-1(V442_D-1) removing edge Edge(441->442,w:8.0)(T:W-1(V441_D-1)->T:W-1(V442_D-1)) removing edge Edge(440->441,w:8.0)(CT:W8(V440_D-1)->T:W-1(V441_D-1)) Found potential edge: Edge(440->442,w:8.0) between CT:W8(V440_D-1) and T:W-1(V442_D-1) removing vertex T:W-1(V442_D-1) was concatenated into CTT:W8(V440_D-1) Want to move edge Edge(442->443,w:8.0)(T:W-1(V442_D-1)->T:W-1(V443_D-1)) to (CTT:W8(V440_D-1)->T:W-1(V443_D-1) adding edge: CTT:W8(V440_D-1) to T:W-1(V443_D-1) removing edge Edge(442->443,w:8.0)(T:W-1(V442_D-1)->T:W-1(V443_D-1)) removing edge Edge(440->442,w:8.0)(CTT:W8(V440_D-1)->T:W-1(V442_D-1)) Found potential edge: Edge(440->443,w:8.0) between CTT:W8(V440_D-1) and T:W-1(V443_D-1) removing vertex T:W-1(V443_D-1) was concatenated into CTTT:W8(V440_D-1) Want to move edge Edge(443->444,w:8.0)(T:W-1(V443_D-1)->C:W-1(V444_D-1)) to (CTTT:W8(V440_D-1)->C:W-1(V444_D-1) adding edge: CTTT:W8(V440_D-1) to C:W-1(V444_D-1) removing edge Edge(443->444,w:8.0)(T:W-1(V443_D-1)->C:W-1(V444_D-1)) removing edge Edge(440->443,w:8.0)(CTTT:W8(V440_D-1)->T:W-1(V443_D-1)) Found potential edge: Edge(440->444,w:8.0) between CTTT:W8(V440_D-1) and C:W-1(V444_D-1) removing vertex C:W-1(V444_D-1) was concatenated into CTTTC:W8(V440_D-1) Want to move edge Edge(444->445,w:8.0)(C:W-1(V444_D-1)->C:W-1(V445_D-1)) to (CTTTC:W8(V440_D-1)->C:W-1(V445_D-1) adding edge: CTTTC:W8(V440_D-1) to C:W-1(V445_D-1) removing edge Edge(444->445,w:8.0)(C:W-1(V444_D-1)->C:W-1(V445_D-1)) removing edge Edge(440->444,w:8.0)(CTTTC:W8(V440_D-1)->C:W-1(V444_D-1)) Found potential edge: Edge(440->445,w:8.0) between CTTTC:W8(V440_D-1) and C:W-1(V445_D-1) removing vertex C:W-1(V445_D-1) was concatenated into CTTTCC:W8(V440_D-1) Want to move edge Edge(445->446,w:8.0)(C:W-1(V445_D-1)->A:W-1(V446_D-1)) to (CTTTCC:W8(V440_D-1)->A:W-1(V446_D-1) adding edge: CTTTCC:W8(V440_D-1) to A:W-1(V446_D-1) removing edge Edge(445->446,w:8.0)(C:W-1(V445_D-1)->A:W-1(V446_D-1)) removing edge Edge(440->445,w:8.0)(CTTTCC:W8(V440_D-1)->C:W-1(V445_D-1)) Found potential edge: Edge(440->446,w:8.0) between CTTTCC:W8(V440_D-1) and A:W-1(V446_D-1) removing vertex A:W-1(V446_D-1) was concatenated into CTTTCCA:W8(V440_D-1) Want to move edge Edge(446->447,w:8.0)(A:W-1(V446_D-1)->A:W-1(V447_D-1)) to (CTTTCCA:W8(V440_D-1)->A:W-1(V447_D-1) adding edge: CTTTCCA:W8(V440_D-1) to A:W-1(V447_D-1) removing edge Edge(446->447,w:8.0)(A:W-1(V446_D-1)->A:W-1(V447_D-1)) removing edge Edge(440->446,w:8.0)(CTTTCCA:W8(V440_D-1)->A:W-1(V446_D-1)) Found potential edge: Edge(440->447,w:8.0) between CTTTCCA:W8(V440_D-1) and A:W-1(V447_D-1) removing vertex A:W-1(V447_D-1) was concatenated into CTTTCCAA:W8(V440_D-1) Want to move edge Edge(447->448,w:8.0)(A:W-1(V447_D-1)->G:W-1(V448_D-1)) to (CTTTCCAA:W8(V440_D-1)->G:W-1(V448_D-1) adding edge: CTTTCCAA:W8(V440_D-1) to G:W-1(V448_D-1) removing edge Edge(447->448,w:8.0)(A:W-1(V447_D-1)->G:W-1(V448_D-1)) removing edge Edge(440->447,w:8.0)(CTTTCCAA:W8(V440_D-1)->A:W-1(V447_D-1)) Found potential edge: Edge(440->448,w:8.0) between CTTTCCAA:W8(V440_D-1) and G:W-1(V448_D-1) removing vertex G:W-1(V448_D-1) was concatenated into CTTTCCAAG:W8(V440_D-1) Want to move edge Edge(448->449,w:8.0)(G:W-1(V448_D-1)->T:W-1(V449_D-1)) to (CTTTCCAAG:W8(V440_D-1)->T:W-1(V449_D-1) adding edge: CTTTCCAAG:W8(V440_D-1) to T:W-1(V449_D-1) removing edge Edge(448->449,w:8.0)(G:W-1(V448_D-1)->T:W-1(V449_D-1)) removing edge Edge(440->448,w:8.0)(CTTTCCAAG:W8(V440_D-1)->G:W-1(V448_D-1)) Found potential edge: Edge(440->449,w:8.0) between CTTTCCAAG:W8(V440_D-1) and T:W-1(V449_D-1) removing vertex T:W-1(V449_D-1) was concatenated into CTTTCCAAGT:W8(V440_D-1) Want to move edge Edge(449->450,w:8.0)(T:W-1(V449_D-1)->A:W-1(V450_D-1)) to (CTTTCCAAGT:W8(V440_D-1)->A:W-1(V450_D-1) adding edge: CTTTCCAAGT:W8(V440_D-1) to A:W-1(V450_D-1) removing edge Edge(449->450,w:8.0)(T:W-1(V449_D-1)->A:W-1(V450_D-1)) removing edge Edge(440->449,w:8.0)(CTTTCCAAGT:W8(V440_D-1)->T:W-1(V449_D-1)) Found potential edge: Edge(440->450,w:8.0) between CTTTCCAAGT:W8(V440_D-1) and A:W-1(V450_D-1) removing vertex A:W-1(V450_D-1) was concatenated into CTTTCCAAGTA:W8(V440_D-1) Want to move edge Edge(450->451,w:8.0)(A:W-1(V450_D-1)->G:W-1(V451_D-1)) to (CTTTCCAAGTA:W8(V440_D-1)->G:W-1(V451_D-1) adding edge: CTTTCCAAGTA:W8(V440_D-1) to G:W-1(V451_D-1) removing edge Edge(450->451,w:8.0)(A:W-1(V450_D-1)->G:W-1(V451_D-1)) removing edge Edge(440->450,w:8.0)(CTTTCCAAGTA:W8(V440_D-1)->A:W-1(V450_D-1)) Found potential edge: Edge(451->452,w:10.0) between G:W-1(V451_D-1) and T:W-1(V452_D-1) removing vertex T:W-1(V452_D-1) was concatenated into GT:W10(V451_D-1) Want to move edge Edge(452->453,w:10.0)(T:W-1(V452_D-1)->G:W-1(V453_D-1)) to (GT:W10(V451_D-1)->G:W-1(V453_D-1) adding edge: GT:W10(V451_D-1) to G:W-1(V453_D-1) removing edge Edge(452->453,w:10.0)(T:W-1(V452_D-1)->G:W-1(V453_D-1)) removing edge Edge(451->452,w:10.0)(GT:W10(V451_D-1)->T:W-1(V452_D-1)) Found potential edge: Edge(451->453,w:10.0) between GT:W10(V451_D-1) and G:W-1(V453_D-1) removing vertex G:W-1(V453_D-1) was concatenated into GTG:W10(V451_D-1) Want to move edge Edge(453->454,w:8.0)(G:W-1(V453_D-1)->T:W-1(V454_D-1)) to (GTG:W10(V451_D-1)->T:W-1(V454_D-1) adding edge: GTG:W10(V451_D-1) to T:W-1(V454_D-1) removing edge Edge(453->454,w:8.0)(G:W-1(V453_D-1)->T:W-1(V454_D-1)) removing edge Edge(451->453,w:10.0)(GTG:W10(V451_D-1)->G:W-1(V453_D-1)) Found potential edge: Edge(451->454,w:8.0) between GTG:W10(V451_D-1) and T:W-1(V454_D-1) removing vertex T:W-1(V454_D-1) was concatenated into GTGT:W9(V451_D-1) Want to move edge Edge(454->455,w:8.0)(T:W-1(V454_D-1)->C:W-1(V455_D-1)) to (GTGT:W9(V451_D-1)->C:W-1(V455_D-1) adding edge: GTGT:W9(V451_D-1) to C:W-1(V455_D-1) removing edge Edge(454->455,w:8.0)(T:W-1(V454_D-1)->C:W-1(V455_D-1)) removing edge Edge(451->454,w:8.0)(GTGT:W9(V451_D-1)->T:W-1(V454_D-1)) Found potential edge: Edge(451->455,w:8.0) between GTGT:W9(V451_D-1) and C:W-1(V455_D-1) removing vertex C:W-1(V455_D-1) was concatenated into GTGTC:W9(V451_D-1) Want to move edge Edge(455->456,w:8.0)(C:W-1(V455_D-1)->T:W-1(V456_D-1)) to (GTGTC:W9(V451_D-1)->T:W-1(V456_D-1) adding edge: GTGTC:W9(V451_D-1) to T:W-1(V456_D-1) removing edge Edge(455->456,w:8.0)(C:W-1(V455_D-1)->T:W-1(V456_D-1)) removing edge Edge(451->455,w:8.0)(GTGTC:W9(V451_D-1)->C:W-1(V455_D-1)) Found potential edge: Edge(451->456,w:8.0) between GTGTC:W9(V451_D-1) and T:W-1(V456_D-1) removing vertex T:W-1(V456_D-1) was concatenated into GTGTCT:W9(V451_D-1) Want to move edge Edge(456->457,w:8.0)(T:W-1(V456_D-1)->T:W-1(V457_D-1)) to (GTGTCT:W9(V451_D-1)->T:W-1(V457_D-1) adding edge: GTGTCT:W9(V451_D-1) to T:W-1(V457_D-1) removing edge Edge(456->457,w:8.0)(T:W-1(V456_D-1)->T:W-1(V457_D-1)) removing edge Edge(451->456,w:8.0)(GTGTCT:W9(V451_D-1)->T:W-1(V456_D-1)) Found potential edge: Edge(451->457,w:8.0) between GTGTCT:W9(V451_D-1) and T:W-1(V457_D-1) removing vertex T:W-1(V457_D-1) was concatenated into GTGTCTT:W9(V451_D-1) Want to move edge Edge(457->458,w:8.0)(T:W-1(V457_D-1)->A:W-1(V458_D-1)) to (GTGTCTT:W9(V451_D-1)->A:W-1(V458_D-1) adding edge: GTGTCTT:W9(V451_D-1) to A:W-1(V458_D-1) removing edge Edge(457->458,w:8.0)(T:W-1(V457_D-1)->A:W-1(V458_D-1)) removing edge Edge(451->457,w:8.0)(GTGTCTT:W9(V451_D-1)->T:W-1(V457_D-1)) Found potential edge: Edge(451->458,w:8.0) between GTGTCTT:W9(V451_D-1) and A:W-1(V458_D-1) removing vertex A:W-1(V458_D-1) was concatenated into GTGTCTTA:W9(V451_D-1) Want to move edge Edge(458->459,w:8.0)(A:W-1(V458_D-1)->A:W-1(V459_D-1)) to (GTGTCTTA:W9(V451_D-1)->A:W-1(V459_D-1) adding edge: GTGTCTTA:W9(V451_D-1) to A:W-1(V459_D-1) removing edge Edge(458->459,w:8.0)(A:W-1(V458_D-1)->A:W-1(V459_D-1)) removing edge Edge(451->458,w:8.0)(GTGTCTTA:W9(V451_D-1)->A:W-1(V458_D-1)) Found potential edge: Edge(451->459,w:8.0) between GTGTCTTA:W9(V451_D-1) and A:W-1(V459_D-1) removing vertex A:W-1(V459_D-1) was concatenated into GTGTCTTAA:W9(V451_D-1) Want to move edge Edge(459->460,w:8.0)(A:W-1(V459_D-1)->C:W-1(V460_D-1)) to (GTGTCTTAA:W9(V451_D-1)->C:W-1(V460_D-1) adding edge: GTGTCTTAA:W9(V451_D-1) to C:W-1(V460_D-1) removing edge Edge(459->460,w:8.0)(A:W-1(V459_D-1)->C:W-1(V460_D-1)) removing edge Edge(451->459,w:8.0)(GTGTCTTAA:W9(V451_D-1)->A:W-1(V459_D-1)) Found potential edge: Edge(451->460,w:8.0) between GTGTCTTAA:W9(V451_D-1) and C:W-1(V460_D-1) removing vertex C:W-1(V460_D-1) was concatenated into GTGTCTTAAC:W8(V451_D-1) Want to move edge Edge(460->461,w:8.0)(C:W-1(V460_D-1)->T:W-1(V461_D-1)) to (GTGTCTTAAC:W8(V451_D-1)->T:W-1(V461_D-1) adding edge: GTGTCTTAAC:W8(V451_D-1) to T:W-1(V461_D-1) removing edge Edge(460->461,w:8.0)(C:W-1(V460_D-1)->T:W-1(V461_D-1)) removing edge Edge(451->460,w:8.0)(GTGTCTTAAC:W8(V451_D-1)->C:W-1(V460_D-1)) Found potential edge: Edge(451->461,w:8.0) between GTGTCTTAAC:W8(V451_D-1) and T:W-1(V461_D-1) removing vertex T:W-1(V461_D-1) was concatenated into GTGTCTTAACT:W8(V451_D-1) Want to move edge Edge(461->462,w:8.0)(T:W-1(V461_D-1)->C:W-1(V462_D-1)) to (GTGTCTTAACT:W8(V451_D-1)->C:W-1(V462_D-1) adding edge: GTGTCTTAACT:W8(V451_D-1) to C:W-1(V462_D-1) removing edge Edge(461->462,w:8.0)(T:W-1(V461_D-1)->C:W-1(V462_D-1)) removing edge Edge(451->461,w:8.0)(GTGTCTTAACT:W8(V451_D-1)->T:W-1(V461_D-1)) Found potential edge: Edge(451->462,w:8.0) between GTGTCTTAACT:W8(V451_D-1) and C:W-1(V462_D-1) removing vertex C:W-1(V462_D-1) was concatenated into GTGTCTTAACTC:W8(V451_D-1) Want to move edge Edge(462->463,w:8.0)(C:W-1(V462_D-1)->A:W-1(V463_D-1)) to (GTGTCTTAACTC:W8(V451_D-1)->A:W-1(V463_D-1) adding edge: GTGTCTTAACTC:W8(V451_D-1) to A:W-1(V463_D-1) removing edge Edge(462->463,w:8.0)(C:W-1(V462_D-1)->A:W-1(V463_D-1)) removing edge Edge(451->462,w:8.0)(GTGTCTTAACTC:W8(V451_D-1)->C:W-1(V462_D-1)) Found potential edge: Edge(451->463,w:8.0) between GTGTCTTAACTC:W8(V451_D-1) and A:W-1(V463_D-1) removing vertex A:W-1(V463_D-1) was concatenated into GTGTCTTAACTCA:W8(V451_D-1) Want to move edge Edge(463->464,w:6.0)(A:W-1(V463_D-1)->G:W-1(V464_D-1)) to (GTGTCTTAACTCA:W8(V451_D-1)->G:W-1(V464_D-1) adding edge: GTGTCTTAACTCA:W8(V451_D-1) to G:W-1(V464_D-1) removing edge Edge(463->464,w:6.0)(A:W-1(V463_D-1)->G:W-1(V464_D-1)) removing edge Edge(451->463,w:8.0)(GTGTCTTAACTCA:W8(V451_D-1)->A:W-1(V463_D-1)) Found potential edge: Edge(451->464,w:6.0) between GTGTCTTAACTCA:W8(V451_D-1) and G:W-1(V464_D-1) removing vertex G:W-1(V464_D-1) was concatenated into GTGTCTTAACTCAG:W8(V451_D-1) Want to move edge Edge(464->465,w:6.0)(G:W-1(V464_D-1)->G:W-1(V465_D-1)) to (GTGTCTTAACTCAG:W8(V451_D-1)->G:W-1(V465_D-1) adding edge: GTGTCTTAACTCAG:W8(V451_D-1) to G:W-1(V465_D-1) removing edge Edge(464->465,w:6.0)(G:W-1(V464_D-1)->G:W-1(V465_D-1)) removing edge Edge(451->464,w:6.0)(GTGTCTTAACTCAG:W8(V451_D-1)->G:W-1(V464_D-1)) Found potential edge: Edge(451->465,w:6.0) between GTGTCTTAACTCAG:W8(V451_D-1) and G:W-1(V465_D-1) removing vertex G:W-1(V465_D-1) was concatenated into GTGTCTTAACTCAGG:W8(V451_D-1) Want to move edge Edge(465->466,w:4.0)(G:W-1(V465_D-1)->A:W-1(V466_D-1)) to (GTGTCTTAACTCAGG:W8(V451_D-1)->A:W-1(V466_D-1) adding edge: GTGTCTTAACTCAGG:W8(V451_D-1) to A:W-1(V466_D-1) removing edge Edge(465->466,w:4.0)(G:W-1(V465_D-1)->A:W-1(V466_D-1)) removing edge Edge(451->465,w:6.0)(GTGTCTTAACTCAGG:W8(V451_D-1)->G:W-1(V465_D-1)) Found potential edge: Edge(451->466,w:4.0) between GTGTCTTAACTCAGG:W8(V451_D-1) and A:W-1(V466_D-1) removing vertex A:W-1(V466_D-1) was concatenated into GTGTCTTAACTCAGGA:W8(V451_D-1) Want to move edge Edge(466->467,w:4.0)(A:W-1(V466_D-1)->G:W-1(V467_D-1)) to (GTGTCTTAACTCAGGA:W8(V451_D-1)->G:W-1(V467_D-1) adding edge: GTGTCTTAACTCAGGA:W8(V451_D-1) to G:W-1(V467_D-1) removing edge Edge(466->467,w:4.0)(A:W-1(V466_D-1)->G:W-1(V467_D-1)) removing edge Edge(451->466,w:4.0)(GTGTCTTAACTCAGGA:W8(V451_D-1)->A:W-1(V466_D-1)) Found potential edge: Edge(451->467,w:4.0) between GTGTCTTAACTCAGGA:W8(V451_D-1) and G:W-1(V467_D-1) removing vertex G:W-1(V467_D-1) was concatenated into GTGTCTTAACTCAGGAG:W8(V451_D-1) Want to move edge Edge(467->468,w:2.0)(G:W-1(V467_D-1)->A:W-1(V468_D-1)) to (GTGTCTTAACTCAGGAG:W8(V451_D-1)->A:W-1(V468_D-1) adding edge: GTGTCTTAACTCAGGAG:W8(V451_D-1) to A:W-1(V468_D-1) removing edge Edge(467->468,w:2.0)(G:W-1(V467_D-1)->A:W-1(V468_D-1)) removing edge Edge(451->467,w:4.0)(GTGTCTTAACTCAGGAG:W8(V451_D-1)->G:W-1(V467_D-1)) Found potential edge: Edge(451->468,w:2.0) between GTGTCTTAACTCAGGAG:W8(V451_D-1) and A:W-1(V468_D-1) removing vertex A:W-1(V468_D-1) was concatenated into GTGTCTTAACTCAGGAGA:W7(V451_D-1) Want to move edge Edge(468->469,w:2.0)(A:W-1(V468_D-1)->T:W-1(V469_D-1)) to (GTGTCTTAACTCAGGAGA:W7(V451_D-1)->T:W-1(V469_D-1) adding edge: GTGTCTTAACTCAGGAGA:W7(V451_D-1) to T:W-1(V469_D-1) removing edge Edge(468->469,w:2.0)(A:W-1(V468_D-1)->T:W-1(V469_D-1)) removing edge Edge(451->468,w:2.0)(GTGTCTTAACTCAGGAGA:W7(V451_D-1)->A:W-1(V468_D-1)) Found potential edge: Edge(451->469,w:2.0) between GTGTCTTAACTCAGGAGA:W7(V451_D-1) and T:W-1(V469_D-1) removing vertex T:W-1(V469_D-1) was concatenated into GTGTCTTAACTCAGGAGAT:W7(V451_D-1) Want to move edge Edge(469->470,w:2.0)(T:W-1(V469_D-1)->C:W-1(V470_D-1)) to (GTGTCTTAACTCAGGAGAT:W7(V451_D-1)->C:W-1(V470_D-1) adding edge: GTGTCTTAACTCAGGAGAT:W7(V451_D-1) to C:W-1(V470_D-1) removing edge Edge(469->470,w:2.0)(T:W-1(V469_D-1)->C:W-1(V470_D-1)) removing edge Edge(451->469,w:2.0)(GTGTCTTAACTCAGGAGAT:W7(V451_D-1)->T:W-1(V469_D-1)) Found potential edge: Edge(451->470,w:2.0) between GTGTCTTAACTCAGGAGAT:W7(V451_D-1) and C:W-1(V470_D-1) removing vertex C:W-1(V470_D-1) was concatenated into GTGTCTTAACTCAGGAGATC:W7(V451_D-1) Want to move edge Edge(470->471,w:2.0)(C:W-1(V470_D-1)->A:W-1(V471_D-1)) to (GTGTCTTAACTCAGGAGATC:W7(V451_D-1)->A:W-1(V471_D-1) adding edge: GTGTCTTAACTCAGGAGATC:W7(V451_D-1) to A:W-1(V471_D-1) removing edge Edge(470->471,w:2.0)(C:W-1(V470_D-1)->A:W-1(V471_D-1)) removing edge Edge(451->470,w:2.0)(GTGTCTTAACTCAGGAGATC:W7(V451_D-1)->C:W-1(V470_D-1)) Found potential edge: Edge(451->471,w:2.0) between GTGTCTTAACTCAGGAGATC:W7(V451_D-1) and A:W-1(V471_D-1) removing vertex A:W-1(V471_D-1) was concatenated into GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) Want to move edge Edge(471->472,w:2.0)(A:W-1(V471_D-1)->T:W-1(V472_D-1)) to (GTGTCTTAACTCAGGAGATCA:W6(V451_D-1)->T:W-1(V472_D-1) adding edge: GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) to T:W-1(V472_D-1) removing edge Edge(471->472,w:2.0)(A:W-1(V471_D-1)->T:W-1(V472_D-1)) removing edge Edge(451->471,w:2.0)(GTGTCTTAACTCAGGAGATCA:W6(V451_D-1)->A:W-1(V471_D-1)) Found potential edge: Edge(451->472,w:2.0) between GTGTCTTAACTCAGGAGATCA:W6(V451_D-1) and T:W-1(V472_D-1) removing vertex T:W-1(V472_D-1) was concatenated into GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) Want to move edge Edge(472->473,w:2.0)(T:W-1(V472_D-1)->G:W-1(V473_D-1)) to (GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1)->G:W-1(V473_D-1) adding edge: GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) to G:W-1(V473_D-1) removing edge Edge(472->473,w:2.0)(T:W-1(V472_D-1)->G:W-1(V473_D-1)) removing edge Edge(451->472,w:2.0)(GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1)->T:W-1(V472_D-1)) Found potential edge: Edge(451->473,w:2.0) between GTGTCTTAACTCAGGAGATCAT:W6(V451_D-1) and G:W-1(V473_D-1) removing vertex G:W-1(V473_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) Want to move edge Edge(473->474,w:4.0)(G:W-1(V473_D-1)->G:W-1(V474_D-1)) to (GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1)->G:W-1(V474_D-1) adding edge: GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) to G:W-1(V474_D-1) removing edge Edge(473->474,w:4.0)(G:W-1(V473_D-1)->G:W-1(V474_D-1)) removing edge Edge(451->473,w:2.0)(GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1)->G:W-1(V473_D-1)) Found potential edge: Edge(451->474,w:4.0) between GTGTCTTAACTCAGGAGATCATG:W6(V451_D-1) and G:W-1(V474_D-1) removing vertex G:W-1(V474_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) Want to move edge Edge(474->475,w:2.0)(G:W-1(V474_D-1)->T:W-1(V475_D-1)) to (GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1)->T:W-1(V475_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) to T:W-1(V475_D-1) removing edge Edge(474->475,w:2.0)(G:W-1(V474_D-1)->T:W-1(V475_D-1)) removing edge Edge(451->474,w:4.0)(GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1)->G:W-1(V474_D-1)) Found potential edge: Edge(451->475,w:2.0) between GTGTCTTAACTCAGGAGATCATGG:W6(V451_D-1) and T:W-1(V475_D-1) removing vertex T:W-1(V475_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) Want to move edge Edge(475->476,w:2.0)(T:W-1(V475_D-1)->A:W-1(V476_D-1)) to (GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1)->A:W-1(V476_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) to A:W-1(V476_D-1) removing edge Edge(475->476,w:2.0)(T:W-1(V475_D-1)->A:W-1(V476_D-1)) removing edge Edge(451->475,w:2.0)(GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1)->T:W-1(V475_D-1)) Found potential edge: Edge(451->476,w:2.0) between GTGTCTTAACTCAGGAGATCATGGT:W6(V451_D-1) and A:W-1(V476_D-1) removing vertex A:W-1(V476_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) Want to move edge Edge(476->477,w:2.0)(A:W-1(V476_D-1)->G:W-1(V477_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1)->G:W-1(V477_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) to G:W-1(V477_D-1) removing edge Edge(476->477,w:2.0)(A:W-1(V476_D-1)->G:W-1(V477_D-1)) removing edge Edge(451->476,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1)->A:W-1(V476_D-1)) Found potential edge: Edge(451->477,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTA:W6(V451_D-1) and G:W-1(V477_D-1) removing vertex G:W-1(V477_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) Want to move edge Edge(477->478,w:2.0)(G:W-1(V477_D-1)->G:W-1(V478_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1)->G:W-1(V478_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) to G:W-1(V478_D-1) removing edge Edge(477->478,w:2.0)(G:W-1(V477_D-1)->G:W-1(V478_D-1)) removing edge Edge(451->477,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1)->G:W-1(V477_D-1)) Found potential edge: Edge(451->478,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAG:W5(V451_D-1) and G:W-1(V478_D-1) removing vertex G:W-1(V478_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) Want to move edge Edge(478->479,w:2.0)(G:W-1(V478_D-1)->G:W-1(V479_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1)->G:W-1(V479_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) to G:W-1(V479_D-1) removing edge Edge(478->479,w:2.0)(G:W-1(V478_D-1)->G:W-1(V479_D-1)) removing edge Edge(451->478,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1)->G:W-1(V478_D-1)) Found potential edge: Edge(451->479,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGG:W5(V451_D-1) and G:W-1(V479_D-1) removing vertex G:W-1(V479_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) Want to move edge Edge(479->480,w:2.0)(G:W-1(V479_D-1)->A:W-1(V480_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1)->A:W-1(V480_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) to A:W-1(V480_D-1) removing edge Edge(479->480,w:2.0)(G:W-1(V479_D-1)->A:W-1(V480_D-1)) removing edge Edge(451->479,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1)->G:W-1(V479_D-1)) Found potential edge: Edge(451->480,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGGG:W5(V451_D-1) and A:W-1(V480_D-1) removing vertex A:W-1(V480_D-1) was concatenated into GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) Want to move edge Edge(480->481,w:2.0)(A:W-1(V480_D-1)->A:W-1(V481_D-1)) to (GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1)->A:W-1(V481_D-1) adding edge: GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) to A:W-1(V481_D-1) removing edge Edge(480->481,w:2.0)(A:W-1(V480_D-1)->A:W-1(V481_D-1)) removing edge Edge(451->480,w:2.0)(GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1)->A:W-1(V480_D-1)) Found potential edge: Edge(451->481,w:2.0) between GTGTCTTAACTCAGGAGATCATGGTAGGGA:W5(V451_D-1) and A:W-1(V481_D-1) removing vertex A:W-1(V481_D-1) was concatenated into GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) Want to move edge Edge(481->482,w:2.0)(A:W-1(V481_D-1)->G:W-1(V482_D-1)) to (GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1)->G:W-1(V482_D-1) adding edge: GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) to G:W-1(V482_D-1) removing edge Edge(481->482,w:2.0)(A:W-1(V481_D-1)->G:W-1(V482_D-1)) removing edge Edge(451->481,w:2.0)(GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1)->A:W-1(V481_D-1)) Found potential edge: Edge(451->482,w:2.0) between GTGTCTTAAC...TGGTAGGGAA:W5(V451_D-1) and G:W-1(V482_D-1) removing vertex G:W-1(V482_D-1) was concatenated into GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) Want to move edge Edge(482->483,w:2.0)(G:W-1(V482_D-1)->G:W-1(V483_D-1)) to (GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1)->G:W-1(V483_D-1) adding edge: GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) to G:W-1(V483_D-1) removing edge Edge(482->483,w:2.0)(G:W-1(V482_D-1)->G:W-1(V483_D-1)) removing edge Edge(451->482,w:2.0)(GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1)->G:W-1(V482_D-1)) Found potential edge: Edge(451->483,w:2.0) between GTGTCTTAAC...GGTAGGGAAG:W5(V451_D-1) and G:W-1(V483_D-1) removing vertex G:W-1(V483_D-1) was concatenated into GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) Want to move edge Edge(483->484,w:2.0)(G:W-1(V483_D-1)->G:W-1(V484_D-1)) to (GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1)->G:W-1(V484_D-1) adding edge: GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) to G:W-1(V484_D-1) removing edge Edge(483->484,w:2.0)(G:W-1(V483_D-1)->G:W-1(V484_D-1)) removing edge Edge(451->483,w:2.0)(GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1)->G:W-1(V483_D-1)) Found potential edge: Edge(451->484,w:2.0) between GTGTCTTAAC...GTAGGGAAGG:W5(V451_D-1) and G:W-1(V484_D-1) removing vertex G:W-1(V484_D-1) was concatenated into GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) Want to move edge Edge(484->485,w:2.0)(G:W-1(V484_D-1)->G:W-1(V485_D-1)) to (GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1)->G:W-1(V485_D-1) adding edge: GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) to G:W-1(V485_D-1) removing edge Edge(484->485,w:2.0)(G:W-1(V484_D-1)->G:W-1(V485_D-1)) removing edge Edge(451->484,w:2.0)(GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1)->G:W-1(V484_D-1)) Found potential edge: Edge(451->485,w:2.0) between GTGTCTTAAC...TAGGGAAGGG:W5(V451_D-1) and G:W-1(V485_D-1) removing vertex G:W-1(V485_D-1) was concatenated into GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) Want to move edge Edge(485->486,w:4.0)(G:W-1(V485_D-1)->T:W-1(V486_D-1)) to (GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1)->T:W-1(V486_D-1) adding edge: GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) to T:W-1(V486_D-1) removing edge Edge(485->486,w:4.0)(G:W-1(V485_D-1)->T:W-1(V486_D-1)) removing edge Edge(451->485,w:2.0)(GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1)->G:W-1(V485_D-1)) Found potential edge: Edge(451->486,w:4.0) between GTGTCTTAAC...AGGGAAGGGG:W5(V451_D-1) and T:W-1(V486_D-1) removing vertex T:W-1(V486_D-1) was concatenated into GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) Want to move edge Edge(486->487,w:4.0)(T:W-1(V486_D-1)->C:W-1(V487_D-1)) to (GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1)->C:W-1(V487_D-1) adding edge: GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) to C:W-1(V487_D-1) removing edge Edge(486->487,w:4.0)(T:W-1(V486_D-1)->C:W-1(V487_D-1)) removing edge Edge(451->486,w:4.0)(GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1)->T:W-1(V486_D-1)) Found potential edge: Edge(451->487,w:4.0) between GTGTCTTAAC...GGGAAGGGGT:W5(V451_D-1) and C:W-1(V487_D-1) removing vertex C:W-1(V487_D-1) was concatenated into GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) Want to move edge Edge(487->488,w:4.0)(C:W-1(V487_D-1)->A:W-1(V488_D-1)) to (GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1)->A:W-1(V488_D-1) adding edge: GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) to A:W-1(V488_D-1) removing edge Edge(487->488,w:4.0)(C:W-1(V487_D-1)->A:W-1(V488_D-1)) removing edge Edge(451->487,w:4.0)(GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1)->C:W-1(V487_D-1)) Found potential edge: Edge(451->488,w:4.0) between GTGTCTTAAC...GGAAGGGGTC:W5(V451_D-1) and A:W-1(V488_D-1) removing vertex A:W-1(V488_D-1) was concatenated into GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) Want to move edge Edge(488->489,w:4.0)(A:W-1(V488_D-1)->G:W-1(V489_D-1)) to (GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1)->G:W-1(V489_D-1) adding edge: GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) to G:W-1(V489_D-1) removing edge Edge(488->489,w:4.0)(A:W-1(V488_D-1)->G:W-1(V489_D-1)) removing edge Edge(451->488,w:4.0)(GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1)->A:W-1(V488_D-1)) Found potential edge: Edge(451->489,w:4.0) between GTGTCTTAAC...GAAGGGGTCA:W5(V451_D-1) and G:W-1(V489_D-1) removing vertex G:W-1(V489_D-1) was concatenated into GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) Want to move edge Edge(489->490,w:4.0)(G:W-1(V489_D-1)->G:W-1(V490_D-1)) to (GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1)->G:W-1(V490_D-1) adding edge: GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) to G:W-1(V490_D-1) removing edge Edge(489->490,w:4.0)(G:W-1(V489_D-1)->G:W-1(V490_D-1)) removing edge Edge(451->489,w:4.0)(GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1)->G:W-1(V489_D-1)) Found potential edge: Edge(451->490,w:4.0) between GTGTCTTAAC...AAGGGGTCAG:W5(V451_D-1) and G:W-1(V490_D-1) removing vertex G:W-1(V490_D-1) was concatenated into GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) Want to move edge Edge(490->491,w:4.0)(G:W-1(V490_D-1)->C:W-1(V491_D-1)) to (GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1)->C:W-1(V491_D-1) adding edge: GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) to C:W-1(V491_D-1) removing edge Edge(490->491,w:4.0)(G:W-1(V490_D-1)->C:W-1(V491_D-1)) removing edge Edge(451->490,w:4.0)(GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1)->G:W-1(V490_D-1)) Found potential edge: Edge(451->491,w:4.0) between GTGTCTTAAC...AGGGGTCAGG:W5(V451_D-1) and C:W-1(V491_D-1) removing vertex C:W-1(V491_D-1) was concatenated into GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) Want to move edge Edge(491->492,w:4.0)(C:W-1(V491_D-1)->C:W-1(V492_D-1)) to (GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1)->C:W-1(V492_D-1) adding edge: GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) to C:W-1(V492_D-1) removing edge Edge(491->492,w:4.0)(C:W-1(V491_D-1)->C:W-1(V492_D-1)) removing edge Edge(451->491,w:4.0)(GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1)->C:W-1(V491_D-1)) Found potential edge: Edge(451->492,w:4.0) between GTGTCTTAAC...GGGGTCAGGC:W5(V451_D-1) and C:W-1(V492_D-1) removing vertex C:W-1(V492_D-1) was concatenated into GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) Want to move edge Edge(492->493,w:4.0)(C:W-1(V492_D-1)->A:W-1(V493_D-1)) to (GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1)->A:W-1(V493_D-1) adding edge: GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) to A:W-1(V493_D-1) removing edge Edge(492->493,w:4.0)(C:W-1(V492_D-1)->A:W-1(V493_D-1)) removing edge Edge(451->492,w:4.0)(GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1)->C:W-1(V492_D-1)) Found potential edge: Edge(451->493,w:4.0) between GTGTCTTAAC...GGGTCAGGCC:W5(V451_D-1) and A:W-1(V493_D-1) removing vertex A:W-1(V493_D-1) was concatenated into GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) Want to move edge Edge(493->494,w:4.0)(A:W-1(V493_D-1)->C:W-1(V494_D-1)) to (GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1)->C:W-1(V494_D-1) adding edge: GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) to C:W-1(V494_D-1) removing edge Edge(493->494,w:4.0)(A:W-1(V493_D-1)->C:W-1(V494_D-1)) removing edge Edge(451->493,w:4.0)(GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1)->A:W-1(V493_D-1)) Found potential edge: Edge(451->494,w:4.0) between GTGTCTTAAC...GGTCAGGCCA:W5(V451_D-1) and C:W-1(V494_D-1) removing vertex C:W-1(V494_D-1) was concatenated into GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) Want to move edge Edge(494->495,w:4.0)(C:W-1(V494_D-1)->T:W-1(V495_D-1)) to (GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1)->T:W-1(V495_D-1) adding edge: GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) to T:W-1(V495_D-1) removing edge Edge(494->495,w:4.0)(C:W-1(V494_D-1)->T:W-1(V495_D-1)) removing edge Edge(451->494,w:4.0)(GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1)->C:W-1(V494_D-1)) Found potential edge: Edge(451->495,w:4.0) between GTGTCTTAAC...GTCAGGCCAC:W5(V451_D-1) and T:W-1(V495_D-1) removing vertex T:W-1(V495_D-1) was concatenated into GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) Want to move edge Edge(495->496,w:4.0)(T:W-1(V495_D-1)->T:W-1(V496_D-1)) to (GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1)->T:W-1(V496_D-1) adding edge: GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) to T:W-1(V496_D-1) removing edge Edge(495->496,w:4.0)(T:W-1(V495_D-1)->T:W-1(V496_D-1)) removing edge Edge(451->495,w:4.0)(GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1)->T:W-1(V495_D-1)) Found potential edge: Edge(451->496,w:4.0) between GTGTCTTAAC...TCAGGCCACT:W5(V451_D-1) and T:W-1(V496_D-1) removing vertex T:W-1(V496_D-1) was concatenated into GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) Want to move edge Edge(496->497,w:4.0)(T:W-1(V496_D-1)->C:W-1(V497_D-1)) to (GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1)->C:W-1(V497_D-1) adding edge: GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) to C:W-1(V497_D-1) removing edge Edge(496->497,w:4.0)(T:W-1(V496_D-1)->C:W-1(V497_D-1)) removing edge Edge(451->496,w:4.0)(GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1)->T:W-1(V496_D-1)) Found potential edge: Edge(451->497,w:4.0) between GTGTCTTAAC...CAGGCCACTT:W4(V451_D-1) and C:W-1(V497_D-1) removing vertex C:W-1(V497_D-1) was concatenated into GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) Want to move edge Edge(497->498,w:4.0)(C:W-1(V497_D-1)->A:W-1(V498_D-1)) to (GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1)->A:W-1(V498_D-1) adding edge: GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) to A:W-1(V498_D-1) removing edge Edge(497->498,w:4.0)(C:W-1(V497_D-1)->A:W-1(V498_D-1)) removing edge Edge(451->497,w:4.0)(GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1)->C:W-1(V497_D-1)) Found potential edge: Edge(451->498,w:4.0) between GTGTCTTAAC...AGGCCACTTC:W4(V451_D-1) and A:W-1(V498_D-1) removing vertex A:W-1(V498_D-1) was concatenated into GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) Want to move edge Edge(498->499,w:4.0)(A:W-1(V498_D-1)->C:W-1(V499_D-1)) to (GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1)->C:W-1(V499_D-1) adding edge: GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) to C:W-1(V499_D-1) removing edge Edge(498->499,w:4.0)(A:W-1(V498_D-1)->C:W-1(V499_D-1)) removing edge Edge(451->498,w:4.0)(GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1)->A:W-1(V498_D-1)) Found potential edge: Edge(451->499,w:4.0) between GTGTCTTAAC...GGCCACTTCA:W4(V451_D-1) and C:W-1(V499_D-1) removing vertex C:W-1(V499_D-1) was concatenated into GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) Want to move edge Edge(499->500,w:4.0)(C:W-1(V499_D-1)->A:W-1(V500_D-1)) to (GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1)->A:W-1(V500_D-1) adding edge: GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) to A:W-1(V500_D-1) removing edge Edge(499->500,w:4.0)(C:W-1(V499_D-1)->A:W-1(V500_D-1)) removing edge Edge(451->499,w:4.0)(GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1)->C:W-1(V499_D-1)) Found potential edge: Edge(451->500,w:4.0) between GTGTCTTAAC...GCCACTTCAC:W4(V451_D-1) and A:W-1(V500_D-1) removing vertex A:W-1(V500_D-1) was concatenated into GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) Want to move edge Edge(500->501,w:4.0)(A:W-1(V500_D-1)->A:W-1(V501_D-1)) to (GTGTCTTAAC...CCACTTCACA:W4(V451_D-1)->A:W-1(V501_D-1) adding edge: GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) to A:W-1(V501_D-1) removing edge Edge(500->501,w:4.0)(A:W-1(V500_D-1)->A:W-1(V501_D-1)) removing edge Edge(451->500,w:4.0)(GTGTCTTAAC...CCACTTCACA:W4(V451_D-1)->A:W-1(V500_D-1)) Found potential edge: Edge(451->501,w:4.0) between GTGTCTTAAC...CCACTTCACA:W4(V451_D-1) and A:W-1(V501_D-1) removing vertex A:W-1(V501_D-1) was concatenated into GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) Want to move edge Edge(501->502,w:4.0)(A:W-1(V501_D-1)->G:W-1(V502_D-1)) to (GTGTCTTAAC...CACTTCACAA:W4(V451_D-1)->G:W-1(V502_D-1) adding edge: GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) to G:W-1(V502_D-1) removing edge Edge(501->502,w:4.0)(A:W-1(V501_D-1)->G:W-1(V502_D-1)) removing edge Edge(451->501,w:4.0)(GTGTCTTAAC...CACTTCACAA:W4(V451_D-1)->A:W-1(V501_D-1)) Found potential edge: Edge(451->502,w:4.0) between GTGTCTTAAC...CACTTCACAA:W4(V451_D-1) and G:W-1(V502_D-1) removing vertex G:W-1(V502_D-1) was concatenated into GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) Want to move edge Edge(502->503,w:6.0)(G:W-1(V502_D-1)->G:W-1(V503_D-1)) to (GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1)->G:W-1(V503_D-1) adding edge: GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) to G:W-1(V503_D-1) removing edge Edge(502->503,w:6.0)(G:W-1(V502_D-1)->G:W-1(V503_D-1)) removing edge Edge(451->502,w:4.0)(GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1)->G:W-1(V502_D-1)) Found potential edge: Edge(451->503,w:6.0) between GTGTCTTAAC...ACTTCACAAG:W4(V451_D-1) and G:W-1(V503_D-1) removing vertex G:W-1(V503_D-1) was concatenated into GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) Want to move edge Edge(503->504,w:6.0)(G:W-1(V503_D-1)->A:W-1(V504_D-1)) to (GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1)->A:W-1(V504_D-1) adding edge: GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) to A:W-1(V504_D-1) removing edge Edge(503->504,w:6.0)(G:W-1(V503_D-1)->A:W-1(V504_D-1)) removing edge Edge(451->503,w:6.0)(GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1)->G:W-1(V503_D-1)) Found potential edge: Edge(451->504,w:6.0) between GTGTCTTAAC...CTTCACAAGG:W4(V451_D-1) and A:W-1(V504_D-1) removing vertex A:W-1(V504_D-1) was concatenated into GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) Want to move edge Edge(504->505,w:8.0)(A:W-1(V504_D-1)->G:W-1(V505_D-1)) to (GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1)->G:W-1(V505_D-1) adding edge: GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) to G:W-1(V505_D-1) removing edge Edge(504->505,w:8.0)(A:W-1(V504_D-1)->G:W-1(V505_D-1)) removing edge Edge(451->504,w:6.0)(GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1)->A:W-1(V504_D-1)) Found potential edge: Edge(451->505,w:8.0) between GTGTCTTAAC...TTCACAAGGA:W4(V451_D-1) and G:W-1(V505_D-1) removing vertex G:W-1(V505_D-1) was concatenated into GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) Want to move edge Edge(505->506,w:8.0)(G:W-1(V505_D-1)->C:W-1(V506_D-1)) to (GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1)->C:W-1(V506_D-1) adding edge: GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) to C:W-1(V506_D-1) removing edge Edge(505->506,w:8.0)(G:W-1(V505_D-1)->C:W-1(V506_D-1)) removing edge Edge(451->505,w:8.0)(GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1)->G:W-1(V505_D-1)) Found potential edge: Edge(451->506,w:8.0) between GTGTCTTAAC...TCACAAGGAG:W5(V451_D-1) and C:W-1(V506_D-1) removing vertex C:W-1(V506_D-1) was concatenated into GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) Want to move edge Edge(506->507,w:8.0)(C:W-1(V506_D-1)->A:W-1(V507_D-1)) to (GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1)->A:W-1(V507_D-1) adding edge: GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) to A:W-1(V507_D-1) removing edge Edge(506->507,w:8.0)(C:W-1(V506_D-1)->A:W-1(V507_D-1)) removing edge Edge(451->506,w:8.0)(GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1)->C:W-1(V506_D-1)) Found potential edge: Edge(451->507,w:8.0) between GTGTCTTAAC...CACAAGGAGC:W5(V451_D-1) and A:W-1(V507_D-1) removing vertex A:W-1(V507_D-1) was concatenated into GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) Want to move edge Edge(507->508,w:10.0)(A:W-1(V507_D-1)->G:W-1(V508_D-1)) to (GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1)->G:W-1(V508_D-1) adding edge: GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) to G:W-1(V508_D-1) removing edge Edge(507->508,w:10.0)(A:W-1(V507_D-1)->G:W-1(V508_D-1)) removing edge Edge(451->507,w:8.0)(GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1)->A:W-1(V507_D-1)) Found potential edge: Edge(451->508,w:10.0) between GTGTCTTAAC...ACAAGGAGCA:W5(V451_D-1) and G:W-1(V508_D-1) removing vertex G:W-1(V508_D-1) was concatenated into GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) Want to move edge Edge(508->509,w:10.0)(G:W-1(V508_D-1)->A:W-1(V509_D-1)) to (GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1)->A:W-1(V509_D-1) adding edge: GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) to A:W-1(V509_D-1) removing edge Edge(508->509,w:10.0)(G:W-1(V508_D-1)->A:W-1(V509_D-1)) removing edge Edge(451->508,w:10.0)(GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1)->G:W-1(V508_D-1)) Found potential edge: Edge(451->509,w:10.0) between GTGTCTTAAC...CAAGGAGCAG:W5(V451_D-1) and A:W-1(V509_D-1) removing vertex A:W-1(V509_D-1) was concatenated into GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) Want to move edge Edge(509->510,w:10.0)(A:W-1(V509_D-1)->G:W-1(V510_D-1)) to (GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1)->G:W-1(V510_D-1) adding edge: GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) to G:W-1(V510_D-1) removing edge Edge(509->510,w:10.0)(A:W-1(V509_D-1)->G:W-1(V510_D-1)) removing edge Edge(451->509,w:10.0)(GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1)->A:W-1(V509_D-1)) Found potential edge: Edge(451->510,w:10.0) between GTGTCTTAAC...AAGGAGCAGA:W5(V451_D-1) and G:W-1(V510_D-1) removing vertex G:W-1(V510_D-1) was concatenated into GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) Want to move edge Edge(510->511,w:10.0)(G:W-1(V510_D-1)->T:W-1(V511_D-1)) to (GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1)->T:W-1(V511_D-1) adding edge: GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) to T:W-1(V511_D-1) removing edge Edge(510->511,w:10.0)(G:W-1(V510_D-1)->T:W-1(V511_D-1)) removing edge Edge(451->510,w:10.0)(GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1)->G:W-1(V510_D-1)) Found potential edge: Edge(451->511,w:10.0) between GTGTCTTAAC...AGGAGCAGAG:W5(V451_D-1) and T:W-1(V511_D-1) removing vertex T:W-1(V511_D-1) was concatenated into GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) Want to move edge Edge(511->512,w:10.0)(T:W-1(V511_D-1)->T:W-1(V512_D-1)) to (GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1)->T:W-1(V512_D-1) adding edge: GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) to T:W-1(V512_D-1) removing edge Edge(511->512,w:10.0)(T:W-1(V511_D-1)->T:W-1(V512_D-1)) removing edge Edge(451->511,w:10.0)(GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1)->T:W-1(V511_D-1)) Found potential edge: Edge(451->512,w:10.0) between GTGTCTTAAC...GGAGCAGAGT:W5(V451_D-1) and T:W-1(V512_D-1) removing vertex T:W-1(V512_D-1) was concatenated into GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) Want to move edge Edge(512->513,w:10.0)(T:W-1(V512_D-1)->A:W-1(V513_D-1)) to (GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1)->A:W-1(V513_D-1) adding edge: GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) to A:W-1(V513_D-1) removing edge Edge(512->513,w:10.0)(T:W-1(V512_D-1)->A:W-1(V513_D-1)) removing edge Edge(451->512,w:10.0)(GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1)->T:W-1(V512_D-1)) Found potential edge: Edge(451->513,w:10.0) between GTGTCTTAAC...GAGCAGAGTT:W5(V451_D-1) and A:W-1(V513_D-1) removing vertex A:W-1(V513_D-1) was concatenated into GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) Want to move edge Edge(513->514,w:10.0)(A:W-1(V513_D-1)->G:W-1(V514_D-1)) to (GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1)->G:W-1(V514_D-1) adding edge: GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) to G:W-1(V514_D-1) removing edge Edge(513->514,w:10.0)(A:W-1(V513_D-1)->G:W-1(V514_D-1)) removing edge Edge(451->513,w:10.0)(GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1)->A:W-1(V513_D-1)) Found potential edge: Edge(451->514,w:10.0) between GTGTCTTAAC...AGCAGAGTTA:W5(V451_D-1) and G:W-1(V514_D-1) removing vertex G:W-1(V514_D-1) was concatenated into GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) Want to move edge Edge(514->515,w:10.0)(G:W-1(V514_D-1)->G:W-1(V515_D-1)) to (GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1)->G:W-1(V515_D-1) adding edge: GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) to G:W-1(V515_D-1) removing edge Edge(514->515,w:10.0)(G:W-1(V514_D-1)->G:W-1(V515_D-1)) removing edge Edge(451->514,w:10.0)(GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1)->G:W-1(V514_D-1)) Found potential edge: Edge(451->515,w:10.0) between GTGTCTTAAC...GCAGAGTTAG:W5(V451_D-1) and G:W-1(V515_D-1) removing vertex G:W-1(V515_D-1) was concatenated into GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) Want to move edge Edge(515->516,w:10.0)(G:W-1(V515_D-1)->A:W-1(V516_D-1)) to (GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1)->A:W-1(V516_D-1) adding edge: GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) to A:W-1(V516_D-1) removing edge Edge(515->516,w:10.0)(G:W-1(V515_D-1)->A:W-1(V516_D-1)) removing edge Edge(451->515,w:10.0)(GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1)->G:W-1(V515_D-1)) Found potential edge: Edge(451->516,w:10.0) between GTGTCTTAAC...CAGAGTTAGG:W5(V451_D-1) and A:W-1(V516_D-1) removing vertex A:W-1(V516_D-1) was concatenated into GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) Want to move edge Edge(516->517,w:10.0)(A:W-1(V516_D-1)->A:W-1(V517_D-1)) to (GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1)->A:W-1(V517_D-1) adding edge: GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) to A:W-1(V517_D-1) removing edge Edge(516->517,w:10.0)(A:W-1(V516_D-1)->A:W-1(V517_D-1)) removing edge Edge(451->516,w:10.0)(GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1)->A:W-1(V516_D-1)) Found potential edge: Edge(451->517,w:10.0) between GTGTCTTAAC...AGAGTTAGGA:W5(V451_D-1) and A:W-1(V517_D-1) removing vertex A:W-1(V517_D-1) was concatenated into GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) Want to move edge Edge(517->518,w:10.0)(A:W-1(V517_D-1)->G:W-1(V518_D-1)) to (GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1)->G:W-1(V518_D-1) adding edge: GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) to G:W-1(V518_D-1) removing edge Edge(517->518,w:10.0)(A:W-1(V517_D-1)->G:W-1(V518_D-1)) removing edge Edge(451->517,w:10.0)(GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1)->A:W-1(V517_D-1)) Found potential edge: Edge(451->518,w:10.0) between GTGTCTTAAC...GAGTTAGGAA:W5(V451_D-1) and G:W-1(V518_D-1) removing vertex G:W-1(V518_D-1) was concatenated into GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) Want to move edge Edge(518->519,w:10.0)(G:W-1(V518_D-1)->C:W-1(V519_D-1)) to (GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1)->C:W-1(V519_D-1) adding edge: GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) to C:W-1(V519_D-1) removing edge Edge(518->519,w:10.0)(G:W-1(V518_D-1)->C:W-1(V519_D-1)) removing edge Edge(451->518,w:10.0)(GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1)->G:W-1(V518_D-1)) Found potential edge: Edge(451->519,w:10.0) between GTGTCTTAAC...AGTTAGGAAG:W6(V451_D-1) and C:W-1(V519_D-1) removing vertex C:W-1(V519_D-1) was concatenated into GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) Want to move edge Edge(519->520,w:10.0)(C:W-1(V519_D-1)->T:W-1(V520_D-1)) to (GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1)->T:W-1(V520_D-1) adding edge: GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) to T:W-1(V520_D-1) removing edge Edge(519->520,w:10.0)(C:W-1(V519_D-1)->T:W-1(V520_D-1)) removing edge Edge(451->519,w:10.0)(GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1)->C:W-1(V519_D-1)) Found potential edge: Edge(451->520,w:10.0) between GTGTCTTAAC...GTTAGGAAGC:W6(V451_D-1) and T:W-1(V520_D-1) removing vertex T:W-1(V520_D-1) was concatenated into GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) Want to move edge Edge(520->521,w:10.0)(T:W-1(V520_D-1)->C:W-1(V521_D-1)) to (GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1)->C:W-1(V521_D-1) adding edge: GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) to C:W-1(V521_D-1) removing edge Edge(520->521,w:10.0)(T:W-1(V520_D-1)->C:W-1(V521_D-1)) removing edge Edge(451->520,w:10.0)(GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1)->T:W-1(V520_D-1)) Found potential edge: Edge(451->521,w:10.0) between GTGTCTTAAC...TTAGGAAGCT:W6(V451_D-1) and C:W-1(V521_D-1) removing vertex C:W-1(V521_D-1) was concatenated into GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) Want to move edge Edge(521->522,w:10.0)(C:W-1(V521_D-1)->C:W-1(V522_D-1)) to (GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1)->C:W-1(V522_D-1) adding edge: GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) to C:W-1(V522_D-1) removing edge Edge(521->522,w:10.0)(C:W-1(V521_D-1)->C:W-1(V522_D-1)) removing edge Edge(451->521,w:10.0)(GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1)->C:W-1(V521_D-1)) Found potential edge: Edge(451->522,w:10.0) between GTGTCTTAAC...TAGGAAGCTC:W6(V451_D-1) and C:W-1(V522_D-1) removing vertex C:W-1(V522_D-1) was concatenated into GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) Want to move edge Edge(522->523,w:10.0)(C:W-1(V522_D-1)->C:W-1(V523_D-1)) to (GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1)->C:W-1(V523_D-1) adding edge: GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) to C:W-1(V523_D-1) removing edge Edge(522->523,w:10.0)(C:W-1(V522_D-1)->C:W-1(V523_D-1)) removing edge Edge(451->522,w:10.0)(GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1)->C:W-1(V522_D-1)) Found potential edge: Edge(451->523,w:10.0) between GTGTCTTAAC...AGGAAGCTCC:W6(V451_D-1) and C:W-1(V523_D-1) removing vertex C:W-1(V523_D-1) was concatenated into GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) Want to move edge Edge(523->524,w:10.0)(C:W-1(V523_D-1)->T:W-1(V524_D-1)) to (GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1)->T:W-1(V524_D-1) adding edge: GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) to T:W-1(V524_D-1) removing edge Edge(523->524,w:10.0)(C:W-1(V523_D-1)->T:W-1(V524_D-1)) removing edge Edge(451->523,w:10.0)(GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1)->C:W-1(V523_D-1)) Found potential edge: Edge(451->524,w:10.0) between GTGTCTTAAC...GGAAGCTCCC:W6(V451_D-1) and T:W-1(V524_D-1) removing vertex T:W-1(V524_D-1) was concatenated into GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) Want to move edge Edge(524->525,w:8.0)(T:W-1(V524_D-1)->G:W-1(V525_D-1)) to (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->G:W-1(V525_D-1) adding edge: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) to G:W-1(V525_D-1) Want to move edge Edge(524->813,w:2.0)(T:W-1(V524_D-1)->C:W-1(V813_D-1)) to (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->C:W-1(V813_D-1) adding edge: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) to C:W-1(V813_D-1) removing edge Edge(524->525,w:8.0)(T:W-1(V524_D-1)->G:W-1(V525_D-1)) removing edge Edge(524->813,w:2.0)(T:W-1(V524_D-1)->C:W-1(V813_D-1)) removing edge Edge(451->524,w:10.0)(GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)->T:W-1(V524_D-1)) Found potential edge: Edge(525->526,w:6.0) between G:W-1(V525_D-1) and A:W-1(V526_D-1) removing vertex A:W-1(V526_D-1) was concatenated into GA:W6(V525_D-1) Want to move edge Edge(526->527,w:6.0)(A:W-1(V526_D-1)->G:W-1(V527_D-1)) to (GA:W6(V525_D-1)->G:W-1(V527_D-1) adding edge: GA:W6(V525_D-1) to G:W-1(V527_D-1) removing edge Edge(526->527,w:6.0)(A:W-1(V526_D-1)->G:W-1(V527_D-1)) removing edge Edge(525->526,w:6.0)(GA:W6(V525_D-1)->A:W-1(V526_D-1)) Found potential edge: Edge(525->527,w:6.0) between GA:W6(V525_D-1) and G:W-1(V527_D-1) removing vertex G:W-1(V527_D-1) was concatenated into GAG:W6(V525_D-1) Want to move edge Edge(527->528,w:6.0)(G:W-1(V527_D-1)->C:W-1(V528_D-1)) to (GAG:W6(V525_D-1)->C:W-1(V528_D-1) adding edge: GAG:W6(V525_D-1) to C:W-1(V528_D-1) removing edge Edge(527->528,w:6.0)(G:W-1(V527_D-1)->C:W-1(V528_D-1)) removing edge Edge(525->527,w:6.0)(GAG:W6(V525_D-1)->G:W-1(V527_D-1)) Found potential edge: Edge(525->528,w:6.0) between GAG:W6(V525_D-1) and C:W-1(V528_D-1) removing vertex C:W-1(V528_D-1) was concatenated into GAGC:W6(V525_D-1) Want to move edge Edge(528->529,w:6.0)(C:W-1(V528_D-1)->A:W-1(V529_D-1)) to (GAGC:W6(V525_D-1)->A:W-1(V529_D-1) adding edge: GAGC:W6(V525_D-1) to A:W-1(V529_D-1) removing edge Edge(528->529,w:6.0)(C:W-1(V528_D-1)->A:W-1(V529_D-1)) removing edge Edge(525->528,w:6.0)(GAGC:W6(V525_D-1)->C:W-1(V528_D-1)) Found potential edge: Edge(525->529,w:6.0) between GAGC:W6(V525_D-1) and A:W-1(V529_D-1) removing vertex A:W-1(V529_D-1) was concatenated into GAGCA:W6(V525_D-1) Want to move edge Edge(529->530,w:6.0)(A:W-1(V529_D-1)->C:W-1(V530_D-1)) to (GAGCA:W6(V525_D-1)->C:W-1(V530_D-1) adding edge: GAGCA:W6(V525_D-1) to C:W-1(V530_D-1) removing edge Edge(529->530,w:6.0)(A:W-1(V529_D-1)->C:W-1(V530_D-1)) removing edge Edge(525->529,w:6.0)(GAGCA:W6(V525_D-1)->A:W-1(V529_D-1)) Found potential edge: Edge(525->530,w:6.0) between GAGCA:W6(V525_D-1) and C:W-1(V530_D-1) removing vertex C:W-1(V530_D-1) was concatenated into GAGCAC:W6(V525_D-1) Want to move edge Edge(530->531,w:6.0)(C:W-1(V530_D-1)->T:W-1(V531_D-1)) to (GAGCAC:W6(V525_D-1)->T:W-1(V531_D-1) adding edge: GAGCAC:W6(V525_D-1) to T:W-1(V531_D-1) removing edge Edge(530->531,w:6.0)(C:W-1(V530_D-1)->T:W-1(V531_D-1)) removing edge Edge(525->530,w:6.0)(GAGCAC:W6(V525_D-1)->C:W-1(V530_D-1)) Found potential edge: Edge(525->531,w:6.0) between GAGCAC:W6(V525_D-1) and T:W-1(V531_D-1) removing vertex T:W-1(V531_D-1) was concatenated into GAGCACT:W6(V525_D-1) Want to move edge Edge(531->532,w:6.0)(T:W-1(V531_D-1)->C:W-1(V532_D-1)) to (GAGCACT:W6(V525_D-1)->C:W-1(V532_D-1) adding edge: GAGCACT:W6(V525_D-1) to C:W-1(V532_D-1) removing edge Edge(531->532,w:6.0)(T:W-1(V531_D-1)->C:W-1(V532_D-1)) removing edge Edge(525->531,w:6.0)(GAGCACT:W6(V525_D-1)->T:W-1(V531_D-1)) Found potential edge: Edge(525->532,w:6.0) between GAGCACT:W6(V525_D-1) and C:W-1(V532_D-1) removing vertex C:W-1(V532_D-1) was concatenated into GAGCACTC:W6(V525_D-1) Want to move edge Edge(532->533,w:6.0)(C:W-1(V532_D-1)->T:W-1(V533_D-1)) to (GAGCACTC:W6(V525_D-1)->T:W-1(V533_D-1) adding edge: GAGCACTC:W6(V525_D-1) to T:W-1(V533_D-1) removing edge Edge(532->533,w:6.0)(C:W-1(V532_D-1)->T:W-1(V533_D-1)) removing edge Edge(525->532,w:6.0)(GAGCACTC:W6(V525_D-1)->C:W-1(V532_D-1)) Found potential edge: Edge(525->533,w:6.0) between GAGCACTC:W6(V525_D-1) and T:W-1(V533_D-1) removing vertex T:W-1(V533_D-1) was concatenated into GAGCACTCT:W6(V525_D-1) Want to move edge Edge(533->534,w:6.0)(T:W-1(V533_D-1)->G:W-1(V534_D-1)) to (GAGCACTCT:W6(V525_D-1)->G:W-1(V534_D-1) adding edge: GAGCACTCT:W6(V525_D-1) to G:W-1(V534_D-1) removing edge Edge(533->534,w:6.0)(T:W-1(V533_D-1)->G:W-1(V534_D-1)) removing edge Edge(525->533,w:6.0)(GAGCACTCT:W6(V525_D-1)->T:W-1(V533_D-1)) Found potential edge: Edge(525->534,w:6.0) between GAGCACTCT:W6(V525_D-1) and G:W-1(V534_D-1) removing vertex G:W-1(V534_D-1) was concatenated into GAGCACTCTG:W6(V525_D-1) Want to move edge Edge(534->535,w:6.0)(G:W-1(V534_D-1)->A:W-1(V535_D-1)) to (GAGCACTCTG:W6(V525_D-1)->A:W-1(V535_D-1) adding edge: GAGCACTCTG:W6(V525_D-1) to A:W-1(V535_D-1) removing edge Edge(534->535,w:6.0)(G:W-1(V534_D-1)->A:W-1(V535_D-1)) removing edge Edge(525->534,w:6.0)(GAGCACTCTG:W6(V525_D-1)->G:W-1(V534_D-1)) Found potential edge: Edge(525->535,w:6.0) between GAGCACTCTG:W6(V525_D-1) and A:W-1(V535_D-1) removing vertex A:W-1(V535_D-1) was concatenated into GAGCACTCTGA:W6(V525_D-1) Want to move edge Edge(535->536,w:6.0)(A:W-1(V535_D-1)->A:W-1(V536_D-1)) to (GAGCACTCTGA:W6(V525_D-1)->A:W-1(V536_D-1) adding edge: GAGCACTCTGA:W6(V525_D-1) to A:W-1(V536_D-1) removing edge Edge(535->536,w:6.0)(A:W-1(V535_D-1)->A:W-1(V536_D-1)) removing edge Edge(525->535,w:6.0)(GAGCACTCTGA:W6(V525_D-1)->A:W-1(V535_D-1)) Found potential edge: Edge(525->536,w:6.0) between GAGCACTCTGA:W6(V525_D-1) and A:W-1(V536_D-1) removing vertex A:W-1(V536_D-1) was concatenated into GAGCACTCTGAA:W6(V525_D-1) Want to move edge Edge(536->537,w:6.0)(A:W-1(V536_D-1)->C:W-1(V537_D-1)) to (GAGCACTCTGAA:W6(V525_D-1)->C:W-1(V537_D-1) adding edge: GAGCACTCTGAA:W6(V525_D-1) to C:W-1(V537_D-1) removing edge Edge(536->537,w:6.0)(A:W-1(V536_D-1)->C:W-1(V537_D-1)) removing edge Edge(525->536,w:6.0)(GAGCACTCTGAA:W6(V525_D-1)->A:W-1(V536_D-1)) Found potential edge: Edge(525->537,w:6.0) between GAGCACTCTGAA:W6(V525_D-1) and C:W-1(V537_D-1) removing vertex C:W-1(V537_D-1) was concatenated into GAGCACTCTGAAC:W6(V525_D-1) Want to move edge Edge(537->538,w:4.0)(C:W-1(V537_D-1)->C:W-1(V538_D-1)) to (GAGCACTCTGAAC:W6(V525_D-1)->C:W-1(V538_D-1) adding edge: GAGCACTCTGAAC:W6(V525_D-1) to C:W-1(V538_D-1) removing edge Edge(537->538,w:4.0)(C:W-1(V537_D-1)->C:W-1(V538_D-1)) removing edge Edge(525->537,w:6.0)(GAGCACTCTGAAC:W6(V525_D-1)->C:W-1(V537_D-1)) Found potential edge: Edge(525->538,w:4.0) between GAGCACTCTGAAC:W6(V525_D-1) and C:W-1(V538_D-1) removing vertex C:W-1(V538_D-1) was concatenated into GAGCACTCTGAACC:W6(V525_D-1) Want to move edge Edge(538->539,w:6.0)(C:W-1(V538_D-1)->C:W-1(V539_D-1)) to (GAGCACTCTGAACC:W6(V525_D-1)->C:W-1(V539_D-1) adding edge: GAGCACTCTGAACC:W6(V525_D-1) to C:W-1(V539_D-1) removing edge Edge(538->539,w:6.0)(C:W-1(V538_D-1)->C:W-1(V539_D-1)) removing edge Edge(525->538,w:4.0)(GAGCACTCTGAACC:W6(V525_D-1)->C:W-1(V538_D-1)) Found potential edge: Edge(525->539,w:6.0) between GAGCACTCTGAACC:W6(V525_D-1) and C:W-1(V539_D-1) removing vertex C:W-1(V539_D-1) was concatenated into GAGCACTCTGAACCC:W6(V525_D-1) Want to move edge Edge(539->540,w:6.0)(C:W-1(V539_D-1)->T:W-1(V540_D-1)) to (GAGCACTCTGAACCC:W6(V525_D-1)->T:W-1(V540_D-1) adding edge: GAGCACTCTGAACCC:W6(V525_D-1) to T:W-1(V540_D-1) removing edge Edge(539->540,w:6.0)(C:W-1(V539_D-1)->T:W-1(V540_D-1)) removing edge Edge(525->539,w:6.0)(GAGCACTCTGAACCC:W6(V525_D-1)->C:W-1(V539_D-1)) Found potential edge: Edge(525->540,w:6.0) between GAGCACTCTGAACCC:W6(V525_D-1) and T:W-1(V540_D-1) removing vertex T:W-1(V540_D-1) was concatenated into GAGCACTCTGAACCCT:W6(V525_D-1) Want to move edge Edge(540->541,w:6.0)(T:W-1(V540_D-1)->G:W-1(V541_D-1)) to (GAGCACTCTGAACCCT:W6(V525_D-1)->G:W-1(V541_D-1) adding edge: GAGCACTCTGAACCCT:W6(V525_D-1) to G:W-1(V541_D-1) removing edge Edge(540->541,w:6.0)(T:W-1(V540_D-1)->G:W-1(V541_D-1)) removing edge Edge(525->540,w:6.0)(GAGCACTCTGAACCCT:W6(V525_D-1)->T:W-1(V540_D-1)) Found potential edge: Edge(525->541,w:6.0) between GAGCACTCTGAACCCT:W6(V525_D-1) and G:W-1(V541_D-1) removing vertex G:W-1(V541_D-1) was concatenated into GAGCACTCTGAACCCTG:W6(V525_D-1) Want to move edge Edge(541->542,w:6.0)(G:W-1(V541_D-1)->T:W-1(V542_D-1)) to (GAGCACTCTGAACCCTG:W6(V525_D-1)->T:W-1(V542_D-1) adding edge: GAGCACTCTGAACCCTG:W6(V525_D-1) to T:W-1(V542_D-1) removing edge Edge(541->542,w:6.0)(G:W-1(V541_D-1)->T:W-1(V542_D-1)) removing edge Edge(525->541,w:6.0)(GAGCACTCTGAACCCTG:W6(V525_D-1)->G:W-1(V541_D-1)) Found potential edge: Edge(525->542,w:6.0) between GAGCACTCTGAACCCTG:W6(V525_D-1) and T:W-1(V542_D-1) removing vertex T:W-1(V542_D-1) was concatenated into GAGCACTCTGAACCCTGT:W6(V525_D-1) Want to move edge Edge(542->543,w:6.0)(T:W-1(V542_D-1)->G:W-1(V543_D-1)) to (GAGCACTCTGAACCCTGT:W6(V525_D-1)->G:W-1(V543_D-1) adding edge: GAGCACTCTGAACCCTGT:W6(V525_D-1) to G:W-1(V543_D-1) removing edge Edge(542->543,w:6.0)(T:W-1(V542_D-1)->G:W-1(V543_D-1)) removing edge Edge(525->542,w:6.0)(GAGCACTCTGAACCCTGT:W6(V525_D-1)->T:W-1(V542_D-1)) Found potential edge: Edge(525->543,w:6.0) between GAGCACTCTGAACCCTGT:W6(V525_D-1) and G:W-1(V543_D-1) removing vertex G:W-1(V543_D-1) was concatenated into GAGCACTCTGAACCCTGTG:W6(V525_D-1) Want to move edge Edge(543->544,w:6.0)(G:W-1(V543_D-1)->A:W-1(V544_D-1)) to (GAGCACTCTGAACCCTGTG:W6(V525_D-1)->A:W-1(V544_D-1) adding edge: GAGCACTCTGAACCCTGTG:W6(V525_D-1) to A:W-1(V544_D-1) removing edge Edge(543->544,w:6.0)(G:W-1(V543_D-1)->A:W-1(V544_D-1)) removing edge Edge(525->543,w:6.0)(GAGCACTCTGAACCCTGTG:W6(V525_D-1)->G:W-1(V543_D-1)) Found potential edge: Edge(525->544,w:6.0) between GAGCACTCTGAACCCTGTG:W6(V525_D-1) and A:W-1(V544_D-1) removing vertex A:W-1(V544_D-1) was concatenated into GAGCACTCTGAACCCTGTGA:W6(V525_D-1) Want to move edge Edge(544->545,w:6.0)(A:W-1(V544_D-1)->G:W-1(V545_D-1)) to (GAGCACTCTGAACCCTGTGA:W6(V525_D-1)->G:W-1(V545_D-1) adding edge: GAGCACTCTGAACCCTGTGA:W6(V525_D-1) to G:W-1(V545_D-1) removing edge Edge(544->545,w:6.0)(A:W-1(V544_D-1)->G:W-1(V545_D-1)) removing edge Edge(525->544,w:6.0)(GAGCACTCTGAACCCTGTGA:W6(V525_D-1)->A:W-1(V544_D-1)) Found potential edge: Edge(525->545,w:6.0) between GAGCACTCTGAACCCTGTGA:W6(V525_D-1) and G:W-1(V545_D-1) removing vertex G:W-1(V545_D-1) was concatenated into GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) Want to move edge Edge(545->546,w:6.0)(G:W-1(V545_D-1)->G:W-1(V546_D-1)) to (GAGCACTCTGAACCCTGTGAG:W6(V525_D-1)->G:W-1(V546_D-1) adding edge: GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) to G:W-1(V546_D-1) removing edge Edge(545->546,w:6.0)(G:W-1(V545_D-1)->G:W-1(V546_D-1)) removing edge Edge(525->545,w:6.0)(GAGCACTCTGAACCCTGTGAG:W6(V525_D-1)->G:W-1(V545_D-1)) Found potential edge: Edge(525->546,w:6.0) between GAGCACTCTGAACCCTGTGAG:W6(V525_D-1) and G:W-1(V546_D-1) removing vertex G:W-1(V546_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) Want to move edge Edge(546->547,w:6.0)(G:W-1(V546_D-1)->C:W-1(V547_D-1)) to (GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1)->C:W-1(V547_D-1) adding edge: GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) to C:W-1(V547_D-1) removing edge Edge(546->547,w:6.0)(G:W-1(V546_D-1)->C:W-1(V547_D-1)) removing edge Edge(525->546,w:6.0)(GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1)->G:W-1(V546_D-1)) Found potential edge: Edge(525->547,w:6.0) between GAGCACTCTGAACCCTGTGAGG:W6(V525_D-1) and C:W-1(V547_D-1) removing vertex C:W-1(V547_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) Want to move edge Edge(547->548,w:6.0)(C:W-1(V547_D-1)->A:W-1(V548_D-1)) to (GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1)->A:W-1(V548_D-1) adding edge: GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) to A:W-1(V548_D-1) removing edge Edge(547->548,w:6.0)(C:W-1(V547_D-1)->A:W-1(V548_D-1)) removing edge Edge(525->547,w:6.0)(GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1)->C:W-1(V547_D-1)) Found potential edge: Edge(525->548,w:6.0) between GAGCACTCTGAACCCTGTGAGGC:W6(V525_D-1) and A:W-1(V548_D-1) removing vertex A:W-1(V548_D-1) was concatenated into GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) Want to move edge Edge(548->549,w:6.0)(A:W-1(V548_D-1)->A:W-1(V549_D-1)) to (GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1)->A:W-1(V549_D-1) adding edge: GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) to A:W-1(V549_D-1) removing edge Edge(548->549,w:6.0)(A:W-1(V548_D-1)->A:W-1(V549_D-1)) removing edge Edge(525->548,w:6.0)(GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1)->A:W-1(V548_D-1)) Found potential edge: Edge(549->550,w:8.0) between A:W-1(V549_D-1) and G:W-1(V550_D-1) removing vertex G:W-1(V550_D-1) was concatenated into AG:W8(V549_D-1) Want to move edge Edge(550->551,w:8.0)(G:W-1(V550_D-1)->T:W-1(V551_D-1)) to (AG:W8(V549_D-1)->T:W-1(V551_D-1) adding edge: AG:W8(V549_D-1) to T:W-1(V551_D-1) removing edge Edge(550->551,w:8.0)(G:W-1(V550_D-1)->T:W-1(V551_D-1)) removing edge Edge(549->550,w:8.0)(AG:W8(V549_D-1)->G:W-1(V550_D-1)) Found potential edge: Edge(549->551,w:8.0) between AG:W8(V549_D-1) and T:W-1(V551_D-1) removing vertex T:W-1(V551_D-1) was concatenated into AGT:W8(V549_D-1) Want to move edge Edge(551->552,w:8.0)(T:W-1(V551_D-1)->C:W-1(V552_D-1)) to (AGT:W8(V549_D-1)->C:W-1(V552_D-1) adding edge: AGT:W8(V549_D-1) to C:W-1(V552_D-1) removing edge Edge(551->552,w:8.0)(T:W-1(V551_D-1)->C:W-1(V552_D-1)) removing edge Edge(549->551,w:8.0)(AGT:W8(V549_D-1)->T:W-1(V551_D-1)) Found potential edge: Edge(549->552,w:8.0) between AGT:W8(V549_D-1) and C:W-1(V552_D-1) removing vertex C:W-1(V552_D-1) was concatenated into AGTC:W8(V549_D-1) Want to move edge Edge(552->553,w:8.0)(C:W-1(V552_D-1)->C:W-1(V553_D-1)) to (AGTC:W8(V549_D-1)->C:W-1(V553_D-1) adding edge: AGTC:W8(V549_D-1) to C:W-1(V553_D-1) removing edge Edge(552->553,w:8.0)(C:W-1(V552_D-1)->C:W-1(V553_D-1)) removing edge Edge(549->552,w:8.0)(AGTC:W8(V549_D-1)->C:W-1(V552_D-1)) Found potential edge: Edge(549->553,w:8.0) between AGTC:W8(V549_D-1) and C:W-1(V553_D-1) removing vertex C:W-1(V553_D-1) was concatenated into AGTCC:W8(V549_D-1) Want to move edge Edge(553->554,w:8.0)(C:W-1(V553_D-1)->A:W-1(V554_D-1)) to (AGTCC:W8(V549_D-1)->A:W-1(V554_D-1) adding edge: AGTCC:W8(V549_D-1) to A:W-1(V554_D-1) removing edge Edge(553->554,w:8.0)(C:W-1(V553_D-1)->A:W-1(V554_D-1)) removing edge Edge(549->553,w:8.0)(AGTCC:W8(V549_D-1)->C:W-1(V553_D-1)) Found potential edge: Edge(549->554,w:8.0) between AGTCC:W8(V549_D-1) and A:W-1(V554_D-1) removing vertex A:W-1(V554_D-1) was concatenated into AGTCCA:W8(V549_D-1) Want to move edge Edge(554->555,w:6.0)(A:W-1(V554_D-1)->C:W-1(V555_D-1)) to (AGTCCA:W8(V549_D-1)->C:W-1(V555_D-1) adding edge: AGTCCA:W8(V549_D-1) to C:W-1(V555_D-1) removing edge Edge(554->555,w:6.0)(A:W-1(V554_D-1)->C:W-1(V555_D-1)) removing edge Edge(549->554,w:8.0)(AGTCCA:W8(V549_D-1)->A:W-1(V554_D-1)) Found potential edge: Edge(549->555,w:6.0) between AGTCCA:W8(V549_D-1) and C:W-1(V555_D-1) removing vertex C:W-1(V555_D-1) was concatenated into AGTCCAC:W8(V549_D-1) Want to move edge Edge(555->556,w:6.0)(C:W-1(V555_D-1)->C:W-1(V556_D-1)) to (AGTCCAC:W8(V549_D-1)->C:W-1(V556_D-1) adding edge: AGTCCAC:W8(V549_D-1) to C:W-1(V556_D-1) removing edge Edge(555->556,w:6.0)(C:W-1(V555_D-1)->C:W-1(V556_D-1)) removing edge Edge(549->555,w:6.0)(AGTCCAC:W8(V549_D-1)->C:W-1(V555_D-1)) Found potential edge: Edge(549->556,w:6.0) between AGTCCAC:W8(V549_D-1) and C:W-1(V556_D-1) removing vertex C:W-1(V556_D-1) was concatenated into AGTCCACC:W7(V549_D-1) Want to move edge Edge(556->557,w:4.0)(C:W-1(V556_D-1)->A:W-1(V557_D-1)) to (AGTCCACC:W7(V549_D-1)->A:W-1(V557_D-1) adding edge: AGTCCACC:W7(V549_D-1) to A:W-1(V557_D-1) removing edge Edge(556->557,w:4.0)(C:W-1(V556_D-1)->A:W-1(V557_D-1)) removing edge Edge(549->556,w:6.0)(AGTCCACC:W7(V549_D-1)->C:W-1(V556_D-1)) Found potential edge: Edge(549->557,w:4.0) between AGTCCACC:W7(V549_D-1) and A:W-1(V557_D-1) removing vertex A:W-1(V557_D-1) was concatenated into AGTCCACCA:W7(V549_D-1) Want to move edge Edge(557->558,w:4.0)(A:W-1(V557_D-1)->C:W-1(V558_D-1)) to (AGTCCACCA:W7(V549_D-1)->C:W-1(V558_D-1) adding edge: AGTCCACCA:W7(V549_D-1) to C:W-1(V558_D-1) removing edge Edge(557->558,w:4.0)(A:W-1(V557_D-1)->C:W-1(V558_D-1)) removing edge Edge(549->557,w:4.0)(AGTCCACCA:W7(V549_D-1)->A:W-1(V557_D-1)) Found potential edge: Edge(549->558,w:4.0) between AGTCCACCA:W7(V549_D-1) and C:W-1(V558_D-1) removing vertex C:W-1(V558_D-1) was concatenated into AGTCCACCAC:W7(V549_D-1) Want to move edge Edge(558->559,w:4.0)(C:W-1(V558_D-1)->C:W-1(V559_D-1)) to (AGTCCACCAC:W7(V549_D-1)->C:W-1(V559_D-1) adding edge: AGTCCACCAC:W7(V549_D-1) to C:W-1(V559_D-1) removing edge Edge(558->559,w:4.0)(C:W-1(V558_D-1)->C:W-1(V559_D-1)) removing edge Edge(549->558,w:4.0)(AGTCCACCAC:W7(V549_D-1)->C:W-1(V558_D-1)) Found potential edge: Edge(549->559,w:4.0) between AGTCCACCAC:W7(V549_D-1) and C:W-1(V559_D-1) removing vertex C:W-1(V559_D-1) was concatenated into AGTCCACCACC:W6(V549_D-1) Want to move edge Edge(559->560,w:2.0)(C:W-1(V559_D-1)->A:W-1(V560_D-1)) to (AGTCCACCACC:W6(V549_D-1)->A:W-1(V560_D-1) adding edge: AGTCCACCACC:W6(V549_D-1) to A:W-1(V560_D-1) removing edge Edge(559->560,w:2.0)(C:W-1(V559_D-1)->A:W-1(V560_D-1)) removing edge Edge(549->559,w:4.0)(AGTCCACCACC:W6(V549_D-1)->C:W-1(V559_D-1)) Found potential edge: Edge(549->560,w:2.0) between AGTCCACCACC:W6(V549_D-1) and A:W-1(V560_D-1) removing vertex A:W-1(V560_D-1) was concatenated into AGTCCACCACCA:W6(V549_D-1) Want to move edge Edge(560->561,w:2.0)(A:W-1(V560_D-1)->G:W-1(V561_D-1)) to (AGTCCACCACCA:W6(V549_D-1)->G:W-1(V561_D-1) adding edge: AGTCCACCACCA:W6(V549_D-1) to G:W-1(V561_D-1) removing edge Edge(560->561,w:2.0)(A:W-1(V560_D-1)->G:W-1(V561_D-1)) removing edge Edge(549->560,w:2.0)(AGTCCACCACCA:W6(V549_D-1)->A:W-1(V560_D-1)) Found potential edge: Edge(549->561,w:2.0) between AGTCCACCACCA:W6(V549_D-1) and G:W-1(V561_D-1) removing vertex G:W-1(V561_D-1) was concatenated into AGTCCACCACCAG:W6(V549_D-1) Want to move edge Edge(561->562,w:2.0)(G:W-1(V561_D-1)->C:W-1(V562_D-1)) to (AGTCCACCACCAG:W6(V549_D-1)->C:W-1(V562_D-1) adding edge: AGTCCACCACCAG:W6(V549_D-1) to C:W-1(V562_D-1) removing edge Edge(561->562,w:2.0)(G:W-1(V561_D-1)->C:W-1(V562_D-1)) removing edge Edge(549->561,w:2.0)(AGTCCACCACCAG:W6(V549_D-1)->G:W-1(V561_D-1)) Found potential edge: Edge(549->562,w:2.0) between AGTCCACCACCAG:W6(V549_D-1) and C:W-1(V562_D-1) removing vertex C:W-1(V562_D-1) was concatenated into AGTCCACCACCAGC:W5(V549_D-1) Want to move edge Edge(562->563,w:2.0)(C:W-1(V562_D-1)->G:W-1(V563_D-1)) to (AGTCCACCACCAGC:W5(V549_D-1)->G:W-1(V563_D-1) adding edge: AGTCCACCACCAGC:W5(V549_D-1) to G:W-1(V563_D-1) removing edge Edge(562->563,w:2.0)(C:W-1(V562_D-1)->G:W-1(V563_D-1)) removing edge Edge(549->562,w:2.0)(AGTCCACCACCAGC:W5(V549_D-1)->C:W-1(V562_D-1)) Found potential edge: Edge(549->563,w:2.0) between AGTCCACCACCAGC:W5(V549_D-1) and G:W-1(V563_D-1) removing vertex G:W-1(V563_D-1) was concatenated into AGTCCACCACCAGCG:W5(V549_D-1) Want to move edge Edge(563->564,w:2.0)(G:W-1(V563_D-1)->T:W-1(V564_D-1)) to (AGTCCACCACCAGCG:W5(V549_D-1)->T:W-1(V564_D-1) adding edge: AGTCCACCACCAGCG:W5(V549_D-1) to T:W-1(V564_D-1) removing edge Edge(563->564,w:2.0)(G:W-1(V563_D-1)->T:W-1(V564_D-1)) removing edge Edge(549->563,w:2.0)(AGTCCACCACCAGCG:W5(V549_D-1)->G:W-1(V563_D-1)) Found potential edge: Edge(549->564,w:2.0) between AGTCCACCACCAGCG:W5(V549_D-1) and T:W-1(V564_D-1) removing vertex T:W-1(V564_D-1) was concatenated into AGTCCACCACCAGCGT:W5(V549_D-1) Want to move edge Edge(564->565,w:2.0)(T:W-1(V564_D-1)->A:W-1(V565_D-1)) to (AGTCCACCACCAGCGT:W5(V549_D-1)->A:W-1(V565_D-1) adding edge: AGTCCACCACCAGCGT:W5(V549_D-1) to A:W-1(V565_D-1) removing edge Edge(564->565,w:2.0)(T:W-1(V564_D-1)->A:W-1(V565_D-1)) removing edge Edge(549->564,w:2.0)(AGTCCACCACCAGCGT:W5(V549_D-1)->T:W-1(V564_D-1)) Found potential edge: Edge(549->565,w:2.0) between AGTCCACCACCAGCGT:W5(V549_D-1) and A:W-1(V565_D-1) removing vertex A:W-1(V565_D-1) was concatenated into AGTCCACCACCAGCGTA:W5(V549_D-1) Want to move edge Edge(565->566,w:2.0)(A:W-1(V565_D-1)->T:W-1(V566_D-1)) to (AGTCCACCACCAGCGTA:W5(V549_D-1)->T:W-1(V566_D-1) adding edge: AGTCCACCACCAGCGTA:W5(V549_D-1) to T:W-1(V566_D-1) removing edge Edge(565->566,w:2.0)(A:W-1(V565_D-1)->T:W-1(V566_D-1)) removing edge Edge(549->565,w:2.0)(AGTCCACCACCAGCGTA:W5(V549_D-1)->A:W-1(V565_D-1)) Found potential edge: Edge(549->566,w:2.0) between AGTCCACCACCAGCGTA:W5(V549_D-1) and T:W-1(V566_D-1) removing vertex T:W-1(V566_D-1) was concatenated into AGTCCACCACCAGCGTAT:W5(V549_D-1) Want to move edge Edge(566->567,w:2.0)(T:W-1(V566_D-1)->C:W-1(V567_D-1)) to (AGTCCACCACCAGCGTAT:W5(V549_D-1)->C:W-1(V567_D-1) adding edge: AGTCCACCACCAGCGTAT:W5(V549_D-1) to C:W-1(V567_D-1) removing edge Edge(566->567,w:2.0)(T:W-1(V566_D-1)->C:W-1(V567_D-1)) removing edge Edge(549->566,w:2.0)(AGTCCACCACCAGCGTAT:W5(V549_D-1)->T:W-1(V566_D-1)) Found potential edge: Edge(549->567,w:2.0) between AGTCCACCACCAGCGTAT:W5(V549_D-1) and C:W-1(V567_D-1) removing vertex C:W-1(V567_D-1) was concatenated into AGTCCACCACCAGCGTATC:W4(V549_D-1) Want to move edge Edge(567->568,w:4.0)(C:W-1(V567_D-1)->T:W-1(V568_D-1)) to (AGTCCACCACCAGCGTATC:W4(V549_D-1)->T:W-1(V568_D-1) adding edge: AGTCCACCACCAGCGTATC:W4(V549_D-1) to T:W-1(V568_D-1) removing edge Edge(567->568,w:4.0)(C:W-1(V567_D-1)->T:W-1(V568_D-1)) removing edge Edge(549->567,w:2.0)(AGTCCACCACCAGCGTATC:W4(V549_D-1)->C:W-1(V567_D-1)) Found potential edge: Edge(549->568,w:4.0) between AGTCCACCACCAGCGTATC:W4(V549_D-1) and T:W-1(V568_D-1) removing vertex T:W-1(V568_D-1) was concatenated into AGTCCACCACCAGCGTATCT:W4(V549_D-1) Want to move edge Edge(568->569,w:4.0)(T:W-1(V568_D-1)->A:W-1(V569_D-1)) to (AGTCCACCACCAGCGTATCT:W4(V549_D-1)->A:W-1(V569_D-1) adding edge: AGTCCACCACCAGCGTATCT:W4(V549_D-1) to A:W-1(V569_D-1) removing edge Edge(568->569,w:4.0)(T:W-1(V568_D-1)->A:W-1(V569_D-1)) removing edge Edge(549->568,w:4.0)(AGTCCACCACCAGCGTATCT:W4(V549_D-1)->T:W-1(V568_D-1)) Found potential edge: Edge(549->569,w:4.0) between AGTCCACCACCAGCGTATCT:W4(V549_D-1) and A:W-1(V569_D-1) removing vertex A:W-1(V569_D-1) was concatenated into AGTCCACCACCAGCGTATCTA:W4(V549_D-1) Want to move edge Edge(569->570,w:4.0)(A:W-1(V569_D-1)->G:W-1(V570_D-1)) to (AGTCCACCACCAGCGTATCTA:W4(V549_D-1)->G:W-1(V570_D-1) adding edge: AGTCCACCACCAGCGTATCTA:W4(V549_D-1) to G:W-1(V570_D-1) removing edge Edge(569->570,w:4.0)(A:W-1(V569_D-1)->G:W-1(V570_D-1)) removing edge Edge(549->569,w:4.0)(AGTCCACCACCAGCGTATCTA:W4(V549_D-1)->A:W-1(V569_D-1)) Found potential edge: Edge(549->570,w:4.0) between AGTCCACCACCAGCGTATCTA:W4(V549_D-1) and G:W-1(V570_D-1) removing vertex G:W-1(V570_D-1) was concatenated into AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) Want to move edge Edge(570->571,w:4.0)(G:W-1(V570_D-1)->A:W-1(V571_D-1)) to (AGTCCACCACCAGCGTATCTAG:W4(V549_D-1)->A:W-1(V571_D-1) adding edge: AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) to A:W-1(V571_D-1) removing edge Edge(570->571,w:4.0)(G:W-1(V570_D-1)->A:W-1(V571_D-1)) removing edge Edge(549->570,w:4.0)(AGTCCACCACCAGCGTATCTAG:W4(V549_D-1)->G:W-1(V570_D-1)) Found potential edge: Edge(549->571,w:4.0) between AGTCCACCACCAGCGTATCTAG:W4(V549_D-1) and A:W-1(V571_D-1) removing vertex A:W-1(V571_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) Want to move edge Edge(571->572,w:4.0)(A:W-1(V571_D-1)->C:W-1(V572_D-1)) to (AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1)->C:W-1(V572_D-1) adding edge: AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) to C:W-1(V572_D-1) removing edge Edge(571->572,w:4.0)(A:W-1(V571_D-1)->C:W-1(V572_D-1)) removing edge Edge(549->571,w:4.0)(AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1)->A:W-1(V571_D-1)) Found potential edge: Edge(549->572,w:4.0) between AGTCCACCACCAGCGTATCTAGA:W4(V549_D-1) and C:W-1(V572_D-1) removing vertex C:W-1(V572_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) Want to move edge Edge(572->573,w:4.0)(C:W-1(V572_D-1)->C:W-1(V573_D-1)) to (AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1)->C:W-1(V573_D-1) adding edge: AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) to C:W-1(V573_D-1) removing edge Edge(572->573,w:4.0)(C:W-1(V572_D-1)->C:W-1(V573_D-1)) removing edge Edge(549->572,w:4.0)(AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1)->C:W-1(V572_D-1)) Found potential edge: Edge(549->573,w:4.0) between AGTCCACCACCAGCGTATCTAGAC:W4(V549_D-1) and C:W-1(V573_D-1) removing vertex C:W-1(V573_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) Want to move edge Edge(573->574,w:4.0)(C:W-1(V573_D-1)->C:W-1(V574_D-1)) to (AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1)->C:W-1(V574_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) to C:W-1(V574_D-1) removing edge Edge(573->574,w:4.0)(C:W-1(V573_D-1)->C:W-1(V574_D-1)) removing edge Edge(549->573,w:4.0)(AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1)->C:W-1(V573_D-1)) Found potential edge: Edge(549->574,w:4.0) between AGTCCACCACCAGCGTATCTAGACC:W4(V549_D-1) and C:W-1(V574_D-1) removing vertex C:W-1(V574_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) Want to move edge Edge(574->575,w:4.0)(C:W-1(V574_D-1)->A:W-1(V575_D-1)) to (AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1)->A:W-1(V575_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) to A:W-1(V575_D-1) removing edge Edge(574->575,w:4.0)(C:W-1(V574_D-1)->A:W-1(V575_D-1)) removing edge Edge(549->574,w:4.0)(AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1)->C:W-1(V574_D-1)) Found potential edge: Edge(549->575,w:4.0) between AGTCCACCACCAGCGTATCTAGACCC:W4(V549_D-1) and A:W-1(V575_D-1) removing vertex A:W-1(V575_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) Want to move edge Edge(575->576,w:4.0)(A:W-1(V575_D-1)->G:W-1(V576_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1)->G:W-1(V576_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) to G:W-1(V576_D-1) removing edge Edge(575->576,w:4.0)(A:W-1(V575_D-1)->G:W-1(V576_D-1)) removing edge Edge(549->575,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1)->A:W-1(V575_D-1)) Found potential edge: Edge(549->576,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCA:W4(V549_D-1) and G:W-1(V576_D-1) removing vertex G:W-1(V576_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) Want to move edge Edge(576->577,w:4.0)(G:W-1(V576_D-1)->G:W-1(V577_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1)->G:W-1(V577_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) to G:W-1(V577_D-1) removing edge Edge(576->577,w:4.0)(G:W-1(V576_D-1)->G:W-1(V577_D-1)) removing edge Edge(549->576,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1)->G:W-1(V576_D-1)) Found potential edge: Edge(549->577,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAG:W4(V549_D-1) and G:W-1(V577_D-1) removing vertex G:W-1(V577_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) Want to move edge Edge(577->578,w:4.0)(G:W-1(V577_D-1)->C:W-1(V578_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1)->C:W-1(V578_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) to C:W-1(V578_D-1) removing edge Edge(577->578,w:4.0)(G:W-1(V577_D-1)->C:W-1(V578_D-1)) removing edge Edge(549->577,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1)->G:W-1(V577_D-1)) Found potential edge: Edge(549->578,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAGG:W4(V549_D-1) and C:W-1(V578_D-1) removing vertex C:W-1(V578_D-1) was concatenated into AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) Want to move edge Edge(578->579,w:4.0)(C:W-1(V578_D-1)->C:W-1(V579_D-1)) to (AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1)->C:W-1(V579_D-1) adding edge: AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) to C:W-1(V579_D-1) removing edge Edge(578->579,w:4.0)(C:W-1(V578_D-1)->C:W-1(V579_D-1)) removing edge Edge(549->578,w:4.0)(AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1)->C:W-1(V578_D-1)) Found potential edge: Edge(549->579,w:4.0) between AGTCCACCACCAGCGTATCTAGACCCAGGC:W4(V549_D-1) and C:W-1(V579_D-1) removing vertex C:W-1(V579_D-1) was concatenated into AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) Want to move edge Edge(579->580,w:4.0)(C:W-1(V579_D-1)->A:W-1(V580_D-1)) to (AGTCCACCAC...GACCCAGGCC:W4(V549_D-1)->A:W-1(V580_D-1) adding edge: AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) to A:W-1(V580_D-1) removing edge Edge(579->580,w:4.0)(C:W-1(V579_D-1)->A:W-1(V580_D-1)) removing edge Edge(549->579,w:4.0)(AGTCCACCAC...GACCCAGGCC:W4(V549_D-1)->C:W-1(V579_D-1)) Found potential edge: Edge(549->580,w:4.0) between AGTCCACCAC...GACCCAGGCC:W4(V549_D-1) and A:W-1(V580_D-1) removing vertex A:W-1(V580_D-1) was concatenated into AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) Want to move edge Edge(580->581,w:4.0)(A:W-1(V580_D-1)->T:W-1(V581_D-1)) to (AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1)->T:W-1(V581_D-1) adding edge: AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) to T:W-1(V581_D-1) removing edge Edge(580->581,w:4.0)(A:W-1(V580_D-1)->T:W-1(V581_D-1)) removing edge Edge(549->580,w:4.0)(AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1)->A:W-1(V580_D-1)) Found potential edge: Edge(549->581,w:4.0) between AGTCCACCAC...ACCCAGGCCA:W4(V549_D-1) and T:W-1(V581_D-1) removing vertex T:W-1(V581_D-1) was concatenated into AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) Want to move edge Edge(581->582,w:4.0)(T:W-1(V581_D-1)->C:W-1(V582_D-1)) to (AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1)->C:W-1(V582_D-1) adding edge: AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) to C:W-1(V582_D-1) removing edge Edge(581->582,w:4.0)(T:W-1(V581_D-1)->C:W-1(V582_D-1)) removing edge Edge(549->581,w:4.0)(AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1)->T:W-1(V581_D-1)) Found potential edge: Edge(549->582,w:4.0) between AGTCCACCAC...CCCAGGCCAT:W4(V549_D-1) and C:W-1(V582_D-1) removing vertex C:W-1(V582_D-1) was concatenated into AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) Want to move edge Edge(582->583,w:4.0)(C:W-1(V582_D-1)->T:W-1(V583_D-1)) to (AGTCCACCAC...CCAGGCCATC:W4(V549_D-1)->T:W-1(V583_D-1) adding edge: AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) to T:W-1(V583_D-1) removing edge Edge(582->583,w:4.0)(C:W-1(V582_D-1)->T:W-1(V583_D-1)) removing edge Edge(549->582,w:4.0)(AGTCCACCAC...CCAGGCCATC:W4(V549_D-1)->C:W-1(V582_D-1)) Found potential edge: Edge(549->583,w:4.0) between AGTCCACCAC...CCAGGCCATC:W4(V549_D-1) and T:W-1(V583_D-1) removing vertex T:W-1(V583_D-1) was concatenated into AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) Want to move edge Edge(583->584,w:4.0)(T:W-1(V583_D-1)->A:W-1(V584_D-1)) to (AGTCCACCAC...CAGGCCATCT:W4(V549_D-1)->A:W-1(V584_D-1) adding edge: AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) to A:W-1(V584_D-1) removing edge Edge(583->584,w:4.0)(T:W-1(V583_D-1)->A:W-1(V584_D-1)) removing edge Edge(549->583,w:4.0)(AGTCCACCAC...CAGGCCATCT:W4(V549_D-1)->T:W-1(V583_D-1)) Found potential edge: Edge(549->584,w:4.0) between AGTCCACCAC...CAGGCCATCT:W4(V549_D-1) and A:W-1(V584_D-1) removing vertex A:W-1(V584_D-1) was concatenated into AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) Want to move edge Edge(584->585,w:4.0)(A:W-1(V584_D-1)->A:W-1(V585_D-1)) to (AGTCCACCAC...AGGCCATCTA:W4(V549_D-1)->A:W-1(V585_D-1) adding edge: AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) to A:W-1(V585_D-1) removing edge Edge(584->585,w:4.0)(A:W-1(V584_D-1)->A:W-1(V585_D-1)) removing edge Edge(549->584,w:4.0)(AGTCCACCAC...AGGCCATCTA:W4(V549_D-1)->A:W-1(V584_D-1)) Found potential edge: Edge(549->585,w:4.0) between AGTCCACCAC...AGGCCATCTA:W4(V549_D-1) and A:W-1(V585_D-1) removing vertex A:W-1(V585_D-1) was concatenated into AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) Want to move edge Edge(585->586,w:4.0)(A:W-1(V585_D-1)->T:W-1(V586_D-1)) to (AGTCCACCAC...GGCCATCTAA:W4(V549_D-1)->T:W-1(V586_D-1) adding edge: AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) to T:W-1(V586_D-1) removing edge Edge(585->586,w:4.0)(A:W-1(V585_D-1)->T:W-1(V586_D-1)) removing edge Edge(549->585,w:4.0)(AGTCCACCAC...GGCCATCTAA:W4(V549_D-1)->A:W-1(V585_D-1)) Found potential edge: Edge(549->586,w:4.0) between AGTCCACCAC...GGCCATCTAA:W4(V549_D-1) and T:W-1(V586_D-1) removing vertex T:W-1(V586_D-1) was concatenated into AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) Want to move edge Edge(586->587,w:4.0)(T:W-1(V586_D-1)->A:W-1(V587_D-1)) to (AGTCCACCAC...GCCATCTAAT:W4(V549_D-1)->A:W-1(V587_D-1) adding edge: AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) to A:W-1(V587_D-1) removing edge Edge(586->587,w:4.0)(T:W-1(V586_D-1)->A:W-1(V587_D-1)) removing edge Edge(549->586,w:4.0)(AGTCCACCAC...GCCATCTAAT:W4(V549_D-1)->T:W-1(V586_D-1)) Found potential edge: Edge(549->587,w:4.0) between AGTCCACCAC...GCCATCTAAT:W4(V549_D-1) and A:W-1(V587_D-1) removing vertex A:W-1(V587_D-1) was concatenated into AGTCCACCAC...CCATCTAATA:W4(V549_D-1) Want to move edge Edge(587->588,w:4.0)(A:W-1(V587_D-1)->A:W-1(V588_D-1)) to (AGTCCACCAC...CCATCTAATA:W4(V549_D-1)->A:W-1(V588_D-1) adding edge: AGTCCACCAC...CCATCTAATA:W4(V549_D-1) to A:W-1(V588_D-1) removing edge Edge(587->588,w:4.0)(A:W-1(V587_D-1)->A:W-1(V588_D-1)) removing edge Edge(549->587,w:4.0)(AGTCCACCAC...CCATCTAATA:W4(V549_D-1)->A:W-1(V587_D-1)) Found potential edge: Edge(549->588,w:4.0) between AGTCCACCAC...CCATCTAATA:W4(V549_D-1) and A:W-1(V588_D-1) removing vertex A:W-1(V588_D-1) was concatenated into AGTCCACCAC...CATCTAATAA:W4(V549_D-1) Want to move edge Edge(588->589,w:4.0)(A:W-1(V588_D-1)->A:W-1(V589_D-1)) to (AGTCCACCAC...CATCTAATAA:W4(V549_D-1)->A:W-1(V589_D-1) adding edge: AGTCCACCAC...CATCTAATAA:W4(V549_D-1) to A:W-1(V589_D-1) removing edge Edge(588->589,w:4.0)(A:W-1(V588_D-1)->A:W-1(V589_D-1)) removing edge Edge(549->588,w:4.0)(AGTCCACCAC...CATCTAATAA:W4(V549_D-1)->A:W-1(V588_D-1)) Found potential edge: Edge(549->589,w:4.0) between AGTCCACCAC...CATCTAATAA:W4(V549_D-1) and A:W-1(V589_D-1) removing vertex A:W-1(V589_D-1) was concatenated into AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) Want to move edge Edge(589->590,w:4.0)(A:W-1(V589_D-1)->G:W-1(V590_D-1)) to (AGTCCACCAC...ATCTAATAAA:W4(V549_D-1)->G:W-1(V590_D-1) adding edge: AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) to G:W-1(V590_D-1) removing edge Edge(589->590,w:4.0)(A:W-1(V589_D-1)->G:W-1(V590_D-1)) removing edge Edge(549->589,w:4.0)(AGTCCACCAC...ATCTAATAAA:W4(V549_D-1)->A:W-1(V589_D-1)) Found potential edge: Edge(549->590,w:4.0) between AGTCCACCAC...ATCTAATAAA:W4(V549_D-1) and G:W-1(V590_D-1) removing vertex G:W-1(V590_D-1) was concatenated into AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) Want to move edge Edge(590->591,w:2.0)(G:W-1(V590_D-1)->G:W-1(V591_D-1)) to (AGTCCACCAC...TCTAATAAAG:W4(V549_D-1)->G:W-1(V591_D-1) adding edge: AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) to G:W-1(V591_D-1) removing edge Edge(590->591,w:2.0)(G:W-1(V590_D-1)->G:W-1(V591_D-1)) removing edge Edge(549->590,w:4.0)(AGTCCACCAC...TCTAATAAAG:W4(V549_D-1)->G:W-1(V590_D-1)) Found potential edge: Edge(549->591,w:2.0) between AGTCCACCAC...TCTAATAAAG:W4(V549_D-1) and G:W-1(V591_D-1) removing vertex G:W-1(V591_D-1) was concatenated into AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) Want to move edge Edge(591->592,w:2.0)(G:W-1(V591_D-1)->A:W-1(V592_D-1)) to (AGTCCACCAC...CTAATAAAGG:W4(V549_D-1)->A:W-1(V592_D-1) adding edge: AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) to A:W-1(V592_D-1) removing edge Edge(591->592,w:2.0)(G:W-1(V591_D-1)->A:W-1(V592_D-1)) removing edge Edge(549->591,w:2.0)(AGTCCACCAC...CTAATAAAGG:W4(V549_D-1)->G:W-1(V591_D-1)) Found potential edge: Edge(549->592,w:2.0) between AGTCCACCAC...CTAATAAAGG:W4(V549_D-1) and A:W-1(V592_D-1) removing vertex A:W-1(V592_D-1) was concatenated into AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) Want to move edge Edge(592->593,w:2.0)(A:W-1(V592_D-1)->A:W-1(V593_D-1)) to (AGTCCACCAC...TAATAAAGGA:W4(V549_D-1)->A:W-1(V593_D-1) adding edge: AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) to A:W-1(V593_D-1) removing edge Edge(592->593,w:2.0)(A:W-1(V592_D-1)->A:W-1(V593_D-1)) removing edge Edge(549->592,w:2.0)(AGTCCACCAC...TAATAAAGGA:W4(V549_D-1)->A:W-1(V592_D-1)) Found potential edge: Edge(549->593,w:2.0) between AGTCCACCAC...TAATAAAGGA:W4(V549_D-1) and A:W-1(V593_D-1) removing vertex A:W-1(V593_D-1) was concatenated into AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) Want to move edge Edge(593->594,w:2.0)(A:W-1(V593_D-1)->A:W-1(V594_D-1)) to (AGTCCACCAC...AATAAAGGAA:W4(V549_D-1)->A:W-1(V594_D-1) adding edge: AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) to A:W-1(V594_D-1) removing edge Edge(593->594,w:2.0)(A:W-1(V593_D-1)->A:W-1(V594_D-1)) removing edge Edge(549->593,w:2.0)(AGTCCACCAC...AATAAAGGAA:W4(V549_D-1)->A:W-1(V593_D-1)) Found potential edge: Edge(549->594,w:2.0) between AGTCCACCAC...AATAAAGGAA:W4(V549_D-1) and A:W-1(V594_D-1) removing vertex A:W-1(V594_D-1) was concatenated into AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) Want to move edge Edge(594->595,w:2.0)(A:W-1(V594_D-1)->A:W-1(V595_D-1)) to (AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1)->A:W-1(V595_D-1) adding edge: AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) to A:W-1(V595_D-1) removing edge Edge(594->595,w:2.0)(A:W-1(V594_D-1)->A:W-1(V595_D-1)) removing edge Edge(549->594,w:2.0)(AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1)->A:W-1(V594_D-1)) Found potential edge: Edge(549->595,w:2.0) between AGTCCACCAC...ATAAAGGAAA:W4(V549_D-1) and A:W-1(V595_D-1) removing vertex A:W-1(V595_D-1) was concatenated into AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) Want to move edge Edge(595->596,w:2.0)(A:W-1(V595_D-1)->C:W-1(V596_D-1)) to (AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1)->C:W-1(V596_D-1) adding edge: AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) to C:W-1(V596_D-1) removing edge Edge(595->596,w:2.0)(A:W-1(V595_D-1)->C:W-1(V596_D-1)) removing edge Edge(549->595,w:2.0)(AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1)->A:W-1(V595_D-1)) Found potential edge: Edge(549->596,w:2.0) between AGTCCACCAC...TAAAGGAAAA:W4(V549_D-1) and C:W-1(V596_D-1) removing vertex C:W-1(V596_D-1) was concatenated into AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) Want to move edge Edge(596->597,w:2.0)(C:W-1(V596_D-1)->T:W-1(V597_D-1)) to (AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1)->T:W-1(V597_D-1) adding edge: AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) to T:W-1(V597_D-1) removing edge Edge(596->597,w:2.0)(C:W-1(V596_D-1)->T:W-1(V597_D-1)) removing edge Edge(549->596,w:2.0)(AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1)->C:W-1(V596_D-1)) Found potential edge: Edge(549->597,w:2.0) between AGTCCACCAC...AAAGGAAAAC:W4(V549_D-1) and T:W-1(V597_D-1) removing vertex T:W-1(V597_D-1) was concatenated into AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) Want to move edge Edge(597->598,w:2.0)(T:W-1(V597_D-1)->G:W-1(V598_D-1)) to (AGTCCACCAC...AAGGAAAACT:W4(V549_D-1)->G:W-1(V598_D-1) adding edge: AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) to G:W-1(V598_D-1) removing edge Edge(597->598,w:2.0)(T:W-1(V597_D-1)->G:W-1(V598_D-1)) removing edge Edge(549->597,w:2.0)(AGTCCACCAC...AAGGAAAACT:W4(V549_D-1)->T:W-1(V597_D-1)) Found potential edge: Edge(549->598,w:2.0) between AGTCCACCAC...AAGGAAAACT:W4(V549_D-1) and G:W-1(V598_D-1) removing vertex G:W-1(V598_D-1) was concatenated into AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) Want to move edge Edge(598->599,w:2.0)(G:W-1(V598_D-1)->C:W-1(V599_D-1)) to (AGTCCACCAC...AGGAAAACTG:W4(V549_D-1)->C:W-1(V599_D-1) adding edge: AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) to C:W-1(V599_D-1) removing edge Edge(598->599,w:2.0)(G:W-1(V598_D-1)->C:W-1(V599_D-1)) removing edge Edge(549->598,w:2.0)(AGTCCACCAC...AGGAAAACTG:W4(V549_D-1)->G:W-1(V598_D-1)) Found potential edge: Edge(549->599,w:2.0) between AGTCCACCAC...AGGAAAACTG:W4(V549_D-1) and C:W-1(V599_D-1) removing vertex C:W-1(V599_D-1) was concatenated into AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) Want to move edge Edge(599->600,w:2.0)(C:W-1(V599_D-1)->A:W-1(V600_D-1)) to (AGTCCACCAC...GGAAAACTGC:W4(V549_D-1)->A:W-1(V600_D-1) adding edge: AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) to A:W-1(V600_D-1) removing edge Edge(599->600,w:2.0)(C:W-1(V599_D-1)->A:W-1(V600_D-1)) removing edge Edge(549->599,w:2.0)(AGTCCACCAC...GGAAAACTGC:W4(V549_D-1)->C:W-1(V599_D-1)) Found potential edge: Edge(549->600,w:2.0) between AGTCCACCAC...GGAAAACTGC:W4(V549_D-1) and A:W-1(V600_D-1) removing vertex A:W-1(V600_D-1) was concatenated into AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) Want to move edge Edge(600->601,w:2.0)(A:W-1(V600_D-1)->T:W-1(V601_D-1)) to (AGTCCACCAC...GAAAACTGCA:W4(V549_D-1)->T:W-1(V601_D-1) adding edge: AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) to T:W-1(V601_D-1) removing edge Edge(600->601,w:2.0)(A:W-1(V600_D-1)->T:W-1(V601_D-1)) removing edge Edge(549->600,w:2.0)(AGTCCACCAC...GAAAACTGCA:W4(V549_D-1)->A:W-1(V600_D-1)) Found potential edge: Edge(549->601,w:2.0) between AGTCCACCAC...GAAAACTGCA:W4(V549_D-1) and T:W-1(V601_D-1) removing vertex T:W-1(V601_D-1) was concatenated into AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) Want to move edge Edge(601->602,w:2.0)(T:W-1(V601_D-1)->C:W-1(V602_D-1)) to (AGTCCACCAC...AAAACTGCAT:W4(V549_D-1)->C:W-1(V602_D-1) adding edge: AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) to C:W-1(V602_D-1) removing edge Edge(601->602,w:2.0)(T:W-1(V601_D-1)->C:W-1(V602_D-1)) removing edge Edge(549->601,w:2.0)(AGTCCACCAC...AAAACTGCAT:W4(V549_D-1)->T:W-1(V601_D-1)) Found potential edge: Edge(549->602,w:2.0) between AGTCCACCAC...AAAACTGCAT:W4(V549_D-1) and C:W-1(V602_D-1) removing vertex C:W-1(V602_D-1) was concatenated into AGTCCACCAC...AAACTGCATC:W4(V549_D-1) Want to move edge Edge(602->603,w:2.0)(C:W-1(V602_D-1)->T:W-1(V603_D-1)) to (AGTCCACCAC...AAACTGCATC:W4(V549_D-1)->T:W-1(V603_D-1) adding edge: AGTCCACCAC...AAACTGCATC:W4(V549_D-1) to T:W-1(V603_D-1) removing edge Edge(602->603,w:2.0)(C:W-1(V602_D-1)->T:W-1(V603_D-1)) removing edge Edge(549->602,w:2.0)(AGTCCACCAC...AAACTGCATC:W4(V549_D-1)->C:W-1(V602_D-1)) Found potential edge: Edge(549->603,w:2.0) between AGTCCACCAC...AAACTGCATC:W4(V549_D-1) and T:W-1(V603_D-1) removing vertex T:W-1(V603_D-1) was concatenated into AGTCCACCAC...AACTGCATCT:W4(V549_D-1) Want to move edge Edge(603->604,w:2.0)(T:W-1(V603_D-1)->T:W-1(V604_D-1)) to (AGTCCACCAC...AACTGCATCT:W4(V549_D-1)->T:W-1(V604_D-1) adding edge: AGTCCACCAC...AACTGCATCT:W4(V549_D-1) to T:W-1(V604_D-1) removing edge Edge(603->604,w:2.0)(T:W-1(V603_D-1)->T:W-1(V604_D-1)) removing edge Edge(549->603,w:2.0)(AGTCCACCAC...AACTGCATCT:W4(V549_D-1)->T:W-1(V603_D-1)) Found potential edge: Edge(549->604,w:2.0) between AGTCCACCAC...AACTGCATCT:W4(V549_D-1) and T:W-1(V604_D-1) removing vertex T:W-1(V604_D-1) was concatenated into AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) Want to move edge Edge(604->605,w:2.0)(T:W-1(V604_D-1)->T:W-1(V605_D-1)) to (AGTCCACCAC...ACTGCATCTT:W4(V549_D-1)->T:W-1(V605_D-1) adding edge: AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) to T:W-1(V605_D-1) removing edge Edge(604->605,w:2.0)(T:W-1(V604_D-1)->T:W-1(V605_D-1)) removing edge Edge(549->604,w:2.0)(AGTCCACCAC...ACTGCATCTT:W4(V549_D-1)->T:W-1(V604_D-1)) Found potential edge: Edge(549->605,w:2.0) between AGTCCACCAC...ACTGCATCTT:W4(V549_D-1) and T:W-1(V605_D-1) removing vertex T:W-1(V605_D-1) was concatenated into AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) Want to move edge Edge(605->606,w:2.0)(T:W-1(V605_D-1)->G:W-1(V606_D-1)) to (AGTCCACCAC...CTGCATCTTT:W4(V549_D-1)->G:W-1(V606_D-1) adding edge: AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) to G:W-1(V606_D-1) removing edge Edge(605->606,w:2.0)(T:W-1(V605_D-1)->G:W-1(V606_D-1)) removing edge Edge(549->605,w:2.0)(AGTCCACCAC...CTGCATCTTT:W4(V549_D-1)->T:W-1(V605_D-1)) Found potential edge: Edge(549->606,w:2.0) between AGTCCACCAC...CTGCATCTTT:W4(V549_D-1) and G:W-1(V606_D-1) removing vertex G:W-1(V606_D-1) was concatenated into AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) Want to move edge Edge(606->607,w:4.0)(G:W-1(V606_D-1)->C:W-1(V607_D-1)) to (AGTCCACCAC...TGCATCTTTG:W4(V549_D-1)->C:W-1(V607_D-1) adding edge: AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) to C:W-1(V607_D-1) removing edge Edge(606->607,w:4.0)(G:W-1(V606_D-1)->C:W-1(V607_D-1)) removing edge Edge(549->606,w:2.0)(AGTCCACCAC...TGCATCTTTG:W4(V549_D-1)->G:W-1(V606_D-1)) Found potential edge: Edge(549->607,w:4.0) between AGTCCACCAC...TGCATCTTTG:W4(V549_D-1) and C:W-1(V607_D-1) removing vertex C:W-1(V607_D-1) was concatenated into AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) Want to move edge Edge(607->608,w:4.0)(C:W-1(V607_D-1)->C:W-1(V608_D-1)) to (AGTCCACCAC...GCATCTTTGC:W4(V549_D-1)->C:W-1(V608_D-1) adding edge: AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) to C:W-1(V608_D-1) removing edge Edge(607->608,w:4.0)(C:W-1(V607_D-1)->C:W-1(V608_D-1)) removing edge Edge(549->607,w:4.0)(AGTCCACCAC...GCATCTTTGC:W4(V549_D-1)->C:W-1(V607_D-1)) Found potential edge: Edge(549->608,w:4.0) between AGTCCACCAC...GCATCTTTGC:W4(V549_D-1) and C:W-1(V608_D-1) removing vertex C:W-1(V608_D-1) was concatenated into AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) Want to move edge Edge(608->609,w:4.0)(C:W-1(V608_D-1)->C:W-1(V609_D-1)) to (AGTCCACCAC...CATCTTTGCC:W4(V549_D-1)->C:W-1(V609_D-1) adding edge: AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) to C:W-1(V609_D-1) removing edge Edge(608->609,w:4.0)(C:W-1(V608_D-1)->C:W-1(V609_D-1)) removing edge Edge(549->608,w:4.0)(AGTCCACCAC...CATCTTTGCC:W4(V549_D-1)->C:W-1(V608_D-1)) Found potential edge: Edge(549->609,w:4.0) between AGTCCACCAC...CATCTTTGCC:W4(V549_D-1) and C:W-1(V609_D-1) removing vertex C:W-1(V609_D-1) was concatenated into AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) Want to move edge Edge(609->610,w:4.0)(C:W-1(V609_D-1)->A:W-1(V610_D-1)) to (AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1)->A:W-1(V610_D-1) adding edge: AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) to A:W-1(V610_D-1) removing edge Edge(609->610,w:4.0)(C:W-1(V609_D-1)->A:W-1(V610_D-1)) removing edge Edge(549->609,w:4.0)(AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1)->C:W-1(V609_D-1)) Found potential edge: Edge(549->610,w:4.0) between AGTCCACCAC...ATCTTTGCCC:W4(V549_D-1) and A:W-1(V610_D-1) removing vertex A:W-1(V610_D-1) was concatenated into AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) Want to move edge Edge(610->611,w:4.0)(A:W-1(V610_D-1)->C:W-1(V611_D-1)) to (AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1)->C:W-1(V611_D-1) adding edge: AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) to C:W-1(V611_D-1) removing edge Edge(610->611,w:4.0)(A:W-1(V610_D-1)->C:W-1(V611_D-1)) removing edge Edge(549->610,w:4.0)(AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1)->A:W-1(V610_D-1)) Found potential edge: Edge(549->611,w:4.0) between AGTCCACCAC...TCTTTGCCCA:W4(V549_D-1) and C:W-1(V611_D-1) removing vertex C:W-1(V611_D-1) was concatenated into AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) Want to move edge Edge(611->612,w:4.0)(C:W-1(V611_D-1)->A:W-1(V612_D-1)) to (AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1)->A:W-1(V612_D-1) adding edge: AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) to A:W-1(V612_D-1) removing edge Edge(611->612,w:4.0)(C:W-1(V611_D-1)->A:W-1(V612_D-1)) removing edge Edge(549->611,w:4.0)(AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1)->C:W-1(V611_D-1)) Found potential edge: Edge(549->612,w:4.0) between AGTCCACCAC...CTTTGCCCAC:W4(V549_D-1) and A:W-1(V612_D-1) removing vertex A:W-1(V612_D-1) was concatenated into AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) Want to move edge Edge(612->613,w:6.0)(A:W-1(V612_D-1)->T:W-1(V613_D-1)) to (AGTCCACCAC...TTTGCCCACA:W4(V549_D-1)->T:W-1(V613_D-1) adding edge: AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) to T:W-1(V613_D-1) removing edge Edge(612->613,w:6.0)(A:W-1(V612_D-1)->T:W-1(V613_D-1)) removing edge Edge(549->612,w:4.0)(AGTCCACCAC...TTTGCCCACA:W4(V549_D-1)->A:W-1(V612_D-1)) Found potential edge: Edge(549->613,w:6.0) between AGTCCACCAC...TTTGCCCACA:W4(V549_D-1) and T:W-1(V613_D-1) removing vertex T:W-1(V613_D-1) was concatenated into AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) Want to move edge Edge(613->614,w:6.0)(T:W-1(V613_D-1)->G:W-1(V614_D-1)) to (AGTCCACCAC...TTGCCCACAT:W4(V549_D-1)->G:W-1(V614_D-1) adding edge: AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) to G:W-1(V614_D-1) removing edge Edge(613->614,w:6.0)(T:W-1(V613_D-1)->G:W-1(V614_D-1)) removing edge Edge(549->613,w:6.0)(AGTCCACCAC...TTGCCCACAT:W4(V549_D-1)->T:W-1(V613_D-1)) Found potential edge: Edge(549->614,w:6.0) between AGTCCACCAC...TTGCCCACAT:W4(V549_D-1) and G:W-1(V614_D-1) removing vertex G:W-1(V614_D-1) was concatenated into AGTCCACCAC...TGCCCACATG:W4(V549_D-1) Want to move edge Edge(614->615,w:6.0)(G:W-1(V614_D-1)->A:W-1(V615_D-1)) to (AGTCCACCAC...TGCCCACATG:W4(V549_D-1)->A:W-1(V615_D-1) adding edge: AGTCCACCAC...TGCCCACATG:W4(V549_D-1) to A:W-1(V615_D-1) removing edge Edge(614->615,w:6.0)(G:W-1(V614_D-1)->A:W-1(V615_D-1)) removing edge Edge(549->614,w:6.0)(AGTCCACCAC...TGCCCACATG:W4(V549_D-1)->G:W-1(V614_D-1)) Found potential edge: Edge(549->615,w:6.0) between AGTCCACCAC...TGCCCACATG:W4(V549_D-1) and A:W-1(V615_D-1) removing vertex A:W-1(V615_D-1) was concatenated into AGTCCACCAC...GCCCACATGA:W4(V549_D-1) Want to move edge Edge(615->616,w:6.0)(A:W-1(V615_D-1)->T:W-1(V616_D-1)) to (AGTCCACCAC...GCCCACATGA:W4(V549_D-1)->T:W-1(V616_D-1) adding edge: AGTCCACCAC...GCCCACATGA:W4(V549_D-1) to T:W-1(V616_D-1) removing edge Edge(615->616,w:6.0)(A:W-1(V615_D-1)->T:W-1(V616_D-1)) removing edge Edge(549->615,w:6.0)(AGTCCACCAC...GCCCACATGA:W4(V549_D-1)->A:W-1(V615_D-1)) Found potential edge: Edge(549->616,w:6.0) between AGTCCACCAC...GCCCACATGA:W4(V549_D-1) and T:W-1(V616_D-1) removing vertex T:W-1(V616_D-1) was concatenated into AGTCCACCAC...CCCACATGAT:W4(V549_D-1) Want to move edge Edge(616->617,w:6.0)(T:W-1(V616_D-1)->G:W-1(V617_D-1)) to (AGTCCACCAC...CCCACATGAT:W4(V549_D-1)->G:W-1(V617_D-1) adding edge: AGTCCACCAC...CCCACATGAT:W4(V549_D-1) to G:W-1(V617_D-1) removing edge Edge(616->617,w:6.0)(T:W-1(V616_D-1)->G:W-1(V617_D-1)) removing edge Edge(549->616,w:6.0)(AGTCCACCAC...CCCACATGAT:W4(V549_D-1)->T:W-1(V616_D-1)) Found potential edge: Edge(549->617,w:6.0) between AGTCCACCAC...CCCACATGAT:W4(V549_D-1) and G:W-1(V617_D-1) removing vertex G:W-1(V617_D-1) was concatenated into AGTCCACCAC...CCACATGATG:W4(V549_D-1) Want to move edge Edge(617->618,w:6.0)(G:W-1(V617_D-1)->C:W-1(V618_D-1)) to (AGTCCACCAC...CCACATGATG:W4(V549_D-1)->C:W-1(V618_D-1) adding edge: AGTCCACCAC...CCACATGATG:W4(V549_D-1) to C:W-1(V618_D-1) removing edge Edge(617->618,w:6.0)(G:W-1(V617_D-1)->C:W-1(V618_D-1)) removing edge Edge(549->617,w:6.0)(AGTCCACCAC...CCACATGATG:W4(V549_D-1)->G:W-1(V617_D-1)) Found potential edge: Edge(549->618,w:6.0) between AGTCCACCAC...CCACATGATG:W4(V549_D-1) and C:W-1(V618_D-1) removing vertex C:W-1(V618_D-1) was concatenated into AGTCCACCAC...CACATGATGC:W4(V549_D-1) Want to move edge Edge(618->619,w:6.0)(C:W-1(V618_D-1)->T:W-1(V619_D-1)) to (AGTCCACCAC...CACATGATGC:W4(V549_D-1)->T:W-1(V619_D-1) adding edge: AGTCCACCAC...CACATGATGC:W4(V549_D-1) to T:W-1(V619_D-1) removing edge Edge(618->619,w:6.0)(C:W-1(V618_D-1)->T:W-1(V619_D-1)) removing edge Edge(549->618,w:6.0)(AGTCCACCAC...CACATGATGC:W4(V549_D-1)->C:W-1(V618_D-1)) Found potential edge: Edge(549->619,w:6.0) between AGTCCACCAC...CACATGATGC:W4(V549_D-1) and T:W-1(V619_D-1) removing vertex T:W-1(V619_D-1) was concatenated into AGTCCACCAC...ACATGATGCT:W4(V549_D-1) Want to move edge Edge(619->620,w:4.0)(T:W-1(V619_D-1)->T:W-1(V620_D-1)) to (AGTCCACCAC...ACATGATGCT:W4(V549_D-1)->T:W-1(V620_D-1) adding edge: AGTCCACCAC...ACATGATGCT:W4(V549_D-1) to T:W-1(V620_D-1) removing edge Edge(619->620,w:4.0)(T:W-1(V619_D-1)->T:W-1(V620_D-1)) removing edge Edge(549->619,w:6.0)(AGTCCACCAC...ACATGATGCT:W4(V549_D-1)->T:W-1(V619_D-1)) Found potential edge: Edge(549->620,w:4.0) between AGTCCACCAC...ACATGATGCT:W4(V549_D-1) and T:W-1(V620_D-1) removing vertex T:W-1(V620_D-1) was concatenated into AGTCCACCAC...CATGATGCTT:W4(V549_D-1) Want to move edge Edge(620->621,w:4.0)(T:W-1(V620_D-1)->G:W-1(V621_D-1)) to (AGTCCACCAC...CATGATGCTT:W4(V549_D-1)->G:W-1(V621_D-1) adding edge: AGTCCACCAC...CATGATGCTT:W4(V549_D-1) to G:W-1(V621_D-1) removing edge Edge(620->621,w:4.0)(T:W-1(V620_D-1)->G:W-1(V621_D-1)) removing edge Edge(549->620,w:4.0)(AGTCCACCAC...CATGATGCTT:W4(V549_D-1)->T:W-1(V620_D-1)) Found potential edge: Edge(549->621,w:4.0) between AGTCCACCAC...CATGATGCTT:W4(V549_D-1) and G:W-1(V621_D-1) removing vertex G:W-1(V621_D-1) was concatenated into AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) Want to move edge Edge(621->622,w:4.0)(G:W-1(V621_D-1)->G:W-1(V622_D-1)) to (AGTCCACCAC...ATGATGCTTG:W4(V549_D-1)->G:W-1(V622_D-1) adding edge: AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) to G:W-1(V622_D-1) removing edge Edge(621->622,w:4.0)(G:W-1(V621_D-1)->G:W-1(V622_D-1)) removing edge Edge(549->621,w:4.0)(AGTCCACCAC...ATGATGCTTG:W4(V549_D-1)->G:W-1(V621_D-1)) Found potential edge: Edge(549->622,w:4.0) between AGTCCACCAC...ATGATGCTTG:W4(V549_D-1) and G:W-1(V622_D-1) removing vertex G:W-1(V622_D-1) was concatenated into AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) Want to move edge Edge(622->623,w:4.0)(G:W-1(V622_D-1)->T:W-1(V623_D-1)) to (AGTCCACCAC...TGATGCTTGG:W4(V549_D-1)->T:W-1(V623_D-1) adding edge: AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) to T:W-1(V623_D-1) removing edge Edge(622->623,w:4.0)(G:W-1(V622_D-1)->T:W-1(V623_D-1)) removing edge Edge(549->622,w:4.0)(AGTCCACCAC...TGATGCTTGG:W4(V549_D-1)->G:W-1(V622_D-1)) Found potential edge: Edge(549->623,w:4.0) between AGTCCACCAC...TGATGCTTGG:W4(V549_D-1) and T:W-1(V623_D-1) removing vertex T:W-1(V623_D-1) was concatenated into AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) Want to move edge Edge(623->624,w:4.0)(T:W-1(V623_D-1)->T:W-1(V624_D-1)) to (AGTCCACCAC...GATGCTTGGT:W4(V549_D-1)->T:W-1(V624_D-1) adding edge: AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) to T:W-1(V624_D-1) removing edge Edge(623->624,w:4.0)(T:W-1(V623_D-1)->T:W-1(V624_D-1)) removing edge Edge(549->623,w:4.0)(AGTCCACCAC...GATGCTTGGT:W4(V549_D-1)->T:W-1(V623_D-1)) Found potential edge: Edge(549->624,w:4.0) between AGTCCACCAC...GATGCTTGGT:W4(V549_D-1) and T:W-1(V624_D-1) removing vertex T:W-1(V624_D-1) was concatenated into AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) Want to move edge Edge(624->625,w:4.0)(T:W-1(V624_D-1)->A:W-1(V625_D-1)) to (AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1)->A:W-1(V625_D-1) adding edge: AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) to A:W-1(V625_D-1) removing edge Edge(624->625,w:4.0)(T:W-1(V624_D-1)->A:W-1(V625_D-1)) removing edge Edge(549->624,w:4.0)(AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1)->T:W-1(V624_D-1)) Found potential edge: Edge(549->625,w:4.0) between AGTCCACCAC...ATGCTTGGTT:W4(V549_D-1) and A:W-1(V625_D-1) removing vertex A:W-1(V625_D-1) was concatenated into AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) Want to move edge Edge(625->626,w:4.0)(A:W-1(V625_D-1)->A:W-1(V626_D-1)) to (AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1)->A:W-1(V626_D-1) adding edge: AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) to A:W-1(V626_D-1) removing edge Edge(625->626,w:4.0)(A:W-1(V625_D-1)->A:W-1(V626_D-1)) removing edge Edge(549->625,w:4.0)(AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1)->A:W-1(V625_D-1)) Found potential edge: Edge(549->626,w:4.0) between AGTCCACCAC...TGCTTGGTTA:W4(V549_D-1) and A:W-1(V626_D-1) removing vertex A:W-1(V626_D-1) was concatenated into AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) Want to move edge Edge(626->627,w:4.0)(A:W-1(V626_D-1)->G:W-1(V627_D-1)) to (AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1)->G:W-1(V627_D-1) adding edge: AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) to G:W-1(V627_D-1) removing edge Edge(626->627,w:4.0)(A:W-1(V626_D-1)->G:W-1(V627_D-1)) removing edge Edge(549->626,w:4.0)(AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1)->A:W-1(V626_D-1)) Found potential edge: Edge(549->627,w:4.0) between AGTCCACCAC...GCTTGGTTAA:W4(V549_D-1) and G:W-1(V627_D-1) removing vertex G:W-1(V627_D-1) was concatenated into AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) Want to move edge Edge(627->628,w:4.0)(G:W-1(V627_D-1)->A:W-1(V628_D-1)) to (AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1)->A:W-1(V628_D-1) adding edge: AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) to A:W-1(V628_D-1) removing edge Edge(627->628,w:4.0)(G:W-1(V627_D-1)->A:W-1(V628_D-1)) removing edge Edge(549->627,w:4.0)(AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1)->G:W-1(V627_D-1)) Found potential edge: Edge(549->628,w:4.0) between AGTCCACCAC...CTTGGTTAAG:W4(V549_D-1) and A:W-1(V628_D-1) removing vertex A:W-1(V628_D-1) was concatenated into AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) Want to move edge Edge(628->629,w:4.0)(A:W-1(V628_D-1)->C:W-1(V629_D-1)) to (AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1)->C:W-1(V629_D-1) adding edge: AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) to C:W-1(V629_D-1) removing edge Edge(628->629,w:4.0)(A:W-1(V628_D-1)->C:W-1(V629_D-1)) removing edge Edge(549->628,w:4.0)(AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1)->A:W-1(V628_D-1)) Found potential edge: Edge(549->629,w:4.0) between AGTCCACCAC...TTGGTTAAGA:W4(V549_D-1) and C:W-1(V629_D-1) removing vertex C:W-1(V629_D-1) was concatenated into AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) Want to move edge Edge(629->630,w:4.0)(C:W-1(V629_D-1)->A:W-1(V630_D-1)) to (AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1)->A:W-1(V630_D-1) adding edge: AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) to A:W-1(V630_D-1) removing edge Edge(629->630,w:4.0)(C:W-1(V629_D-1)->A:W-1(V630_D-1)) removing edge Edge(549->629,w:4.0)(AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1)->C:W-1(V629_D-1)) Found potential edge: Edge(549->630,w:4.0) between AGTCCACCAC...TGGTTAAGAC:W4(V549_D-1) and A:W-1(V630_D-1) removing vertex A:W-1(V630_D-1) was concatenated into AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) Want to move edge Edge(630->631,w:4.0)(A:W-1(V630_D-1)->A:W-1(V631_D-1)) to (AGTCCACCAC...GGTTAAGACA:W4(V549_D-1)->A:W-1(V631_D-1) adding edge: AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) to A:W-1(V631_D-1) removing edge Edge(630->631,w:4.0)(A:W-1(V630_D-1)->A:W-1(V631_D-1)) removing edge Edge(549->630,w:4.0)(AGTCCACCAC...GGTTAAGACA:W4(V549_D-1)->A:W-1(V630_D-1)) Found potential edge: Edge(549->631,w:4.0) between AGTCCACCAC...GGTTAAGACA:W4(V549_D-1) and A:W-1(V631_D-1) removing vertex A:W-1(V631_D-1) was concatenated into AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) Want to move edge Edge(631->632,w:6.0)(A:W-1(V631_D-1)->G:W-1(V632_D-1)) to (AGTCCACCAC...GTTAAGACAA:W4(V549_D-1)->G:W-1(V632_D-1) adding edge: AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) to G:W-1(V632_D-1) removing edge Edge(631->632,w:6.0)(A:W-1(V631_D-1)->G:W-1(V632_D-1)) removing edge Edge(549->631,w:4.0)(AGTCCACCAC...GTTAAGACAA:W4(V549_D-1)->A:W-1(V631_D-1)) Found potential edge: Edge(549->632,w:6.0) between AGTCCACCAC...GTTAAGACAA:W4(V549_D-1) and G:W-1(V632_D-1) removing vertex G:W-1(V632_D-1) was concatenated into AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) Want to move edge Edge(632->633,w:6.0)(G:W-1(V632_D-1)->G:W-1(V633_D-1)) to (AGTCCACCAC...TTAAGACAAG:W4(V549_D-1)->G:W-1(V633_D-1) adding edge: AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) to G:W-1(V633_D-1) removing edge Edge(632->633,w:6.0)(G:W-1(V632_D-1)->G:W-1(V633_D-1)) removing edge Edge(549->632,w:6.0)(AGTCCACCAC...TTAAGACAAG:W4(V549_D-1)->G:W-1(V632_D-1)) Found potential edge: Edge(549->633,w:6.0) between AGTCCACCAC...TTAAGACAAG:W4(V549_D-1) and G:W-1(V633_D-1) removing vertex G:W-1(V633_D-1) was concatenated into AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) Want to move edge Edge(633->634,w:6.0)(G:W-1(V633_D-1)->G:W-1(V634_D-1)) to (AGTCCACCAC...TAAGACAAGG:W4(V549_D-1)->G:W-1(V634_D-1) adding edge: AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) to G:W-1(V634_D-1) removing edge Edge(633->634,w:6.0)(G:W-1(V633_D-1)->G:W-1(V634_D-1)) removing edge Edge(549->633,w:6.0)(AGTCCACCAC...TAAGACAAGG:W4(V549_D-1)->G:W-1(V633_D-1)) Found potential edge: Edge(549->634,w:6.0) between AGTCCACCAC...TAAGACAAGG:W4(V549_D-1) and G:W-1(V634_D-1) removing vertex G:W-1(V634_D-1) was concatenated into AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) Want to move edge Edge(634->635,w:6.0)(G:W-1(V634_D-1)->G:W-1(V635_D-1)) to (AGTCCACCAC...AAGACAAGGG:W4(V549_D-1)->G:W-1(V635_D-1) adding edge: AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) to G:W-1(V635_D-1) removing edge Edge(634->635,w:6.0)(G:W-1(V634_D-1)->G:W-1(V635_D-1)) removing edge Edge(549->634,w:6.0)(AGTCCACCAC...AAGACAAGGG:W4(V549_D-1)->G:W-1(V634_D-1)) Found potential edge: Edge(549->635,w:6.0) between AGTCCACCAC...AAGACAAGGG:W4(V549_D-1) and G:W-1(V635_D-1) removing vertex G:W-1(V635_D-1) was concatenated into AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) Want to move edge Edge(635->636,w:6.0)(G:W-1(V635_D-1)->T:W-1(V636_D-1)) to (AGTCCACCAC...AGACAAGGGG:W4(V549_D-1)->T:W-1(V636_D-1) adding edge: AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) to T:W-1(V636_D-1) removing edge Edge(635->636,w:6.0)(G:W-1(V635_D-1)->T:W-1(V636_D-1)) removing edge Edge(549->635,w:6.0)(AGTCCACCAC...AGACAAGGGG:W4(V549_D-1)->G:W-1(V635_D-1)) Found potential edge: Edge(549->636,w:6.0) between AGTCCACCAC...AGACAAGGGG:W4(V549_D-1) and T:W-1(V636_D-1) removing vertex T:W-1(V636_D-1) was concatenated into AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) Want to move edge Edge(636->637,w:6.0)(T:W-1(V636_D-1)->T:W-1(V637_D-1)) to (AGTCCACCAC...GACAAGGGGT:W4(V549_D-1)->T:W-1(V637_D-1) adding edge: AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) to T:W-1(V637_D-1) removing edge Edge(636->637,w:6.0)(T:W-1(V636_D-1)->T:W-1(V637_D-1)) removing edge Edge(549->636,w:6.0)(AGTCCACCAC...GACAAGGGGT:W4(V549_D-1)->T:W-1(V636_D-1)) Found potential edge: Edge(549->637,w:6.0) between AGTCCACCAC...GACAAGGGGT:W4(V549_D-1) and T:W-1(V637_D-1) removing vertex T:W-1(V637_D-1) was concatenated into AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) Want to move edge Edge(637->638,w:6.0)(T:W-1(V637_D-1)->A:W-1(V638_D-1)) to (AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1)->A:W-1(V638_D-1) adding edge: AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) to A:W-1(V638_D-1) removing edge Edge(637->638,w:6.0)(T:W-1(V637_D-1)->A:W-1(V638_D-1)) removing edge Edge(549->637,w:6.0)(AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1)->T:W-1(V637_D-1)) Found potential edge: Edge(549->638,w:6.0) between AGTCCACCAC...ACAAGGGGTT:W4(V549_D-1) and A:W-1(V638_D-1) removing vertex A:W-1(V638_D-1) was concatenated into AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) Want to move edge Edge(638->639,w:6.0)(A:W-1(V638_D-1)->G:W-1(V639_D-1)) to (AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1)->G:W-1(V639_D-1) adding edge: AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) to G:W-1(V639_D-1) removing edge Edge(638->639,w:6.0)(A:W-1(V638_D-1)->G:W-1(V639_D-1)) removing edge Edge(549->638,w:6.0)(AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1)->A:W-1(V638_D-1)) Found potential edge: Edge(549->639,w:6.0) between AGTCCACCAC...CAAGGGGTTA:W4(V549_D-1) and G:W-1(V639_D-1) removing vertex G:W-1(V639_D-1) was concatenated into AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) Want to move edge Edge(639->640,w:8.0)(G:W-1(V639_D-1)->T:W-1(V640_D-1)) to (AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1)->T:W-1(V640_D-1) adding edge: AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) to T:W-1(V640_D-1) removing edge Edge(639->640,w:8.0)(G:W-1(V639_D-1)->T:W-1(V640_D-1)) removing edge Edge(549->639,w:6.0)(AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1)->G:W-1(V639_D-1)) Found potential edge: Edge(549->640,w:8.0) between AGTCCACCAC...AAGGGGTTAG:W4(V549_D-1) and T:W-1(V640_D-1) removing vertex T:W-1(V640_D-1) was concatenated into AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) Want to move edge Edge(640->641,w:8.0)(T:W-1(V640_D-1)->G:W-1(V641_D-1)) to (AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1)->G:W-1(V641_D-1) adding edge: AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) to G:W-1(V641_D-1) removing edge Edge(640->641,w:8.0)(T:W-1(V640_D-1)->G:W-1(V641_D-1)) removing edge Edge(549->640,w:8.0)(AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1)->T:W-1(V640_D-1)) Found potential edge: Edge(549->641,w:8.0) between AGTCCACCAC...AGGGGTTAGT:W4(V549_D-1) and G:W-1(V641_D-1) removing vertex G:W-1(V641_D-1) was concatenated into AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) Want to move edge Edge(641->642,w:8.0)(G:W-1(V641_D-1)->A:W-1(V642_D-1)) to (AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1)->A:W-1(V642_D-1) adding edge: AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) to A:W-1(V642_D-1) removing edge Edge(641->642,w:8.0)(G:W-1(V641_D-1)->A:W-1(V642_D-1)) removing edge Edge(549->641,w:8.0)(AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1)->G:W-1(V641_D-1)) Found potential edge: Edge(549->642,w:8.0) between AGTCCACCAC...GGGGTTAGTG:W4(V549_D-1) and A:W-1(V642_D-1) removing vertex A:W-1(V642_D-1) was concatenated into AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) Want to move edge Edge(642->643,w:8.0)(A:W-1(V642_D-1)->C:W-1(V643_D-1)) to (AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1)->C:W-1(V643_D-1) adding edge: AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) to C:W-1(V643_D-1) removing edge Edge(642->643,w:8.0)(A:W-1(V642_D-1)->C:W-1(V643_D-1)) removing edge Edge(549->642,w:8.0)(AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1)->A:W-1(V642_D-1)) Found potential edge: Edge(549->643,w:8.0) between AGTCCACCAC...GGGTTAGTGA:W4(V549_D-1) and C:W-1(V643_D-1) removing vertex C:W-1(V643_D-1) was concatenated into AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) Want to move edge Edge(643->644,w:8.0)(C:W-1(V643_D-1)->A:W-1(V644_D-1)) to (AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1)->A:W-1(V644_D-1) adding edge: AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) to A:W-1(V644_D-1) removing edge Edge(643->644,w:8.0)(C:W-1(V643_D-1)->A:W-1(V644_D-1)) removing edge Edge(549->643,w:8.0)(AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1)->C:W-1(V643_D-1)) Found potential edge: Edge(549->644,w:8.0) between AGTCCACCAC...GGTTAGTGAC:W4(V549_D-1) and A:W-1(V644_D-1) removing vertex A:W-1(V644_D-1) was concatenated into AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) Want to move edge Edge(644->645,w:8.0)(A:W-1(V644_D-1)->A:W-1(V645_D-1)) to (AGTCCACCAC...GTTAGTGACA:W4(V549_D-1)->A:W-1(V645_D-1) adding edge: AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) to A:W-1(V645_D-1) removing edge Edge(644->645,w:8.0)(A:W-1(V644_D-1)->A:W-1(V645_D-1)) removing edge Edge(549->644,w:8.0)(AGTCCACCAC...GTTAGTGACA:W4(V549_D-1)->A:W-1(V644_D-1)) Found potential edge: Edge(549->645,w:8.0) between AGTCCACCAC...GTTAGTGACA:W4(V549_D-1) and A:W-1(V645_D-1) removing vertex A:W-1(V645_D-1) was concatenated into AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) Want to move edge Edge(645->646,w:8.0)(A:W-1(V645_D-1)->A:W-1(V646_D-1)) to (AGTCCACCAC...TTAGTGACAA:W4(V549_D-1)->A:W-1(V646_D-1) adding edge: AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) to A:W-1(V646_D-1) removing edge Edge(645->646,w:8.0)(A:W-1(V645_D-1)->A:W-1(V646_D-1)) removing edge Edge(549->645,w:8.0)(AGTCCACCAC...TTAGTGACAA:W4(V549_D-1)->A:W-1(V645_D-1)) Found potential edge: Edge(549->646,w:8.0) between AGTCCACCAC...TTAGTGACAA:W4(V549_D-1) and A:W-1(V646_D-1) removing vertex A:W-1(V646_D-1) was concatenated into AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) Want to move edge Edge(646->647,w:8.0)(A:W-1(V646_D-1)->G:W-1(V647_D-1)) to (AGTCCACCAC...TAGTGACAAA:W4(V549_D-1)->G:W-1(V647_D-1) adding edge: AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) to G:W-1(V647_D-1) removing edge Edge(646->647,w:8.0)(A:W-1(V646_D-1)->G:W-1(V647_D-1)) removing edge Edge(549->646,w:8.0)(AGTCCACCAC...TAGTGACAAA:W4(V549_D-1)->A:W-1(V646_D-1)) Found potential edge: Edge(549->647,w:8.0) between AGTCCACCAC...TAGTGACAAA:W4(V549_D-1) and G:W-1(V647_D-1) removing vertex G:W-1(V647_D-1) was concatenated into AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) Want to move edge Edge(647->648,w:8.0)(G:W-1(V647_D-1)->T:W-1(V648_D-1)) to (AGTCCACCAC...AGTGACAAAG:W4(V549_D-1)->T:W-1(V648_D-1) adding edge: AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) to T:W-1(V648_D-1) removing edge Edge(647->648,w:8.0)(G:W-1(V647_D-1)->T:W-1(V648_D-1)) removing edge Edge(549->647,w:8.0)(AGTCCACCAC...AGTGACAAAG:W4(V549_D-1)->G:W-1(V647_D-1)) Found potential edge: Edge(549->648,w:8.0) between AGTCCACCAC...AGTGACAAAG:W4(V549_D-1) and T:W-1(V648_D-1) removing vertex T:W-1(V648_D-1) was concatenated into AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) Want to move edge Edge(648->649,w:8.0)(T:W-1(V648_D-1)->A:W-1(V649_D-1)) to (AGTCCACCAC...GTGACAAAGT:W4(V549_D-1)->A:W-1(V649_D-1) adding edge: AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) to A:W-1(V649_D-1) removing edge Edge(648->649,w:8.0)(T:W-1(V648_D-1)->A:W-1(V649_D-1)) removing edge Edge(549->648,w:8.0)(AGTCCACCAC...GTGACAAAGT:W4(V549_D-1)->T:W-1(V648_D-1)) Found potential edge: Edge(549->649,w:8.0) between AGTCCACCAC...GTGACAAAGT:W4(V549_D-1) and A:W-1(V649_D-1) removing vertex A:W-1(V649_D-1) was concatenated into AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) Want to move edge Edge(649->650,w:8.0)(A:W-1(V649_D-1)->A:W-1(V650_D-1)) to (AGTCCACCAC...TGACAAAGTA:W4(V549_D-1)->A:W-1(V650_D-1) adding edge: AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) to A:W-1(V650_D-1) removing edge Edge(649->650,w:8.0)(A:W-1(V649_D-1)->A:W-1(V650_D-1)) removing edge Edge(549->649,w:8.0)(AGTCCACCAC...TGACAAAGTA:W4(V549_D-1)->A:W-1(V649_D-1)) Found potential edge: Edge(549->650,w:8.0) between AGTCCACCAC...TGACAAAGTA:W4(V549_D-1) and A:W-1(V650_D-1) removing vertex A:W-1(V650_D-1) was concatenated into AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) Want to move edge Edge(650->651,w:8.0)(A:W-1(V650_D-1)->A:W-1(V651_D-1)) to (AGTCCACCAC...GACAAAGTAA:W4(V549_D-1)->A:W-1(V651_D-1) adding edge: AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) to A:W-1(V651_D-1) removing edge Edge(650->651,w:8.0)(A:W-1(V650_D-1)->A:W-1(V651_D-1)) removing edge Edge(549->650,w:8.0)(AGTCCACCAC...GACAAAGTAA:W4(V549_D-1)->A:W-1(V650_D-1)) Found potential edge: Edge(549->651,w:8.0) between AGTCCACCAC...GACAAAGTAA:W4(V549_D-1) and A:W-1(V651_D-1) removing vertex A:W-1(V651_D-1) was concatenated into AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) Want to move edge Edge(651->652,w:8.0)(A:W-1(V651_D-1)->G:W-1(V652_D-1)) to (AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1)->G:W-1(V652_D-1) adding edge: AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) to G:W-1(V652_D-1) removing edge Edge(651->652,w:8.0)(A:W-1(V651_D-1)->G:W-1(V652_D-1)) removing edge Edge(549->651,w:8.0)(AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1)->A:W-1(V651_D-1)) Found potential edge: Edge(549->652,w:8.0) between AGTCCACCAC...ACAAAGTAAA:W5(V549_D-1) and G:W-1(V652_D-1) removing vertex G:W-1(V652_D-1) was concatenated into AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) Want to move edge Edge(652->653,w:8.0)(G:W-1(V652_D-1)->A:W-1(V653_D-1)) to (AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1)->A:W-1(V653_D-1) adding edge: AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) to A:W-1(V653_D-1) removing edge Edge(652->653,w:8.0)(G:W-1(V652_D-1)->A:W-1(V653_D-1)) removing edge Edge(549->652,w:8.0)(AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1)->G:W-1(V652_D-1)) Found potential edge: Edge(549->653,w:8.0) between AGTCCACCAC...CAAAGTAAAG:W5(V549_D-1) and A:W-1(V653_D-1) removing vertex A:W-1(V653_D-1) was concatenated into AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) Want to move edge Edge(653->654,w:8.0)(A:W-1(V653_D-1)->G:W-1(V654_D-1)) to (AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1)->G:W-1(V654_D-1) adding edge: AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) to G:W-1(V654_D-1) removing edge Edge(653->654,w:8.0)(A:W-1(V653_D-1)->G:W-1(V654_D-1)) removing edge Edge(549->653,w:8.0)(AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1)->A:W-1(V653_D-1)) Found potential edge: Edge(549->654,w:8.0) between AGTCCACCAC...AAAGTAAAGA:W5(V549_D-1) and G:W-1(V654_D-1) removing vertex G:W-1(V654_D-1) was concatenated into AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) Want to move edge Edge(654->655,w:10.0)(G:W-1(V654_D-1)->G:W-1(V655_D-1)) to (AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1)->G:W-1(V655_D-1) adding edge: AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) to G:W-1(V655_D-1) removing edge Edge(654->655,w:10.0)(G:W-1(V654_D-1)->G:W-1(V655_D-1)) removing edge Edge(549->654,w:8.0)(AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1)->G:W-1(V654_D-1)) Found potential edge: Edge(549->655,w:10.0) between AGTCCACCAC...AAGTAAAGAG:W5(V549_D-1) and G:W-1(V655_D-1) removing vertex G:W-1(V655_D-1) was concatenated into AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) Want to move edge Edge(655->656,w:10.0)(G:W-1(V655_D-1)->A:W-1(V656_D-1)) to (AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1)->A:W-1(V656_D-1) adding edge: AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) to A:W-1(V656_D-1) removing edge Edge(655->656,w:10.0)(G:W-1(V655_D-1)->A:W-1(V656_D-1)) removing edge Edge(549->655,w:10.0)(AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1)->G:W-1(V655_D-1)) Found potential edge: Edge(549->656,w:10.0) between AGTCCACCAC...AGTAAAGAGG:W5(V549_D-1) and A:W-1(V656_D-1) removing vertex A:W-1(V656_D-1) was concatenated into AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) Want to move edge Edge(656->657,w:10.0)(A:W-1(V656_D-1)->T:W-1(V657_D-1)) to (AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1)->T:W-1(V657_D-1) adding edge: AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) to T:W-1(V657_D-1) removing edge Edge(656->657,w:10.0)(A:W-1(V656_D-1)->T:W-1(V657_D-1)) removing edge Edge(549->656,w:10.0)(AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1)->A:W-1(V656_D-1)) Found potential edge: Edge(549->657,w:10.0) between AGTCCACCAC...GTAAAGAGGA:W5(V549_D-1) and T:W-1(V657_D-1) removing vertex T:W-1(V657_D-1) was concatenated into AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) Want to move edge Edge(657->658,w:12.0)(T:W-1(V657_D-1)->G:W-1(V658_D-1)) to (AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1)->G:W-1(V658_D-1) adding edge: AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) to G:W-1(V658_D-1) removing edge Edge(657->658,w:12.0)(T:W-1(V657_D-1)->G:W-1(V658_D-1)) removing edge Edge(549->657,w:10.0)(AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1)->T:W-1(V657_D-1)) Found potential edge: Edge(549->658,w:12.0) between AGTCCACCAC...TAAAGAGGAT:W5(V549_D-1) and G:W-1(V658_D-1) removing vertex G:W-1(V658_D-1) was concatenated into AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) Want to move edge Edge(658->659,w:10.0)(G:W-1(V658_D-1)->A:W-1(V659_D-1)) to (AGTCCACCAC...AAAGAGGATG:W5(V549_D-1)->A:W-1(V659_D-1) adding edge: AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) to A:W-1(V659_D-1) removing edge Edge(658->659,w:10.0)(G:W-1(V658_D-1)->A:W-1(V659_D-1)) removing edge Edge(549->658,w:12.0)(AGTCCACCAC...AAAGAGGATG:W5(V549_D-1)->G:W-1(V658_D-1)) Found potential edge: Edge(549->659,w:10.0) between AGTCCACCAC...AAAGAGGATG:W5(V549_D-1) and A:W-1(V659_D-1) removing vertex A:W-1(V659_D-1) was concatenated into AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) Want to move edge Edge(659->660,w:10.0)(A:W-1(V659_D-1)->C:W-1(V660_D-1)) to (AGTCCACCAC...AAGAGGATGA:W5(V549_D-1)->C:W-1(V660_D-1) adding edge: AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) to C:W-1(V660_D-1) removing edge Edge(659->660,w:10.0)(A:W-1(V659_D-1)->C:W-1(V660_D-1)) removing edge Edge(549->659,w:10.0)(AGTCCACCAC...AAGAGGATGA:W5(V549_D-1)->A:W-1(V659_D-1)) Found potential edge: Edge(549->660,w:10.0) between AGTCCACCAC...AAGAGGATGA:W5(V549_D-1) and C:W-1(V660_D-1) removing vertex C:W-1(V660_D-1) was concatenated into AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) Want to move edge Edge(660->661,w:10.0)(C:W-1(V660_D-1)->A:W-1(V661_D-1)) to (AGTCCACCAC...AGAGGATGAC:W5(V549_D-1)->A:W-1(V661_D-1) adding edge: AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) to A:W-1(V661_D-1) removing edge Edge(660->661,w:10.0)(C:W-1(V660_D-1)->A:W-1(V661_D-1)) removing edge Edge(549->660,w:10.0)(AGTCCACCAC...AGAGGATGAC:W5(V549_D-1)->C:W-1(V660_D-1)) Found potential edge: Edge(549->661,w:10.0) between AGTCCACCAC...AGAGGATGAC:W5(V549_D-1) and A:W-1(V661_D-1) removing vertex A:W-1(V661_D-1) was concatenated into AGTCCACCAC...GAGGATGACA:W5(V549_D-1) Want to move edge Edge(661->662,w:10.0)(A:W-1(V661_D-1)->G:W-1(V662_D-1)) to (AGTCCACCAC...GAGGATGACA:W5(V549_D-1)->G:W-1(V662_D-1) adding edge: AGTCCACCAC...GAGGATGACA:W5(V549_D-1) to G:W-1(V662_D-1) removing edge Edge(661->662,w:10.0)(A:W-1(V661_D-1)->G:W-1(V662_D-1)) removing edge Edge(549->661,w:10.0)(AGTCCACCAC...GAGGATGACA:W5(V549_D-1)->A:W-1(V661_D-1)) Found potential edge: Edge(549->662,w:10.0) between AGTCCACCAC...GAGGATGACA:W5(V549_D-1) and G:W-1(V662_D-1) removing vertex G:W-1(V662_D-1) was concatenated into AGTCCACCAC...AGGATGACAG:W5(V549_D-1) Want to move edge Edge(662->663,w:10.0)(G:W-1(V662_D-1)->A:W-1(V663_D-1)) to (AGTCCACCAC...AGGATGACAG:W5(V549_D-1)->A:W-1(V663_D-1) adding edge: AGTCCACCAC...AGGATGACAG:W5(V549_D-1) to A:W-1(V663_D-1) removing edge Edge(662->663,w:10.0)(G:W-1(V662_D-1)->A:W-1(V663_D-1)) removing edge Edge(549->662,w:10.0)(AGTCCACCAC...AGGATGACAG:W5(V549_D-1)->G:W-1(V662_D-1)) Found potential edge: Edge(549->663,w:10.0) between AGTCCACCAC...AGGATGACAG:W5(V549_D-1) and A:W-1(V663_D-1) removing vertex A:W-1(V663_D-1) was concatenated into AGTCCACCAC...GGATGACAGA:W5(V549_D-1) Want to move edge Edge(663->664,w:10.0)(A:W-1(V663_D-1)->C:W-1(V664_D-1)) to (AGTCCACCAC...GGATGACAGA:W5(V549_D-1)->C:W-1(V664_D-1) adding edge: AGTCCACCAC...GGATGACAGA:W5(V549_D-1) to C:W-1(V664_D-1) removing edge Edge(663->664,w:10.0)(A:W-1(V663_D-1)->C:W-1(V664_D-1)) removing edge Edge(549->663,w:10.0)(AGTCCACCAC...GGATGACAGA:W5(V549_D-1)->A:W-1(V663_D-1)) Found potential edge: Edge(549->664,w:10.0) between AGTCCACCAC...GGATGACAGA:W5(V549_D-1) and C:W-1(V664_D-1) removing vertex C:W-1(V664_D-1) was concatenated into AGTCCACCAC...GATGACAGAC:W5(V549_D-1) Want to move edge Edge(664->665,w:8.0)(C:W-1(V664_D-1)->T:W-1(V665_D-1)) to (AGTCCACCAC...GATGACAGAC:W5(V549_D-1)->T:W-1(V665_D-1) adding edge: AGTCCACCAC...GATGACAGAC:W5(V549_D-1) to T:W-1(V665_D-1) removing edge Edge(664->665,w:8.0)(C:W-1(V664_D-1)->T:W-1(V665_D-1)) removing edge Edge(549->664,w:10.0)(AGTCCACCAC...GATGACAGAC:W5(V549_D-1)->C:W-1(V664_D-1)) Found potential edge: Edge(549->665,w:8.0) between AGTCCACCAC...GATGACAGAC:W5(V549_D-1) and T:W-1(V665_D-1) removing vertex T:W-1(V665_D-1) was concatenated into AGTCCACCAC...ATGACAGACT:W5(V549_D-1) Want to move edge Edge(665->666,w:8.0)(T:W-1(V665_D-1)->C:W-1(V666_D-1)) to (AGTCCACCAC...ATGACAGACT:W5(V549_D-1)->C:W-1(V666_D-1) adding edge: AGTCCACCAC...ATGACAGACT:W5(V549_D-1) to C:W-1(V666_D-1) removing edge Edge(665->666,w:8.0)(T:W-1(V665_D-1)->C:W-1(V666_D-1)) removing edge Edge(549->665,w:8.0)(AGTCCACCAC...ATGACAGACT:W5(V549_D-1)->T:W-1(V665_D-1)) Found potential edge: Edge(549->666,w:8.0) between AGTCCACCAC...ATGACAGACT:W5(V549_D-1) and C:W-1(V666_D-1) removing vertex C:W-1(V666_D-1) was concatenated into AGTCCACCAC...TGACAGACTC:W5(V549_D-1) Want to move edge Edge(666->667,w:8.0)(C:W-1(V666_D-1)->T:W-1(V667_D-1)) to (AGTCCACCAC...TGACAGACTC:W5(V549_D-1)->T:W-1(V667_D-1) adding edge: AGTCCACCAC...TGACAGACTC:W5(V549_D-1) to T:W-1(V667_D-1) removing edge Edge(666->667,w:8.0)(C:W-1(V666_D-1)->T:W-1(V667_D-1)) removing edge Edge(549->666,w:8.0)(AGTCCACCAC...TGACAGACTC:W5(V549_D-1)->C:W-1(V666_D-1)) Found potential edge: Edge(549->667,w:8.0) between AGTCCACCAC...TGACAGACTC:W5(V549_D-1) and T:W-1(V667_D-1) removing vertex T:W-1(V667_D-1) was concatenated into AGTCCACCAC...GACAGACTCT:W5(V549_D-1) Want to move edge Edge(667->668,w:8.0)(T:W-1(V667_D-1)->C:W-1(V668_D-1)) to (AGTCCACCAC...GACAGACTCT:W5(V549_D-1)->C:W-1(V668_D-1) adding edge: AGTCCACCAC...GACAGACTCT:W5(V549_D-1) to C:W-1(V668_D-1) removing edge Edge(667->668,w:8.0)(T:W-1(V667_D-1)->C:W-1(V668_D-1)) removing edge Edge(549->667,w:8.0)(AGTCCACCAC...GACAGACTCT:W5(V549_D-1)->T:W-1(V667_D-1)) Found potential edge: Edge(549->668,w:8.0) between AGTCCACCAC...GACAGACTCT:W5(V549_D-1) and C:W-1(V668_D-1) removing vertex C:W-1(V668_D-1) was concatenated into AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) Want to move edge Edge(668->669,w:8.0)(C:W-1(V668_D-1)->T:W-1(V669_D-1)) to (AGTCCACCAC...ACAGACTCTC:W5(V549_D-1)->T:W-1(V669_D-1) adding edge: AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) to T:W-1(V669_D-1) removing edge Edge(668->669,w:8.0)(C:W-1(V668_D-1)->T:W-1(V669_D-1)) removing edge Edge(549->668,w:8.0)(AGTCCACCAC...ACAGACTCTC:W5(V549_D-1)->C:W-1(V668_D-1)) Found potential edge: Edge(549->669,w:8.0) between AGTCCACCAC...ACAGACTCTC:W5(V549_D-1) and T:W-1(V669_D-1) removing vertex T:W-1(V669_D-1) was concatenated into AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) Want to move edge Edge(669->670,w:8.0)(T:W-1(V669_D-1)->A:W-1(V670_D-1)) to (AGTCCACCAC...CAGACTCTCT:W5(V549_D-1)->A:W-1(V670_D-1) adding edge: AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) to A:W-1(V670_D-1) removing edge Edge(669->670,w:8.0)(T:W-1(V669_D-1)->A:W-1(V670_D-1)) removing edge Edge(549->669,w:8.0)(AGTCCACCAC...CAGACTCTCT:W5(V549_D-1)->T:W-1(V669_D-1)) Found potential edge: Edge(549->670,w:8.0) between AGTCCACCAC...CAGACTCTCT:W5(V549_D-1) and A:W-1(V670_D-1) removing vertex A:W-1(V670_D-1) was concatenated into AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) Want to move edge Edge(670->671,w:8.0)(A:W-1(V670_D-1)->A:W-1(V671_D-1)) to (AGTCCACCAC...AGACTCTCTA:W5(V549_D-1)->A:W-1(V671_D-1) adding edge: AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) to A:W-1(V671_D-1) removing edge Edge(670->671,w:8.0)(A:W-1(V670_D-1)->A:W-1(V671_D-1)) removing edge Edge(549->670,w:8.0)(AGTCCACCAC...AGACTCTCTA:W5(V549_D-1)->A:W-1(V670_D-1)) Found potential edge: Edge(549->671,w:8.0) between AGTCCACCAC...AGACTCTCTA:W5(V549_D-1) and A:W-1(V671_D-1) removing vertex A:W-1(V671_D-1) was concatenated into AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) Want to move edge Edge(671->672,w:8.0)(A:W-1(V671_D-1)->G:W-1(V672_D-1)) to (AGTCCACCAC...GACTCTCTAA:W5(V549_D-1)->G:W-1(V672_D-1) adding edge: AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) to G:W-1(V672_D-1) removing edge Edge(671->672,w:8.0)(A:W-1(V671_D-1)->G:W-1(V672_D-1)) removing edge Edge(549->671,w:8.0)(AGTCCACCAC...GACTCTCTAA:W5(V549_D-1)->A:W-1(V671_D-1)) Found potential edge: Edge(549->672,w:8.0) between AGTCCACCAC...GACTCTCTAA:W5(V549_D-1) and G:W-1(V672_D-1) removing vertex G:W-1(V672_D-1) was concatenated into AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) Want to move edge Edge(672->673,w:8.0)(G:W-1(V672_D-1)->G:W-1(V673_D-1)) to (AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1)->G:W-1(V673_D-1) adding edge: AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) to G:W-1(V673_D-1) removing edge Edge(672->673,w:8.0)(G:W-1(V672_D-1)->G:W-1(V673_D-1)) removing edge Edge(549->672,w:8.0)(AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1)->G:W-1(V672_D-1)) Found potential edge: Edge(549->673,w:8.0) between AGTCCACCAC...ACTCTCTAAG:W5(V549_D-1) and G:W-1(V673_D-1) removing vertex G:W-1(V673_D-1) was concatenated into AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) Want to move edge Edge(673->674,w:8.0)(G:W-1(V673_D-1)->G:W-1(V674_D-1)) to (AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1)->G:W-1(V674_D-1) adding edge: AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) to G:W-1(V674_D-1) removing edge Edge(673->674,w:8.0)(G:W-1(V673_D-1)->G:W-1(V674_D-1)) removing edge Edge(549->673,w:8.0)(AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1)->G:W-1(V673_D-1)) Found potential edge: Edge(549->674,w:8.0) between AGTCCACCAC...CTCTCTAAGG:W5(V549_D-1) and G:W-1(V674_D-1) removing vertex G:W-1(V674_D-1) was concatenated into AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) Want to move edge Edge(674->675,w:8.0)(G:W-1(V674_D-1)->A:W-1(V675_D-1)) to (AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1)->A:W-1(V675_D-1) adding edge: AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) to A:W-1(V675_D-1) removing edge Edge(674->675,w:8.0)(G:W-1(V674_D-1)->A:W-1(V675_D-1)) removing edge Edge(549->674,w:8.0)(AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1)->G:W-1(V674_D-1)) Found potential edge: Edge(549->675,w:8.0) between AGTCCACCAC...TCTCTAAGGG:W5(V549_D-1) and A:W-1(V675_D-1) removing vertex A:W-1(V675_D-1) was concatenated into AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) Want to move edge Edge(675->676,w:8.0)(A:W-1(V675_D-1)->C:W-1(V676_D-1)) to (AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1)->C:W-1(V676_D-1) adding edge: AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) to C:W-1(V676_D-1) removing edge Edge(675->676,w:8.0)(A:W-1(V675_D-1)->C:W-1(V676_D-1)) removing edge Edge(549->675,w:8.0)(AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1)->A:W-1(V675_D-1)) Found potential edge: Edge(549->676,w:8.0) between AGTCCACCAC...CTCTAAGGGA:W5(V549_D-1) and C:W-1(V676_D-1) removing vertex C:W-1(V676_D-1) was concatenated into AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) Want to move edge Edge(676->677,w:8.0)(C:W-1(V676_D-1)->A:W-1(V677_D-1)) to (AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1)->A:W-1(V677_D-1) adding edge: AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) to A:W-1(V677_D-1) removing edge Edge(676->677,w:8.0)(C:W-1(V676_D-1)->A:W-1(V677_D-1)) removing edge Edge(549->676,w:8.0)(AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1)->C:W-1(V676_D-1)) Found potential edge: Edge(549->677,w:8.0) between AGTCCACCAC...TCTAAGGGAC:W5(V549_D-1) and A:W-1(V677_D-1) removing vertex A:W-1(V677_D-1) was concatenated into AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) Want to move edge Edge(677->678,w:8.0)(A:W-1(V677_D-1)->T:W-1(V678_D-1)) to (AGTCCACCAC...CTAAGGGACA:W5(V549_D-1)->T:W-1(V678_D-1) adding edge: AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) to T:W-1(V678_D-1) removing edge Edge(677->678,w:8.0)(A:W-1(V677_D-1)->T:W-1(V678_D-1)) removing edge Edge(549->677,w:8.0)(AGTCCACCAC...CTAAGGGACA:W5(V549_D-1)->A:W-1(V677_D-1)) Found potential edge: Edge(549->678,w:8.0) between AGTCCACCAC...CTAAGGGACA:W5(V549_D-1) and T:W-1(V678_D-1) removing vertex T:W-1(V678_D-1) was concatenated into AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) Want to move edge Edge(678->679,w:8.0)(T:W-1(V678_D-1)->A:W-1(V679_D-1)) to (AGTCCACCAC...TAAGGGACAT:W5(V549_D-1)->A:W-1(V679_D-1) adding edge: AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) to A:W-1(V679_D-1) removing edge Edge(678->679,w:8.0)(T:W-1(V678_D-1)->A:W-1(V679_D-1)) removing edge Edge(549->678,w:8.0)(AGTCCACCAC...TAAGGGACAT:W5(V549_D-1)->T:W-1(V678_D-1)) Found potential edge: Edge(549->679,w:8.0) between AGTCCACCAC...TAAGGGACAT:W5(V549_D-1) and A:W-1(V679_D-1) removing vertex A:W-1(V679_D-1) was concatenated into AGTCCACCAC...AAGGGACATA:W5(V549_D-1) Want to move edge Edge(679->680,w:8.0)(A:W-1(V679_D-1)->T:W-1(V680_D-1)) to (AGTCCACCAC...AAGGGACATA:W5(V549_D-1)->T:W-1(V680_D-1) adding edge: AGTCCACCAC...AAGGGACATA:W5(V549_D-1) to T:W-1(V680_D-1) removing edge Edge(679->680,w:8.0)(A:W-1(V679_D-1)->T:W-1(V680_D-1)) removing edge Edge(549->679,w:8.0)(AGTCCACCAC...AAGGGACATA:W5(V549_D-1)->A:W-1(V679_D-1)) Found potential edge: Edge(549->680,w:8.0) between AGTCCACCAC...AAGGGACATA:W5(V549_D-1) and T:W-1(V680_D-1) removing vertex T:W-1(V680_D-1) was concatenated into AGTCCACCAC...AGGGACATAT:W5(V549_D-1) Want to move edge Edge(680->681,w:10.0)(T:W-1(V680_D-1)->G:W-1(V681_D-1)) to (AGTCCACCAC...AGGGACATAT:W5(V549_D-1)->G:W-1(V681_D-1) adding edge: AGTCCACCAC...AGGGACATAT:W5(V549_D-1) to G:W-1(V681_D-1) removing edge Edge(680->681,w:10.0)(T:W-1(V680_D-1)->G:W-1(V681_D-1)) removing edge Edge(549->680,w:8.0)(AGTCCACCAC...AGGGACATAT:W5(V549_D-1)->T:W-1(V680_D-1)) Found potential edge: Edge(549->681,w:10.0) between AGTCCACCAC...AGGGACATAT:W5(V549_D-1) and G:W-1(V681_D-1) removing vertex G:W-1(V681_D-1) was concatenated into AGTCCACCAC...GGGACATATG:W6(V549_D-1) Want to move edge Edge(681->682,w:10.0)(G:W-1(V681_D-1)->G:W-1(V682_D-1)) to (AGTCCACCAC...GGGACATATG:W6(V549_D-1)->G:W-1(V682_D-1) adding edge: AGTCCACCAC...GGGACATATG:W6(V549_D-1) to G:W-1(V682_D-1) removing edge Edge(681->682,w:10.0)(G:W-1(V681_D-1)->G:W-1(V682_D-1)) removing edge Edge(549->681,w:10.0)(AGTCCACCAC...GGGACATATG:W6(V549_D-1)->G:W-1(V681_D-1)) Found potential edge: Edge(549->682,w:10.0) between AGTCCACCAC...GGGACATATG:W6(V549_D-1) and G:W-1(V682_D-1) removing vertex G:W-1(V682_D-1) was concatenated into AGTCCACCAC...GGACATATGG:W6(V549_D-1) Want to move edge Edge(682->683,w:10.0)(G:W-1(V682_D-1)->G:W-1(V683_D-1)) to (AGTCCACCAC...GGACATATGG:W6(V549_D-1)->G:W-1(V683_D-1) adding edge: AGTCCACCAC...GGACATATGG:W6(V549_D-1) to G:W-1(V683_D-1) removing edge Edge(682->683,w:10.0)(G:W-1(V682_D-1)->G:W-1(V683_D-1)) removing edge Edge(549->682,w:10.0)(AGTCCACCAC...GGACATATGG:W6(V549_D-1)->G:W-1(V682_D-1)) Found potential edge: Edge(549->683,w:10.0) between AGTCCACCAC...GGACATATGG:W6(V549_D-1) and G:W-1(V683_D-1) removing vertex G:W-1(V683_D-1) was concatenated into AGTCCACCAC...GACATATGGG:W6(V549_D-1) Want to move edge Edge(683->684,w:8.0)(G:W-1(V683_D-1)->A:W-1(V684_D-1)) to (AGTCCACCAC...GACATATGGG:W6(V549_D-1)->A:W-1(V684_D-1) adding edge: AGTCCACCAC...GACATATGGG:W6(V549_D-1) to A:W-1(V684_D-1) removing edge Edge(683->684,w:8.0)(G:W-1(V683_D-1)->A:W-1(V684_D-1)) removing edge Edge(549->683,w:10.0)(AGTCCACCAC...GACATATGGG:W6(V549_D-1)->G:W-1(V683_D-1)) Found potential edge: Edge(549->684,w:8.0) between AGTCCACCAC...GACATATGGG:W6(V549_D-1) and A:W-1(V684_D-1) removing vertex A:W-1(V684_D-1) was concatenated into AGTCCACCAC...ACATATGGGA:W6(V549_D-1) Want to move edge Edge(684->685,w:8.0)(A:W-1(V684_D-1)->G:W-1(V685_D-1)) to (AGTCCACCAC...ACATATGGGA:W6(V549_D-1)->G:W-1(V685_D-1) adding edge: AGTCCACCAC...ACATATGGGA:W6(V549_D-1) to G:W-1(V685_D-1) removing edge Edge(684->685,w:8.0)(A:W-1(V684_D-1)->G:W-1(V685_D-1)) removing edge Edge(549->684,w:8.0)(AGTCCACCAC...ACATATGGGA:W6(V549_D-1)->A:W-1(V684_D-1)) Found potential edge: Edge(549->685,w:8.0) between AGTCCACCAC...ACATATGGGA:W6(V549_D-1) and G:W-1(V685_D-1) removing vertex G:W-1(V685_D-1) was concatenated into AGTCCACCAC...CATATGGGAG:W6(V549_D-1) Want to move edge Edge(685->686,w:8.0)(G:W-1(V685_D-1)->C:W-1(V686_D-1)) to (AGTCCACCAC...CATATGGGAG:W6(V549_D-1)->C:W-1(V686_D-1) adding edge: AGTCCACCAC...CATATGGGAG:W6(V549_D-1) to C:W-1(V686_D-1) removing edge Edge(685->686,w:8.0)(G:W-1(V685_D-1)->C:W-1(V686_D-1)) removing edge Edge(549->685,w:8.0)(AGTCCACCAC...CATATGGGAG:W6(V549_D-1)->G:W-1(V685_D-1)) Found potential edge: Edge(549->686,w:8.0) between AGTCCACCAC...CATATGGGAG:W6(V549_D-1) and C:W-1(V686_D-1) removing vertex C:W-1(V686_D-1) was concatenated into AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) Want to move edge Edge(686->687,w:8.0)(C:W-1(V686_D-1)->T:W-1(V687_D-1)) to (AGTCCACCAC...ATATGGGAGC:W6(V549_D-1)->T:W-1(V687_D-1) adding edge: AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) to T:W-1(V687_D-1) removing edge Edge(686->687,w:8.0)(C:W-1(V686_D-1)->T:W-1(V687_D-1)) removing edge Edge(549->686,w:8.0)(AGTCCACCAC...ATATGGGAGC:W6(V549_D-1)->C:W-1(V686_D-1)) Found potential edge: Edge(549->687,w:8.0) between AGTCCACCAC...ATATGGGAGC:W6(V549_D-1) and T:W-1(V687_D-1) removing vertex T:W-1(V687_D-1) was concatenated into AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) Want to move edge Edge(687->688,w:8.0)(T:W-1(V687_D-1)->A:W-1(V688_D-1)) to (AGTCCACCAC...TATGGGAGCT:W6(V549_D-1)->A:W-1(V688_D-1) adding edge: AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) to A:W-1(V688_D-1) removing edge Edge(687->688,w:8.0)(T:W-1(V687_D-1)->A:W-1(V688_D-1)) removing edge Edge(549->687,w:8.0)(AGTCCACCAC...TATGGGAGCT:W6(V549_D-1)->T:W-1(V687_D-1)) Found potential edge: Edge(549->688,w:8.0) between AGTCCACCAC...TATGGGAGCT:W6(V549_D-1) and A:W-1(V688_D-1) removing vertex A:W-1(V688_D-1) was concatenated into AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) Want to move edge Edge(688->689,w:6.0)(A:W-1(V688_D-1)->C:W-1(V689_D-1)) to (AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1)->C:W-1(V689_D-1) adding edge: AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) to C:W-1(V689_D-1) removing edge Edge(688->689,w:6.0)(A:W-1(V688_D-1)->C:W-1(V689_D-1)) removing edge Edge(549->688,w:8.0)(AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1)->A:W-1(V688_D-1)) Found potential edge: Edge(549->689,w:6.0) between AGTCCACCAC...ATGGGAGCTA:W6(V549_D-1) and C:W-1(V689_D-1) removing vertex C:W-1(V689_D-1) was concatenated into AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) Want to move edge Edge(689->690,w:6.0)(C:W-1(V689_D-1)->A:W-1(V690_D-1)) to (AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1)->A:W-1(V690_D-1) adding edge: AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) to A:W-1(V690_D-1) removing edge Edge(689->690,w:6.0)(C:W-1(V689_D-1)->A:W-1(V690_D-1)) removing edge Edge(549->689,w:6.0)(AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1)->C:W-1(V689_D-1)) Found potential edge: Edge(549->690,w:6.0) between AGTCCACCAC...TGGGAGCTAC:W6(V549_D-1) and A:W-1(V690_D-1) removing vertex A:W-1(V690_D-1) was concatenated into AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) Want to move edge Edge(690->691,w:6.0)(A:W-1(V690_D-1)->T:W-1(V691_D-1)) to (AGTCCACCAC...GGGAGCTACA:W6(V549_D-1)->T:W-1(V691_D-1) adding edge: AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) to T:W-1(V691_D-1) removing edge Edge(690->691,w:6.0)(A:W-1(V690_D-1)->T:W-1(V691_D-1)) removing edge Edge(549->690,w:6.0)(AGTCCACCAC...GGGAGCTACA:W6(V549_D-1)->A:W-1(V690_D-1)) Found potential edge: Edge(549->691,w:6.0) between AGTCCACCAC...GGGAGCTACA:W6(V549_D-1) and T:W-1(V691_D-1) removing vertex T:W-1(V691_D-1) was concatenated into AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) Want to move edge Edge(691->692,w:4.0)(T:W-1(V691_D-1)->A:W-1(V692_D-1)) to (AGTCCACCAC...GGAGCTACAT:W6(V549_D-1)->A:W-1(V692_D-1) adding edge: AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) to A:W-1(V692_D-1) removing edge Edge(691->692,w:4.0)(T:W-1(V691_D-1)->A:W-1(V692_D-1)) removing edge Edge(549->691,w:6.0)(AGTCCACCAC...GGAGCTACAT:W6(V549_D-1)->T:W-1(V691_D-1)) Found potential edge: Edge(549->692,w:4.0) between AGTCCACCAC...GGAGCTACAT:W6(V549_D-1) and A:W-1(V692_D-1) removing vertex A:W-1(V692_D-1) was concatenated into AGTCCACCAC...GAGCTACATA:W6(V549_D-1) Want to move edge Edge(692->693,w:4.0)(A:W-1(V692_D-1)->G:W-1(V693_D-1)) to (AGTCCACCAC...GAGCTACATA:W6(V549_D-1)->G:W-1(V693_D-1) adding edge: AGTCCACCAC...GAGCTACATA:W6(V549_D-1) to G:W-1(V693_D-1) removing edge Edge(692->693,w:4.0)(A:W-1(V692_D-1)->G:W-1(V693_D-1)) removing edge Edge(549->692,w:4.0)(AGTCCACCAC...GAGCTACATA:W6(V549_D-1)->A:W-1(V692_D-1)) Found potential edge: Edge(549->693,w:4.0) between AGTCCACCAC...GAGCTACATA:W6(V549_D-1) and G:W-1(V693_D-1) removing vertex G:W-1(V693_D-1) was concatenated into AGTCCACCAC...AGCTACATAG:W6(V549_D-1) Want to move edge Edge(693->694,w:4.0)(G:W-1(V693_D-1)->C:W-1(V694_D-1)) to (AGTCCACCAC...AGCTACATAG:W6(V549_D-1)->C:W-1(V694_D-1) adding edge: AGTCCACCAC...AGCTACATAG:W6(V549_D-1) to C:W-1(V694_D-1) removing edge Edge(693->694,w:4.0)(G:W-1(V693_D-1)->C:W-1(V694_D-1)) removing edge Edge(549->693,w:4.0)(AGTCCACCAC...AGCTACATAG:W6(V549_D-1)->G:W-1(V693_D-1)) Found potential edge: Edge(549->694,w:4.0) between AGTCCACCAC...AGCTACATAG:W6(V549_D-1) and C:W-1(V694_D-1) removing vertex C:W-1(V694_D-1) was concatenated into AGTCCACCAC...GCTACATAGC:W6(V549_D-1) Want to move edge Edge(694->695,w:4.0)(C:W-1(V694_D-1)->C:W-1(V695_D-1)) to (AGTCCACCAC...GCTACATAGC:W6(V549_D-1)->C:W-1(V695_D-1) adding edge: AGTCCACCAC...GCTACATAGC:W6(V549_D-1) to C:W-1(V695_D-1) removing edge Edge(694->695,w:4.0)(C:W-1(V694_D-1)->C:W-1(V695_D-1)) removing edge Edge(549->694,w:4.0)(AGTCCACCAC...GCTACATAGC:W6(V549_D-1)->C:W-1(V694_D-1)) Found potential edge: Edge(549->695,w:4.0) between AGTCCACCAC...GCTACATAGC:W6(V549_D-1) and C:W-1(V695_D-1) removing vertex C:W-1(V695_D-1) was concatenated into AGTCCACCAC...CTACATAGCC:W6(V549_D-1) Want to move edge Edge(695->696,w:4.0)(C:W-1(V695_D-1)->A:W-1(V696_D-1)) to (AGTCCACCAC...CTACATAGCC:W6(V549_D-1)->A:W-1(V696_D-1) adding edge: AGTCCACCAC...CTACATAGCC:W6(V549_D-1) to A:W-1(V696_D-1) removing edge Edge(695->696,w:4.0)(C:W-1(V695_D-1)->A:W-1(V696_D-1)) removing edge Edge(549->695,w:4.0)(AGTCCACCAC...CTACATAGCC:W6(V549_D-1)->C:W-1(V695_D-1)) Found potential edge: Edge(549->696,w:4.0) between AGTCCACCAC...CTACATAGCC:W6(V549_D-1) and A:W-1(V696_D-1) removing vertex A:W-1(V696_D-1) was concatenated into AGTCCACCAC...TACATAGCCA:W6(V549_D-1) Want to move edge Edge(696->697,w:6.0)(A:W-1(V696_D-1)->G:W-1(V697_D-1)) to (AGTCCACCAC...TACATAGCCA:W6(V549_D-1)->G:W-1(V697_D-1) adding edge: AGTCCACCAC...TACATAGCCA:W6(V549_D-1) to G:W-1(V697_D-1) removing edge Edge(696->697,w:6.0)(A:W-1(V696_D-1)->G:W-1(V697_D-1)) removing edge Edge(549->696,w:4.0)(AGTCCACCAC...TACATAGCCA:W6(V549_D-1)->A:W-1(V696_D-1)) Found potential edge: Edge(549->697,w:6.0) between AGTCCACCAC...TACATAGCCA:W6(V549_D-1) and G:W-1(V697_D-1) removing vertex G:W-1(V697_D-1) was concatenated into AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) Want to move edge Edge(697->698,w:6.0)(G:W-1(V697_D-1)->C:W-1(V698_D-1)) to (AGTCCACCAC...ACATAGCCAG:W6(V549_D-1)->C:W-1(V698_D-1) adding edge: AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) to C:W-1(V698_D-1) removing edge Edge(697->698,w:6.0)(G:W-1(V697_D-1)->C:W-1(V698_D-1)) removing edge Edge(549->697,w:6.0)(AGTCCACCAC...ACATAGCCAG:W6(V549_D-1)->G:W-1(V697_D-1)) Found potential edge: Edge(549->698,w:6.0) between AGTCCACCAC...ACATAGCCAG:W6(V549_D-1) and C:W-1(V698_D-1) removing vertex C:W-1(V698_D-1) was concatenated into AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) Want to move edge Edge(698->699,w:6.0)(C:W-1(V698_D-1)->C:W-1(V699_D-1)) to (AGTCCACCAC...CATAGCCAGC:W6(V549_D-1)->C:W-1(V699_D-1) adding edge: AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) to C:W-1(V699_D-1) removing edge Edge(698->699,w:6.0)(C:W-1(V698_D-1)->C:W-1(V699_D-1)) removing edge Edge(549->698,w:6.0)(AGTCCACCAC...CATAGCCAGC:W6(V549_D-1)->C:W-1(V698_D-1)) Found potential edge: Edge(549->699,w:6.0) between AGTCCACCAC...CATAGCCAGC:W6(V549_D-1) and C:W-1(V699_D-1) removing vertex C:W-1(V699_D-1) was concatenated into AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) Want to move edge Edge(699->700,w:6.0)(C:W-1(V699_D-1)->C:W-1(V700_D-1)) to (AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1)->C:W-1(V700_D-1) adding edge: AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) to C:W-1(V700_D-1) removing edge Edge(699->700,w:6.0)(C:W-1(V699_D-1)->C:W-1(V700_D-1)) removing edge Edge(549->699,w:6.0)(AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1)->C:W-1(V699_D-1)) Found potential edge: Edge(549->700,w:6.0) between AGTCCACCAC...ATAGCCAGCC:W6(V549_D-1) and C:W-1(V700_D-1) removing vertex C:W-1(V700_D-1) was concatenated into AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) Want to move edge Edge(700->701,w:6.0)(C:W-1(V700_D-1)->C:W-1(V701_D-1)) to (AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1)->C:W-1(V701_D-1) adding edge: AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) to C:W-1(V701_D-1) removing edge Edge(700->701,w:6.0)(C:W-1(V700_D-1)->C:W-1(V701_D-1)) removing edge Edge(549->700,w:6.0)(AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1)->C:W-1(V700_D-1)) Found potential edge: Edge(549->701,w:6.0) between AGTCCACCAC...TAGCCAGCCC:W6(V549_D-1) and C:W-1(V701_D-1) removing vertex C:W-1(V701_D-1) was concatenated into AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) Want to move edge Edge(701->702,w:6.0)(C:W-1(V701_D-1)->G:W-1(V702_D-1)) to (AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1)->G:W-1(V702_D-1) adding edge: AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) to G:W-1(V702_D-1) removing edge Edge(701->702,w:6.0)(C:W-1(V701_D-1)->G:W-1(V702_D-1)) removing edge Edge(549->701,w:6.0)(AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1)->C:W-1(V701_D-1)) Found potential edge: Edge(549->702,w:6.0) between AGTCCACCAC...AGCCAGCCCC:W6(V549_D-1) and G:W-1(V702_D-1) removing vertex G:W-1(V702_D-1) was concatenated into AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) Want to move edge Edge(702->703,w:6.0)(G:W-1(V702_D-1)->T:W-1(V703_D-1)) to (AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1)->T:W-1(V703_D-1) adding edge: AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) to T:W-1(V703_D-1) removing edge Edge(702->703,w:6.0)(G:W-1(V702_D-1)->T:W-1(V703_D-1)) removing edge Edge(549->702,w:6.0)(AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1)->G:W-1(V702_D-1)) Found potential edge: Edge(549->703,w:6.0) between AGTCCACCAC...GCCAGCCCCG:W6(V549_D-1) and T:W-1(V703_D-1) removing vertex T:W-1(V703_D-1) was concatenated into AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) Want to move edge Edge(703->704,w:6.0)(T:W-1(V703_D-1)->G:W-1(V704_D-1)) to (AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1)->G:W-1(V704_D-1) adding edge: AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) to G:W-1(V704_D-1) removing edge Edge(703->704,w:6.0)(T:W-1(V703_D-1)->G:W-1(V704_D-1)) removing edge Edge(549->703,w:6.0)(AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1)->T:W-1(V703_D-1)) Found potential edge: Edge(549->704,w:6.0) between AGTCCACCAC...CCAGCCCCGT:W6(V549_D-1) and G:W-1(V704_D-1) removing vertex G:W-1(V704_D-1) was concatenated into AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) Want to move edge Edge(704->705,w:6.0)(G:W-1(V704_D-1)->G:W-1(V705_D-1)) to (AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1)->G:W-1(V705_D-1) adding edge: AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) to G:W-1(V705_D-1) removing edge Edge(704->705,w:6.0)(G:W-1(V704_D-1)->G:W-1(V705_D-1)) removing edge Edge(549->704,w:6.0)(AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1)->G:W-1(V704_D-1)) Found potential edge: Edge(549->705,w:6.0) between AGTCCACCAC...CAGCCCCGTG:W6(V549_D-1) and G:W-1(V705_D-1) removing vertex G:W-1(V705_D-1) was concatenated into AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) Want to move edge Edge(705->706,w:6.0)(G:W-1(V705_D-1)->A:W-1(V706_D-1)) to (AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1)->A:W-1(V706_D-1) adding edge: AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) to A:W-1(V706_D-1) removing edge Edge(705->706,w:6.0)(G:W-1(V705_D-1)->A:W-1(V706_D-1)) removing edge Edge(549->705,w:6.0)(AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1)->G:W-1(V705_D-1)) Found potential edge: Edge(549->706,w:6.0) between AGTCCACCAC...AGCCCCGTGG:W6(V549_D-1) and A:W-1(V706_D-1) removing vertex A:W-1(V706_D-1) was concatenated into AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) Want to move edge Edge(706->707,w:6.0)(A:W-1(V706_D-1)->G:W-1(V707_D-1)) to (AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1)->G:W-1(V707_D-1) adding edge: AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) to G:W-1(V707_D-1) removing edge Edge(706->707,w:6.0)(A:W-1(V706_D-1)->G:W-1(V707_D-1)) removing edge Edge(549->706,w:6.0)(AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1)->A:W-1(V706_D-1)) Found potential edge: Edge(549->707,w:6.0) between AGTCCACCAC...GCCCCGTGGA:W6(V549_D-1) and G:W-1(V707_D-1) removing vertex G:W-1(V707_D-1) was concatenated into AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) Want to move edge Edge(707->708,w:6.0)(G:W-1(V707_D-1)->G:W-1(V708_D-1)) to (AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1)->G:W-1(V708_D-1) adding edge: AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) to G:W-1(V708_D-1) removing edge Edge(707->708,w:6.0)(G:W-1(V707_D-1)->G:W-1(V708_D-1)) removing edge Edge(549->707,w:6.0)(AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1)->G:W-1(V707_D-1)) Found potential edge: Edge(549->708,w:6.0) between AGTCCACCAC...CCCCGTGGAG:W6(V549_D-1) and G:W-1(V708_D-1) removing vertex G:W-1(V708_D-1) was concatenated into AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) Want to move edge Edge(708->709,w:6.0)(G:W-1(V708_D-1)->G:W-1(V709_D-1)) to (AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1)->G:W-1(V709_D-1) adding edge: AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) to G:W-1(V709_D-1) removing edge Edge(708->709,w:6.0)(G:W-1(V708_D-1)->G:W-1(V709_D-1)) removing edge Edge(549->708,w:6.0)(AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1)->G:W-1(V708_D-1)) Found potential edge: Edge(549->709,w:6.0) between AGTCCACCAC...CCCGTGGAGG:W6(V549_D-1) and G:W-1(V709_D-1) removing vertex G:W-1(V709_D-1) was concatenated into AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) Want to move edge Edge(709->710,w:4.0)(G:W-1(V709_D-1)->A:W-1(V710_D-1)) to (AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1)->A:W-1(V710_D-1) adding edge: AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) to A:W-1(V710_D-1) removing edge Edge(709->710,w:4.0)(G:W-1(V709_D-1)->A:W-1(V710_D-1)) removing edge Edge(549->709,w:6.0)(AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1)->G:W-1(V709_D-1)) Found potential edge: Edge(549->710,w:4.0) between AGTCCACCAC...CCGTGGAGGG:W6(V549_D-1) and A:W-1(V710_D-1) removing vertex A:W-1(V710_D-1) was concatenated into AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) Want to move edge Edge(710->711,w:4.0)(A:W-1(V710_D-1)->G:W-1(V711_D-1)) to (AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1)->G:W-1(V711_D-1) adding edge: AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) to G:W-1(V711_D-1) removing edge Edge(710->711,w:4.0)(A:W-1(V710_D-1)->G:W-1(V711_D-1)) removing edge Edge(549->710,w:4.0)(AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1)->A:W-1(V710_D-1)) Found potential edge: Edge(549->711,w:4.0) between AGTCCACCAC...CGTGGAGGGA:W6(V549_D-1) and G:W-1(V711_D-1) removing vertex G:W-1(V711_D-1) was concatenated into AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) Want to move edge Edge(711->712,w:4.0)(G:W-1(V711_D-1)->C:W-1(V712_D-1)) to (AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1)->C:W-1(V712_D-1) adding edge: AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) to C:W-1(V712_D-1) removing edge Edge(711->712,w:4.0)(G:W-1(V711_D-1)->C:W-1(V712_D-1)) removing edge Edge(549->711,w:4.0)(AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1)->G:W-1(V711_D-1)) Found potential edge: Edge(549->712,w:4.0) between AGTCCACCAC...GTGGAGGGAG:W6(V549_D-1) and C:W-1(V712_D-1) removing vertex C:W-1(V712_D-1) was concatenated into AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) Want to move edge Edge(712->713,w:4.0)(C:W-1(V712_D-1)->C:W-1(V713_D-1)) to (AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1)->C:W-1(V713_D-1) adding edge: AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) to C:W-1(V713_D-1) removing edge Edge(712->713,w:4.0)(C:W-1(V712_D-1)->C:W-1(V713_D-1)) removing edge Edge(549->712,w:4.0)(AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1)->C:W-1(V712_D-1)) Found potential edge: Edge(549->713,w:4.0) between AGTCCACCAC...TGGAGGGAGC:W6(V549_D-1) and C:W-1(V713_D-1) removing vertex C:W-1(V713_D-1) was concatenated into AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) Want to move edge Edge(713->714,w:4.0)(C:W-1(V713_D-1)->A:W-1(V714_D-1)) to (AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1)->A:W-1(V714_D-1) adding edge: AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) to A:W-1(V714_D-1) removing edge Edge(713->714,w:4.0)(C:W-1(V713_D-1)->A:W-1(V714_D-1)) removing edge Edge(549->713,w:4.0)(AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1)->C:W-1(V713_D-1)) Found potential edge: Edge(549->714,w:4.0) between AGTCCACCAC...GGAGGGAGCC:W6(V549_D-1) and A:W-1(V714_D-1) removing vertex A:W-1(V714_D-1) was concatenated into AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) Want to move edge Edge(714->715,w:4.0)(A:W-1(V714_D-1)->C:W-1(V715_D-1)) to (AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1)->C:W-1(V715_D-1) adding edge: AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) to C:W-1(V715_D-1) removing edge Edge(714->715,w:4.0)(A:W-1(V714_D-1)->C:W-1(V715_D-1)) removing edge Edge(549->714,w:4.0)(AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1)->A:W-1(V714_D-1)) Found potential edge: Edge(549->715,w:4.0) between AGTCCACCAC...GAGGGAGCCA:W6(V549_D-1) and C:W-1(V715_D-1) removing vertex C:W-1(V715_D-1) was concatenated into AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) Want to move edge Edge(715->716,w:4.0)(C:W-1(V715_D-1)->C:W-1(V716_D-1)) to (AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1)->C:W-1(V716_D-1) adding edge: AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) to C:W-1(V716_D-1) removing edge Edge(715->716,w:4.0)(C:W-1(V715_D-1)->C:W-1(V716_D-1)) removing edge Edge(549->715,w:4.0)(AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1)->C:W-1(V715_D-1)) Found potential edge: Edge(549->716,w:4.0) between AGTCCACCAC...AGGGAGCCAC:W6(V549_D-1) and C:W-1(V716_D-1) removing vertex C:W-1(V716_D-1) was concatenated into AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) Want to move edge Edge(716->717,w:4.0)(C:W-1(V716_D-1)->A:W-1(V717_D-1)) to (AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)->A:W-1(V717_D-1) adding edge: AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) to A:W-1(V717_D-1) removing edge Edge(716->717,w:4.0)(C:W-1(V716_D-1)->A:W-1(V717_D-1)) removing edge Edge(549->716,w:4.0)(AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)->C:W-1(V716_D-1)) Found potential edge: Edge(717->718,w:6.0) between A:W-1(V717_D-1) and G:W-1(V718_D-1) removing vertex G:W-1(V718_D-1) was concatenated into AG:W6(V717_D-1) Want to move edge Edge(718->719,w:6.0)(G:W-1(V718_D-1)->C:W-1(V719_D-1)) to (AG:W6(V717_D-1)->C:W-1(V719_D-1) adding edge: AG:W6(V717_D-1) to C:W-1(V719_D-1) removing edge Edge(718->719,w:6.0)(G:W-1(V718_D-1)->C:W-1(V719_D-1)) removing edge Edge(717->718,w:6.0)(AG:W6(V717_D-1)->G:W-1(V718_D-1)) Found potential edge: Edge(717->719,w:6.0) between AG:W6(V717_D-1) and C:W-1(V719_D-1) removing vertex C:W-1(V719_D-1) was concatenated into AGC:W6(V717_D-1) Want to move edge Edge(719->720,w:6.0)(C:W-1(V719_D-1)->C:W-1(V720_D-1)) to (AGC:W6(V717_D-1)->C:W-1(V720_D-1) adding edge: AGC:W6(V717_D-1) to C:W-1(V720_D-1) removing edge Edge(719->720,w:6.0)(C:W-1(V719_D-1)->C:W-1(V720_D-1)) removing edge Edge(717->719,w:6.0)(AGC:W6(V717_D-1)->C:W-1(V719_D-1)) Found potential edge: Edge(717->720,w:6.0) between AGC:W6(V717_D-1) and C:W-1(V720_D-1) removing vertex C:W-1(V720_D-1) was concatenated into AGCC:W6(V717_D-1) Want to move edge Edge(720->721,w:6.0)(C:W-1(V720_D-1)->A:W-1(V721_D-1)) to (AGCC:W6(V717_D-1)->A:W-1(V721_D-1) adding edge: AGCC:W6(V717_D-1) to A:W-1(V721_D-1) removing edge Edge(720->721,w:6.0)(C:W-1(V720_D-1)->A:W-1(V721_D-1)) removing edge Edge(717->720,w:6.0)(AGCC:W6(V717_D-1)->C:W-1(V720_D-1)) Found potential edge: Edge(717->721,w:6.0) between AGCC:W6(V717_D-1) and A:W-1(V721_D-1) removing vertex A:W-1(V721_D-1) was concatenated into AGCCA:W6(V717_D-1) Want to move edge Edge(721->722,w:6.0)(A:W-1(V721_D-1)->C:W-1(V722_D-1)) to (AGCCA:W6(V717_D-1)->C:W-1(V722_D-1) adding edge: AGCCA:W6(V717_D-1) to C:W-1(V722_D-1) removing edge Edge(721->722,w:6.0)(A:W-1(V721_D-1)->C:W-1(V722_D-1)) removing edge Edge(717->721,w:6.0)(AGCCA:W6(V717_D-1)->A:W-1(V721_D-1)) Found potential edge: Edge(717->722,w:6.0) between AGCCA:W6(V717_D-1) and C:W-1(V722_D-1) removing vertex C:W-1(V722_D-1) was concatenated into AGCCAC:W6(V717_D-1) Want to move edge Edge(722->723,w:6.0)(C:W-1(V722_D-1)->A:W-1(V723_D-1)) to (AGCCAC:W6(V717_D-1)->A:W-1(V723_D-1) adding edge: AGCCAC:W6(V717_D-1) to A:W-1(V723_D-1) removing edge Edge(722->723,w:6.0)(C:W-1(V722_D-1)->A:W-1(V723_D-1)) removing edge Edge(717->722,w:6.0)(AGCCAC:W6(V717_D-1)->C:W-1(V722_D-1)) Found potential edge: Edge(717->723,w:6.0) between AGCCAC:W6(V717_D-1) and A:W-1(V723_D-1) removing vertex A:W-1(V723_D-1) was concatenated into AGCCACA:W6(V717_D-1) Want to move edge Edge(723->724,w:6.0)(A:W-1(V723_D-1)->G:W-1(V724_D-1)) to (AGCCACA:W6(V717_D-1)->G:W-1(V724_D-1) adding edge: AGCCACA:W6(V717_D-1) to G:W-1(V724_D-1) removing edge Edge(723->724,w:6.0)(A:W-1(V723_D-1)->G:W-1(V724_D-1)) removing edge Edge(717->723,w:6.0)(AGCCACA:W6(V717_D-1)->A:W-1(V723_D-1)) Found potential edge: Edge(717->724,w:6.0) between AGCCACA:W6(V717_D-1) and G:W-1(V724_D-1) removing vertex G:W-1(V724_D-1) was concatenated into AGCCACAG:W6(V717_D-1) Want to move edge Edge(724->725,w:6.0)(G:W-1(V724_D-1)->G:W-1(V725_D-1)) to (AGCCACAG:W6(V717_D-1)->G:W-1(V725_D-1) adding edge: AGCCACAG:W6(V717_D-1) to G:W-1(V725_D-1) removing edge Edge(724->725,w:6.0)(G:W-1(V724_D-1)->G:W-1(V725_D-1)) removing edge Edge(717->724,w:6.0)(AGCCACAG:W6(V717_D-1)->G:W-1(V724_D-1)) Found potential edge: Edge(717->725,w:6.0) between AGCCACAG:W6(V717_D-1) and G:W-1(V725_D-1) removing vertex G:W-1(V725_D-1) was concatenated into AGCCACAGG:W6(V717_D-1) Want to move edge Edge(725->726,w:6.0)(G:W-1(V725_D-1)->T:W-1(V726_D-1)) to (AGCCACAGG:W6(V717_D-1)->T:W-1(V726_D-1) adding edge: AGCCACAGG:W6(V717_D-1) to T:W-1(V726_D-1) removing edge Edge(725->726,w:6.0)(G:W-1(V725_D-1)->T:W-1(V726_D-1)) removing edge Edge(717->725,w:6.0)(AGCCACAGG:W6(V717_D-1)->G:W-1(V725_D-1)) Found potential edge: Edge(717->726,w:6.0) between AGCCACAGG:W6(V717_D-1) and T:W-1(V726_D-1) removing vertex T:W-1(V726_D-1) was concatenated into AGCCACAGGT:W6(V717_D-1) Want to move edge Edge(726->727,w:6.0)(T:W-1(V726_D-1)->A:W-1(V727_D-1)) to (AGCCACAGGT:W6(V717_D-1)->A:W-1(V727_D-1) adding edge: AGCCACAGGT:W6(V717_D-1) to A:W-1(V727_D-1) removing edge Edge(726->727,w:6.0)(T:W-1(V726_D-1)->A:W-1(V727_D-1)) removing edge Edge(717->726,w:6.0)(AGCCACAGGT:W6(V717_D-1)->T:W-1(V726_D-1)) Found potential edge: Edge(717->727,w:6.0) between AGCCACAGGT:W6(V717_D-1) and A:W-1(V727_D-1) removing vertex A:W-1(V727_D-1) was concatenated into AGCCACAGGTA:W6(V717_D-1) Want to move edge Edge(727->728,w:6.0)(A:W-1(V727_D-1)->C:W-1(V728_D-1)) to (AGCCACAGGTA:W6(V717_D-1)->C:W-1(V728_D-1) adding edge: AGCCACAGGTA:W6(V717_D-1) to C:W-1(V728_D-1) removing edge Edge(727->728,w:6.0)(A:W-1(V727_D-1)->C:W-1(V728_D-1)) removing edge Edge(717->727,w:6.0)(AGCCACAGGTA:W6(V717_D-1)->A:W-1(V727_D-1)) Found potential edge: Edge(717->728,w:6.0) between AGCCACAGGTA:W6(V717_D-1) and C:W-1(V728_D-1) removing vertex C:W-1(V728_D-1) was concatenated into AGCCACAGGTAC:W6(V717_D-1) Want to move edge Edge(728->729,w:6.0)(C:W-1(V728_D-1)->C:W-1(V729_D-1)) to (AGCCACAGGTAC:W6(V717_D-1)->C:W-1(V729_D-1) adding edge: AGCCACAGGTAC:W6(V717_D-1) to C:W-1(V729_D-1) removing edge Edge(728->729,w:6.0)(C:W-1(V728_D-1)->C:W-1(V729_D-1)) removing edge Edge(717->728,w:6.0)(AGCCACAGGTAC:W6(V717_D-1)->C:W-1(V728_D-1)) Found potential edge: Edge(717->729,w:6.0) between AGCCACAGGTAC:W6(V717_D-1) and C:W-1(V729_D-1) removing vertex C:W-1(V729_D-1) was concatenated into AGCCACAGGTACC:W6(V717_D-1) Want to move edge Edge(729->730,w:6.0)(C:W-1(V729_D-1)->T:W-1(V730_D-1)) to (AGCCACAGGTACC:W6(V717_D-1)->T:W-1(V730_D-1) adding edge: AGCCACAGGTACC:W6(V717_D-1) to T:W-1(V730_D-1) removing edge Edge(729->730,w:6.0)(C:W-1(V729_D-1)->T:W-1(V730_D-1)) removing edge Edge(717->729,w:6.0)(AGCCACAGGTACC:W6(V717_D-1)->C:W-1(V729_D-1)) Found potential edge: Edge(717->730,w:6.0) between AGCCACAGGTACC:W6(V717_D-1) and T:W-1(V730_D-1) removing vertex T:W-1(V730_D-1) was concatenated into AGCCACAGGTACCT:W6(V717_D-1) Want to move edge Edge(730->731,w:6.0)(T:W-1(V730_D-1)->G:W-1(V731_D-1)) to (AGCCACAGGTACCT:W6(V717_D-1)->G:W-1(V731_D-1) adding edge: AGCCACAGGTACCT:W6(V717_D-1) to G:W-1(V731_D-1) removing edge Edge(730->731,w:6.0)(T:W-1(V730_D-1)->G:W-1(V731_D-1)) removing edge Edge(717->730,w:6.0)(AGCCACAGGTACCT:W6(V717_D-1)->T:W-1(V730_D-1)) Found potential edge: Edge(717->731,w:6.0) between AGCCACAGGTACCT:W6(V717_D-1) and G:W-1(V731_D-1) removing vertex G:W-1(V731_D-1) was concatenated into AGCCACAGGTACCTG:W6(V717_D-1) Want to move edge Edge(731->732,w:6.0)(G:W-1(V731_D-1)->A:W-1(V732_D-1)) to (AGCCACAGGTACCTG:W6(V717_D-1)->A:W-1(V732_D-1) adding edge: AGCCACAGGTACCTG:W6(V717_D-1) to A:W-1(V732_D-1) removing edge Edge(731->732,w:6.0)(G:W-1(V731_D-1)->A:W-1(V732_D-1)) removing edge Edge(717->731,w:6.0)(AGCCACAGGTACCTG:W6(V717_D-1)->G:W-1(V731_D-1)) Found potential edge: Edge(717->732,w:6.0) between AGCCACAGGTACCTG:W6(V717_D-1) and A:W-1(V732_D-1) removing vertex A:W-1(V732_D-1) was concatenated into AGCCACAGGTACCTGA:W6(V717_D-1) Want to move edge Edge(732->733,w:6.0)(A:W-1(V732_D-1)->T:W-1(V733_D-1)) to (AGCCACAGGTACCTGA:W6(V717_D-1)->T:W-1(V733_D-1) adding edge: AGCCACAGGTACCTGA:W6(V717_D-1) to T:W-1(V733_D-1) removing edge Edge(732->733,w:6.0)(A:W-1(V732_D-1)->T:W-1(V733_D-1)) removing edge Edge(717->732,w:6.0)(AGCCACAGGTACCTGA:W6(V717_D-1)->A:W-1(V732_D-1)) Found potential edge: Edge(717->733,w:6.0) between AGCCACAGGTACCTGA:W6(V717_D-1) and T:W-1(V733_D-1) removing vertex T:W-1(V733_D-1) was concatenated into AGCCACAGGTACCTGAT:W6(V717_D-1) Want to move edge Edge(733->734,w:6.0)(T:W-1(V733_D-1)->G:W-1(V734_D-1)) to (AGCCACAGGTACCTGAT:W6(V717_D-1)->G:W-1(V734_D-1) adding edge: AGCCACAGGTACCTGAT:W6(V717_D-1) to G:W-1(V734_D-1) removing edge Edge(733->734,w:6.0)(T:W-1(V733_D-1)->G:W-1(V734_D-1)) removing edge Edge(717->733,w:6.0)(AGCCACAGGTACCTGAT:W6(V717_D-1)->T:W-1(V733_D-1)) Found potential edge: Edge(717->734,w:6.0) between AGCCACAGGTACCTGAT:W6(V717_D-1) and G:W-1(V734_D-1) removing vertex G:W-1(V734_D-1) was concatenated into AGCCACAGGTACCTGATG:W6(V717_D-1) Want to move edge Edge(734->735,w:6.0)(G:W-1(V734_D-1)->G:W-1(V735_D-1)) to (AGCCACAGGTACCTGATG:W6(V717_D-1)->G:W-1(V735_D-1) adding edge: AGCCACAGGTACCTGATG:W6(V717_D-1) to G:W-1(V735_D-1) removing edge Edge(734->735,w:6.0)(G:W-1(V734_D-1)->G:W-1(V735_D-1)) removing edge Edge(717->734,w:6.0)(AGCCACAGGTACCTGATG:W6(V717_D-1)->G:W-1(V734_D-1)) Found potential edge: Edge(717->735,w:6.0) between AGCCACAGGTACCTGATG:W6(V717_D-1) and G:W-1(V735_D-1) removing vertex G:W-1(V735_D-1) was concatenated into AGCCACAGGTACCTGATGG:W6(V717_D-1) Want to move edge Edge(735->736,w:6.0)(G:W-1(V735_D-1)->A:W-1(V736_D-1)) to (AGCCACAGGTACCTGATGG:W6(V717_D-1)->A:W-1(V736_D-1) adding edge: AGCCACAGGTACCTGATGG:W6(V717_D-1) to A:W-1(V736_D-1) removing edge Edge(735->736,w:6.0)(G:W-1(V735_D-1)->A:W-1(V736_D-1)) removing edge Edge(717->735,w:6.0)(AGCCACAGGTACCTGATGG:W6(V717_D-1)->G:W-1(V735_D-1)) Found potential edge: Edge(717->736,w:6.0) between AGCCACAGGTACCTGATGG:W6(V717_D-1) and A:W-1(V736_D-1) removing vertex A:W-1(V736_D-1) was concatenated into AGCCACAGGTACCTGATGGA:W6(V717_D-1) Want to move edge Edge(736->737,w:6.0)(A:W-1(V736_D-1)->A:W-1(V737_D-1)) to (AGCCACAGGTACCTGATGGA:W6(V717_D-1)->A:W-1(V737_D-1) adding edge: AGCCACAGGTACCTGATGGA:W6(V717_D-1) to A:W-1(V737_D-1) removing edge Edge(736->737,w:6.0)(A:W-1(V736_D-1)->A:W-1(V737_D-1)) removing edge Edge(717->736,w:6.0)(AGCCACAGGTACCTGATGGA:W6(V717_D-1)->A:W-1(V736_D-1)) Found potential edge: Edge(717->737,w:6.0) between AGCCACAGGTACCTGATGGA:W6(V717_D-1) and A:W-1(V737_D-1) removing vertex A:W-1(V737_D-1) was concatenated into AGCCACAGGTACCTGATGGAA:W6(V717_D-1) Want to move edge Edge(737->738,w:6.0)(A:W-1(V737_D-1)->A:W-1(V738_D-1)) to (AGCCACAGGTACCTGATGGAA:W6(V717_D-1)->A:W-1(V738_D-1) adding edge: AGCCACAGGTACCTGATGGAA:W6(V717_D-1) to A:W-1(V738_D-1) removing edge Edge(737->738,w:6.0)(A:W-1(V737_D-1)->A:W-1(V738_D-1)) removing edge Edge(717->737,w:6.0)(AGCCACAGGTACCTGATGGAA:W6(V717_D-1)->A:W-1(V737_D-1)) Found potential edge: Edge(717->738,w:6.0) between AGCCACAGGTACCTGATGGAA:W6(V717_D-1) and A:W-1(V738_D-1) removing vertex A:W-1(V738_D-1) was concatenated into AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) Want to move edge Edge(738->739,w:6.0)(A:W-1(V738_D-1)->T:W-1(V739_D-1)) to (AGCCACAGGTACCTGATGGAAA:W6(V717_D-1)->T:W-1(V739_D-1) adding edge: AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) to T:W-1(V739_D-1) removing edge Edge(738->739,w:6.0)(A:W-1(V738_D-1)->T:W-1(V739_D-1)) removing edge Edge(717->738,w:6.0)(AGCCACAGGTACCTGATGGAAA:W6(V717_D-1)->A:W-1(V738_D-1)) Found potential edge: Edge(717->739,w:6.0) between AGCCACAGGTACCTGATGGAAA:W6(V717_D-1) and T:W-1(V739_D-1) removing vertex T:W-1(V739_D-1) was concatenated into AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) Want to move edge Edge(739->740,w:6.0)(T:W-1(V739_D-1)->G:W-1(V740_D-1)) to (AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1)->G:W-1(V740_D-1) adding edge: AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) to G:W-1(V740_D-1) removing edge Edge(739->740,w:6.0)(T:W-1(V739_D-1)->G:W-1(V740_D-1)) removing edge Edge(717->739,w:6.0)(AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1)->T:W-1(V739_D-1)) Found potential edge: Edge(717->740,w:6.0) between AGCCACAGGTACCTGATGGAAAT:W6(V717_D-1) and G:W-1(V740_D-1) removing vertex G:W-1(V740_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) Want to move edge Edge(740->741,w:6.0)(G:W-1(V740_D-1)->C:W-1(V741_D-1)) to (AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1)->C:W-1(V741_D-1) adding edge: AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) to C:W-1(V741_D-1) removing edge Edge(740->741,w:6.0)(G:W-1(V740_D-1)->C:W-1(V741_D-1)) removing edge Edge(717->740,w:6.0)(AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1)->G:W-1(V740_D-1)) Found potential edge: Edge(717->741,w:6.0) between AGCCACAGGTACCTGATGGAAATG:W6(V717_D-1) and C:W-1(V741_D-1) removing vertex C:W-1(V741_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) Want to move edge Edge(741->742,w:6.0)(C:W-1(V741_D-1)->C:W-1(V742_D-1)) to (AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1)->C:W-1(V742_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) to C:W-1(V742_D-1) removing edge Edge(741->742,w:6.0)(C:W-1(V741_D-1)->C:W-1(V742_D-1)) removing edge Edge(717->741,w:6.0)(AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1)->C:W-1(V741_D-1)) Found potential edge: Edge(717->742,w:6.0) between AGCCACAGGTACCTGATGGAAATGC:W6(V717_D-1) and C:W-1(V742_D-1) removing vertex C:W-1(V742_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) Want to move edge Edge(742->743,w:4.0)(C:W-1(V742_D-1)->G:W-1(V743_D-1)) to (AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1)->G:W-1(V743_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) to G:W-1(V743_D-1) removing edge Edge(742->743,w:4.0)(C:W-1(V742_D-1)->G:W-1(V743_D-1)) removing edge Edge(717->742,w:6.0)(AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1)->C:W-1(V742_D-1)) Found potential edge: Edge(717->743,w:4.0) between AGCCACAGGTACCTGATGGAAATGCC:W6(V717_D-1) and G:W-1(V743_D-1) removing vertex G:W-1(V743_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) Want to move edge Edge(743->744,w:4.0)(G:W-1(V743_D-1)->G:W-1(V744_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1)->G:W-1(V744_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) to G:W-1(V744_D-1) removing edge Edge(743->744,w:4.0)(G:W-1(V743_D-1)->G:W-1(V744_D-1)) removing edge Edge(717->743,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1)->G:W-1(V743_D-1)) Found potential edge: Edge(717->744,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCG:W6(V717_D-1) and G:W-1(V744_D-1) removing vertex G:W-1(V744_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) Want to move edge Edge(744->745,w:4.0)(G:W-1(V744_D-1)->C:W-1(V745_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1)->C:W-1(V745_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) to C:W-1(V745_D-1) removing edge Edge(744->745,w:4.0)(G:W-1(V744_D-1)->C:W-1(V745_D-1)) removing edge Edge(717->744,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1)->G:W-1(V744_D-1)) Found potential edge: Edge(717->745,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGG:W6(V717_D-1) and C:W-1(V745_D-1) removing vertex C:W-1(V745_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) Want to move edge Edge(745->746,w:4.0)(C:W-1(V745_D-1)->T:W-1(V746_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1)->T:W-1(V746_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) to T:W-1(V746_D-1) removing edge Edge(745->746,w:4.0)(C:W-1(V745_D-1)->T:W-1(V746_D-1)) removing edge Edge(717->745,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1)->C:W-1(V745_D-1)) Found potential edge: Edge(717->746,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGGC:W6(V717_D-1) and T:W-1(V746_D-1) removing vertex T:W-1(V746_D-1) was concatenated into AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) Want to move edge Edge(746->747,w:4.0)(T:W-1(V746_D-1)->C:W-1(V747_D-1)) to (AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1)->C:W-1(V747_D-1) adding edge: AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) to C:W-1(V747_D-1) removing edge Edge(746->747,w:4.0)(T:W-1(V746_D-1)->C:W-1(V747_D-1)) removing edge Edge(717->746,w:4.0)(AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1)->T:W-1(V746_D-1)) Found potential edge: Edge(717->747,w:4.0) between AGCCACAGGTACCTGATGGAAATGCCGGCT:W6(V717_D-1) and C:W-1(V747_D-1) removing vertex C:W-1(V747_D-1) was concatenated into AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) Want to move edge Edge(747->748,w:4.0)(C:W-1(V747_D-1)->A:W-1(V748_D-1)) to (AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1)->A:W-1(V748_D-1) adding edge: AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) to A:W-1(V748_D-1) removing edge Edge(747->748,w:4.0)(C:W-1(V747_D-1)->A:W-1(V748_D-1)) removing edge Edge(717->747,w:4.0)(AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1)->C:W-1(V747_D-1)) Found potential edge: Edge(717->748,w:4.0) between AGCCACAGGT...ATGCCGGCTC:W6(V717_D-1) and A:W-1(V748_D-1) removing vertex A:W-1(V748_D-1) was concatenated into AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) Want to move edge Edge(748->749,w:2.0)(A:W-1(V748_D-1)->C:W-1(V749_D-1)) to (AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1)->C:W-1(V749_D-1) adding edge: AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) to C:W-1(V749_D-1) removing edge Edge(748->749,w:2.0)(A:W-1(V748_D-1)->C:W-1(V749_D-1)) removing edge Edge(717->748,w:4.0)(AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1)->A:W-1(V748_D-1)) Found potential edge: Edge(717->749,w:2.0) between AGCCACAGGT...TGCCGGCTCA:W6(V717_D-1) and C:W-1(V749_D-1) removing vertex C:W-1(V749_D-1) was concatenated into AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) Want to move edge Edge(749->750,w:2.0)(C:W-1(V749_D-1)->T:W-1(V750_D-1)) to (AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1)->T:W-1(V750_D-1) adding edge: AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) to T:W-1(V750_D-1) removing edge Edge(749->750,w:2.0)(C:W-1(V749_D-1)->T:W-1(V750_D-1)) removing edge Edge(717->749,w:2.0)(AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1)->C:W-1(V749_D-1)) Found potential edge: Edge(717->750,w:2.0) between AGCCACAGGT...GCCGGCTCAC:W6(V717_D-1) and T:W-1(V750_D-1) removing vertex T:W-1(V750_D-1) was concatenated into AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) Want to move edge Edge(750->751,w:2.0)(T:W-1(V750_D-1)->T:W-1(V751_D-1)) to (AGCCACAGGT...CCGGCTCACT:W5(V717_D-1)->T:W-1(V751_D-1) adding edge: AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) to T:W-1(V751_D-1) removing edge Edge(750->751,w:2.0)(T:W-1(V750_D-1)->T:W-1(V751_D-1)) removing edge Edge(717->750,w:2.0)(AGCCACAGGT...CCGGCTCACT:W5(V717_D-1)->T:W-1(V750_D-1)) Found potential edge: Edge(717->751,w:2.0) between AGCCACAGGT...CCGGCTCACT:W5(V717_D-1) and T:W-1(V751_D-1) removing vertex T:W-1(V751_D-1) was concatenated into AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) Want to move edge Edge(751->752,w:2.0)(T:W-1(V751_D-1)->C:W-1(V752_D-1)) to (AGCCACAGGT...CGGCTCACTT:W5(V717_D-1)->C:W-1(V752_D-1) adding edge: AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) to C:W-1(V752_D-1) removing edge Edge(751->752,w:2.0)(T:W-1(V751_D-1)->C:W-1(V752_D-1)) removing edge Edge(717->751,w:2.0)(AGCCACAGGT...CGGCTCACTT:W5(V717_D-1)->T:W-1(V751_D-1)) Found potential edge: Edge(717->752,w:2.0) between AGCCACAGGT...CGGCTCACTT:W5(V717_D-1) and C:W-1(V752_D-1) removing vertex C:W-1(V752_D-1) was concatenated into AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) Want to move edge Edge(752->753,w:2.0)(C:W-1(V752_D-1)->C:W-1(V753_D-1)) to (AGCCACAGGT...GGCTCACTTC:W5(V717_D-1)->C:W-1(V753_D-1) adding edge: AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) to C:W-1(V753_D-1) removing edge Edge(752->753,w:2.0)(C:W-1(V752_D-1)->C:W-1(V753_D-1)) removing edge Edge(717->752,w:2.0)(AGCCACAGGT...GGCTCACTTC:W5(V717_D-1)->C:W-1(V752_D-1)) Found potential edge: Edge(717->753,w:2.0) between AGCCACAGGT...GGCTCACTTC:W5(V717_D-1) and C:W-1(V753_D-1) removing vertex C:W-1(V753_D-1) was concatenated into AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) Want to move edge Edge(753->754,w:2.0)(C:W-1(V753_D-1)->T:W-1(V754_D-1)) to (AGCCACAGGT...GCTCACTTCC:W5(V717_D-1)->T:W-1(V754_D-1) adding edge: AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) to T:W-1(V754_D-1) removing edge Edge(753->754,w:2.0)(C:W-1(V753_D-1)->T:W-1(V754_D-1)) removing edge Edge(717->753,w:2.0)(AGCCACAGGT...GCTCACTTCC:W5(V717_D-1)->C:W-1(V753_D-1)) Found potential edge: Edge(717->754,w:2.0) between AGCCACAGGT...GCTCACTTCC:W5(V717_D-1) and T:W-1(V754_D-1) removing vertex T:W-1(V754_D-1) was concatenated into AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) Want to move edge Edge(754->755,w:2.0)(T:W-1(V754_D-1)->G:W-1(V755_D-1)) to (AGCCACAGGT...CTCACTTCCT:W5(V717_D-1)->G:W-1(V755_D-1) adding edge: AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) to G:W-1(V755_D-1) removing edge Edge(754->755,w:2.0)(T:W-1(V754_D-1)->G:W-1(V755_D-1)) removing edge Edge(717->754,w:2.0)(AGCCACAGGT...CTCACTTCCT:W5(V717_D-1)->T:W-1(V754_D-1)) Found potential edge: Edge(717->755,w:2.0) between AGCCACAGGT...CTCACTTCCT:W5(V717_D-1) and G:W-1(V755_D-1) removing vertex G:W-1(V755_D-1) was concatenated into AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) Want to move edge Edge(755->756,w:2.0)(G:W-1(V755_D-1)->T:W-1(V756_D-1)) to (AGCCACAGGT...TCACTTCCTG:W5(V717_D-1)->T:W-1(V756_D-1) adding edge: AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) to T:W-1(V756_D-1) removing edge Edge(755->756,w:2.0)(G:W-1(V755_D-1)->T:W-1(V756_D-1)) removing edge Edge(717->755,w:2.0)(AGCCACAGGT...TCACTTCCTG:W5(V717_D-1)->G:W-1(V755_D-1)) Found potential edge: Edge(717->756,w:2.0) between AGCCACAGGT...TCACTTCCTG:W5(V717_D-1) and T:W-1(V756_D-1) removing vertex T:W-1(V756_D-1) was concatenated into AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) Want to move edge Edge(756->757,w:2.0)(T:W-1(V756_D-1)->G:W-1(V757_D-1)) to (AGCCACAGGT...CACTTCCTGT:W5(V717_D-1)->G:W-1(V757_D-1) adding edge: AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) to G:W-1(V757_D-1) removing edge Edge(756->757,w:2.0)(T:W-1(V756_D-1)->G:W-1(V757_D-1)) removing edge Edge(717->756,w:2.0)(AGCCACAGGT...CACTTCCTGT:W5(V717_D-1)->T:W-1(V756_D-1)) Found potential edge: Edge(717->757,w:2.0) between AGCCACAGGT...CACTTCCTGT:W5(V717_D-1) and G:W-1(V757_D-1) removing vertex G:W-1(V757_D-1) was concatenated into AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) Want to move edge Edge(757->758,w:2.0)(G:W-1(V757_D-1)->A:W-1(V758_D-1)) to (AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1)->A:W-1(V758_D-1) adding edge: AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) to A:W-1(V758_D-1) removing edge Edge(757->758,w:2.0)(G:W-1(V757_D-1)->A:W-1(V758_D-1)) removing edge Edge(717->757,w:2.0)(AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1)->G:W-1(V757_D-1)) Found potential edge: Edge(717->758,w:2.0) between AGCCACAGGT...ACTTCCTGTG:W5(V717_D-1) and A:W-1(V758_D-1) removing vertex A:W-1(V758_D-1) was concatenated into AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) removing edge Edge(717->758,w:2.0)(AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)->A:W-1(V758_D-1)) Found potential edge: Edge(786->787,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCA:W0(V786_D-1) and A:W-1(V787_D-1) removing vertex A:W-1(V787_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) Want to move edge Edge(787->788,w:2.0)(A:W-1(V787_D-1)->A:W-1(V788_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1)->A:W-1(V788_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) to A:W-1(V788_D-1) removing edge Edge(787->788,w:2.0)(A:W-1(V787_D-1)->A:W-1(V788_D-1)) removing edge Edge(786->787,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1)->A:W-1(V787_D-1)) Found potential edge: Edge(786->788,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAA:W0(V786_D-1) and A:W-1(V788_D-1) removing vertex A:W-1(V788_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) Want to move edge Edge(788->789,w:2.0)(A:W-1(V788_D-1)->C:W-1(V789_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1)->C:W-1(V789_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) to C:W-1(V789_D-1) removing edge Edge(788->789,w:2.0)(A:W-1(V788_D-1)->C:W-1(V789_D-1)) removing edge Edge(786->788,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1)->A:W-1(V788_D-1)) Found potential edge: Edge(786->789,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAA:W0(V786_D-1) and C:W-1(V789_D-1) removing vertex C:W-1(V789_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) Want to move edge Edge(789->790,w:2.0)(C:W-1(V789_D-1)->C:W-1(V790_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1)->C:W-1(V790_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) to C:W-1(V790_D-1) removing edge Edge(789->790,w:2.0)(C:W-1(V789_D-1)->C:W-1(V790_D-1)) removing edge Edge(786->789,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1)->C:W-1(V789_D-1)) Found potential edge: Edge(786->790,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAAC:W0(V786_D-1) and C:W-1(V790_D-1) removing vertex C:W-1(V790_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) Want to move edge Edge(790->791,w:2.0)(C:W-1(V790_D-1)->C:W-1(V791_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1)->C:W-1(V791_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) to C:W-1(V791_D-1) removing edge Edge(790->791,w:2.0)(C:W-1(V790_D-1)->C:W-1(V791_D-1)) removing edge Edge(786->790,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1)->C:W-1(V790_D-1)) Found potential edge: Edge(786->791,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACC:W0(V786_D-1) and C:W-1(V791_D-1) removing vertex C:W-1(V791_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) Want to move edge Edge(791->792,w:2.0)(C:W-1(V791_D-1)->A:W-1(V792_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1)->A:W-1(V792_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) to A:W-1(V792_D-1) removing edge Edge(791->792,w:2.0)(C:W-1(V791_D-1)->A:W-1(V792_D-1)) removing edge Edge(786->791,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1)->C:W-1(V791_D-1)) Found potential edge: Edge(786->792,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACCC:W0(V786_D-1) and A:W-1(V792_D-1) removing vertex A:W-1(V792_D-1) was concatenated into GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) Want to move edge Edge(792->793,w:2.0)(A:W-1(V792_D-1)->G:W-1(V793_D-1)) to (GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1)->G:W-1(V793_D-1) adding edge: GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) to G:W-1(V793_D-1) removing edge Edge(792->793,w:2.0)(A:W-1(V792_D-1)->G:W-1(V793_D-1)) removing edge Edge(786->792,w:2.0)(GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1)->A:W-1(V792_D-1)) Found potential edge: Edge(786->793,w:2.0) between GCTAGGGGAAATAGGGGAGCTCCAAACCCA:W0(V786_D-1) and G:W-1(V793_D-1) removing vertex G:W-1(V793_D-1) was concatenated into GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) Want to move edge Edge(793->794,w:2.0)(G:W-1(V793_D-1)->C:W-1(V794_D-1)) to (GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1)->C:W-1(V794_D-1) adding edge: GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) to C:W-1(V794_D-1) removing edge Edge(793->794,w:2.0)(G:W-1(V793_D-1)->C:W-1(V794_D-1)) removing edge Edge(786->793,w:2.0)(GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1)->G:W-1(V793_D-1)) Found potential edge: Edge(786->794,w:2.0) between GCTAGGGGAA...CCAAACCCAG:W0(V786_D-1) and C:W-1(V794_D-1) removing vertex C:W-1(V794_D-1) was concatenated into GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) Want to move edge Edge(794->795,w:2.0)(C:W-1(V794_D-1)->C:W-1(V795_D-1)) to (GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1)->C:W-1(V795_D-1) adding edge: GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) to C:W-1(V795_D-1) removing edge Edge(794->795,w:2.0)(C:W-1(V794_D-1)->C:W-1(V795_D-1)) removing edge Edge(786->794,w:2.0)(GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1)->C:W-1(V794_D-1)) Found potential edge: Edge(786->795,w:2.0) between GCTAGGGGAA...CAAACCCAGC:W1(V786_D-1) and C:W-1(V795_D-1) removing vertex C:W-1(V795_D-1) was concatenated into GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) Want to move edge Edge(795->796,w:2.0)(C:W-1(V795_D-1)->C:W-1(V796_D-1)) to (GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1)->C:W-1(V796_D-1) adding edge: GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) to C:W-1(V796_D-1) removing edge Edge(795->796,w:2.0)(C:W-1(V795_D-1)->C:W-1(V796_D-1)) removing edge Edge(786->795,w:2.0)(GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1)->C:W-1(V795_D-1)) Found potential edge: Edge(786->796,w:2.0) between GCTAGGGGAA...AAACCCAGCC:W1(V786_D-1) and C:W-1(V796_D-1) removing vertex C:W-1(V796_D-1) was concatenated into GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) Want to move edge Edge(796->797,w:2.0)(C:W-1(V796_D-1)->C:W-1(V797_D-1)) to (GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1)->C:W-1(V797_D-1) adding edge: GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) to C:W-1(V797_D-1) removing edge Edge(796->797,w:2.0)(C:W-1(V796_D-1)->C:W-1(V797_D-1)) removing edge Edge(786->796,w:2.0)(GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1)->C:W-1(V796_D-1)) Found potential edge: Edge(786->797,w:2.0) between GCTAGGGGAA...AACCCAGCCC:W1(V786_D-1) and C:W-1(V797_D-1) removing vertex C:W-1(V797_D-1) was concatenated into GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) Want to move edge Edge(797->798,w:2.0)(C:W-1(V797_D-1)->G:W-1(V798_D-1)) to (GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1)->G:W-1(V798_D-1) adding edge: GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) to G:W-1(V798_D-1) removing edge Edge(797->798,w:2.0)(C:W-1(V797_D-1)->G:W-1(V798_D-1)) removing edge Edge(786->797,w:2.0)(GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1)->C:W-1(V797_D-1)) Found potential edge: Edge(786->798,w:2.0) between GCTAGGGGAA...ACCCAGCCCC:W1(V786_D-1) and G:W-1(V798_D-1) removing vertex G:W-1(V798_D-1) was concatenated into GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) Want to move edge Edge(798->799,w:2.0)(G:W-1(V798_D-1)->T:W-1(V799_D-1)) to (GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1)->T:W-1(V799_D-1) adding edge: GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) to T:W-1(V799_D-1) removing edge Edge(798->799,w:2.0)(G:W-1(V798_D-1)->T:W-1(V799_D-1)) removing edge Edge(786->798,w:2.0)(GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1)->G:W-1(V798_D-1)) Found potential edge: Edge(786->799,w:2.0) between GCTAGGGGAA...CCCAGCCCCG:W1(V786_D-1) and T:W-1(V799_D-1) removing vertex T:W-1(V799_D-1) was concatenated into GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) Want to move edge Edge(799->800,w:2.0)(T:W-1(V799_D-1)->G:W-1(V800_D-1)) to (GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1)->G:W-1(V800_D-1) adding edge: GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) to G:W-1(V800_D-1) removing edge Edge(799->800,w:2.0)(T:W-1(V799_D-1)->G:W-1(V800_D-1)) removing edge Edge(786->799,w:2.0)(GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1)->T:W-1(V799_D-1)) Found potential edge: Edge(786->800,w:2.0) between GCTAGGGGAA...CCAGCCCCGT:W1(V786_D-1) and G:W-1(V800_D-1) removing vertex G:W-1(V800_D-1) was concatenated into GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) Want to move edge Edge(800->801,w:2.0)(G:W-1(V800_D-1)->G:W-1(V801_D-1)) to (GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1)->G:W-1(V801_D-1) adding edge: GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) to G:W-1(V801_D-1) removing edge Edge(800->801,w:2.0)(G:W-1(V800_D-1)->G:W-1(V801_D-1)) removing edge Edge(786->800,w:2.0)(GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1)->G:W-1(V800_D-1)) Found potential edge: Edge(786->801,w:2.0) between GCTAGGGGAA...CAGCCCCGTG:W1(V786_D-1) and G:W-1(V801_D-1) removing vertex G:W-1(V801_D-1) was concatenated into GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) Want to move edge Edge(801->802,w:2.0)(G:W-1(V801_D-1)->A:W-1(V802_D-1)) to (GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1)->A:W-1(V802_D-1) adding edge: GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) to A:W-1(V802_D-1) removing edge Edge(801->802,w:2.0)(G:W-1(V801_D-1)->A:W-1(V802_D-1)) removing edge Edge(786->801,w:2.0)(GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1)->G:W-1(V801_D-1)) Found potential edge: Edge(786->802,w:2.0) between GCTAGGGGAA...AGCCCCGTGG:W1(V786_D-1) and A:W-1(V802_D-1) removing vertex A:W-1(V802_D-1) was concatenated into GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) Want to move edge Edge(802->803,w:2.0)(A:W-1(V802_D-1)->G:W-1(V803_D-1)) to (GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1)->G:W-1(V803_D-1) adding edge: GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) to G:W-1(V803_D-1) removing edge Edge(802->803,w:2.0)(A:W-1(V802_D-1)->G:W-1(V803_D-1)) removing edge Edge(786->802,w:2.0)(GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1)->A:W-1(V802_D-1)) Found potential edge: Edge(786->803,w:2.0) between GCTAGGGGAA...GCCCCGTGGA:W1(V786_D-1) and G:W-1(V803_D-1) removing vertex G:W-1(V803_D-1) was concatenated into GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) Want to move edge Edge(803->804,w:2.0)(G:W-1(V803_D-1)->G:W-1(V804_D-1)) to (GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1)->G:W-1(V804_D-1) adding edge: GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) to G:W-1(V804_D-1) removing edge Edge(803->804,w:2.0)(G:W-1(V803_D-1)->G:W-1(V804_D-1)) removing edge Edge(786->803,w:2.0)(GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1)->G:W-1(V803_D-1)) Found potential edge: Edge(786->804,w:2.0) between GCTAGGGGAA...CCCCGTGGAG:W1(V786_D-1) and G:W-1(V804_D-1) removing vertex G:W-1(V804_D-1) was concatenated into GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) Want to move edge Edge(804->805,w:2.0)(G:W-1(V804_D-1)->G:W-1(V805_D-1)) to (GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1)->G:W-1(V805_D-1) adding edge: GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) to G:W-1(V805_D-1) removing edge Edge(804->805,w:2.0)(G:W-1(V804_D-1)->G:W-1(V805_D-1)) removing edge Edge(786->804,w:2.0)(GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1)->G:W-1(V804_D-1)) Found potential edge: Edge(786->805,w:2.0) between GCTAGGGGAA...CCCGTGGAGG:W1(V786_D-1) and G:W-1(V805_D-1) removing vertex G:W-1(V805_D-1) was concatenated into GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) Want to move edge Edge(805->806,w:2.0)(G:W-1(V805_D-1)->A:W-1(V806_D-1)) to (GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1)->A:W-1(V806_D-1) adding edge: GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) to A:W-1(V806_D-1) removing edge Edge(805->806,w:2.0)(G:W-1(V805_D-1)->A:W-1(V806_D-1)) removing edge Edge(786->805,w:2.0)(GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1)->G:W-1(V805_D-1)) Found potential edge: Edge(786->806,w:2.0) between GCTAGGGGAA...CCGTGGAGGG:W1(V786_D-1) and A:W-1(V806_D-1) removing vertex A:W-1(V806_D-1) was concatenated into GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) Want to move edge Edge(806->807,w:2.0)(A:W-1(V806_D-1)->G:W-1(V807_D-1)) to (GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1)->G:W-1(V807_D-1) adding edge: GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) to G:W-1(V807_D-1) removing edge Edge(806->807,w:2.0)(A:W-1(V806_D-1)->G:W-1(V807_D-1)) removing edge Edge(786->806,w:2.0)(GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1)->A:W-1(V806_D-1)) Found potential edge: Edge(786->807,w:2.0) between GCTAGGGGAA...CGTGGAGGGA:W1(V786_D-1) and G:W-1(V807_D-1) removing vertex G:W-1(V807_D-1) was concatenated into GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) Want to move edge Edge(807->808,w:2.0)(G:W-1(V807_D-1)->C:W-1(V808_D-1)) to (GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1)->C:W-1(V808_D-1) adding edge: GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) to C:W-1(V808_D-1) removing edge Edge(807->808,w:2.0)(G:W-1(V807_D-1)->C:W-1(V808_D-1)) removing edge Edge(786->807,w:2.0)(GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1)->G:W-1(V807_D-1)) Found potential edge: Edge(786->808,w:2.0) between GCTAGGGGAA...GTGGAGGGAG:W1(V786_D-1) and C:W-1(V808_D-1) removing vertex C:W-1(V808_D-1) was concatenated into GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) Want to move edge Edge(808->809,w:2.0)(C:W-1(V808_D-1)->C:W-1(V809_D-1)) to (GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1)->C:W-1(V809_D-1) adding edge: GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) to C:W-1(V809_D-1) removing edge Edge(808->809,w:2.0)(C:W-1(V808_D-1)->C:W-1(V809_D-1)) removing edge Edge(786->808,w:2.0)(GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1)->C:W-1(V808_D-1)) Found potential edge: Edge(786->809,w:2.0) between GCTAGGGGAA...TGGAGGGAGC:W1(V786_D-1) and C:W-1(V809_D-1) removing vertex C:W-1(V809_D-1) was concatenated into GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) Want to move edge Edge(809->810,w:2.0)(C:W-1(V809_D-1)->A:W-1(V810_D-1)) to (GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1)->A:W-1(V810_D-1) adding edge: GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) to A:W-1(V810_D-1) removing edge Edge(809->810,w:2.0)(C:W-1(V809_D-1)->A:W-1(V810_D-1)) removing edge Edge(786->809,w:2.0)(GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1)->C:W-1(V809_D-1)) Found potential edge: Edge(786->810,w:2.0) between GCTAGGGGAA...GGAGGGAGCC:W1(V786_D-1) and A:W-1(V810_D-1) removing vertex A:W-1(V810_D-1) was concatenated into GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) Want to move edge Edge(810->811,w:2.0)(A:W-1(V810_D-1)->C:W-1(V811_D-1)) to (GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1)->C:W-1(V811_D-1) adding edge: GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) to C:W-1(V811_D-1) removing edge Edge(810->811,w:2.0)(A:W-1(V810_D-1)->C:W-1(V811_D-1)) removing edge Edge(786->810,w:2.0)(GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1)->A:W-1(V810_D-1)) Found potential edge: Edge(786->811,w:2.0) between GCTAGGGGAA...GAGGGAGCCA:W1(V786_D-1) and C:W-1(V811_D-1) removing vertex C:W-1(V811_D-1) was concatenated into GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) Want to move edge Edge(811->812,w:2.0)(C:W-1(V811_D-1)->C:W-1(V812_D-1)) to (GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1)->C:W-1(V812_D-1) adding edge: GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) to C:W-1(V812_D-1) removing edge Edge(811->812,w:2.0)(C:W-1(V811_D-1)->C:W-1(V812_D-1)) removing edge Edge(786->811,w:2.0)(GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1)->C:W-1(V811_D-1)) Found potential edge: Edge(786->812,w:2.0) between GCTAGGGGAA...AGGGAGCCAC:W1(V786_D-1) and C:W-1(V812_D-1) removing vertex C:W-1(V812_D-1) was concatenated into GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) Want to move edge Edge(812->717,w:2.0)(C:W-1(V812_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)) to (GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) adding edge: GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) to AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) removing edge Edge(812->717,w:2.0)(C:W-1(V812_D-1)->AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1)) removing edge Edge(786->812,w:2.0)(GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1)->C:W-1(V812_D-1)) Found potential edge: Edge(813->814,w:2.0) between C:W-1(V813_D-1) and A:W-1(V814_D-1) removing vertex A:W-1(V814_D-1) was concatenated into CA:W2(V813_D-1) Want to move edge Edge(814->815,w:2.0)(A:W-1(V814_D-1)->G:W-1(V815_D-1)) to (CA:W2(V813_D-1)->G:W-1(V815_D-1) adding edge: CA:W2(V813_D-1) to G:W-1(V815_D-1) removing edge Edge(814->815,w:2.0)(A:W-1(V814_D-1)->G:W-1(V815_D-1)) removing edge Edge(813->814,w:2.0)(CA:W2(V813_D-1)->A:W-1(V814_D-1)) Found potential edge: Edge(813->815,w:2.0) between CA:W2(V813_D-1) and G:W-1(V815_D-1) removing vertex G:W-1(V815_D-1) was concatenated into CAG:W2(V813_D-1) Want to move edge Edge(815->816,w:2.0)(G:W-1(V815_D-1)->C:W-1(V816_D-1)) to (CAG:W2(V813_D-1)->C:W-1(V816_D-1) adding edge: CAG:W2(V813_D-1) to C:W-1(V816_D-1) removing edge Edge(815->816,w:2.0)(G:W-1(V815_D-1)->C:W-1(V816_D-1)) removing edge Edge(813->815,w:2.0)(CAG:W2(V813_D-1)->G:W-1(V815_D-1)) Found potential edge: Edge(813->816,w:2.0) between CAG:W2(V813_D-1) and C:W-1(V816_D-1) removing vertex C:W-1(V816_D-1) was concatenated into CAGC:W2(V813_D-1) Want to move edge Edge(816->817,w:2.0)(C:W-1(V816_D-1)->A:W-1(V817_D-1)) to (CAGC:W2(V813_D-1)->A:W-1(V817_D-1) adding edge: CAGC:W2(V813_D-1) to A:W-1(V817_D-1) removing edge Edge(816->817,w:2.0)(C:W-1(V816_D-1)->A:W-1(V817_D-1)) removing edge Edge(813->816,w:2.0)(CAGC:W2(V813_D-1)->C:W-1(V816_D-1)) Found potential edge: Edge(813->817,w:2.0) between CAGC:W2(V813_D-1) and A:W-1(V817_D-1) removing vertex A:W-1(V817_D-1) was concatenated into CAGCA:W2(V813_D-1) Want to move edge Edge(817->818,w:2.0)(A:W-1(V817_D-1)->C:W-1(V818_D-1)) to (CAGCA:W2(V813_D-1)->C:W-1(V818_D-1) adding edge: CAGCA:W2(V813_D-1) to C:W-1(V818_D-1) removing edge Edge(817->818,w:2.0)(A:W-1(V817_D-1)->C:W-1(V818_D-1)) removing edge Edge(813->817,w:2.0)(CAGCA:W2(V813_D-1)->A:W-1(V817_D-1)) Found potential edge: Edge(813->818,w:2.0) between CAGCA:W2(V813_D-1) and C:W-1(V818_D-1) removing vertex C:W-1(V818_D-1) was concatenated into CAGCAC:W2(V813_D-1) Want to move edge Edge(818->819,w:2.0)(C:W-1(V818_D-1)->T:W-1(V819_D-1)) to (CAGCAC:W2(V813_D-1)->T:W-1(V819_D-1) adding edge: CAGCAC:W2(V813_D-1) to T:W-1(V819_D-1) removing edge Edge(818->819,w:2.0)(C:W-1(V818_D-1)->T:W-1(V819_D-1)) removing edge Edge(813->818,w:2.0)(CAGCAC:W2(V813_D-1)->C:W-1(V818_D-1)) Found potential edge: Edge(813->819,w:2.0) between CAGCAC:W2(V813_D-1) and T:W-1(V819_D-1) removing vertex T:W-1(V819_D-1) was concatenated into CAGCACT:W2(V813_D-1) Want to move edge Edge(819->820,w:2.0)(T:W-1(V819_D-1)->C:W-1(V820_D-1)) to (CAGCACT:W2(V813_D-1)->C:W-1(V820_D-1) adding edge: CAGCACT:W2(V813_D-1) to C:W-1(V820_D-1) removing edge Edge(819->820,w:2.0)(T:W-1(V819_D-1)->C:W-1(V820_D-1)) removing edge Edge(813->819,w:2.0)(CAGCACT:W2(V813_D-1)->T:W-1(V819_D-1)) Found potential edge: Edge(813->820,w:2.0) between CAGCACT:W2(V813_D-1) and C:W-1(V820_D-1) removing vertex C:W-1(V820_D-1) was concatenated into CAGCACTC:W2(V813_D-1) Want to move edge Edge(820->821,w:2.0)(C:W-1(V820_D-1)->T:W-1(V821_D-1)) to (CAGCACTC:W2(V813_D-1)->T:W-1(V821_D-1) adding edge: CAGCACTC:W2(V813_D-1) to T:W-1(V821_D-1) removing edge Edge(820->821,w:2.0)(C:W-1(V820_D-1)->T:W-1(V821_D-1)) removing edge Edge(813->820,w:2.0)(CAGCACTC:W2(V813_D-1)->C:W-1(V820_D-1)) Found potential edge: Edge(813->821,w:2.0) between CAGCACTC:W2(V813_D-1) and T:W-1(V821_D-1) removing vertex T:W-1(V821_D-1) was concatenated into CAGCACTCT:W2(V813_D-1) Want to move edge Edge(821->822,w:2.0)(T:W-1(V821_D-1)->G:W-1(V822_D-1)) to (CAGCACTCT:W2(V813_D-1)->G:W-1(V822_D-1) adding edge: CAGCACTCT:W2(V813_D-1) to G:W-1(V822_D-1) removing edge Edge(821->822,w:2.0)(T:W-1(V821_D-1)->G:W-1(V822_D-1)) removing edge Edge(813->821,w:2.0)(CAGCACTCT:W2(V813_D-1)->T:W-1(V821_D-1)) Found potential edge: Edge(813->822,w:2.0) between CAGCACTCT:W2(V813_D-1) and G:W-1(V822_D-1) removing vertex G:W-1(V822_D-1) was concatenated into CAGCACTCTG:W2(V813_D-1) Want to move edge Edge(822->823,w:2.0)(G:W-1(V822_D-1)->A:W-1(V823_D-1)) to (CAGCACTCTG:W2(V813_D-1)->A:W-1(V823_D-1) adding edge: CAGCACTCTG:W2(V813_D-1) to A:W-1(V823_D-1) removing edge Edge(822->823,w:2.0)(G:W-1(V822_D-1)->A:W-1(V823_D-1)) removing edge Edge(813->822,w:2.0)(CAGCACTCTG:W2(V813_D-1)->G:W-1(V822_D-1)) Found potential edge: Edge(813->823,w:2.0) between CAGCACTCTG:W2(V813_D-1) and A:W-1(V823_D-1) removing vertex A:W-1(V823_D-1) was concatenated into CAGCACTCTGA:W2(V813_D-1) Want to move edge Edge(823->824,w:2.0)(A:W-1(V823_D-1)->A:W-1(V824_D-1)) to (CAGCACTCTGA:W2(V813_D-1)->A:W-1(V824_D-1) adding edge: CAGCACTCTGA:W2(V813_D-1) to A:W-1(V824_D-1) removing edge Edge(823->824,w:2.0)(A:W-1(V823_D-1)->A:W-1(V824_D-1)) removing edge Edge(813->823,w:2.0)(CAGCACTCTGA:W2(V813_D-1)->A:W-1(V823_D-1)) Found potential edge: Edge(813->824,w:2.0) between CAGCACTCTGA:W2(V813_D-1) and A:W-1(V824_D-1) removing vertex A:W-1(V824_D-1) was concatenated into CAGCACTCTGAA:W2(V813_D-1) Want to move edge Edge(824->825,w:2.0)(A:W-1(V824_D-1)->C:W-1(V825_D-1)) to (CAGCACTCTGAA:W2(V813_D-1)->C:W-1(V825_D-1) adding edge: CAGCACTCTGAA:W2(V813_D-1) to C:W-1(V825_D-1) removing edge Edge(824->825,w:2.0)(A:W-1(V824_D-1)->C:W-1(V825_D-1)) removing edge Edge(813->824,w:2.0)(CAGCACTCTGAA:W2(V813_D-1)->A:W-1(V824_D-1)) Found potential edge: Edge(813->825,w:2.0) between CAGCACTCTGAA:W2(V813_D-1) and C:W-1(V825_D-1) removing vertex C:W-1(V825_D-1) was concatenated into CAGCACTCTGAAC:W2(V813_D-1) Want to move edge Edge(825->826,w:2.0)(C:W-1(V825_D-1)->C:W-1(V826_D-1)) to (CAGCACTCTGAAC:W2(V813_D-1)->C:W-1(V826_D-1) adding edge: CAGCACTCTGAAC:W2(V813_D-1) to C:W-1(V826_D-1) removing edge Edge(825->826,w:2.0)(C:W-1(V825_D-1)->C:W-1(V826_D-1)) removing edge Edge(813->825,w:2.0)(CAGCACTCTGAAC:W2(V813_D-1)->C:W-1(V825_D-1)) Found potential edge: Edge(813->826,w:2.0) between CAGCACTCTGAAC:W2(V813_D-1) and C:W-1(V826_D-1) removing vertex C:W-1(V826_D-1) was concatenated into CAGCACTCTGAACC:W2(V813_D-1) Want to move edge Edge(826->827,w:2.0)(C:W-1(V826_D-1)->C:W-1(V827_D-1)) to (CAGCACTCTGAACC:W2(V813_D-1)->C:W-1(V827_D-1) adding edge: CAGCACTCTGAACC:W2(V813_D-1) to C:W-1(V827_D-1) removing edge Edge(826->827,w:2.0)(C:W-1(V826_D-1)->C:W-1(V827_D-1)) removing edge Edge(813->826,w:2.0)(CAGCACTCTGAACC:W2(V813_D-1)->C:W-1(V826_D-1)) Found potential edge: Edge(813->827,w:2.0) between CAGCACTCTGAACC:W2(V813_D-1) and C:W-1(V827_D-1) removing vertex C:W-1(V827_D-1) was concatenated into CAGCACTCTGAACCC:W2(V813_D-1) Want to move edge Edge(827->828,w:2.0)(C:W-1(V827_D-1)->T:W-1(V828_D-1)) to (CAGCACTCTGAACCC:W2(V813_D-1)->T:W-1(V828_D-1) adding edge: CAGCACTCTGAACCC:W2(V813_D-1) to T:W-1(V828_D-1) removing edge Edge(827->828,w:2.0)(C:W-1(V827_D-1)->T:W-1(V828_D-1)) removing edge Edge(813->827,w:2.0)(CAGCACTCTGAACCC:W2(V813_D-1)->C:W-1(V827_D-1)) Found potential edge: Edge(813->828,w:2.0) between CAGCACTCTGAACCC:W2(V813_D-1) and T:W-1(V828_D-1) removing vertex T:W-1(V828_D-1) was concatenated into CAGCACTCTGAACCCT:W2(V813_D-1) Want to move edge Edge(828->829,w:2.0)(T:W-1(V828_D-1)->G:W-1(V829_D-1)) to (CAGCACTCTGAACCCT:W2(V813_D-1)->G:W-1(V829_D-1) adding edge: CAGCACTCTGAACCCT:W2(V813_D-1) to G:W-1(V829_D-1) removing edge Edge(828->829,w:2.0)(T:W-1(V828_D-1)->G:W-1(V829_D-1)) removing edge Edge(813->828,w:2.0)(CAGCACTCTGAACCCT:W2(V813_D-1)->T:W-1(V828_D-1)) Found potential edge: Edge(813->829,w:2.0) between CAGCACTCTGAACCCT:W2(V813_D-1) and G:W-1(V829_D-1) removing vertex G:W-1(V829_D-1) was concatenated into CAGCACTCTGAACCCTG:W2(V813_D-1) Want to move edge Edge(829->830,w:2.0)(G:W-1(V829_D-1)->T:W-1(V830_D-1)) to (CAGCACTCTGAACCCTG:W2(V813_D-1)->T:W-1(V830_D-1) adding edge: CAGCACTCTGAACCCTG:W2(V813_D-1) to T:W-1(V830_D-1) removing edge Edge(829->830,w:2.0)(G:W-1(V829_D-1)->T:W-1(V830_D-1)) removing edge Edge(813->829,w:2.0)(CAGCACTCTGAACCCTG:W2(V813_D-1)->G:W-1(V829_D-1)) Found potential edge: Edge(813->830,w:2.0) between CAGCACTCTGAACCCTG:W2(V813_D-1) and T:W-1(V830_D-1) removing vertex T:W-1(V830_D-1) was concatenated into CAGCACTCTGAACCCTGT:W2(V813_D-1) Want to move edge Edge(830->831,w:2.0)(T:W-1(V830_D-1)->G:W-1(V831_D-1)) to (CAGCACTCTGAACCCTGT:W2(V813_D-1)->G:W-1(V831_D-1) adding edge: CAGCACTCTGAACCCTGT:W2(V813_D-1) to G:W-1(V831_D-1) removing edge Edge(830->831,w:2.0)(T:W-1(V830_D-1)->G:W-1(V831_D-1)) removing edge Edge(813->830,w:2.0)(CAGCACTCTGAACCCTGT:W2(V813_D-1)->T:W-1(V830_D-1)) Found potential edge: Edge(813->831,w:2.0) between CAGCACTCTGAACCCTGT:W2(V813_D-1) and G:W-1(V831_D-1) removing vertex G:W-1(V831_D-1) was concatenated into CAGCACTCTGAACCCTGTG:W2(V813_D-1) Want to move edge Edge(831->832,w:2.0)(G:W-1(V831_D-1)->A:W-1(V832_D-1)) to (CAGCACTCTGAACCCTGTG:W2(V813_D-1)->A:W-1(V832_D-1) adding edge: CAGCACTCTGAACCCTGTG:W2(V813_D-1) to A:W-1(V832_D-1) removing edge Edge(831->832,w:2.0)(G:W-1(V831_D-1)->A:W-1(V832_D-1)) removing edge Edge(813->831,w:2.0)(CAGCACTCTGAACCCTGTG:W2(V813_D-1)->G:W-1(V831_D-1)) Found potential edge: Edge(813->832,w:2.0) between CAGCACTCTGAACCCTGTG:W2(V813_D-1) and A:W-1(V832_D-1) removing vertex A:W-1(V832_D-1) was concatenated into CAGCACTCTGAACCCTGTGA:W2(V813_D-1) Want to move edge Edge(832->833,w:2.0)(A:W-1(V832_D-1)->G:W-1(V833_D-1)) to (CAGCACTCTGAACCCTGTGA:W2(V813_D-1)->G:W-1(V833_D-1) adding edge: CAGCACTCTGAACCCTGTGA:W2(V813_D-1) to G:W-1(V833_D-1) removing edge Edge(832->833,w:2.0)(A:W-1(V832_D-1)->G:W-1(V833_D-1)) removing edge Edge(813->832,w:2.0)(CAGCACTCTGAACCCTGTGA:W2(V813_D-1)->A:W-1(V832_D-1)) Found potential edge: Edge(813->833,w:2.0) between CAGCACTCTGAACCCTGTGA:W2(V813_D-1) and G:W-1(V833_D-1) removing vertex G:W-1(V833_D-1) was concatenated into CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) Want to move edge Edge(833->834,w:2.0)(G:W-1(V833_D-1)->G:W-1(V834_D-1)) to (CAGCACTCTGAACCCTGTGAG:W2(V813_D-1)->G:W-1(V834_D-1) adding edge: CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) to G:W-1(V834_D-1) removing edge Edge(833->834,w:2.0)(G:W-1(V833_D-1)->G:W-1(V834_D-1)) removing edge Edge(813->833,w:2.0)(CAGCACTCTGAACCCTGTGAG:W2(V813_D-1)->G:W-1(V833_D-1)) Found potential edge: Edge(813->834,w:2.0) between CAGCACTCTGAACCCTGTGAG:W2(V813_D-1) and G:W-1(V834_D-1) removing vertex G:W-1(V834_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) Want to move edge Edge(834->835,w:2.0)(G:W-1(V834_D-1)->C:W-1(V835_D-1)) to (CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1)->C:W-1(V835_D-1) adding edge: CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) to C:W-1(V835_D-1) removing edge Edge(834->835,w:2.0)(G:W-1(V834_D-1)->C:W-1(V835_D-1)) removing edge Edge(813->834,w:2.0)(CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1)->G:W-1(V834_D-1)) Found potential edge: Edge(813->835,w:2.0) between CAGCACTCTGAACCCTGTGAGG:W2(V813_D-1) and C:W-1(V835_D-1) removing vertex C:W-1(V835_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) Want to move edge Edge(835->836,w:2.0)(C:W-1(V835_D-1)->A:W-1(V836_D-1)) to (CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1)->A:W-1(V836_D-1) adding edge: CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) to A:W-1(V836_D-1) removing edge Edge(835->836,w:2.0)(C:W-1(V835_D-1)->A:W-1(V836_D-1)) removing edge Edge(813->835,w:2.0)(CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1)->C:W-1(V835_D-1)) Found potential edge: Edge(813->836,w:2.0) between CAGCACTCTGAACCCTGTGAGGC:W2(V813_D-1) and A:W-1(V836_D-1) removing vertex A:W-1(V836_D-1) was concatenated into CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) Want to move edge Edge(836->549,w:2.0)(A:W-1(V836_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)) to (CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) adding edge: CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) to AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) removing edge Edge(836->549,w:2.0)(A:W-1(V836_D-1)->AGTCCACCAC...GGGAGCCACC:W6(V549_D-1)) removing edge Edge(813->836,w:2.0)(CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1)->A:W-1(V836_D-1)) Found potential edge: Edge(885->886,w:2.0) between G:W-1(V885_D-1) and C:W-1(V886_D-1) removing vertex C:W-1(V886_D-1) was concatenated into GC:W2(V885_D-1) Want to move edge Edge(886->887,w:2.0)(C:W-1(V886_D-1)->T:W-1(V887_D-1)) to (GC:W2(V885_D-1)->T:W-1(V887_D-1) adding edge: GC:W2(V885_D-1) to T:W-1(V887_D-1) removing edge Edge(886->887,w:2.0)(C:W-1(V886_D-1)->T:W-1(V887_D-1)) removing edge Edge(885->886,w:2.0)(GC:W2(V885_D-1)->C:W-1(V886_D-1)) Found potential edge: Edge(885->887,w:2.0) between GC:W2(V885_D-1) and T:W-1(V887_D-1) removing vertex T:W-1(V887_D-1) was concatenated into GCT:W2(V885_D-1) Want to move edge Edge(887->888,w:2.0)(T:W-1(V887_D-1)->C:W-1(V888_D-1)) to (GCT:W2(V885_D-1)->C:W-1(V888_D-1) adding edge: GCT:W2(V885_D-1) to C:W-1(V888_D-1) removing edge Edge(887->888,w:2.0)(T:W-1(V887_D-1)->C:W-1(V888_D-1)) removing edge Edge(885->887,w:2.0)(GCT:W2(V885_D-1)->T:W-1(V887_D-1)) Found potential edge: Edge(885->888,w:2.0) between GCT:W2(V885_D-1) and C:W-1(V888_D-1) removing vertex C:W-1(V888_D-1) was concatenated into GCTC:W2(V885_D-1) Want to move edge Edge(888->889,w:2.0)(C:W-1(V888_D-1)->A:W-1(V889_D-1)) to (GCTC:W2(V885_D-1)->A:W-1(V889_D-1) adding edge: GCTC:W2(V885_D-1) to A:W-1(V889_D-1) removing edge Edge(888->889,w:2.0)(C:W-1(V888_D-1)->A:W-1(V889_D-1)) removing edge Edge(885->888,w:2.0)(GCTC:W2(V885_D-1)->C:W-1(V888_D-1)) Found potential edge: Edge(885->889,w:2.0) between GCTC:W2(V885_D-1) and A:W-1(V889_D-1) removing vertex A:W-1(V889_D-1) was concatenated into GCTCA:W2(V885_D-1) Want to move edge Edge(889->890,w:2.0)(A:W-1(V889_D-1)->T:W-1(V890_D-1)) to (GCTCA:W2(V885_D-1)->T:W-1(V890_D-1) adding edge: GCTCA:W2(V885_D-1) to T:W-1(V890_D-1) removing edge Edge(889->890,w:2.0)(A:W-1(V889_D-1)->T:W-1(V890_D-1)) removing edge Edge(885->889,w:2.0)(GCTCA:W2(V885_D-1)->A:W-1(V889_D-1)) Found potential edge: Edge(885->890,w:2.0) between GCTCA:W2(V885_D-1) and T:W-1(V890_D-1) removing vertex T:W-1(V890_D-1) was concatenated into GCTCAT:W2(V885_D-1) Want to move edge Edge(890->891,w:2.0)(T:W-1(V890_D-1)->C:W-1(V891_D-1)) to (GCTCAT:W2(V885_D-1)->C:W-1(V891_D-1) adding edge: GCTCAT:W2(V885_D-1) to C:W-1(V891_D-1) removing edge Edge(890->891,w:2.0)(T:W-1(V890_D-1)->C:W-1(V891_D-1)) removing edge Edge(885->890,w:2.0)(GCTCAT:W2(V885_D-1)->T:W-1(V890_D-1)) Found potential edge: Edge(885->891,w:2.0) between GCTCAT:W2(V885_D-1) and C:W-1(V891_D-1) removing vertex C:W-1(V891_D-1) was concatenated into GCTCATC:W2(V885_D-1) Want to move edge Edge(891->892,w:2.0)(C:W-1(V891_D-1)->A:W-1(V892_D-1)) to (GCTCATC:W2(V885_D-1)->A:W-1(V892_D-1) adding edge: GCTCATC:W2(V885_D-1) to A:W-1(V892_D-1) removing edge Edge(891->892,w:2.0)(C:W-1(V891_D-1)->A:W-1(V892_D-1)) removing edge Edge(885->891,w:2.0)(GCTCATC:W2(V885_D-1)->C:W-1(V891_D-1)) Found potential edge: Edge(885->892,w:2.0) between GCTCATC:W2(V885_D-1) and A:W-1(V892_D-1) removing vertex A:W-1(V892_D-1) was concatenated into GCTCATCA:W2(V885_D-1) Want to move edge Edge(892->893,w:2.0)(A:W-1(V892_D-1)->G:W-1(V893_D-1)) to (GCTCATCA:W2(V885_D-1)->G:W-1(V893_D-1) adding edge: GCTCATCA:W2(V885_D-1) to G:W-1(V893_D-1) removing edge Edge(892->893,w:2.0)(A:W-1(V892_D-1)->G:W-1(V893_D-1)) removing edge Edge(885->892,w:2.0)(GCTCATCA:W2(V885_D-1)->A:W-1(V892_D-1)) Found potential edge: Edge(885->893,w:2.0) between GCTCATCA:W2(V885_D-1) and G:W-1(V893_D-1) removing vertex G:W-1(V893_D-1) was concatenated into GCTCATCAG:W2(V885_D-1) Want to move edge Edge(893->894,w:2.0)(G:W-1(V893_D-1)->C:W-1(V894_D-1)) to (GCTCATCAG:W2(V885_D-1)->C:W-1(V894_D-1) adding edge: GCTCATCAG:W2(V885_D-1) to C:W-1(V894_D-1) removing edge Edge(893->894,w:2.0)(G:W-1(V893_D-1)->C:W-1(V894_D-1)) removing edge Edge(885->893,w:2.0)(GCTCATCAG:W2(V885_D-1)->G:W-1(V893_D-1)) Found potential edge: Edge(885->894,w:2.0) between GCTCATCAG:W2(V885_D-1) and C:W-1(V894_D-1) removing vertex C:W-1(V894_D-1) was concatenated into GCTCATCAGC:W2(V885_D-1) Want to move edge Edge(894->895,w:2.0)(C:W-1(V894_D-1)->A:W-1(V895_D-1)) to (GCTCATCAGC:W2(V885_D-1)->A:W-1(V895_D-1) adding edge: GCTCATCAGC:W2(V885_D-1) to A:W-1(V895_D-1) removing edge Edge(894->895,w:2.0)(C:W-1(V894_D-1)->A:W-1(V895_D-1)) removing edge Edge(885->894,w:2.0)(GCTCATCAGC:W2(V885_D-1)->C:W-1(V894_D-1)) Found potential edge: Edge(885->895,w:2.0) between GCTCATCAGC:W2(V885_D-1) and A:W-1(V895_D-1) removing vertex A:W-1(V895_D-1) was concatenated into GCTCATCAGCA:W2(V885_D-1) Want to move edge Edge(895->896,w:2.0)(A:W-1(V895_D-1)->A:W-1(V896_D-1)) to (GCTCATCAGCA:W2(V885_D-1)->A:W-1(V896_D-1) adding edge: GCTCATCAGCA:W2(V885_D-1) to A:W-1(V896_D-1) removing edge Edge(895->896,w:2.0)(A:W-1(V895_D-1)->A:W-1(V896_D-1)) removing edge Edge(885->895,w:2.0)(GCTCATCAGCA:W2(V885_D-1)->A:W-1(V895_D-1)) Found potential edge: Edge(885->896,w:2.0) between GCTCATCAGCA:W2(V885_D-1) and A:W-1(V896_D-1) removing vertex A:W-1(V896_D-1) was concatenated into GCTCATCAGCAA:W2(V885_D-1) Want to move edge Edge(896->897,w:2.0)(A:W-1(V896_D-1)->G:W-1(V897_D-1)) to (GCTCATCAGCAA:W2(V885_D-1)->G:W-1(V897_D-1) adding edge: GCTCATCAGCAA:W2(V885_D-1) to G:W-1(V897_D-1) removing edge Edge(896->897,w:2.0)(A:W-1(V896_D-1)->G:W-1(V897_D-1)) removing edge Edge(885->896,w:2.0)(GCTCATCAGCAA:W2(V885_D-1)->A:W-1(V896_D-1)) Found potential edge: Edge(885->897,w:2.0) between GCTCATCAGCAA:W2(V885_D-1) and G:W-1(V897_D-1) removing vertex G:W-1(V897_D-1) was concatenated into GCTCATCAGCAAG:W2(V885_D-1) Want to move edge Edge(897->898,w:2.0)(G:W-1(V897_D-1)->A:W-1(V898_D-1)) to (GCTCATCAGCAAG:W2(V885_D-1)->A:W-1(V898_D-1) adding edge: GCTCATCAGCAAG:W2(V885_D-1) to A:W-1(V898_D-1) removing edge Edge(897->898,w:2.0)(G:W-1(V897_D-1)->A:W-1(V898_D-1)) removing edge Edge(885->897,w:2.0)(GCTCATCAGCAAG:W2(V885_D-1)->G:W-1(V897_D-1)) Found potential edge: Edge(885->898,w:2.0) between GCTCATCAGCAAG:W2(V885_D-1) and A:W-1(V898_D-1) removing vertex A:W-1(V898_D-1) was concatenated into GCTCATCAGCAAGA:W2(V885_D-1) Want to move edge Edge(898->899,w:2.0)(A:W-1(V898_D-1)->A:W-1(V899_D-1)) to (GCTCATCAGCAAGA:W2(V885_D-1)->A:W-1(V899_D-1) adding edge: GCTCATCAGCAAGA:W2(V885_D-1) to A:W-1(V899_D-1) removing edge Edge(898->899,w:2.0)(A:W-1(V898_D-1)->A:W-1(V899_D-1)) removing edge Edge(885->898,w:2.0)(GCTCATCAGCAAGA:W2(V885_D-1)->A:W-1(V898_D-1)) Found potential edge: Edge(885->899,w:2.0) between GCTCATCAGCAAGA:W2(V885_D-1) and A:W-1(V899_D-1) removing vertex A:W-1(V899_D-1) was concatenated into GCTCATCAGCAAGAA:W2(V885_D-1) Want to move edge Edge(899->900,w:2.0)(A:W-1(V899_D-1)->G:W-1(V900_D-1)) to (GCTCATCAGCAAGAA:W2(V885_D-1)->G:W-1(V900_D-1) adding edge: GCTCATCAGCAAGAA:W2(V885_D-1) to G:W-1(V900_D-1) removing edge Edge(899->900,w:2.0)(A:W-1(V899_D-1)->G:W-1(V900_D-1)) removing edge Edge(885->899,w:2.0)(GCTCATCAGCAAGAA:W2(V885_D-1)->A:W-1(V899_D-1)) Found potential edge: Edge(885->900,w:2.0) between GCTCATCAGCAAGAA:W2(V885_D-1) and G:W-1(V900_D-1) removing vertex G:W-1(V900_D-1) was concatenated into GCTCATCAGCAAGAAG:W2(V885_D-1) Want to move edge Edge(900->901,w:2.0)(G:W-1(V900_D-1)->A:W-1(V901_D-1)) to (GCTCATCAGCAAGAAG:W2(V885_D-1)->A:W-1(V901_D-1) adding edge: GCTCATCAGCAAGAAG:W2(V885_D-1) to A:W-1(V901_D-1) removing edge Edge(900->901,w:2.0)(G:W-1(V900_D-1)->A:W-1(V901_D-1)) removing edge Edge(885->900,w:2.0)(GCTCATCAGCAAGAAG:W2(V885_D-1)->G:W-1(V900_D-1)) Found potential edge: Edge(885->901,w:2.0) between GCTCATCAGCAAGAAG:W2(V885_D-1) and A:W-1(V901_D-1) removing vertex A:W-1(V901_D-1) was concatenated into GCTCATCAGCAAGAAGA:W2(V885_D-1) Want to move edge Edge(901->902,w:2.0)(A:W-1(V901_D-1)->A:W-1(V902_D-1)) to (GCTCATCAGCAAGAAGA:W2(V885_D-1)->A:W-1(V902_D-1) adding edge: GCTCATCAGCAAGAAGA:W2(V885_D-1) to A:W-1(V902_D-1) removing edge Edge(901->902,w:2.0)(A:W-1(V901_D-1)->A:W-1(V902_D-1)) removing edge Edge(885->901,w:2.0)(GCTCATCAGCAAGAAGA:W2(V885_D-1)->A:W-1(V901_D-1)) Found potential edge: Edge(885->902,w:2.0) between GCTCATCAGCAAGAAGA:W2(V885_D-1) and A:W-1(V902_D-1) removing vertex A:W-1(V902_D-1) was concatenated into GCTCATCAGCAAGAAGAA:W2(V885_D-1) Want to move edge Edge(902->903,w:2.0)(A:W-1(V902_D-1)->A:W-1(V903_D-1)) to (GCTCATCAGCAAGAAGAA:W2(V885_D-1)->A:W-1(V903_D-1) adding edge: GCTCATCAGCAAGAAGAA:W2(V885_D-1) to A:W-1(V903_D-1) removing edge Edge(902->903,w:2.0)(A:W-1(V902_D-1)->A:W-1(V903_D-1)) removing edge Edge(885->902,w:2.0)(GCTCATCAGCAAGAAGAA:W2(V885_D-1)->A:W-1(V902_D-1)) Found potential edge: Edge(885->903,w:2.0) between GCTCATCAGCAAGAAGAA:W2(V885_D-1) and A:W-1(V903_D-1) removing vertex A:W-1(V903_D-1) was concatenated into GCTCATCAGCAAGAAGAAA:W2(V885_D-1) Want to move edge Edge(903->904,w:2.0)(A:W-1(V903_D-1)->T:W-1(V904_D-1)) to (GCTCATCAGCAAGAAGAAA:W2(V885_D-1)->T:W-1(V904_D-1) adding edge: GCTCATCAGCAAGAAGAAA:W2(V885_D-1) to T:W-1(V904_D-1) removing edge Edge(903->904,w:2.0)(A:W-1(V903_D-1)->T:W-1(V904_D-1)) removing edge Edge(885->903,w:2.0)(GCTCATCAGCAAGAAGAAA:W2(V885_D-1)->A:W-1(V903_D-1)) Found potential edge: Edge(885->904,w:2.0) between GCTCATCAGCAAGAAGAAA:W2(V885_D-1) and T:W-1(V904_D-1) removing vertex T:W-1(V904_D-1) was concatenated into GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) Want to move edge Edge(904->905,w:2.0)(T:W-1(V904_D-1)->C:W-1(V905_D-1)) to (GCTCATCAGCAAGAAGAAAT:W2(V885_D-1)->C:W-1(V905_D-1) adding edge: GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) to C:W-1(V905_D-1) removing edge Edge(904->905,w:2.0)(T:W-1(V904_D-1)->C:W-1(V905_D-1)) removing edge Edge(885->904,w:2.0)(GCTCATCAGCAAGAAGAAAT:W2(V885_D-1)->T:W-1(V904_D-1)) Found potential edge: Edge(885->905,w:2.0) between GCTCATCAGCAAGAAGAAAT:W2(V885_D-1) and C:W-1(V905_D-1) removing vertex C:W-1(V905_D-1) was concatenated into GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) Want to move edge Edge(905->906,w:2.0)(C:W-1(V905_D-1)->T:W-1(V906_D-1)) to (GCTCATCAGCAAGAAGAAATC:W2(V885_D-1)->T:W-1(V906_D-1) adding edge: GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) to T:W-1(V906_D-1) removing edge Edge(905->906,w:2.0)(C:W-1(V905_D-1)->T:W-1(V906_D-1)) removing edge Edge(885->905,w:2.0)(GCTCATCAGCAAGAAGAAATC:W2(V885_D-1)->C:W-1(V905_D-1)) Found potential edge: Edge(885->906,w:2.0) between GCTCATCAGCAAGAAGAAATC:W2(V885_D-1) and T:W-1(V906_D-1) removing vertex T:W-1(V906_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) Want to move edge Edge(906->907,w:2.0)(T:W-1(V906_D-1)->T:W-1(V907_D-1)) to (GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1)->T:W-1(V907_D-1) adding edge: GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) to T:W-1(V907_D-1) removing edge Edge(906->907,w:2.0)(T:W-1(V906_D-1)->T:W-1(V907_D-1)) removing edge Edge(885->906,w:2.0)(GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1)->T:W-1(V906_D-1)) Found potential edge: Edge(885->907,w:2.0) between GCTCATCAGCAAGAAGAAATCT:W2(V885_D-1) and T:W-1(V907_D-1) removing vertex T:W-1(V907_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) Want to move edge Edge(907->908,w:2.0)(T:W-1(V907_D-1)->T:W-1(V908_D-1)) to (GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1)->T:W-1(V908_D-1) adding edge: GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) to T:W-1(V908_D-1) removing edge Edge(907->908,w:2.0)(T:W-1(V907_D-1)->T:W-1(V908_D-1)) removing edge Edge(885->907,w:2.0)(GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1)->T:W-1(V907_D-1)) Found potential edge: Edge(885->908,w:2.0) between GCTCATCAGCAAGAAGAAATCTT:W2(V885_D-1) and T:W-1(V908_D-1) removing vertex T:W-1(V908_D-1) was concatenated into GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) Want to move edge Edge(908->440,w:2.0)(T:W-1(V908_D-1)->CTTTCCAAGTA:W8(V440_D-1)) to (GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1)->CTTTCCAAGTA:W8(V440_D-1) adding edge: GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) to CTTTCCAAGTA:W8(V440_D-1) removing edge Edge(908->440,w:2.0)(T:W-1(V908_D-1)->CTTTCCAAGTA:W8(V440_D-1)) removing edge Edge(885->908,w:2.0)(GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1)->T:W-1(V908_D-1)) Found potential edge: Edge(945->946,w:2.0) between AGAATACAAAATGCCTTCCTCCAG:W0(V945_D-1) and C:W-1(V946_D-1) removing vertex C:W-1(V946_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) Want to move edge Edge(946->947,w:2.0)(C:W-1(V946_D-1)->C:W-1(V947_D-1)) to (AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1)->C:W-1(V947_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) to C:W-1(V947_D-1) removing edge Edge(946->947,w:2.0)(C:W-1(V946_D-1)->C:W-1(V947_D-1)) removing edge Edge(945->946,w:2.0)(AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1)->C:W-1(V946_D-1)) Found potential edge: Edge(945->947,w:2.0) between AGAATACAAAATGCCTTCCTCCAGC:W0(V945_D-1) and C:W-1(V947_D-1) removing vertex C:W-1(V947_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) Want to move edge Edge(947->948,w:2.0)(C:W-1(V947_D-1)->T:W-1(V948_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1)->T:W-1(V948_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) to T:W-1(V948_D-1) removing edge Edge(947->948,w:2.0)(C:W-1(V947_D-1)->T:W-1(V948_D-1)) removing edge Edge(945->947,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1)->C:W-1(V947_D-1)) Found potential edge: Edge(945->948,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCC:W0(V945_D-1) and T:W-1(V948_D-1) removing vertex T:W-1(V948_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) Want to move edge Edge(948->949,w:2.0)(T:W-1(V948_D-1)->C:W-1(V949_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1)->C:W-1(V949_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) to C:W-1(V949_D-1) removing edge Edge(948->949,w:2.0)(T:W-1(V948_D-1)->C:W-1(V949_D-1)) removing edge Edge(945->948,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1)->T:W-1(V948_D-1)) Found potential edge: Edge(945->949,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCT:W0(V945_D-1) and C:W-1(V949_D-1) removing vertex C:W-1(V949_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) Want to move edge Edge(949->950,w:2.0)(C:W-1(V949_D-1)->A:W-1(V950_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1)->A:W-1(V950_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) to A:W-1(V950_D-1) removing edge Edge(949->950,w:2.0)(C:W-1(V949_D-1)->A:W-1(V950_D-1)) removing edge Edge(945->949,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1)->C:W-1(V949_D-1)) Found potential edge: Edge(945->950,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTC:W0(V945_D-1) and A:W-1(V950_D-1) removing vertex A:W-1(V950_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) Want to move edge Edge(950->951,w:2.0)(A:W-1(V950_D-1)->T:W-1(V951_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1)->T:W-1(V951_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) to T:W-1(V951_D-1) removing edge Edge(950->951,w:2.0)(A:W-1(V950_D-1)->T:W-1(V951_D-1)) removing edge Edge(945->950,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1)->A:W-1(V950_D-1)) Found potential edge: Edge(945->951,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTCA:W0(V945_D-1) and T:W-1(V951_D-1) removing vertex T:W-1(V951_D-1) was concatenated into AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) Want to move edge Edge(951->952,w:2.0)(T:W-1(V951_D-1)->C:W-1(V952_D-1)) to (AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1)->C:W-1(V952_D-1) adding edge: AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) to C:W-1(V952_D-1) removing edge Edge(951->952,w:2.0)(T:W-1(V951_D-1)->C:W-1(V952_D-1)) removing edge Edge(945->951,w:2.0)(AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1)->T:W-1(V951_D-1)) Found potential edge: Edge(945->952,w:2.0) between AGAATACAAAATGCCTTCCTCCAGCCTCAT:W0(V945_D-1) and C:W-1(V952_D-1) removing vertex C:W-1(V952_D-1) was concatenated into AGAATACAAA...CAGCCTCATC:W0(V945_D-1) Want to move edge Edge(952->953,w:2.0)(C:W-1(V952_D-1)->A:W-1(V953_D-1)) to (AGAATACAAA...CAGCCTCATC:W0(V945_D-1)->A:W-1(V953_D-1) adding edge: AGAATACAAA...CAGCCTCATC:W0(V945_D-1) to A:W-1(V953_D-1) removing edge Edge(952->953,w:2.0)(C:W-1(V952_D-1)->A:W-1(V953_D-1)) removing edge Edge(945->952,w:2.0)(AGAATACAAA...CAGCCTCATC:W0(V945_D-1)->C:W-1(V952_D-1)) Found potential edge: Edge(945->953,w:2.0) between AGAATACAAA...CAGCCTCATC:W0(V945_D-1) and A:W-1(V953_D-1) removing vertex A:W-1(V953_D-1) was concatenated into AGAATACAAA...AGCCTCATCA:W1(V945_D-1) Want to move edge Edge(953->954,w:2.0)(A:W-1(V953_D-1)->G:W-1(V954_D-1)) to (AGAATACAAA...AGCCTCATCA:W1(V945_D-1)->G:W-1(V954_D-1) adding edge: AGAATACAAA...AGCCTCATCA:W1(V945_D-1) to G:W-1(V954_D-1) removing edge Edge(953->954,w:2.0)(A:W-1(V953_D-1)->G:W-1(V954_D-1)) removing edge Edge(945->953,w:2.0)(AGAATACAAA...AGCCTCATCA:W1(V945_D-1)->A:W-1(V953_D-1)) Found potential edge: Edge(945->954,w:2.0) between AGAATACAAA...AGCCTCATCA:W1(V945_D-1) and G:W-1(V954_D-1) removing vertex G:W-1(V954_D-1) was concatenated into AGAATACAAA...GCCTCATCAG:W1(V945_D-1) Want to move edge Edge(954->955,w:2.0)(G:W-1(V954_D-1)->C:W-1(V955_D-1)) to (AGAATACAAA...GCCTCATCAG:W1(V945_D-1)->C:W-1(V955_D-1) adding edge: AGAATACAAA...GCCTCATCAG:W1(V945_D-1) to C:W-1(V955_D-1) removing edge Edge(954->955,w:2.0)(G:W-1(V954_D-1)->C:W-1(V955_D-1)) removing edge Edge(945->954,w:2.0)(AGAATACAAA...GCCTCATCAG:W1(V945_D-1)->G:W-1(V954_D-1)) Found potential edge: Edge(945->955,w:2.0) between AGAATACAAA...GCCTCATCAG:W1(V945_D-1) and C:W-1(V955_D-1) removing vertex C:W-1(V955_D-1) was concatenated into AGAATACAAA...CCTCATCAGC:W1(V945_D-1) Want to move edge Edge(955->956,w:2.0)(C:W-1(V955_D-1)->A:W-1(V956_D-1)) to (AGAATACAAA...CCTCATCAGC:W1(V945_D-1)->A:W-1(V956_D-1) adding edge: AGAATACAAA...CCTCATCAGC:W1(V945_D-1) to A:W-1(V956_D-1) removing edge Edge(955->956,w:2.0)(C:W-1(V955_D-1)->A:W-1(V956_D-1)) removing edge Edge(945->955,w:2.0)(AGAATACAAA...CCTCATCAGC:W1(V945_D-1)->C:W-1(V955_D-1)) Found potential edge: Edge(945->956,w:2.0) between AGAATACAAA...CCTCATCAGC:W1(V945_D-1) and A:W-1(V956_D-1) removing vertex A:W-1(V956_D-1) was concatenated into AGAATACAAA...CTCATCAGCA:W1(V945_D-1) Want to move edge Edge(956->957,w:2.0)(A:W-1(V956_D-1)->G:W-1(V957_D-1)) to (AGAATACAAA...CTCATCAGCA:W1(V945_D-1)->G:W-1(V957_D-1) adding edge: AGAATACAAA...CTCATCAGCA:W1(V945_D-1) to G:W-1(V957_D-1) removing edge Edge(956->957,w:2.0)(A:W-1(V956_D-1)->G:W-1(V957_D-1)) removing edge Edge(945->956,w:2.0)(AGAATACAAA...CTCATCAGCA:W1(V945_D-1)->A:W-1(V956_D-1)) Found potential edge: Edge(945->957,w:2.0) between AGAATACAAA...CTCATCAGCA:W1(V945_D-1) and G:W-1(V957_D-1) removing vertex G:W-1(V957_D-1) was concatenated into AGAATACAAA...TCATCAGCAG:W1(V945_D-1) Want to move edge Edge(957->958,w:2.0)(G:W-1(V957_D-1)->G:W-1(V958_D-1)) to (AGAATACAAA...TCATCAGCAG:W1(V945_D-1)->G:W-1(V958_D-1) adding edge: AGAATACAAA...TCATCAGCAG:W1(V945_D-1) to G:W-1(V958_D-1) removing edge Edge(957->958,w:2.0)(G:W-1(V957_D-1)->G:W-1(V958_D-1)) removing edge Edge(945->957,w:2.0)(AGAATACAAA...TCATCAGCAG:W1(V945_D-1)->G:W-1(V957_D-1)) Found potential edge: Edge(945->958,w:2.0) between AGAATACAAA...TCATCAGCAG:W1(V945_D-1) and G:W-1(V958_D-1) removing vertex G:W-1(V958_D-1) was concatenated into AGAATACAAA...CATCAGCAGG:W1(V945_D-1) Want to move edge Edge(958->959,w:2.0)(G:W-1(V958_D-1)->A:W-1(V959_D-1)) to (AGAATACAAA...CATCAGCAGG:W1(V945_D-1)->A:W-1(V959_D-1) adding edge: AGAATACAAA...CATCAGCAGG:W1(V945_D-1) to A:W-1(V959_D-1) removing edge Edge(958->959,w:2.0)(G:W-1(V958_D-1)->A:W-1(V959_D-1)) removing edge Edge(945->958,w:2.0)(AGAATACAAA...CATCAGCAGG:W1(V945_D-1)->G:W-1(V958_D-1)) Found potential edge: Edge(945->959,w:2.0) between AGAATACAAA...CATCAGCAGG:W1(V945_D-1) and A:W-1(V959_D-1) removing vertex A:W-1(V959_D-1) was concatenated into AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) Want to move edge Edge(959->960,w:2.0)(A:W-1(V959_D-1)->A:W-1(V960_D-1)) to (AGAATACAAA...ATCAGCAGGA:W1(V945_D-1)->A:W-1(V960_D-1) adding edge: AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) to A:W-1(V960_D-1) removing edge Edge(959->960,w:2.0)(A:W-1(V959_D-1)->A:W-1(V960_D-1)) removing edge Edge(945->959,w:2.0)(AGAATACAAA...ATCAGCAGGA:W1(V945_D-1)->A:W-1(V959_D-1)) Found potential edge: Edge(945->960,w:2.0) between AGAATACAAA...ATCAGCAGGA:W1(V945_D-1) and A:W-1(V960_D-1) removing vertex A:W-1(V960_D-1) was concatenated into AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) Want to move edge Edge(960->961,w:2.0)(A:W-1(V960_D-1)->G:W-1(V961_D-1)) to (AGAATACAAA...TCAGCAGGAA:W1(V945_D-1)->G:W-1(V961_D-1) adding edge: AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) to G:W-1(V961_D-1) removing edge Edge(960->961,w:2.0)(A:W-1(V960_D-1)->G:W-1(V961_D-1)) removing edge Edge(945->960,w:2.0)(AGAATACAAA...TCAGCAGGAA:W1(V945_D-1)->A:W-1(V960_D-1)) Found potential edge: Edge(945->961,w:2.0) between AGAATACAAA...TCAGCAGGAA:W1(V945_D-1) and G:W-1(V961_D-1) removing vertex G:W-1(V961_D-1) was concatenated into AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) Want to move edge Edge(961->962,w:2.0)(G:W-1(V961_D-1)->A:W-1(V962_D-1)) to (AGAATACAAA...CAGCAGGAAG:W1(V945_D-1)->A:W-1(V962_D-1) adding edge: AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) to A:W-1(V962_D-1) removing edge Edge(961->962,w:2.0)(G:W-1(V961_D-1)->A:W-1(V962_D-1)) removing edge Edge(945->961,w:2.0)(AGAATACAAA...CAGCAGGAAG:W1(V945_D-1)->G:W-1(V961_D-1)) Found potential edge: Edge(945->962,w:2.0) between AGAATACAAA...CAGCAGGAAG:W1(V945_D-1) and A:W-1(V962_D-1) removing vertex A:W-1(V962_D-1) was concatenated into AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) Want to move edge Edge(962->963,w:2.0)(A:W-1(V962_D-1)->A:W-1(V963_D-1)) to (AGAATACAAA...AGCAGGAAGA:W1(V945_D-1)->A:W-1(V963_D-1) adding edge: AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) to A:W-1(V963_D-1) removing edge Edge(962->963,w:2.0)(A:W-1(V962_D-1)->A:W-1(V963_D-1)) removing edge Edge(945->962,w:2.0)(AGAATACAAA...AGCAGGAAGA:W1(V945_D-1)->A:W-1(V962_D-1)) Found potential edge: Edge(945->963,w:2.0) between AGAATACAAA...AGCAGGAAGA:W1(V945_D-1) and A:W-1(V963_D-1) removing vertex A:W-1(V963_D-1) was concatenated into AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) Want to move edge Edge(963->964,w:2.0)(A:W-1(V963_D-1)->A:W-1(V964_D-1)) to (AGAATACAAA...GCAGGAAGAA:W1(V945_D-1)->A:W-1(V964_D-1) adding edge: AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) to A:W-1(V964_D-1) removing edge Edge(963->964,w:2.0)(A:W-1(V963_D-1)->A:W-1(V964_D-1)) removing edge Edge(945->963,w:2.0)(AGAATACAAA...GCAGGAAGAA:W1(V945_D-1)->A:W-1(V963_D-1)) Found potential edge: Edge(945->964,w:2.0) between AGAATACAAA...GCAGGAAGAA:W1(V945_D-1) and A:W-1(V964_D-1) removing vertex A:W-1(V964_D-1) was concatenated into AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) Want to move edge Edge(964->965,w:2.0)(A:W-1(V964_D-1)->T:W-1(V965_D-1)) to (AGAATACAAA...CAGGAAGAAA:W1(V945_D-1)->T:W-1(V965_D-1) adding edge: AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) to T:W-1(V965_D-1) removing edge Edge(964->965,w:2.0)(A:W-1(V964_D-1)->T:W-1(V965_D-1)) removing edge Edge(945->964,w:2.0)(AGAATACAAA...CAGGAAGAAA:W1(V945_D-1)->A:W-1(V964_D-1)) Found potential edge: Edge(945->965,w:2.0) between AGAATACAAA...CAGGAAGAAA:W1(V945_D-1) and T:W-1(V965_D-1) removing vertex T:W-1(V965_D-1) was concatenated into AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) Want to move edge Edge(965->966,w:2.0)(T:W-1(V965_D-1)->C:W-1(V966_D-1)) to (AGAATACAAA...AGGAAGAAAT:W1(V945_D-1)->C:W-1(V966_D-1) adding edge: AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) to C:W-1(V966_D-1) removing edge Edge(965->966,w:2.0)(T:W-1(V965_D-1)->C:W-1(V966_D-1)) removing edge Edge(945->965,w:2.0)(AGAATACAAA...AGGAAGAAAT:W1(V945_D-1)->T:W-1(V965_D-1)) Found potential edge: Edge(945->966,w:2.0) between AGAATACAAA...AGGAAGAAAT:W1(V945_D-1) and C:W-1(V966_D-1) removing vertex C:W-1(V966_D-1) was concatenated into AGAATACAAA...GGAAGAAATC:W1(V945_D-1) Want to move edge Edge(966->967,w:2.0)(C:W-1(V966_D-1)->T:W-1(V967_D-1)) to (AGAATACAAA...GGAAGAAATC:W1(V945_D-1)->T:W-1(V967_D-1) adding edge: AGAATACAAA...GGAAGAAATC:W1(V945_D-1) to T:W-1(V967_D-1) removing edge Edge(966->967,w:2.0)(C:W-1(V966_D-1)->T:W-1(V967_D-1)) removing edge Edge(945->966,w:2.0)(AGAATACAAA...GGAAGAAATC:W1(V945_D-1)->C:W-1(V966_D-1)) Found potential edge: Edge(945->967,w:2.0) between AGAATACAAA...GGAAGAAATC:W1(V945_D-1) and T:W-1(V967_D-1) removing vertex T:W-1(V967_D-1) was concatenated into AGAATACAAA...GAAGAAATCT:W1(V945_D-1) Want to move edge Edge(967->968,w:2.0)(T:W-1(V967_D-1)->T:W-1(V968_D-1)) to (AGAATACAAA...GAAGAAATCT:W1(V945_D-1)->T:W-1(V968_D-1) adding edge: AGAATACAAA...GAAGAAATCT:W1(V945_D-1) to T:W-1(V968_D-1) removing edge Edge(967->968,w:2.0)(T:W-1(V967_D-1)->T:W-1(V968_D-1)) removing edge Edge(945->967,w:2.0)(AGAATACAAA...GAAGAAATCT:W1(V945_D-1)->T:W-1(V967_D-1)) Found potential edge: Edge(945->968,w:2.0) between AGAATACAAA...GAAGAAATCT:W1(V945_D-1) and T:W-1(V968_D-1) removing vertex T:W-1(V968_D-1) was concatenated into AGAATACAAA...AAGAAATCTT:W1(V945_D-1) Want to move edge Edge(968->969,w:2.0)(T:W-1(V968_D-1)->T:W-1(V969_D-1)) to (AGAATACAAA...AAGAAATCTT:W1(V945_D-1)->T:W-1(V969_D-1) adding edge: AGAATACAAA...AAGAAATCTT:W1(V945_D-1) to T:W-1(V969_D-1) removing edge Edge(968->969,w:2.0)(T:W-1(V968_D-1)->T:W-1(V969_D-1)) removing edge Edge(945->968,w:2.0)(AGAATACAAA...AAGAAATCTT:W1(V945_D-1)->T:W-1(V968_D-1)) Found potential edge: Edge(945->969,w:2.0) between AGAATACAAA...AAGAAATCTT:W1(V945_D-1) and T:W-1(V969_D-1) removing vertex T:W-1(V969_D-1) was concatenated into AGAATACAAA...AGAAATCTTT:W1(V945_D-1) Want to move edge Edge(969->970,w:2.0)(T:W-1(V969_D-1)->C:W-1(V970_D-1)) to (AGAATACAAA...AGAAATCTTT:W1(V945_D-1)->C:W-1(V970_D-1) adding edge: AGAATACAAA...AGAAATCTTT:W1(V945_D-1) to C:W-1(V970_D-1) removing edge Edge(969->970,w:2.0)(T:W-1(V969_D-1)->C:W-1(V970_D-1)) removing edge Edge(945->969,w:2.0)(AGAATACAAA...AGAAATCTTT:W1(V945_D-1)->T:W-1(V969_D-1)) Found potential edge: Edge(945->970,w:2.0) between AGAATACAAA...AGAAATCTTT:W1(V945_D-1) and C:W-1(V970_D-1) removing vertex C:W-1(V970_D-1) was concatenated into AGAATACAAA...GAAATCTTTC:W1(V945_D-1) Want to move edge Edge(970->971,w:2.0)(C:W-1(V970_D-1)->T:W-1(V971_D-1)) to (AGAATACAAA...GAAATCTTTC:W1(V945_D-1)->T:W-1(V971_D-1) adding edge: AGAATACAAA...GAAATCTTTC:W1(V945_D-1) to T:W-1(V971_D-1) removing edge Edge(970->971,w:2.0)(C:W-1(V970_D-1)->T:W-1(V971_D-1)) removing edge Edge(945->970,w:2.0)(AGAATACAAA...GAAATCTTTC:W1(V945_D-1)->C:W-1(V970_D-1)) Found potential edge: Edge(945->971,w:2.0) between AGAATACAAA...GAAATCTTTC:W1(V945_D-1) and T:W-1(V971_D-1) removing vertex T:W-1(V971_D-1) was concatenated into AGAATACAAA...AAATCTTTCT:W1(V945_D-1) Want to move edge Edge(971->972,w:2.0)(T:W-1(V971_D-1)->T:W-1(V972_D-1)) to (AGAATACAAA...AAATCTTTCT:W1(V945_D-1)->T:W-1(V972_D-1) adding edge: AGAATACAAA...AAATCTTTCT:W1(V945_D-1) to T:W-1(V972_D-1) removing edge Edge(971->972,w:2.0)(T:W-1(V971_D-1)->T:W-1(V972_D-1)) removing edge Edge(945->971,w:2.0)(AGAATACAAA...AAATCTTTCT:W1(V945_D-1)->T:W-1(V971_D-1)) Found potential edge: Edge(945->972,w:2.0) between AGAATACAAA...AAATCTTTCT:W1(V945_D-1) and T:W-1(V972_D-1) removing vertex T:W-1(V972_D-1) was concatenated into AGAATACAAA...AATCTTTCTT:W1(V945_D-1) Want to move edge Edge(972->973,w:2.0)(T:W-1(V972_D-1)->T:W-1(V973_D-1)) to (AGAATACAAA...AATCTTTCTT:W1(V945_D-1)->T:W-1(V973_D-1) adding edge: AGAATACAAA...AATCTTTCTT:W1(V945_D-1) to T:W-1(V973_D-1) removing edge Edge(972->973,w:2.0)(T:W-1(V972_D-1)->T:W-1(V973_D-1)) removing edge Edge(945->972,w:2.0)(AGAATACAAA...AATCTTTCTT:W1(V945_D-1)->T:W-1(V972_D-1)) Found potential edge: Edge(945->973,w:2.0) between AGAATACAAA...AATCTTTCTT:W1(V945_D-1) and T:W-1(V973_D-1) removing vertex T:W-1(V973_D-1) was concatenated into AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) Want to move edge Edge(973->974,w:2.0)(T:W-1(V973_D-1)->C:W-1(V974_D-1)) to (AGAATACAAA...ATCTTTCTTT:W1(V945_D-1)->C:W-1(V974_D-1) adding edge: AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) to C:W-1(V974_D-1) removing edge Edge(973->974,w:2.0)(T:W-1(V973_D-1)->C:W-1(V974_D-1)) removing edge Edge(945->973,w:2.0)(AGAATACAAA...ATCTTTCTTT:W1(V945_D-1)->T:W-1(V973_D-1)) Found potential edge: Edge(945->974,w:2.0) between AGAATACAAA...ATCTTTCTTT:W1(V945_D-1) and C:W-1(V974_D-1) removing vertex C:W-1(V974_D-1) was concatenated into AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) Want to move edge Edge(974->975,w:2.0)(C:W-1(V974_D-1)->C:W-1(V975_D-1)) to (AGAATACAAA...TCTTTCTTTC:W1(V945_D-1)->C:W-1(V975_D-1) adding edge: AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) to C:W-1(V975_D-1) removing edge Edge(974->975,w:2.0)(C:W-1(V974_D-1)->C:W-1(V975_D-1)) removing edge Edge(945->974,w:2.0)(AGAATACAAA...TCTTTCTTTC:W1(V945_D-1)->C:W-1(V974_D-1)) Found potential edge: Edge(945->975,w:2.0) between AGAATACAAA...TCTTTCTTTC:W1(V945_D-1) and C:W-1(V975_D-1) removing vertex C:W-1(V975_D-1) was concatenated into AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) Want to move edge Edge(975->976,w:2.0)(C:W-1(V975_D-1)->A:W-1(V976_D-1)) to (AGAATACAAA...CTTTCTTTCC:W1(V945_D-1)->A:W-1(V976_D-1) adding edge: AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) to A:W-1(V976_D-1) removing edge Edge(975->976,w:2.0)(C:W-1(V975_D-1)->A:W-1(V976_D-1)) removing edge Edge(945->975,w:2.0)(AGAATACAAA...CTTTCTTTCC:W1(V945_D-1)->C:W-1(V975_D-1)) Found potential edge: Edge(945->976,w:2.0) between AGAATACAAA...CTTTCTTTCC:W1(V945_D-1) and A:W-1(V976_D-1) removing vertex A:W-1(V976_D-1) was concatenated into AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) Want to move edge Edge(976->977,w:2.0)(A:W-1(V976_D-1)->A:W-1(V977_D-1)) to (AGAATACAAA...TTTCTTTCCA:W1(V945_D-1)->A:W-1(V977_D-1) adding edge: AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) to A:W-1(V977_D-1) removing edge Edge(976->977,w:2.0)(A:W-1(V976_D-1)->A:W-1(V977_D-1)) removing edge Edge(945->976,w:2.0)(AGAATACAAA...TTTCTTTCCA:W1(V945_D-1)->A:W-1(V976_D-1)) Found potential edge: Edge(945->977,w:2.0) between AGAATACAAA...TTTCTTTCCA:W1(V945_D-1) and A:W-1(V977_D-1) removing vertex A:W-1(V977_D-1) was concatenated into AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) Want to move edge Edge(977->978,w:2.0)(A:W-1(V977_D-1)->G:W-1(V978_D-1)) to (AGAATACAAA...TTCTTTCCAA:W1(V945_D-1)->G:W-1(V978_D-1) adding edge: AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) to G:W-1(V978_D-1) removing edge Edge(977->978,w:2.0)(A:W-1(V977_D-1)->G:W-1(V978_D-1)) removing edge Edge(945->977,w:2.0)(AGAATACAAA...TTCTTTCCAA:W1(V945_D-1)->A:W-1(V977_D-1)) Found potential edge: Edge(945->978,w:2.0) between AGAATACAAA...TTCTTTCCAA:W1(V945_D-1) and G:W-1(V978_D-1) removing vertex G:W-1(V978_D-1) was concatenated into AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) Want to move edge Edge(978->979,w:2.0)(G:W-1(V978_D-1)->T:W-1(V979_D-1)) to (AGAATACAAA...TCTTTCCAAG:W1(V945_D-1)->T:W-1(V979_D-1) adding edge: AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) to T:W-1(V979_D-1) removing edge Edge(978->979,w:2.0)(G:W-1(V978_D-1)->T:W-1(V979_D-1)) removing edge Edge(945->978,w:2.0)(AGAATACAAA...TCTTTCCAAG:W1(V945_D-1)->G:W-1(V978_D-1)) Found potential edge: Edge(945->979,w:2.0) between AGAATACAAA...TCTTTCCAAG:W1(V945_D-1) and T:W-1(V979_D-1) removing vertex T:W-1(V979_D-1) was concatenated into AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) Want to move edge Edge(979->980,w:2.0)(T:W-1(V979_D-1)->A:W-1(V980_D-1)) to (AGAATACAAA...CTTTCCAAGT:W1(V945_D-1)->A:W-1(V980_D-1) adding edge: AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) to A:W-1(V980_D-1) removing edge Edge(979->980,w:2.0)(T:W-1(V979_D-1)->A:W-1(V980_D-1)) removing edge Edge(945->979,w:2.0)(AGAATACAAA...CTTTCCAAGT:W1(V945_D-1)->T:W-1(V979_D-1)) Found potential edge: Edge(945->980,w:2.0) between AGAATACAAA...CTTTCCAAGT:W1(V945_D-1) and A:W-1(V980_D-1) removing vertex A:W-1(V980_D-1) was concatenated into AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) Want to move edge Edge(980->451,w:2.0)(A:W-1(V980_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)) to (AGAATACAAA...TTTCCAAGTA:W1(V945_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) adding edge: AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) to GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) removing edge Edge(980->451,w:2.0)(A:W-1(V980_D-1)->GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1)) removing edge Edge(945->980,w:2.0)(AGAATACAAA...TTTCCAAGTA:W1(V945_D-1)->A:W-1(V980_D-1)) ## Node descriptions after linear compaction: ## Node descriptions: GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) ] CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) ] Succ: [CTTTCCAAGTA:W8(V440_D-1) ] CTTTCCAAGTA:W8(V440_D-1) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D-1) GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) Preds: [AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) CTTTCCAAGTA:W8(V440_D-1) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) ] GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D-1) CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) ] AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] Succ: [] GCTAGGGGAA...GGGAGCCACC:W1(V786_D-1) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D-1) ] CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D-1) ] GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D-1) ] Succ: [CTTTCCAAGTA:W8(V440_D-1) ] AGAATACAAA...TTTCCAAGTA:W1(V945_D-1) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D-1) ] SNP_collapse candidates: GAGCACTCTGAACCCTGTGAGGCA:W6(V525_D2) len: 24 and CAGCACTCTGAACCCTGTGAGGCA:W2(V813_D2) len: 24 SNP_collapse: merging the node 813 to the node 525 SNP_collapse candidates: CCTCATCAGCAAGAAGAAATCTTT:W7(V416_D1) len: 24 and GCTCATCAGCAAGAAGAAATCTTT:W2(V885_D1) len: 24 SNP_collapse: merging the node 885 to the node 416 removing the single nt variation vertex 813 removing the single nt variation vertex 525 removing the single nt variation vertex 885 removing the single nt variation vertex 416 SECTION ==================== Removing small components. ==================== ComponentDivision: 0 contains the following vertices: node_id: 945 node_id: 786 node_id: 451 node_id: 981 node_id: 549 node_id: 982 node_id: 440 node_id: 380 node_id: 717 SubComp: 945 has 9 nodes; total coverage: 2212 average: 4.3118906 number of good components: 1 adding to 380: Location of original node 380 in index 0 adding to 381: Location of original node 380 in index 1 adding to 382: Location of original node 380 in index 2 adding to 383: Location of original node 380 in index 3 adding to 384: Location of original node 380 in index 4 adding to 385: Location of original node 380 in index 5 adding to 386: Location of original node 380 in index 6 adding to 387: Location of original node 380 in index 7 adding to 388: Location of original node 380 in index 8 adding to 389: Location of original node 380 in index 9 adding to 390: Location of original node 380 in index 10 adding to 391: Location of original node 380 in index 11 adding to 392: Location of original node 380 in index 12 adding to 393: Location of original node 380 in index 13 adding to 394: Location of original node 380 in index 14 adding to 395: Location of original node 380 in index 15 adding to 396: Location of original node 380 in index 16 adding to 397: Location of original node 380 in index 17 adding to 398: Location of original node 380 in index 18 adding to 399: Location of original node 380 in index 19 adding to 400: Location of original node 380 in index 20 adding to 401: Location of original node 380 in index 21 adding to 402: Location of original node 380 in index 22 adding to 403: Location of original node 380 in index 23 adding to 404: Location of original node 380 in index 24 adding to 405: Location of original node 380 in index 25 adding to 406: Location of original node 380 in index 26 adding to 407: Location of original node 380 in index 27 adding to 408: Location of original node 380 in index 28 adding to 409: Location of original node 380 in index 29 adding to 410: Location of original node 380 in index 30 adding to 411: Location of original node 380 in index 31 adding to 412: Location of original node 380 in index 32 adding to 413: Location of original node 380 in index 33 adding to 414: Location of original node 380 in index 34 adding to 415: Location of original node 380 in index 35 adding to 440: Location of original node 440 in index 0 adding to 441: Location of original node 440 in index 1 adding to 442: Location of original node 440 in index 2 adding to 443: Location of original node 440 in index 3 adding to 444: Location of original node 440 in index 4 adding to 445: Location of original node 440 in index 5 adding to 446: Location of original node 440 in index 6 adding to 447: Location of original node 440 in index 7 adding to 448: Location of original node 440 in index 8 adding to 449: Location of original node 440 in index 9 adding to 450: Location of original node 440 in index 10 adding to 451: Location of original node 451 in index 0 adding to 452: Location of original node 451 in index 1 adding to 453: Location of original node 451 in index 2 adding to 454: Location of original node 451 in index 3 adding to 455: Location of original node 451 in index 4 adding to 456: Location of original node 451 in index 5 adding to 457: Location of original node 451 in index 6 adding to 458: Location of original node 451 in index 7 adding to 459: Location of original node 451 in index 8 adding to 460: Location of original node 451 in index 9 adding to 461: Location of original node 451 in index 10 adding to 462: Location of original node 451 in index 11 adding to 463: Location of original node 451 in index 12 adding to 464: Location of original node 451 in index 13 adding to 465: Location of original node 451 in index 14 adding to 466: Location of original node 451 in index 15 adding to 467: Location of original node 451 in index 16 adding to 468: Location of original node 451 in index 17 adding to 469: Location of original node 451 in index 18 adding to 470: Location of original node 451 in index 19 adding to 471: Location of original node 451 in index 20 adding to 472: Location of original node 451 in index 21 adding to 473: Location of original node 451 in index 22 adding to 474: Location of original node 451 in index 23 adding to 475: Location of original node 451 in index 24 adding to 476: Location of original node 451 in index 25 adding to 477: Location of original node 451 in index 26 adding to 478: Location of original node 451 in index 27 adding to 479: Location of original node 451 in index 28 adding to 480: Location of original node 451 in index 29 adding to 481: Location of original node 451 in index 30 adding to 482: Location of original node 451 in index 31 adding to 483: Location of original node 451 in index 32 adding to 484: Location of original node 451 in index 33 adding to 485: Location of original node 451 in index 34 adding to 486: Location of original node 451 in index 35 adding to 487: Location of original node 451 in index 36 adding to 488: Location of original node 451 in index 37 adding to 489: Location of original node 451 in index 38 adding to 490: Location of original node 451 in index 39 adding to 491: Location of original node 451 in index 40 adding to 492: Location of original node 451 in index 41 adding to 493: Location of original node 451 in index 42 adding to 494: Location of original node 451 in index 43 adding to 495: Location of original node 451 in index 44 adding to 496: Location of original node 451 in index 45 adding to 497: Location of original node 451 in index 46 adding to 498: Location of original node 451 in index 47 adding to 499: Location of original node 451 in index 48 adding to 500: Location of original node 451 in index 49 adding to 501: Location of original node 451 in index 50 adding to 502: Location of original node 451 in index 51 adding to 503: Location of original node 451 in index 52 adding to 504: Location of original node 451 in index 53 adding to 505: Location of original node 451 in index 54 adding to 506: Location of original node 451 in index 55 adding to 507: Location of original node 451 in index 56 adding to 508: Location of original node 451 in index 57 adding to 509: Location of original node 451 in index 58 adding to 510: Location of original node 451 in index 59 adding to 511: Location of original node 451 in index 60 adding to 512: Location of original node 451 in index 61 adding to 513: Location of original node 451 in index 62 adding to 514: Location of original node 451 in index 63 adding to 515: Location of original node 451 in index 64 adding to 516: Location of original node 451 in index 65 adding to 517: Location of original node 451 in index 66 adding to 518: Location of original node 451 in index 67 adding to 519: Location of original node 451 in index 68 adding to 520: Location of original node 451 in index 69 adding to 521: Location of original node 451 in index 70 adding to 522: Location of original node 451 in index 71 adding to 523: Location of original node 451 in index 72 adding to 524: Location of original node 451 in index 73 adding to 549: Location of original node 549 in index 0 adding to 550: Location of original node 549 in index 1 adding to 551: Location of original node 549 in index 2 adding to 552: Location of original node 549 in index 3 adding to 553: Location of original node 549 in index 4 adding to 554: Location of original node 549 in index 5 adding to 555: Location of original node 549 in index 6 adding to 556: Location of original node 549 in index 7 adding to 557: Location of original node 549 in index 8 adding to 558: Location of original node 549 in index 9 adding to 559: Location of original node 549 in index 10 adding to 560: Location of original node 549 in index 11 adding to 561: Location of original node 549 in index 12 adding to 562: Location of original node 549 in index 13 adding to 563: Location of original node 549 in index 14 adding to 564: Location of original node 549 in index 15 adding to 565: Location of original node 549 in index 16 adding to 566: Location of original node 549 in index 17 adding to 567: Location of original node 549 in index 18 adding to 568: Location of original node 549 in index 19 adding to 569: Location of original node 549 in index 20 adding to 570: Location of original node 549 in index 21 adding to 571: Location of original node 549 in index 22 adding to 572: Location of original node 549 in index 23 adding to 573: Location of original node 549 in index 24 adding to 574: Location of original node 549 in index 25 adding to 575: Location of original node 549 in index 26 adding to 576: Location of original node 549 in index 27 adding to 577: Location of original node 549 in index 28 adding to 578: Location of original node 549 in index 29 adding to 579: Location of original node 549 in index 30 adding to 580: Location of original node 549 in index 31 adding to 581: Location of original node 549 in index 32 adding to 582: Location of original node 549 in index 33 adding to 583: Location of original node 549 in index 34 adding to 584: Location of original node 549 in index 35 adding to 585: Location of original node 549 in index 36 adding to 586: Location of original node 549 in index 37 adding to 587: Location of original node 549 in index 38 adding to 588: Location of original node 549 in index 39 adding to 589: Location of original node 549 in index 40 adding to 590: Location of original node 549 in index 41 adding to 591: Location of original node 549 in index 42 adding to 592: Location of original node 549 in index 43 adding to 593: Location of original node 549 in index 44 adding to 594: Location of original node 549 in index 45 adding to 595: Location of original node 549 in index 46 adding to 596: Location of original node 549 in index 47 adding to 597: Location of original node 549 in index 48 adding to 598: Location of original node 549 in index 49 adding to 599: Location of original node 549 in index 50 adding to 600: Location of original node 549 in index 51 adding to 601: Location of original node 549 in index 52 adding to 602: Location of original node 549 in index 53 adding to 603: Location of original node 549 in index 54 adding to 604: Location of original node 549 in index 55 adding to 605: Location of original node 549 in index 56 adding to 606: Location of original node 549 in index 57 adding to 607: Location of original node 549 in index 58 adding to 608: Location of original node 549 in index 59 adding to 609: Location of original node 549 in index 60 adding to 610: Location of original node 549 in index 61 adding to 611: Location of original node 549 in index 62 adding to 612: Location of original node 549 in index 63 adding to 613: Location of original node 549 in index 64 adding to 614: Location of original node 549 in index 65 adding to 615: Location of original node 549 in index 66 adding to 616: Location of original node 549 in index 67 adding to 617: Location of original node 549 in index 68 adding to 618: Location of original node 549 in index 69 adding to 619: Location of original node 549 in index 70 adding to 620: Location of original node 549 in index 71 adding to 621: Location of original node 549 in index 72 adding to 622: Location of original node 549 in index 73 adding to 623: Location of original node 549 in index 74 adding to 624: Location of original node 549 in index 75 adding to 625: Location of original node 549 in index 76 adding to 626: Location of original node 549 in index 77 adding to 627: Location of original node 549 in index 78 adding to 628: Location of original node 549 in index 79 adding to 629: Location of original node 549 in index 80 adding to 630: Location of original node 549 in index 81 adding to 631: Location of original node 549 in index 82 adding to 632: Location of original node 549 in index 83 adding to 633: Location of original node 549 in index 84 adding to 634: Location of original node 549 in index 85 adding to 635: Location of original node 549 in index 86 adding to 636: Location of original node 549 in index 87 adding to 637: Location of original node 549 in index 88 adding to 638: Location of original node 549 in index 89 adding to 639: Location of original node 549 in index 90 adding to 640: Location of original node 549 in index 91 adding to 641: Location of original node 549 in index 92 adding to 642: Location of original node 549 in index 93 adding to 643: Location of original node 549 in index 94 adding to 644: Location of original node 549 in index 95 adding to 645: Location of original node 549 in index 96 adding to 646: Location of original node 549 in index 97 adding to 647: Location of original node 549 in index 98 adding to 648: Location of original node 549 in index 99 adding to 649: Location of original node 549 in index 100 adding to 650: Location of original node 549 in index 101 adding to 651: Location of original node 549 in index 102 adding to 652: Location of original node 549 in index 103 adding to 653: Location of original node 549 in index 104 adding to 654: Location of original node 549 in index 105 adding to 655: Location of original node 549 in index 106 adding to 656: Location of original node 549 in index 107 adding to 657: Location of original node 549 in index 108 adding to 658: Location of original node 549 in index 109 adding to 659: Location of original node 549 in index 110 adding to 660: Location of original node 549 in index 111 adding to 661: Location of original node 549 in index 112 adding to 662: Location of original node 549 in index 113 adding to 663: Location of original node 549 in index 114 adding to 664: Location of original node 549 in index 115 adding to 665: Location of original node 549 in index 116 adding to 666: Location of original node 549 in index 117 adding to 667: Location of original node 549 in index 118 adding to 668: Location of original node 549 in index 119 adding to 669: Location of original node 549 in index 120 adding to 670: Location of original node 549 in index 121 adding to 671: Location of original node 549 in index 122 adding to 672: Location of original node 549 in index 123 adding to 673: Location of original node 549 in index 124 adding to 674: Location of original node 549 in index 125 adding to 675: Location of original node 549 in index 126 adding to 676: Location of original node 549 in index 127 adding to 677: Location of original node 549 in index 128 adding to 678: Location of original node 549 in index 129 adding to 679: Location of original node 549 in index 130 adding to 680: Location of original node 549 in index 131 adding to 681: Location of original node 549 in index 132 adding to 682: Location of original node 549 in index 133 adding to 683: Location of original node 549 in index 134 adding to 684: Location of original node 549 in index 135 adding to 685: Location of original node 549 in index 136 adding to 686: Location of original node 549 in index 137 adding to 687: Location of original node 549 in index 138 adding to 688: Location of original node 549 in index 139 adding to 689: Location of original node 549 in index 140 adding to 690: Location of original node 549 in index 141 adding to 691: Location of original node 549 in index 142 adding to 692: Location of original node 549 in index 143 adding to 693: Location of original node 549 in index 144 adding to 694: Location of original node 549 in index 145 adding to 695: Location of original node 549 in index 146 adding to 696: Location of original node 549 in index 147 adding to 697: Location of original node 549 in index 148 adding to 698: Location of original node 549 in index 149 adding to 699: Location of original node 549 in index 150 adding to 700: Location of original node 549 in index 151 adding to 701: Location of original node 549 in index 152 adding to 702: Location of original node 549 in index 153 adding to 703: Location of original node 549 in index 154 adding to 704: Location of original node 549 in index 155 adding to 705: Location of original node 549 in index 156 adding to 706: Location of original node 549 in index 157 adding to 707: Location of original node 549 in index 158 adding to 708: Location of original node 549 in index 159 adding to 709: Location of original node 549 in index 160 adding to 710: Location of original node 549 in index 161 adding to 711: Location of original node 549 in index 162 adding to 712: Location of original node 549 in index 163 adding to 713: Location of original node 549 in index 164 adding to 714: Location of original node 549 in index 165 adding to 715: Location of original node 549 in index 166 adding to 716: Location of original node 549 in index 167 adding to 717: Location of original node 717 in index 0 adding to 718: Location of original node 717 in index 1 adding to 719: Location of original node 717 in index 2 adding to 720: Location of original node 717 in index 3 adding to 721: Location of original node 717 in index 4 adding to 722: Location of original node 717 in index 5 adding to 723: Location of original node 717 in index 6 adding to 724: Location of original node 717 in index 7 adding to 725: Location of original node 717 in index 8 adding to 726: Location of original node 717 in index 9 adding to 727: Location of original node 717 in index 10 adding to 728: Location of original node 717 in index 11 adding to 729: Location of original node 717 in index 12 adding to 730: Location of original node 717 in index 13 adding to 731: Location of original node 717 in index 14 adding to 732: Location of original node 717 in index 15 adding to 733: Location of original node 717 in index 16 adding to 734: Location of original node 717 in index 17 adding to 735: Location of original node 717 in index 18 adding to 736: Location of original node 717 in index 19 adding to 737: Location of original node 717 in index 20 adding to 738: Location of original node 717 in index 21 adding to 739: Location of original node 717 in index 22 adding to 740: Location of original node 717 in index 23 adding to 741: Location of original node 717 in index 24 adding to 742: Location of original node 717 in index 25 adding to 743: Location of original node 717 in index 26 adding to 744: Location of original node 717 in index 27 adding to 745: Location of original node 717 in index 28 adding to 746: Location of original node 717 in index 29 adding to 747: Location of original node 717 in index 30 adding to 748: Location of original node 717 in index 31 adding to 749: Location of original node 717 in index 32 adding to 750: Location of original node 717 in index 33 adding to 751: Location of original node 717 in index 34 adding to 752: Location of original node 717 in index 35 adding to 753: Location of original node 717 in index 36 adding to 754: Location of original node 717 in index 37 adding to 755: Location of original node 717 in index 38 adding to 756: Location of original node 717 in index 39 adding to 757: Location of original node 717 in index 40 adding to 758: Location of original node 717 in index 41 adding to 786: Location of original node 786 in index 0 adding to 787: Location of original node 786 in index 1 adding to 788: Location of original node 786 in index 2 adding to 789: Location of original node 786 in index 3 adding to 790: Location of original node 786 in index 4 adding to 791: Location of original node 786 in index 5 adding to 792: Location of original node 786 in index 6 adding to 793: Location of original node 786 in index 7 adding to 794: Location of original node 786 in index 8 adding to 795: Location of original node 786 in index 9 adding to 796: Location of original node 786 in index 10 adding to 797: Location of original node 786 in index 11 adding to 798: Location of original node 786 in index 12 adding to 799: Location of original node 786 in index 13 adding to 800: Location of original node 786 in index 14 adding to 801: Location of original node 786 in index 15 adding to 802: Location of original node 786 in index 16 adding to 803: Location of original node 786 in index 17 adding to 804: Location of original node 786 in index 18 adding to 805: Location of original node 786 in index 19 adding to 806: Location of original node 786 in index 20 adding to 807: Location of original node 786 in index 21 adding to 808: Location of original node 786 in index 22 adding to 809: Location of original node 786 in index 23 adding to 810: Location of original node 786 in index 24 adding to 811: Location of original node 786 in index 25 adding to 812: Location of original node 786 in index 26 adding to 945: Location of original node 945 in index 0 adding to 946: Location of original node 945 in index 1 adding to 947: Location of original node 945 in index 2 adding to 948: Location of original node 945 in index 3 adding to 949: Location of original node 945 in index 4 adding to 950: Location of original node 945 in index 5 adding to 951: Location of original node 945 in index 6 adding to 952: Location of original node 945 in index 7 adding to 953: Location of original node 945 in index 8 adding to 954: Location of original node 945 in index 9 adding to 955: Location of original node 945 in index 10 adding to 956: Location of original node 945 in index 11 adding to 957: Location of original node 945 in index 12 adding to 958: Location of original node 945 in index 13 adding to 959: Location of original node 945 in index 14 adding to 960: Location of original node 945 in index 15 adding to 961: Location of original node 945 in index 16 adding to 962: Location of original node 945 in index 17 adding to 963: Location of original node 945 in index 18 adding to 964: Location of original node 945 in index 19 adding to 965: Location of original node 945 in index 20 adding to 966: Location of original node 945 in index 21 adding to 967: Location of original node 945 in index 22 adding to 968: Location of original node 945 in index 23 adding to 969: Location of original node 945 in index 24 adding to 970: Location of original node 945 in index 25 adding to 971: Location of original node 945 in index 26 adding to 972: Location of original node 945 in index 27 adding to 973: Location of original node 945 in index 28 adding to 974: Location of original node 945 in index 29 adding to 975: Location of original node 945 in index 30 adding to 976: Location of original node 945 in index 31 adding to 977: Location of original node 945 in index 32 adding to 978: Location of original node 945 in index 33 adding to 979: Location of original node 945 in index 34 adding to 980: Location of original node 945 in index 35 adding to 526: Location of original node 981 in index 0 adding to 527: Location of original node 981 in index 1 adding to 528: Location of original node 981 in index 2 adding to 529: Location of original node 981 in index 3 adding to 530: Location of original node 981 in index 4 adding to 531: Location of original node 981 in index 5 adding to 532: Location of original node 981 in index 6 adding to 533: Location of original node 981 in index 7 adding to 534: Location of original node 981 in index 8 adding to 535: Location of original node 981 in index 9 adding to 536: Location of original node 981 in index 10 adding to 537: Location of original node 981 in index 11 adding to 538: Location of original node 981 in index 12 adding to 539: Location of original node 981 in index 13 adding to 540: Location of original node 981 in index 14 adding to 541: Location of original node 981 in index 15 adding to 542: Location of original node 981 in index 16 adding to 543: Location of original node 981 in index 17 adding to 544: Location of original node 981 in index 18 adding to 545: Location of original node 981 in index 19 adding to 546: Location of original node 981 in index 20 adding to 547: Location of original node 981 in index 21 adding to 548: Location of original node 981 in index 22 adding to 417: Location of original node 982 in index 0 adding to 418: Location of original node 982 in index 1 adding to 419: Location of original node 982 in index 2 adding to 420: Location of original node 982 in index 3 adding to 421: Location of original node 982 in index 4 adding to 422: Location of original node 982 in index 5 adding to 423: Location of original node 982 in index 6 adding to 424: Location of original node 982 in index 7 adding to 425: Location of original node 982 in index 8 adding to 426: Location of original node 982 in index 9 adding to 427: Location of original node 982 in index 10 adding to 428: Location of original node 982 in index 11 adding to 429: Location of original node 982 in index 12 adding to 430: Location of original node 982 in index 13 adding to 431: Location of original node 982 in index 14 adding to 432: Location of original node 982 in index 15 adding to 433: Location of original node 982 in index 16 adding to 434: Location of original node 982 in index 17 adding to 435: Location of original node 982 in index 18 adding to 436: Location of original node 982 in index 19 adding to 437: Location of original node 982 in index 20 adding to 438: Location of original node 982 in index 21 adding to 439: Location of original node 982 in index 22 SECTION ================= Node descriptions before threading. =================== NODE_DESCR: GGCCACACGA...CTTCCTCAAG:W2(V380_D0) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) ] NODE_DESCR: CTTTCCAAGTA:W8(V440_D2) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] NODE_DESCR: GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) Preds: [AGAATACAAA...TTTCCAAGTA:W1(V945_D0) CTTTCCAAGTA:W8(V440_D2) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) ] NODE_DESCR: AGTCCACCAC...GGGAGCCACC:W6(V549_D3) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) ] NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) AGTCCACCAC...GGGAGCCACC:W6(V549_D3) ] Succ: [] NODE_DESCR: GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) ] NODE_DESCR: AGAATACAAA...TTTCCAAGTA:W1(V945_D0) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] NODE_DESCR: GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3) ] NODE_DESCR: CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V380_D0) ] Succ: [CTTTCCAAGTA:W8(V440_D2) ] SECTION ==================== Threading reads through the graph ========================= mapped read [1]Read: >61DFRAAXX100204:1:112:16960:13532/1 0 654 51 705 AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA - Read: 61DFRAAXX100204:1:112:16960:13532 has start: 0, end: 75 and sequence: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA after extracting substring: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 105 Threading read: 61DFRAAXX100204:1:112:16960:13532, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:112:16960:13532 sequence is: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA updatePathRecursively(readName=61DFRAAXX100204:1:112:16960:13532, locInSeq: 0 / 75, locInNode: 105 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:112:16960:13532) AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 105 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 181 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:112:16960:13532 with length: 76 and base [76] ends at position [181] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:112:16960:13532 is [549] with total mm: 0 Read 61DFRAAXX100204:1:112:16960:13532 seq AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:181,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:112:16960:13532 : [549] ReadPath@Init: 61DFRAAXX100204:1:112:16960:13532 : [549] mapped read [2]Read: >61DFRAAXX100204:1:113:7690:4285/2 0 538 51 589 GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG - Read: 61DFRAAXX100204:1:113:7690:4285 has start: 0, end: 75 and sequence: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG after extracting substring: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG findPathInGraph: V:981, with seq: GGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA trying to start the mapping to node 981 at position: 12 Threading read: 61DFRAAXX100204:1:113:7690:4285, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:113:7690:4285 sequence is: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG updatePathRecursively(readName=61DFRAAXX100204:1:113:7690:4285, locInSeq: 0 / 75, locInNode: 12 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:113:7690:4285) GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAA 0 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA 12 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCG 49 |||||||||||||||||||||||||||||||||| Vertex 1 GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA--------------- 35 vertex end gaps: 15 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 34 = mm: 1, div:0.029411765 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:1:113:7690:4285 base [34] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:1:113:7690:4285, locInSeq: 34 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:113:7690:4285) AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 34 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:113:7690:4285 with length: 76 and base [76] ends at position [65] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:1:113:7690:4285 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:113:7690:4285 is [981, 549] with total mm: 1 Read 61DFRAAXX100204:1:113:7690:4285 seq GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [981, 549] positions: [981,nodeEnd:47,readEnd:34] [549,nodeEnd:65,readEnd:76] , trimmed to: [981, 549] Threaded Read as: 61DFRAAXX100204:1:113:7690:4285 : [981, 549] ReadPath@Init: 61DFRAAXX100204:1:113:7690:4285 : [981, 549] mapped read [3]Read: >61DFRAAXX100204:1:115:8211:5116/2 0 473 51 524 AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG - Read: 61DFRAAXX100204:1:115:8211:5116 has start: 0, end: 75 and sequence: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG after extracting substring: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 22 Threading read: 61DFRAAXX100204:1:115:8211:5116, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:115:8211:5116 sequence is: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG updatePathRecursively(readName=61DFRAAXX100204:1:115:8211:5116, locInSeq: 0 / 75, locInNode: 22 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:1:115:8211:5116) AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 22 zipper alignment mm: 0 alignment divergence up to seq pos 75 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:115:8211:5116 base [75] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:1:115:8211:5116, locInSeq: 75 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:115:8211:5116) G 75 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: G 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 24 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:115:8211:5116 with length: 76 and base [76] ends at position [24] within node: 981 totaling 0 mismatches. 61DFRAAXX100204:1:115:8211:5116 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:115:8211:5116 is [451, 981] with total mm: 0 Read 61DFRAAXX100204:1:115:8211:5116 seq AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:75] [981,nodeEnd:24,readEnd:76] , trimmed to: [451, 981] Threaded Read as: 61DFRAAXX100204:1:115:8211:5116 : [451, 981] ReadPath@Init: 61DFRAAXX100204:1:115:8211:5116 : [451, 981] mapped read [4]Read: >61DFRAAXX100204:1:20:5538:6890/2 0 567 51 618 AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT - Read: 61DFRAAXX100204:1:20:5538:6890 has start: 0, end: 75 and sequence: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT after extracting substring: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 18 Threading read: 61DFRAAXX100204:1:20:5538:6890, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:20:5538:6890 sequence is: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT updatePathRecursively(readName=61DFRAAXX100204:1:20:5538:6890, locInSeq: 0 / 75, locInNode: 18 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:20:5538:6890) AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 18 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 94 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:20:5538:6890 with length: 76 and base [76] ends at position [94] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:20:5538:6890 is [549] with total mm: 0 Read 61DFRAAXX100204:1:20:5538:6890 seq AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:94,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:20:5538:6890 : [549] ReadPath@Init: 61DFRAAXX100204:1:20:5538:6890 : [549] mapped read [5]Read: >61DFRAAXX100204:1:39:8793:18196/1 0 380 51 431 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA - Read: 61DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA after extracting substring: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 0 Threading read: 61DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:39:8793:18196 sequence is: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [59] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 59 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) CCTCATCAGCAAGAAGA 59 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [40] within node: 982 totaling 0 mismatches. 61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 380 to : 982 = [982], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982] w/ mm: 0 AND best selected was: [982] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:39:8793:18196 is [380, 982] with total mm: 0 Read 61DFRAAXX100204:1:39:8793:18196 seq GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982] positions: [380,nodeEnd:59,readEnd:59] [982,nodeEnd:40,readEnd:76] , trimmed to: [380, 982] Threaded Read as: 61DFRAAXX100204:1:39:8793:18196 : [380, 982] ReadPath@Init: 61DFRAAXX100204:1:39:8793:18196 : [380, 982] mapped read [6]Read: >61DFRAAXX100204:1:39:8793:18196/2 0 502 51 553 GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA - Read: 61DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA after extracting substring: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 51 Threading read: 61DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:39:8793:18196 sequence is: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 51 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 51 zipper alignment mm: 0 alignment divergence up to seq pos 46 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [46] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 46 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) CAGCACTCTGAACCCTGTGAGGCA 46 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 1 alignment divergence up to seq pos 70 = mm: 1, div:0.014285714 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:1:39:8793:18196 base [70] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:1:39:8793:18196, locInSeq: 70 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:39:8793:18196) AGTCCA 70 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 29 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [29] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 61DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 1 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 1 AND best selected was: [981, 549] w/ mm: 1 FINAL BEST PATH for 61DFRAAXX100204:1:39:8793:18196 is [451, 981, 549] with total mm: 1 Read 61DFRAAXX100204:1:39:8793:18196 seq GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:46] [981,nodeEnd:47,readEnd:70] [549,nodeEnd:29,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: 61DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] ReadPath@Init: 61DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] mapped read [7]Read: >61DFRAAXX100204:1:67:9991:2232/1 0 401 51 452 GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG - Read: 61DFRAAXX100204:1:67:9991:2232 has start: 0, end: 75 and sequence: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG after extracting substring: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 21 Threading read: 61DFRAAXX100204:1:67:9991:2232, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:67:9991:2232 sequence is: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 0 / 75, locInNode: 21 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 21 zipper alignment mm: 0 alignment divergence up to seq pos 38 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [38] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 38 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) CCTCATCAGCAAGAAGAAATCTTT 38 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 62 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [62] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 62 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) CTTTCCAAGTA 62 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 73 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:1:67:9991:2232 base [73] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:1:67:9991:2232, locInSeq: 73 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:1:67:9991:2232) GTG 73 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 26 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:67:9991:2232 with length: 76 and base [76] ends at position [26] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 61DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:1:67:9991:2232 is [380, 982, 440, 451] with total mm: 0 Read 61DFRAAXX100204:1:67:9991:2232 seq GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:38] [982,nodeEnd:47,readEnd:62] [440,nodeEnd:34,readEnd:73] [451,nodeEnd:26,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: 61DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] ReadPath@Init: 61DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] mapped read [8]Read: >61DFRAAXX100204:1:70:1041:1268/1 18 680 25 687 GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG - Read: 61DFRAAXX100204:1:70:1041:1268 has start: 18, end: 49 and sequence: GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG after extracting substring: TGACAGACTCTCTAAGGGACATATGGGAGCTA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 131 Threading read: 61DFRAAXX100204:1:70:1041:1268, length: 32, allowing for 2 max mismatches. Read: 61DFRAAXX100204:1:70:1041:1268 sequence is: TGACAGACTCTCTAAGGGACATATGGGAGCTA updatePathRecursively(readName=61DFRAAXX100204:1:70:1041:1268, locInSeq: 0 / 31, locInNode: 131 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:70:1041:1268) TGACAGACTCTCTAAGGGACATATGGGAGCTA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGACAGACTCTCTAAGGGACATATGGGAGCTA 131 zipper alignment mm: 0 alignment divergence up to seq pos 32 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 163 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:70:1041:1268 with length: 32 and base [32] ends at position [163] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:70:1041:1268 is [549] with total mm: 0 Read 61DFRAAXX100204:1:70:1041:1268 seq TGACAGACTCTCTAAGGGACATATGGGAGCTA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:163,readEnd:32] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:70:1041:1268 : [549] ReadPath@Init: 61DFRAAXX100204:1:70:1041:1268 : [549] mapped read [9]Read: >61DFRAAXX100204:1:85:13720:15251/1 0 639 51 690 TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT - Read: 61DFRAAXX100204:1:85:13720:15251 has start: 0, end: 75 and sequence: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT after extracting substring: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 90 Threading read: 61DFRAAXX100204:1:85:13720:15251, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:1:85:13720:15251 sequence is: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT updatePathRecursively(readName=61DFRAAXX100204:1:85:13720:15251, locInSeq: 0 / 75, locInNode: 90 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:1:85:13720:15251) TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 90 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 166 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:1:85:13720:15251 with length: 76 and base [76] ends at position [166] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:1:85:13720:15251 is [549] with total mm: 0 Read 61DFRAAXX100204:1:85:13720:15251 seq TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:166,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:1:85:13720:15251 : [549] ReadPath@Init: 61DFRAAXX100204:1:85:13720:15251 : [549] mapped read [10]Read: >61DFRAAXX100204:2:13:7749:17373/2 0 413 51 464 ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG - Read: 61DFRAAXX100204:2:13:7749:17373 has start: 0, end: 75 and sequence: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG after extracting substring: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 33 Threading read: 61DFRAAXX100204:2:13:7749:17373, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:13:7749:17373 sequence is: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 0 / 75, locInNode: 33 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) ACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: ACTGGCTACAAACAGACTTCCTCAAG 33 zipper alignment mm: 0 alignment divergence up to seq pos 26 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [26] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 26 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) CCTCATCAGCAAGAAGAAATCTTT 26 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [50] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 50 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) CTTTCCAAGTA 50 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 61 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:13:7749:17373 base [61] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:13:7749:17373, locInSeq: 61 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:13:7749:17373) GTGTCTTAACTCAGG 61 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 38 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:13:7749:17373 with length: 76 and base [76] ends at position [38] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 61DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:13:7749:17373 is [380, 982, 440, 451] with total mm: 0 Read 61DFRAAXX100204:2:13:7749:17373 seq ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:26] [982,nodeEnd:47,readEnd:50] [440,nodeEnd:34,readEnd:61] [451,nodeEnd:38,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: 61DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] ReadPath@Init: 61DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] mapped read [11]Read: >61DFRAAXX100204:2:18:10392:2962/1 0 411 51 462 CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA - Read: 61DFRAAXX100204:2:18:10392:2962 has start: 0, end: 75 and sequence: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA after extracting substring: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 31 Threading read: 61DFRAAXX100204:2:18:10392:2962, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:18:10392:2962 sequence is: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 0 / 75, locInNode: 31 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) CTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: CTACTGGCTACAAACAGACTTCCTCAAG 31 zipper alignment mm: 0 alignment divergence up to seq pos 28 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [28] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 28 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) GCTCATCAGCAAGAAGAAATCTTT 28 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 1 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [52] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 52 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) CTTTCCAAGTA 52 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 1, div:0.015873017 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:18:10392:2962 base [63] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:18:10392:2962, locInSeq: 63 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:18:10392:2962) GTGTCTTAACTCA 63 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:18:10392:2962 with length: 76 and base [76] ends at position [36] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 61DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 1 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 1 AND best selected was: [982, 440, 451] w/ mm: 1 FINAL BEST PATH for 61DFRAAXX100204:2:18:10392:2962 is [380, 982, 440, 451] with total mm: 1 Read 61DFRAAXX100204:2:18:10392:2962 seq CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:28] [982,nodeEnd:47,readEnd:52] [440,nodeEnd:34,readEnd:63] [451,nodeEnd:36,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: 61DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] ReadPath@Init: 61DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] mapped read [12]Read: >61DFRAAXX100204:2:27:5714:7307/1 0 657 51 708 GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG - Read: 61DFRAAXX100204:2:27:5714:7307 has start: 0, end: 75 and sequence: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG after extracting substring: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 108 Threading read: 61DFRAAXX100204:2:27:5714:7307, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:27:5714:7307 sequence is: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG updatePathRecursively(readName=61DFRAAXX100204:2:27:5714:7307, locInSeq: 0 / 75, locInNode: 108 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:27:5714:7307) GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 108 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 184 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:27:5714:7307 with length: 76 and base [76] ends at position [184] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:27:5714:7307 is [549] with total mm: 0 Read 61DFRAAXX100204:2:27:5714:7307 seq GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:184,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:27:5714:7307 : [549] ReadPath@Init: 61DFRAAXX100204:2:27:5714:7307 : [549] mapped read [13]Read: >61DFRAAXX100204:2:33:12784:13782/1 0 606 51 657 TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG - Read: 61DFRAAXX100204:2:33:12784:13782 has start: 0, end: 75 and sequence: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG after extracting substring: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 57 Threading read: 61DFRAAXX100204:2:33:12784:13782, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:33:12784:13782 sequence is: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG updatePathRecursively(readName=61DFRAAXX100204:2:33:12784:13782, locInSeq: 0 / 75, locInNode: 57 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:33:12784:13782) TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 57 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 133 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:33:12784:13782 with length: 76 and base [76] ends at position [133] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:33:12784:13782 is [549] with total mm: 0 Read 61DFRAAXX100204:2:33:12784:13782 seq TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:133,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:33:12784:13782 : [549] ReadPath@Init: 61DFRAAXX100204:2:33:12784:13782 : [549] mapped read [14]Read: >61DFRAAXX100204:2:34:11574:10433/2 0 422 51 473 AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG - Read: 61DFRAAXX100204:2:34:11574:10433 has start: 0, end: 75 and sequence: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG after extracting substring: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG findPathInGraph: V:982, with seq: GGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT trying to start the mapping to node 982 at position: 5 Threading read: 61DFRAAXX100204:2:34:11574:10433, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:34:11574:10433 sequence is: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 0 / 75, locInNode: 5 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTC 0 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT 5 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAA 49 ||||||||||||||||||||||||||||||||||||||||| Vertex 1 CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT-------- 42 vertex end gaps: 8 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 41 = mm: 1, div:0.024390243 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Read61DFRAAXX100204:2:34:11574:10433 base [41] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 41 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) CTTTCCAAGTA 41 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:34:11574:10433 base [52] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:34:11574:10433, locInSeq: 52 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:34:11574:10433) GTGTCTTAACTCAGGAGATCATGG 52 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAGATCATGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:34:11574:10433 with length: 76 and base [76] ends at position [47] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 61DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:34:11574:10433 is [982, 440, 451] with total mm: 1 Read 61DFRAAXX100204:2:34:11574:10433 seq AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [982, 440, 451] positions: [982,nodeEnd:47,readEnd:41] [440,nodeEnd:34,readEnd:52] [451,nodeEnd:47,readEnd:76] , trimmed to: [982, 440, 451] Threaded Read as: 61DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] ReadPath@Init: 61DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] mapped read [15]Read: >61DFRAAXX100204:2:43:2649:2845/2 0 945 51 466 AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG - Read: 61DFRAAXX100204:2:43:2649:2845 has start: 0, end: 75 and sequence: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG after extracting substring: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG findPathInGraph: V:945, with seq: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA trying to start the mapping to node 945 at position: 0 Threading read: 61DFRAAXX100204:2:43:2649:2845, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:43:2649:2845 sequence is: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG updatePathRecursively(readName=61DFRAAXX100204:2:43:2649:2845, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node AGAATACAAA...TTTCCAAGTA:W1(V945_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:43:2649:2845) AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 To VERTEX (AGAATACAAA...TTTCCAAGTA:W1(V945_D0)) SEQ: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:43:2649:2845 base [59] ends at position [59] within node: 945 totaling 0 mismatches. -reached end of vertex: 945, exploring next vertices for continued path extension: [451] Pursuing extension from : AGAATACAAA...TTTCCAAGTA:W1(V945_D0) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 945 to node: 451 updatePathRecursively(readName=61DFRAAXX100204:2:43:2649:2845, locInSeq: 59 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:43:2649:2845) GTGTCTTAACTCAGGAG 59 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:43:2649:2845 with length: 76 and base [76] ends at position [40] within node: 451 totaling 0 mismatches. 61DFRAAXX100204:2:43:2649:2845 best path so far from vertex: 945 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 945 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:43:2649:2845 is [945, 451] with total mm: 0 Read 61DFRAAXX100204:2:43:2649:2845 seq AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [945, 451] positions: [945,nodeEnd:59,readEnd:59] [451,nodeEnd:40,readEnd:76] , trimmed to: [945, 451] Threaded Read as: 61DFRAAXX100204:2:43:2649:2845 : [945, 451] ReadPath@Init: 61DFRAAXX100204:2:43:2649:2845 : [945, 451] mapped read [16]Read: >61DFRAAXX100204:2:47:12270:6103/1 0 631 51 682 CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG - Read: 61DFRAAXX100204:2:47:12270:6103 has start: 0, end: 75 and sequence: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG after extracting substring: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 82 Threading read: 61DFRAAXX100204:2:47:12270:6103, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:47:12270:6103 sequence is: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG updatePathRecursively(readName=61DFRAAXX100204:2:47:12270:6103, locInSeq: 0 / 75, locInNode: 82 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:12270:6103) CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 82 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 158 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:47:12270:6103 with length: 76 and base [76] ends at position [158] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:47:12270:6103 is [549] with total mm: 0 Read 61DFRAAXX100204:2:47:12270:6103 seq CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:158,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:47:12270:6103 : [549] ReadPath@Init: 61DFRAAXX100204:2:47:12270:6103 : [549] mapped read [17]Read: >61DFRAAXX100204:2:47:8841:7694/2 0 504 51 555 AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC - Read: 61DFRAAXX100204:2:47:8841:7694 has start: 0, end: 75 and sequence: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC after extracting substring: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 53 Threading read: 61DFRAAXX100204:2:47:8841:7694, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:47:8841:7694 sequence is: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 0 / 75, locInNode: 53 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 53 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:47:8841:7694 base [44] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 44 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) GAGCACTCTGAACCCTGTGAGGCA 44 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 68 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:47:8841:7694 base [68] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:2:47:8841:7694, locInSeq: 68 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:47:8841:7694) AGTCCACC 68 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 31 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:47:8841:7694 with length: 76 and base [76] ends at position [31] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 61DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:47:8841:7694 is [451, 981, 549] with total mm: 0 Read 61DFRAAXX100204:2:47:8841:7694 seq AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:44] [981,nodeEnd:47,readEnd:68] [549,nodeEnd:31,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: 61DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] ReadPath@Init: 61DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] mapped read [18]Read: >61DFRAAXX100204:2:59:18912:18239/1 0 485 51 536 CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC - Read: 61DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC after extracting substring: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 34 Threading read: 61DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:59:18912:18239 sequence is: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 34 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 34 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:59:18912:18239 base [63] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 63 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) GAGCACTCTGAAC 63 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAAC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [36] within node: 981 totaling 0 mismatches. 61DFRAAXX100204:2:59:18912:18239 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:59:18912:18239 is [451, 981] with total mm: 0 Read 61DFRAAXX100204:2:59:18912:18239 seq CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:63] [981,nodeEnd:36,readEnd:76] , trimmed to: [451, 981] Threaded Read as: 61DFRAAXX100204:2:59:18912:18239 : [451, 981] ReadPath@Init: 61DFRAAXX100204:2:59:18912:18239 : [451, 981] mapped read [19]Read: >61DFRAAXX100204:2:59:18912:18239/2 0 612 51 663 AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC - Read: 61DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC after extracting substring: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 63 Threading read: 61DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:59:18912:18239 sequence is: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC updatePathRecursively(readName=61DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 63 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:59:18912:18239) AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 63 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 139 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [139] within node: 549 totaling 0 mismatches. FINAL BEST PATH for 61DFRAAXX100204:2:59:18912:18239 is [549] with total mm: 0 Read 61DFRAAXX100204:2:59:18912:18239 seq AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:139,readEnd:76] , trimmed to: [549] Threaded Read as: 61DFRAAXX100204:2:59:18912:18239 : [549] ReadPath@Init: 61DFRAAXX100204:2:59:18912:18239 : [549] mapped read [20]Read: >61DFRAAXX100204:2:61:13619:6070/2 0 786 51 741 GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC - Read: 61DFRAAXX100204:2:61:13619:6070 has start: 0, end: 75 and sequence: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC after extracting substring: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC findPathInGraph: V:786, with seq: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 786 at position: 0 Threading read: 61DFRAAXX100204:2:61:13619:6070, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:61:13619:6070 sequence is: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC updatePathRecursively(readName=61DFRAAXX100204:2:61:13619:6070, locInSeq: 0 / 75, locInNode: 0 / 49, totalNumMm: 0 trying to continue the mapping to node GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) -ALIGNING READ SEQ (61DFRAAXX100204:2:61:13619:6070) GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (GCTAGGGGAA...GGGAGCCACC:W1(V786_D0)) SEQ: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 50 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:61:13619:6070 base [50] ends at position [50] within node: 786 totaling 0 mismatches. -reached end of vertex: 786, exploring next vertices for continued path extension: [717] Pursuing extension from : GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 786 to node: 717 updatePathRecursively(readName=61DFRAAXX100204:2:61:13619:6070, locInSeq: 50 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:61:13619:6070) AGCCACAGGTACCTGATGGAAATGCC 50 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 49 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:61:13619:6070 with length: 76 and base [76] ends at position [49] within node: 717 totaling 0 mismatches. 61DFRAAXX100204:2:61:13619:6070 best path so far from vertex: 786 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 786 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:61:13619:6070 is [786, 717] with total mm: 0 Read 61DFRAAXX100204:2:61:13619:6070 seq GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [786, 717] positions: [786,nodeEnd:50,readEnd:50] [717,nodeEnd:49,readEnd:76] , trimmed to: [786, 717] Threaded Read as: 61DFRAAXX100204:2:61:13619:6070 : [786, 717] ReadPath@Init: 61DFRAAXX100204:2:61:13619:6070 : [786, 717] mapped read [21]Read: >61DFRAAXX100204:2:64:15138:21125/1 0 706 51 757 GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA - Read: 61DFRAAXX100204:2:64:15138:21125 has start: 0, end: 75 and sequence: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA after extracting substring: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 157 Threading read: 61DFRAAXX100204:2:64:15138:21125, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:64:15138:21125 sequence is: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA updatePathRecursively(readName=61DFRAAXX100204:2:64:15138:21125, locInSeq: 0 / 75, locInNode: 157 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:64:15138:21125) GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 157 zipper alignment mm: 0 alignment divergence up to seq pos 34 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:64:15138:21125 base [34] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=61DFRAAXX100204:2:64:15138:21125, locInSeq: 34 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:64:15138:21125) AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 34 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:64:15138:21125 with length: 76 and base [76] ends at position [65] within node: 717 totaling 0 mismatches. 61DFRAAXX100204:2:64:15138:21125 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:64:15138:21125 is [549, 717] with total mm: 0 Read 61DFRAAXX100204:2:64:15138:21125 seq GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:34] [717,nodeEnd:65,readEnd:76] , trimmed to: [549, 717] Threaded Read as: 61DFRAAXX100204:2:64:15138:21125 : [549, 717] ReadPath@Init: 61DFRAAXX100204:2:64:15138:21125 : [549, 717] mapped read [22]Read: >61DFRAAXX100204:2:75:16853:12097/1 0 507 51 558 GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC - Read: 61DFRAAXX100204:2:75:16853:12097 has start: 0, end: 75 and sequence: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC after extracting substring: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 56 Threading read: 61DFRAAXX100204:2:75:16853:12097, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:75:16853:12097 sequence is: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 0 / 75, locInNode: 56 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 56 zipper alignment mm: 0 alignment divergence up to seq pos 41 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:75:16853:12097 base [41] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 41 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) GAGCACTCTGAACCCTGTGAGGCA 41 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 65 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:75:16853:12097 base [65] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=61DFRAAXX100204:2:75:16853:12097, locInSeq: 65 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:75:16853:12097) AGTCCACCACC 65 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:75:16853:12097 with length: 76 and base [76] ends at position [34] within node: 549 totaling 0 mismatches. 61DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 61DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:75:16853:12097 is [451, 981, 549] with total mm: 0 Read 61DFRAAXX100204:2:75:16853:12097 seq GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:41] [981,nodeEnd:47,readEnd:65] [549,nodeEnd:34,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: 61DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] ReadPath@Init: 61DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] mapped read [23]Read: >61DFRAAXX100204:2:90:12533:11254/1 0 696 51 747 GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA - Read: 61DFRAAXX100204:2:90:12533:11254 has start: 0, end: 75 and sequence: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA after extracting substring: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 147 Threading read: 61DFRAAXX100204:2:90:12533:11254, length: 76, allowing for 4 max mismatches. Read: 61DFRAAXX100204:2:90:12533:11254 sequence is: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA updatePathRecursively(readName=61DFRAAXX100204:2:90:12533:11254, locInSeq: 0 / 75, locInNode: 147 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (61DFRAAXX100204:2:90:12533:11254) GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 147 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Read61DFRAAXX100204:2:90:12533:11254 base [44] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=61DFRAAXX100204:2:90:12533:11254, locInSeq: 44 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (61DFRAAXX100204:2:90:12533:11254) AGCCACAGGTACCTGATGGAAATGCCGGCTCA 44 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 55 = 0.0 Reached end of read sequence. Read61DFRAAXX100204:2:90:12533:11254 with length: 76 and base [76] ends at position [55] within node: 717 totaling 0 mismatches. 61DFRAAXX100204:2:90:12533:11254 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for 61DFRAAXX100204:2:90:12533:11254 is [549, 717] with total mm: 0 Read 61DFRAAXX100204:2:90:12533:11254 seq GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:44] [717,nodeEnd:55,readEnd:76] , trimmed to: [549, 717] Threaded Read as: 61DFRAAXX100204:2:90:12533:11254 : [549, 717] ReadPath@Init: 61DFRAAXX100204:2:90:12533:11254 : [549, 717] mapped read [24]Read: >r261DFRAAXX100204:1:112:16960:13532/1 0 654 51 705 AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA - Read: r261DFRAAXX100204:1:112:16960:13532 has start: 0, end: 75 and sequence: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA after extracting substring: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 105 Threading read: r261DFRAAXX100204:1:112:16960:13532, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:112:16960:13532 sequence is: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA updatePathRecursively(readName=r261DFRAAXX100204:1:112:16960:13532, locInSeq: 0 / 75, locInNode: 105 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:112:16960:13532) AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA 105 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 181 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:112:16960:13532 with length: 76 and base [76] ends at position [181] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:112:16960:13532 is [549] with total mm: 0 Read r261DFRAAXX100204:1:112:16960:13532 seq AGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:181,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:112:16960:13532 : [549] ReadPath@Init: r261DFRAAXX100204:1:112:16960:13532 : [549] mapped read [25]Read: >r261DFRAAXX100204:1:113:7690:4285/2 0 538 51 589 GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG - Read: r261DFRAAXX100204:1:113:7690:4285 has start: 0, end: 75 and sequence: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG after extracting substring: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG findPathInGraph: V:981, with seq: GGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA trying to start the mapping to node 981 at position: 12 Threading read: r261DFRAAXX100204:1:113:7690:4285, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:113:7690:4285 sequence is: GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG updatePathRecursively(readName=r261DFRAAXX100204:1:113:7690:4285, locInSeq: 0 / 75, locInNode: 12 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:113:7690:4285) GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAA 0 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA 12 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCG 49 |||||||||||||||||||||||||||||||||| Vertex 1 GGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCA--------------- 35 vertex end gaps: 15 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 34 = mm: 1, div:0.029411765 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:1:113:7690:4285 base [34] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:1:113:7690:4285, locInSeq: 34 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:113:7690:4285) AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 34 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:113:7690:4285 with length: 76 and base [76] ends at position [65] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:1:113:7690:4285 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:113:7690:4285 is [981, 549] with total mm: 1 Read r261DFRAAXX100204:1:113:7690:4285 seq GAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [981, 549] positions: [981,nodeEnd:47,readEnd:34] [549,nodeEnd:65,readEnd:76] , trimmed to: [981, 549] Threaded Read as: r261DFRAAXX100204:1:113:7690:4285 : [981, 549] ReadPath@Init: r261DFRAAXX100204:1:113:7690:4285 : [981, 549] mapped read [26]Read: >r261DFRAAXX100204:1:115:8211:5116/2 0 473 51 524 AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG - Read: r261DFRAAXX100204:1:115:8211:5116 has start: 0, end: 75 and sequence: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG after extracting substring: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 22 Threading read: r261DFRAAXX100204:1:115:8211:5116, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:115:8211:5116 sequence is: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG updatePathRecursively(readName=r261DFRAAXX100204:1:115:8211:5116, locInSeq: 0 / 75, locInNode: 22 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:115:8211:5116) AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 22 zipper alignment mm: 0 alignment divergence up to seq pos 75 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:115:8211:5116 base [75] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:1:115:8211:5116, locInSeq: 75 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:115:8211:5116) G 75 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: G 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 24 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:115:8211:5116 with length: 76 and base [76] ends at position [24] within node: 981 totaling 0 mismatches. r261DFRAAXX100204:1:115:8211:5116 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:115:8211:5116 is [451, 981] with total mm: 0 Read r261DFRAAXX100204:1:115:8211:5116 seq AGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:75] [981,nodeEnd:24,readEnd:76] , trimmed to: [451, 981] Threaded Read as: r261DFRAAXX100204:1:115:8211:5116 : [451, 981] ReadPath@Init: r261DFRAAXX100204:1:115:8211:5116 : [451, 981] mapped read [27]Read: >r261DFRAAXX100204:1:20:5538:6890/2 0 567 51 618 AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT - Read: r261DFRAAXX100204:1:20:5538:6890 has start: 0, end: 75 and sequence: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT after extracting substring: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 18 Threading read: r261DFRAAXX100204:1:20:5538:6890, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:20:5538:6890 sequence is: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT updatePathRecursively(readName=r261DFRAAXX100204:1:20:5538:6890, locInSeq: 0 / 75, locInNode: 18 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:20:5538:6890) AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT 18 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 94 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:20:5538:6890 with length: 76 and base [76] ends at position [94] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:20:5538:6890 is [549] with total mm: 0 Read r261DFRAAXX100204:1:20:5538:6890 seq AGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:94,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:20:5538:6890 : [549] ReadPath@Init: r261DFRAAXX100204:1:20:5538:6890 : [549] mapped read [28]Read: >r261DFRAAXX100204:1:39:8793:18196/1 0 380 51 431 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA - Read: r261DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA after extracting substring: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 0 Threading read: r261DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:39:8793:18196 sequence is: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [59] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 59 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) CCTCATCAGCAAGAAGA 59 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [40] within node: 982 totaling 0 mismatches. r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 380 to : 982 = [982], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982] w/ mm: 0 AND best selected was: [982] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:39:8793:18196 is [380, 982] with total mm: 0 Read r261DFRAAXX100204:1:39:8793:18196 seq GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982] positions: [380,nodeEnd:59,readEnd:59] [982,nodeEnd:40,readEnd:76] , trimmed to: [380, 982] Threaded Read as: r261DFRAAXX100204:1:39:8793:18196 : [380, 982] ReadPath@Init: r261DFRAAXX100204:1:39:8793:18196 : [380, 982] mapped read [29]Read: >r261DFRAAXX100204:1:39:8793:18196/2 0 502 51 553 GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA - Read: r261DFRAAXX100204:1:39:8793:18196 has start: 0, end: 75 and sequence: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA after extracting substring: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 51 Threading read: r261DFRAAXX100204:1:39:8793:18196, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:39:8793:18196 sequence is: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 0 / 75, locInNode: 51 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 51 zipper alignment mm: 0 alignment divergence up to seq pos 46 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [46] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 46 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) CAGCACTCTGAACCCTGTGAGGCA 46 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 1 alignment divergence up to seq pos 70 = mm: 1, div:0.014285714 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:1:39:8793:18196 base [70] ends at position [47] within node: 981 totaling 1 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:1:39:8793:18196, locInSeq: 70 / 75, locInNode: 23 / 190, totalNumMm: 1 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:39:8793:18196) AGTCCA 70 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 29 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:39:8793:18196 with length: 76 and base [76] ends at position [29] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 r261DFRAAXX100204:1:39:8793:18196 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 1 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 1 AND best selected was: [981, 549] w/ mm: 1 FINAL BEST PATH for r261DFRAAXX100204:1:39:8793:18196 is [451, 981, 549] with total mm: 1 Read r261DFRAAXX100204:1:39:8793:18196 seq GAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTCAGCACTCTGAACCCTGTGAGGCAAGTCCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:46] [981,nodeEnd:47,readEnd:70] [549,nodeEnd:29,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: r261DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] ReadPath@Init: r261DFRAAXX100204:1:39:8793:18196 : [451, 981, 549] mapped read [30]Read: >r261DFRAAXX100204:1:67:9991:2232/1 0 401 51 452 GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG - Read: r261DFRAAXX100204:1:67:9991:2232 has start: 0, end: 75 and sequence: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG after extracting substring: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 21 Threading read: r261DFRAAXX100204:1:67:9991:2232, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:67:9991:2232 sequence is: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 0 / 75, locInNode: 21 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG 21 zipper alignment mm: 0 alignment divergence up to seq pos 38 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [38] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 38 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) CCTCATCAGCAAGAAGAAATCTTT 38 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 62 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [62] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 62 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) CTTTCCAAGTA 62 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 73 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:1:67:9991:2232 base [73] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:1:67:9991:2232, locInSeq: 73 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:1:67:9991:2232) GTG 73 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 26 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:67:9991:2232 with length: 76 and base [76] ends at position [26] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 r261DFRAAXX100204:1:67:9991:2232 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:1:67:9991:2232 is [380, 982, 440, 451] with total mm: 0 Read r261DFRAAXX100204:1:67:9991:2232 seq GTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:38] [982,nodeEnd:47,readEnd:62] [440,nodeEnd:34,readEnd:73] [451,nodeEnd:26,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: r261DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] ReadPath@Init: r261DFRAAXX100204:1:67:9991:2232 : [380, 982, 440, 451] mapped read [31]Read: >r261DFRAAXX100204:1:70:1041:1268/1 18 680 25 687 GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG - Read: r261DFRAAXX100204:1:70:1041:1268 has start: 18, end: 49 and sequence: GTGACAAAGAAAAGAGGTTGACAGACTCTCTAAGGGACATATGGGAGCTAGATAGAAAGCCCCGAGGAGGTAGCCG after extracting substring: TGACAGACTCTCTAAGGGACATATGGGAGCTA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 131 Threading read: r261DFRAAXX100204:1:70:1041:1268, length: 32, allowing for 2 max mismatches. Read: r261DFRAAXX100204:1:70:1041:1268 sequence is: TGACAGACTCTCTAAGGGACATATGGGAGCTA updatePathRecursively(readName=r261DFRAAXX100204:1:70:1041:1268, locInSeq: 0 / 31, locInNode: 131 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:70:1041:1268) TGACAGACTCTCTAAGGGACATATGGGAGCTA 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGACAGACTCTCTAAGGGACATATGGGAGCTA 131 zipper alignment mm: 0 alignment divergence up to seq pos 32 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 163 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:70:1041:1268 with length: 32 and base [32] ends at position [163] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:70:1041:1268 is [549] with total mm: 0 Read r261DFRAAXX100204:1:70:1041:1268 seq TGACAGACTCTCTAAGGGACATATGGGAGCTA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:163,readEnd:32] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:70:1041:1268 : [549] ReadPath@Init: r261DFRAAXX100204:1:70:1041:1268 : [549] mapped read [32]Read: >r261DFRAAXX100204:1:85:13720:15251/1 0 639 51 690 TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT - Read: r261DFRAAXX100204:1:85:13720:15251 has start: 0, end: 75 and sequence: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT after extracting substring: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 90 Threading read: r261DFRAAXX100204:1:85:13720:15251, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:1:85:13720:15251 sequence is: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT updatePathRecursively(readName=r261DFRAAXX100204:1:85:13720:15251, locInSeq: 0 / 75, locInNode: 90 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:1:85:13720:15251) TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT 90 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 166 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:1:85:13720:15251 with length: 76 and base [76] ends at position [166] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:1:85:13720:15251 is [549] with total mm: 0 Read r261DFRAAXX100204:1:85:13720:15251 seq TGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACAT threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:166,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:1:85:13720:15251 : [549] ReadPath@Init: r261DFRAAXX100204:1:85:13720:15251 : [549] mapped read [33]Read: >r261DFRAAXX100204:2:13:7749:17373/2 0 413 51 464 ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG - Read: r261DFRAAXX100204:2:13:7749:17373 has start: 0, end: 75 and sequence: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG after extracting substring: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 33 Threading read: r261DFRAAXX100204:2:13:7749:17373, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:13:7749:17373 sequence is: ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 0 / 75, locInNode: 33 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) ACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: ACTGGCTACAAACAGACTTCCTCAAG 33 zipper alignment mm: 0 alignment divergence up to seq pos 26 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [26] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 26 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) CCTCATCAGCAAGAAGAAATCTTT 26 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [50] ends at position [47] within node: 982 totaling 0 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 50 / 75, locInNode: 23 / 33, totalNumMm: 0 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) CTTTCCAAGTA 50 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 61 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:13:7749:17373 base [61] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:13:7749:17373, locInSeq: 61 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:13:7749:17373) GTGTCTTAACTCAGG 61 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 38 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:13:7749:17373 with length: 76 and base [76] ends at position [38] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 r261DFRAAXX100204:2:13:7749:17373 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 0 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 0 AND best selected was: [982, 440, 451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:13:7749:17373 is [380, 982, 440, 451] with total mm: 0 Read r261DFRAAXX100204:2:13:7749:17373 seq ACTGGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:26] [982,nodeEnd:47,readEnd:50] [440,nodeEnd:34,readEnd:61] [451,nodeEnd:38,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: r261DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] ReadPath@Init: r261DFRAAXX100204:2:13:7749:17373 : [380, 982, 440, 451] mapped read [34]Read: >r261DFRAAXX100204:2:18:10392:2962/1 0 411 51 462 CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA - Read: r261DFRAAXX100204:2:18:10392:2962 has start: 0, end: 75 and sequence: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA after extracting substring: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA findPathInGraph: V:380, with seq: GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGACTTCCTCAAG trying to start the mapping to node 380 at position: 31 Threading read: r261DFRAAXX100204:2:18:10392:2962, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:18:10392:2962 sequence is: CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 0 / 75, locInNode: 31 / 58, totalNumMm: 0 trying to continue the mapping to node GGCCACACGA...CTTCCTCAAG:W2(V380_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) CTACTGGCTACAAACAGACTTCCTCAAG 0 To VERTEX (GGCCACACGA...CTTCCTCAAG:W2(V380_D0)) SEQ: CTACTGGCTACAAACAGACTTCCTCAAG 31 zipper alignment mm: 0 alignment divergence up to seq pos 28 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [28] ends at position [59] within node: 380 totaling 0 mismatches. -reached end of vertex: 380, exploring next vertices for continued path extension: [982] Pursuing extension from : GGCCACACGA...CTTCCTCAAG:W2(V380_D0) to successors: [CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)] Exploring extension from node: 380 to node: 982 updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 28 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) GCTCATCAGCAAGAAGAAATCTTT 28 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CCTCATCAGCAAGAAGAAATCTTT 23 zipper alignment mm: 1 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [52] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 52 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) CTTTCCAAGTA 52 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 1, div:0.015873017 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:18:10392:2962 base [63] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:18:10392:2962, locInSeq: 63 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:18:10392:2962) GTGTCTTAACTCA 63 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:18:10392:2962 with length: 76 and base [76] ends at position [36] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 r261DFRAAXX100204:2:18:10392:2962 best path so far from vertex: 380 to : 982 = [982, 440, 451], with total mm: 1 Done with exploring paths from vertex: 380 Paths and scores found are: explored path: [982, 440, 451] w/ mm: 1 AND best selected was: [982, 440, 451] w/ mm: 1 FINAL BEST PATH for r261DFRAAXX100204:2:18:10392:2962 is [380, 982, 440, 451] with total mm: 1 Read r261DFRAAXX100204:2:18:10392:2962 seq CTACTGGCTACAAACAGACTTCCTCAAGGCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCA threaded as: PATH_N_MM_COUNT: mismatches=1, path= [380, 982, 440, 451] positions: [380,nodeEnd:59,readEnd:28] [982,nodeEnd:47,readEnd:52] [440,nodeEnd:34,readEnd:63] [451,nodeEnd:36,readEnd:76] , trimmed to: [380, 982, 440, 451] Threaded Read as: r261DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] ReadPath@Init: r261DFRAAXX100204:2:18:10392:2962 : [380, 982, 440, 451] mapped read [35]Read: >r261DFRAAXX100204:2:27:5714:7307/1 0 657 51 708 GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG - Read: r261DFRAAXX100204:2:27:5714:7307 has start: 0, end: 75 and sequence: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG after extracting substring: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 108 Threading read: r261DFRAAXX100204:2:27:5714:7307, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:27:5714:7307 sequence is: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG updatePathRecursively(readName=r261DFRAAXX100204:2:27:5714:7307, locInSeq: 0 / 75, locInNode: 108 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:27:5714:7307) GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG 108 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 184 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:27:5714:7307 with length: 76 and base [76] ends at position [184] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:27:5714:7307 is [549] with total mm: 0 Read r261DFRAAXX100204:2:27:5714:7307 seq GGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:184,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:27:5714:7307 : [549] ReadPath@Init: r261DFRAAXX100204:2:27:5714:7307 : [549] mapped read [36]Read: >r261DFRAAXX100204:2:33:12784:13782/1 0 606 51 657 TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG - Read: r261DFRAAXX100204:2:33:12784:13782 has start: 0, end: 75 and sequence: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG after extracting substring: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 57 Threading read: r261DFRAAXX100204:2:33:12784:13782, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:33:12784:13782 sequence is: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG updatePathRecursively(readName=r261DFRAAXX100204:2:33:12784:13782, locInSeq: 0 / 75, locInNode: 57 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:33:12784:13782) TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG 57 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 133 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:33:12784:13782 with length: 76 and base [76] ends at position [133] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:33:12784:13782 is [549] with total mm: 0 Read r261DFRAAXX100204:2:33:12784:13782 seq TAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:133,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:33:12784:13782 : [549] ReadPath@Init: r261DFRAAXX100204:2:33:12784:13782 : [549] mapped read [37]Read: >r261DFRAAXX100204:2:34:11574:10433/2 0 422 51 473 AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG - Read: r261DFRAAXX100204:2:34:11574:10433 has start: 0, end: 75 and sequence: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG after extracting substring: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG findPathInGraph: V:982, with seq: GGCTACAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT trying to start the mapping to node 982 at position: 5 Threading read: r261DFRAAXX100204:2:34:11574:10433, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:34:11574:10433 sequence is: AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 0 / 75, locInNode: 5 / 46, totalNumMm: 0 trying to continue the mapping to node CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTC 0 To VERTEX (CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1)) SEQ: CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT 5 shortcircuiting the zipper test, too many MM or execeeding local seq divergence *Trying again using full DP alignment: -running Needleman-Wunsch alignment of vertex to read Read 1 -AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAA 49 ||||||||||||||||||||||||||||||||||||||||| Vertex 1 CAAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTT-------- 42 vertex end gaps: 8 read end gaps: 0 mismatches encountered: 1 alignment divergence up to seq pos 41 = mm: 1, div:0.024390243 local vertex alignment divergence = 1 / 47 = 0.021276595 Reached end of node sequence. Readr261DFRAAXX100204:2:34:11574:10433 base [41] ends at position [47] within node: 982 totaling 1 mismatches. -reached end of vertex: 982, exploring next vertices for continued path extension: [440] Pursuing extension from : CCTCATCAGCAAGAAGAAATCTTT:W7(V982_D-1) to successors: [CTTTCCAAGTA:W8(V440_D2)] Exploring extension from node: 982 to node: 440 updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 41 / 75, locInNode: 23 / 33, totalNumMm: 1 trying to continue the mapping to node CTTTCCAAGTA:W8(V440_D2) -ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) CTTTCCAAGTA 41 To VERTEX (CTTTCCAAGTA:W8(V440_D2)) SEQ: CTTTCCAAGTA 23 zipper alignment mm: 0 alignment divergence up to seq pos 52 = mm: 1, div:0.01923077 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:34:11574:10433 base [52] ends at position [34] within node: 440 totaling 0 mismatches. -reached end of vertex: 440, exploring next vertices for continued path extension: [451] Pursuing extension from : CTTTCCAAGTA:W8(V440_D2) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 440 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:34:11574:10433, locInSeq: 52 / 75, locInNode: 23 / 96, totalNumMm: 1 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:34:11574:10433) GTGTCTTAACTCAGGAGATCATGG 52 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAGATCATGG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 1, div:0.013157895 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:34:11574:10433 with length: 76 and base [76] ends at position [47] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 440 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 440 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 r261DFRAAXX100204:2:34:11574:10433 best path so far from vertex: 982 to : 440 = [440, 451], with total mm: 0 Done with exploring paths from vertex: 982 Paths and scores found are: explored path: [440, 451] w/ mm: 0 AND best selected was: [440, 451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:34:11574:10433 is [982, 440, 451] with total mm: 1 Read r261DFRAAXX100204:2:34:11574:10433 seq AAACAGACTTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGG threaded as: PATH_N_MM_COUNT: mismatches=1, path= [982, 440, 451] positions: [982,nodeEnd:47,readEnd:41] [440,nodeEnd:34,readEnd:52] [451,nodeEnd:47,readEnd:76] , trimmed to: [982, 440, 451] Threaded Read as: r261DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] ReadPath@Init: r261DFRAAXX100204:2:34:11574:10433 : [982, 440, 451] mapped read [38]Read: >r261DFRAAXX100204:2:43:2649:2845/2 0 945 51 466 AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG - Read: r261DFRAAXX100204:2:43:2649:2845 has start: 0, end: 75 and sequence: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG after extracting substring: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG findPathInGraph: V:945, with seq: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA trying to start the mapping to node 945 at position: 0 Threading read: r261DFRAAXX100204:2:43:2649:2845, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:43:2649:2845 sequence is: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG updatePathRecursively(readName=r261DFRAAXX100204:2:43:2649:2845, locInSeq: 0 / 75, locInNode: 0 / 58, totalNumMm: 0 trying to continue the mapping to node AGAATACAAA...TTTCCAAGTA:W1(V945_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:43:2649:2845) AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 To VERTEX (AGAATACAAA...TTTCCAAGTA:W1(V945_D0)) SEQ: AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 0 zipper alignment mm: 0 alignment divergence up to seq pos 59 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 59 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:43:2649:2845 base [59] ends at position [59] within node: 945 totaling 0 mismatches. -reached end of vertex: 945, exploring next vertices for continued path extension: [451] Pursuing extension from : AGAATACAAA...TTTCCAAGTA:W1(V945_D0) to successors: [GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)] Exploring extension from node: 945 to node: 451 updatePathRecursively(readName=r261DFRAAXX100204:2:43:2649:2845, locInSeq: 59 / 75, locInNode: 23 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:43:2649:2845) GTGTCTTAACTCAGGAG 59 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GTGTCTTAACTCAGGAG 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 40 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:43:2649:2845 with length: 76 and base [76] ends at position [40] within node: 451 totaling 0 mismatches. r261DFRAAXX100204:2:43:2649:2845 best path so far from vertex: 945 to : 451 = [451], with total mm: 0 Done with exploring paths from vertex: 945 Paths and scores found are: explored path: [451] w/ mm: 0 AND best selected was: [451] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:43:2649:2845 is [945, 451] with total mm: 0 Read r261DFRAAXX100204:2:43:2649:2845 seq AGAATACAAAATGCCTTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [945, 451] positions: [945,nodeEnd:59,readEnd:59] [451,nodeEnd:40,readEnd:76] , trimmed to: [945, 451] Threaded Read as: r261DFRAAXX100204:2:43:2649:2845 : [945, 451] ReadPath@Init: r261DFRAAXX100204:2:43:2649:2845 : [945, 451] mapped read [39]Read: >r261DFRAAXX100204:2:47:12270:6103/1 0 631 51 682 CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG - Read: r261DFRAAXX100204:2:47:12270:6103 has start: 0, end: 75 and sequence: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG after extracting substring: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 82 Threading read: r261DFRAAXX100204:2:47:12270:6103, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:47:12270:6103 sequence is: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG updatePathRecursively(readName=r261DFRAAXX100204:2:47:12270:6103, locInSeq: 0 / 75, locInNode: 82 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:12270:6103) CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG 82 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 158 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:47:12270:6103 with length: 76 and base [76] ends at position [158] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:47:12270:6103 is [549] with total mm: 0 Read r261DFRAAXX100204:2:47:12270:6103 seq CCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGG threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:158,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:47:12270:6103 : [549] ReadPath@Init: r261DFRAAXX100204:2:47:12270:6103 : [549] mapped read [40]Read: >r261DFRAAXX100204:2:47:8841:7694/2 0 504 51 555 AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC - Read: r261DFRAAXX100204:2:47:8841:7694 has start: 0, end: 75 and sequence: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC after extracting substring: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 53 Threading read: r261DFRAAXX100204:2:47:8841:7694, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:47:8841:7694 sequence is: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 0 / 75, locInNode: 53 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 53 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:47:8841:7694 base [44] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 44 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) GAGCACTCTGAACCCTGTGAGGCA 44 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 68 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:47:8841:7694 base [68] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:2:47:8841:7694, locInSeq: 68 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:47:8841:7694) AGTCCACC 68 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 31 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:47:8841:7694 with length: 76 and base [76] ends at position [31] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 r261DFRAAXX100204:2:47:8841:7694 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:47:8841:7694 is [451, 981, 549] with total mm: 0 Read r261DFRAAXX100204:2:47:8841:7694 seq AGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:44] [981,nodeEnd:47,readEnd:68] [549,nodeEnd:31,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: r261DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] ReadPath@Init: r261DFRAAXX100204:2:47:8841:7694 : [451, 981, 549] mapped read [41]Read: >r261DFRAAXX100204:2:59:18912:18239/1 0 485 51 536 CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC - Read: r261DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC after extracting substring: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 34 Threading read: r261DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:59:18912:18239 sequence is: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 34 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 34 zipper alignment mm: 0 alignment divergence up to seq pos 63 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:59:18912:18239 base [63] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 63 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) GAGCACTCTGAAC 63 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAAC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 36 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [36] within node: 981 totaling 0 mismatches. r261DFRAAXX100204:2:59:18912:18239 best path so far from vertex: 451 to : 981 = [981], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981] w/ mm: 0 AND best selected was: [981] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:59:18912:18239 is [451, 981] with total mm: 0 Read r261DFRAAXX100204:2:59:18912:18239 seq CAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981] positions: [451,nodeEnd:97,readEnd:63] [981,nodeEnd:36,readEnd:76] , trimmed to: [451, 981] Threaded Read as: r261DFRAAXX100204:2:59:18912:18239 : [451, 981] ReadPath@Init: r261DFRAAXX100204:2:59:18912:18239 : [451, 981] mapped read [42]Read: >r261DFRAAXX100204:2:59:18912:18239/2 0 612 51 663 AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC - Read: r261DFRAAXX100204:2:59:18912:18239 has start: 0, end: 75 and sequence: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC after extracting substring: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 63 Threading read: r261DFRAAXX100204:2:59:18912:18239, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:59:18912:18239 sequence is: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC updatePathRecursively(readName=r261DFRAAXX100204:2:59:18912:18239, locInSeq: 0 / 75, locInNode: 63 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:59:18912:18239) AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC 63 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 139 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:59:18912:18239 with length: 76 and base [76] ends at position [139] within node: 549 totaling 0 mismatches. FINAL BEST PATH for r261DFRAAXX100204:2:59:18912:18239 is [549] with total mm: 0 Read r261DFRAAXX100204:2:59:18912:18239 seq AGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGAC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549] positions: [549,nodeEnd:139,readEnd:76] , trimmed to: [549] Threaded Read as: r261DFRAAXX100204:2:59:18912:18239 : [549] ReadPath@Init: r261DFRAAXX100204:2:59:18912:18239 : [549] mapped read [43]Read: >r261DFRAAXX100204:2:61:13619:6070/2 0 786 51 741 GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC - Read: r261DFRAAXX100204:2:61:13619:6070 has start: 0, end: 75 and sequence: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC after extracting substring: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC findPathInGraph: V:786, with seq: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 786 at position: 0 Threading read: r261DFRAAXX100204:2:61:13619:6070, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:61:13619:6070 sequence is: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC updatePathRecursively(readName=r261DFRAAXX100204:2:61:13619:6070, locInSeq: 0 / 75, locInNode: 0 / 49, totalNumMm: 0 trying to continue the mapping to node GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) -ALIGNING READ SEQ (r261DFRAAXX100204:2:61:13619:6070) GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (GCTAGGGGAA...GGGAGCCACC:W1(V786_D0)) SEQ: GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACC 0 zipper alignment mm: 0 alignment divergence up to seq pos 50 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 50 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:61:13619:6070 base [50] ends at position [50] within node: 786 totaling 0 mismatches. -reached end of vertex: 786, exploring next vertices for continued path extension: [717] Pursuing extension from : GCTAGGGGAA...GGGAGCCACC:W1(V786_D0) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 786 to node: 717 updatePathRecursively(readName=r261DFRAAXX100204:2:61:13619:6070, locInSeq: 50 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:61:13619:6070) AGCCACAGGTACCTGATGGAAATGCC 50 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 49 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:61:13619:6070 with length: 76 and base [76] ends at position [49] within node: 717 totaling 0 mismatches. r261DFRAAXX100204:2:61:13619:6070 best path so far from vertex: 786 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 786 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:61:13619:6070 is [786, 717] with total mm: 0 Read r261DFRAAXX100204:2:61:13619:6070 seq GCTAGGGGAAATAGGGGAGCTCCAAACCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [786, 717] positions: [786,nodeEnd:50,readEnd:50] [717,nodeEnd:49,readEnd:76] , trimmed to: [786, 717] Threaded Read as: r261DFRAAXX100204:2:61:13619:6070 : [786, 717] ReadPath@Init: r261DFRAAXX100204:2:61:13619:6070 : [786, 717] mapped read [44]Read: >r261DFRAAXX100204:2:64:15138:21125/1 0 706 51 757 GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA - Read: r261DFRAAXX100204:2:64:15138:21125 has start: 0, end: 75 and sequence: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA after extracting substring: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 157 Threading read: r261DFRAAXX100204:2:64:15138:21125, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:64:15138:21125 sequence is: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA updatePathRecursively(readName=r261DFRAAXX100204:2:64:15138:21125, locInSeq: 0 / 75, locInNode: 157 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:64:15138:21125) GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 157 zipper alignment mm: 0 alignment divergence up to seq pos 34 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:64:15138:21125 base [34] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=r261DFRAAXX100204:2:64:15138:21125, locInSeq: 34 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:64:15138:21125) AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 34 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 65 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:64:15138:21125 with length: 76 and base [76] ends at position [65] within node: 717 totaling 0 mismatches. r261DFRAAXX100204:2:64:15138:21125 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:64:15138:21125 is [549, 717] with total mm: 0 Read r261DFRAAXX100204:2:64:15138:21125 seq GAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCACTTCCTGTGA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:34] [717,nodeEnd:65,readEnd:76] , trimmed to: [549, 717] Threaded Read as: r261DFRAAXX100204:2:64:15138:21125 : [549, 717] ReadPath@Init: r261DFRAAXX100204:2:64:15138:21125 : [549, 717] mapped read [45]Read: >r261DFRAAXX100204:2:75:16853:12097/1 0 507 51 558 GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC - Read: r261DFRAAXX100204:2:75:16853:12097 has start: 0, end: 75 and sequence: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC after extracting substring: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC findPathInGraph: V:451, with seq: GAAGAAATCTTTCTTTCCAAGTAGTGTCTTAACTCAGGAGATCATGGTAGGGAAGGGGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT trying to start the mapping to node 451 at position: 56 Threading read: r261DFRAAXX100204:2:75:16853:12097, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:75:16853:12097 sequence is: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 0 / 75, locInNode: 56 / 96, totalNumMm: 0 trying to continue the mapping to node GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 0 To VERTEX (GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1)) SEQ: GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCT 56 zipper alignment mm: 0 alignment divergence up to seq pos 41 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 97 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:75:16853:12097 base [41] ends at position [97] within node: 451 totaling 0 mismatches. -reached end of vertex: 451, exploring next vertices for continued path extension: [981] Pursuing extension from : GTGTCTTAAC...GAAGCTCCCT:W6(V451_D1) to successors: [GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)] Exploring extension from node: 451 to node: 981 updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 41 / 75, locInNode: 23 / 46, totalNumMm: 0 trying to continue the mapping to node GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) GAGCACTCTGAACCCTGTGAGGCA 41 To VERTEX (GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1)) SEQ: GAGCACTCTGAACCCTGTGAGGCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 65 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 47 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:75:16853:12097 base [65] ends at position [47] within node: 981 totaling 0 mismatches. -reached end of vertex: 981, exploring next vertices for continued path extension: [549] Pursuing extension from : GAGCACTCTGAACCCTGTGAGGCA:W6(V981_D-1) to successors: [AGTCCACCAC...GGGAGCCACC:W6(V549_D3)] Exploring extension from node: 981 to node: 549 updatePathRecursively(readName=r261DFRAAXX100204:2:75:16853:12097, locInSeq: 65 / 75, locInNode: 23 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:75:16853:12097) AGTCCACCACC 65 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: AGTCCACCACC 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 34 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:75:16853:12097 with length: 76 and base [76] ends at position [34] within node: 549 totaling 0 mismatches. r261DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 981 to : 549 = [549], with total mm: 0 Done with exploring paths from vertex: 981 Paths and scores found are: explored path: [549] w/ mm: 0 AND best selected was: [549] w/ mm: 0 r261DFRAAXX100204:2:75:16853:12097 best path so far from vertex: 451 to : 981 = [981, 549], with total mm: 0 Done with exploring paths from vertex: 451 Paths and scores found are: explored path: [981, 549] w/ mm: 0 AND best selected was: [981, 549] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:75:16853:12097 is [451, 981, 549] with total mm: 0 Read r261DFRAAXX100204:2:75:16853:12097 seq GGTCAGGCCACTTCACAAGGAGCAGAGTTAGGAAGCTCCCTGAGCACTCTGAACCCTGTGAGGCAAGTCCACCACC threaded as: PATH_N_MM_COUNT: mismatches=0, path= [451, 981, 549] positions: [451,nodeEnd:97,readEnd:41] [981,nodeEnd:47,readEnd:65] [549,nodeEnd:34,readEnd:76] , trimmed to: [451, 981, 549] Threaded Read as: r261DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] ReadPath@Init: r261DFRAAXX100204:2:75:16853:12097 : [451, 981, 549] mapped read [46]Read: >r261DFRAAXX100204:2:90:12533:11254/1 0 696 51 747 GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA - Read: r261DFRAAXX100204:2:90:12533:11254 has start: 0, end: 75 and sequence: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA after extracting substring: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA findPathInGraph: V:549, with seq: AGCACTCTGAACCCTGTGAGGCAAGTCCACCACCAGCGTATCTAGACCCAGGCCATCTAATAAAGGAAAACTGCATCTTTGCCCACATGATGCTTGGTTAAGACAAGGGGTTAGTGACAAAGTAAAGAGGATGACAGACTCTCTAAGGGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC trying to start the mapping to node 549 at position: 147 Threading read: r261DFRAAXX100204:2:90:12533:11254, length: 76, allowing for 4 max mismatches. Read: r261DFRAAXX100204:2:90:12533:11254 sequence is: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA updatePathRecursively(readName=r261DFRAAXX100204:2:90:12533:11254, locInSeq: 0 / 75, locInNode: 147 / 190, totalNumMm: 0 trying to continue the mapping to node AGTCCACCAC...GGGAGCCACC:W6(V549_D3) -ALIGNING READ SEQ (r261DFRAAXX100204:2:90:12533:11254) GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 0 To VERTEX (AGTCCACCAC...GGGAGCCACC:W6(V549_D3)) SEQ: GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACC 147 zipper alignment mm: 0 alignment divergence up to seq pos 44 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 191 = 0.0 Reached end of node sequence. Readr261DFRAAXX100204:2:90:12533:11254 base [44] ends at position [191] within node: 549 totaling 0 mismatches. -reached end of vertex: 549, exploring next vertices for continued path extension: [717] Pursuing extension from : AGTCCACCAC...GGGAGCCACC:W6(V549_D3) to successors: [AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)] Exploring extension from node: 549 to node: 717 updatePathRecursively(readName=r261DFRAAXX100204:2:90:12533:11254, locInSeq: 44 / 75, locInNode: 23 / 64, totalNumMm: 0 trying to continue the mapping to node AGCCACAGGT...CTTCCTGTGA:W5(V717_D1) -ALIGNING READ SEQ (r261DFRAAXX100204:2:90:12533:11254) AGCCACAGGTACCTGATGGAAATGCCGGCTCA 44 To VERTEX (AGCCACAGGT...CTTCCTGTGA:W5(V717_D1)) SEQ: AGCCACAGGTACCTGATGGAAATGCCGGCTCA 23 zipper alignment mm: 0 alignment divergence up to seq pos 76 = mm: 0, div:0.0 local vertex alignment divergence = 0 / 55 = 0.0 Reached end of read sequence. Readr261DFRAAXX100204:2:90:12533:11254 with length: 76 and base [76] ends at position [55] within node: 717 totaling 0 mismatches. r261DFRAAXX100204:2:90:12533:11254 best path so far from vertex: 549 to : 717 = [717], with total mm: 0 Done with exploring paths from vertex: 549 Paths and scores found are: explored path: [717] w/ mm: 0 AND best selected was: [717] w/ mm: 0 FINAL BEST PATH for r261DFRAAXX100204:2:90:12533:11254 is [549, 717] with total mm: 0 Read r261DFRAAXX100204:2:90:12533:11254 seq GGACATATGGGAGCTACATAGCCAGCCCCGTGGAGGGAGCCACCAGCCACAGGTACCTGATGGAAATGCCGGCTCA threaded as: PATH_N_MM_COUNT: mismatches=0, path= [549, 717] positions: [549,nodeEnd:191,readEnd:44] [717,nodeEnd:55,readEnd:76] , trimmed to: [549, 717] Threaded Read as: r261DFRAAXX100204:2:90:12533:11254 : [549, 717] ReadPath@Init: r261DFRAAXX100204:2:90:12533:11254 : [549, 717] number of reads threaded = 46 (from total of 46) which came from 42 pairs Read name to pairing info: r261DFRAAXX100204:2:47:8841:7694 => [451, 981, 549] Read name to pairing info: r261DFRAAXX100204:1:67:9991:2232 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:27:5714:7307 => [549] Read name to pairing info: r261DFRAAXX100204:2:27:5714:7307 => [549] Read name to pairing info: 61DFRAAXX100204:1:70:1041:1268 => [549] Read name to pairing info: 61DFRAAXX100204:1:113:7690:4285 => [981, 549] Read name to pairing info: 61DFRAAXX100204:1:67:9991:2232 => [380, 982, 440, 451] Read name to pairing info: r261DFRAAXX100204:1:113:7690:4285 => [981, 549] Read name to pairing info: 61DFRAAXX100204:2:43:2649:2845 => [945, 451] Read name to pairing info: r261DFRAAXX100204:1:112:16960:13532 => [549] Read name to pairing info: r261DFRAAXX100204:2:13:7749:17373 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:90:12533:11254 => [549, 717] Read name to pairing info: 61DFRAAXX100204:1:20:5538:6890 => [549] Read name to pairing info: r261DFRAAXX100204:2:61:13619:6070 => [786, 717] Read name to pairing info: r261DFRAAXX100204:1:20:5538:6890 => [549] Read name to pairing info: 61DFRAAXX100204:1:112:16960:13532 => [549] Read name to pairing info: 61DFRAAXX100204:2:61:13619:6070 => [786, 717] Read name to pairing info: r261DFRAAXX100204:2:34:11574:10433 => [982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:13:7749:17373 => [380, 982, 440, 451] Read name to pairing info: r261DFRAAXX100204:2:90:12533:11254 => [549, 717] Read name to pairing info: 61DFRAAXX100204:2:47:8841:7694 => [451, 981, 549] Read name to pairing info: 61DFRAAXX100204:1:115:8211:5116 => [451, 981] Read name to pairing info: 61DFRAAXX100204:2:34:11574:10433 => [982, 440, 451] Read name to pairing info: r261DFRAAXX100204:1:85:13720:15251 => [549] Read name to pairing info: r261DFRAAXX100204:1:39:8793:18196 => [380, 982][451, 981, 549] Read name to pairing info: 61DFRAAXX100204:2:33:12784:13782 => [549] Read name to pairing info: 61DFRAAXX100204:2:47:12270:6103 => [549] Read name to pairing info: 61DFRAAXX100204:1:39:8793:18196 => [380, 982][451, 981, 549] Read name to pairing info: r261DFRAAXX100204:2:75:16853:12097 => [451, 981, 549] Read name to pairing info: r261DFRAAXX100204:2:59:18912:18239 => [451, 981][549] Read name to pairing info: 61DFRAAXX100204:1:85:13720:15251 => [549] Read name to pairing info: r261DFRAAXX100204:2:47:12270:6103 => [549] Read name to pairing info: r261DFRAAXX100204:2:33:12784:13782 => [549] Read name to pairing info: r261DFRAAXX100204:2:64:15138:21125 => [549, 717] Read name to pairing info: r261DFRAAXX100204:2:18:10392:2962 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:59:18912:18239 => [451, 981][549] Read name to pairing info: 61DFRAAXX100204:2:18:10392:2962 => [380, 982, 440, 451] Read name to pairing info: 61DFRAAXX100204:2:64:15138:21125 => [549, 717] Read name to pairing info: r261DFRAAXX100204:2:43:2649:2845 => [945, 451] Read name to pairing info: r261DFRAAXX100204:1:115:8211:5116 => [451, 981] Read name to pairing info: 61DFRAAXX100204:2:75:16853:12097 => [451, 981, 549] Read name to pairing info: r261DFRAAXX100204:1:70:1041:1268 => [549] SECTION ================== Pairing up the reads into PairPaths =========================== we have 1 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 1 reads supporting the path: PairPath [_paths=[[549], []]] we have 2 reads supporting the path: PairPath [_paths=[[549], []]] we have 3 reads supporting the path: PairPath [_paths=[[549], []]] we have 1 reads supporting the path: PairPath [_paths=[[981, 549], []]] we have 2 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[945, 451], []]] we have 4 reads supporting the path: PairPath [_paths=[[549], []]] we have 3 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 1 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 5 reads supporting the path: PairPath [_paths=[[549], []]] we have 1 reads supporting the path: PairPath [_paths=[[786, 717], []]] we have 6 reads supporting the path: PairPath [_paths=[[549], []]] we have 7 reads supporting the path: PairPath [_paths=[[549], []]] we have 2 reads supporting the path: PairPath [_paths=[[786, 717], []]] we have 1 reads supporting the path: PairPath [_paths=[[982, 440, 451], []]] we have 4 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 2 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[451, 981], []]] we have 2 reads supporting the path: PairPath [_paths=[[982, 440, 451], []]] we have 8 reads supporting the path: PairPath [_paths=[[549], []]] we have 1 reads supporting the path: PairPath [_paths=[[380, 982], [451, 981, 549]]] we have 9 reads supporting the path: PairPath [_paths=[[549], []]] we have 10 reads supporting the path: PairPath [_paths=[[549], []]] we have 2 reads supporting the path: PairPath [_paths=[[380, 982], [451, 981, 549]]] we have 3 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 1 reads supporting the path: PairPath [_paths=[[451, 981], [549]]] we have 11 reads supporting the path: PairPath [_paths=[[549], []]] we have 12 reads supporting the path: PairPath [_paths=[[549], []]] we have 13 reads supporting the path: PairPath [_paths=[[549], []]] we have 3 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 5 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[451, 981], [549]]] we have 6 reads supporting the path: PairPath [_paths=[[380, 982, 440, 451], []]] we have 4 reads supporting the path: PairPath [_paths=[[549, 717], []]] we have 2 reads supporting the path: PairPath [_paths=[[945, 451], []]] we have 2 reads supporting the path: PairPath [_paths=[[451, 981], []]] we have 4 reads supporting the path: PairPath [_paths=[[451, 981, 549], []]] we have 14 reads supporting the path: PairPath [_paths=[[549], []]] number of reads used = 42 ## Read PathPair results: 38 singletons, num pairs: 4, num pairs discarded: 0 Printing Pair Paths Before DAG Overlap Layout ------------------ Start Vertex:945 PairPaths@Init: PairPath [_paths=[[945, 451], []]]=2 Start Vertex:786 PairPaths@Init: PairPath [_paths=[[786, 717], []]]=2 Start Vertex:451 PairPaths@Init: PairPath [_paths=[[451, 981, 549], []]]=4 PairPaths@Init: PairPath [_paths=[[451, 981], [549]]]=2 PairPaths@Init: PairPath [_paths=[[451, 981], []]]=2 Start Vertex:549 PairPaths@Init: PairPath [_paths=[[549, 717], []]]=4 PairPaths@Init: PairPath [_paths=[[549], []]]=14 Start Vertex:981 PairPaths@Init: PairPath [_paths=[[981, 549], []]]=2 Start Vertex:982 PairPaths@Init: PairPath [_paths=[[982, 440, 451], []]]=2 Start Vertex:380 PairPaths@Init: PairPath [_paths=[[380, 982], [451, 981, 549]]]=2 PairPaths@Init: PairPath [_paths=[[380, 982, 440, 451], []]]=6 SECTION ======== Create DAG from Overlap Layout ============ Noncontained paths: [[380, 982, 440, 451], [451, 981, 549], [786, 717], [549, 717], [945, 451]] Node[451] has repeat count: 3 Node[549] has repeat count: 2 Node[717] has repeat count: 2 Node[945] has repeat count: 1 Node[786] has repeat count: 1 Node[981] has repeat count: 1 Node[982] has repeat count: 1 Node[440] has repeat count: 1 Node[380] has repeat count: 1 path PN1::[380, 982, 440, 451] extends no path PathNode Overlap Detected: [overlap: 1] PN1::[380, 982, 440, 451] extended by PN2::[451, 981, 549] PathNode Overlap Detected: [overlap: 1] PN5::[945, 451] extended by PN2::[451, 981, 549] extension of: PN1::[380, 982, 440, 451] by PN2::[451, 981, 549] has 1 terminal matches. extension of: PN5::[945, 451] by PN2::[451, 981, 549] has 1 terminal matches. path PN3::[786, 717] extends no path PathNode Overlap Detected: [overlap: 1] PN2::[451, 981, 549] extended by PN4::[549, 717] extension of: PN2::[451, 981, 549] by PN4::[549, 717] has 1 terminal matches. path PN5::[945, 451] extends no path PathNodeDescription: PN2::[451, 981, 549] PathNodeDescription: PN5::[945, 451] PathNodeDescription: PN3::[786, 717] PathNodeDescription: PN4::[549, 717] PathNodeDescription: PN1::[380, 982, 440, 451] // Breaking cycles in Path Overlap Graph (POG), Round: 1 SECTION ======== Convert Path-DAG to SeqVertex-DAG ============ prep_for_DAG_collapse: PN2 CurrVert:[983, 984, 985], OrigVert:[451, 981, 549] prep_for_DAG_collapse: PN5 CurrVert:[986, 987], OrigVert:[945, 451] prep_for_DAG_collapse: PN3 CurrVert:[988, 989], OrigVert:[786, 717] prep_for_DAG_collapse: PN4 CurrVert:[990, 991], OrigVert:[549, 717] prep_for_DAG_collapse: PN1 CurrVert:[992, 993, 994, 995], OrigVert:[380, 982, 440, 451] DFS_path_to_graph: targeting: PN5::[945, 451] DFS_path_to_graph: targeting: PN2::[451, 981, 549] DFS_path_to_graph: targeting: PN4::[549, 717] DFS_path_to_graph: targeting: PN3::[786, 717] DFS_path_to_graph: targeting: PN1::[380, 982, 440, 451] ## Round: 1 Zipping up. ## zip_up() attempt_zip_merge_SeqVertices([AGTCCACCAC...GGGAGCCACC:W6(V985_549_D11), AGCACTCTGA...GGGAGCCACC:W6(V990_549_D4)]) parent_depths[10], child_depths: [12, 12] UpZipMerging nodes: [AGCACTCTGA...GGGAGCCACC:W6(V985_549_D11), AGCACTCTGA...GGGAGCCACC:W6(V990_549_D4)] to AGTCCACCAC...GGGAGCCACC:W6(V996_549_D4) Zip up merged: 2 nodes. ## Round: 2 Zipping up. ## zip_up() attempt_zip_merge_SeqVertices([GTGTCTTAAC...GAAGCTCCCT:W6(V995_451_D8), GAAGAAATCT...GAAGCTCCCT:W6(V983_451_D1), GTGTCTTAAC...GAAGCTCCCT:W6(V987_451_D5)]) parent_depths[7, 2], child_depths: [9, 9, 9] UpZipMerging nodes: [GAAGAAATCT...GAAGCTCCCT:W6(V995_451_D8), GAAGAAATCT...GAAGCTCCCT:W6(V983_451_D1), GAAGAAATCT...GAAGCTCCCT:W6(V987_451_D5)] to GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) Zip up merged: 3 nodes. ## Round: 3 Zipping up. ## zip_up() Zip up merged: 0 nodes. ## Round: 4 Zipping down. Zip down merged: 0 nodes. ## Round: 5 Zipping up. ## zip_up() Zip up merged: 0 nodes. ## Round: 6 Zipping down. Zip down merged: 0 nodes. destroy_unzipped_duplicates_above() Old_to_new_vertex_id_mapping: 992 => 992 (stays same) Old_to_new_vertex_id_mapping: 986 => 986 (stays same) Old_to_new_vertex_id_mapping: 988 => 988 (stays same) Old_to_new_vertex_id_mapping: 993 => 993 (stays same) Old_to_new_vertex_id_mapping: 989 => 989 (stays same) Old_to_new_vertex_id_mapping: 994 => 994 (stays same) Old_to_new_vertex_id_mapping: 995 => 997 Old_to_new_vertex_id_mapping: 983 => 997 Old_to_new_vertex_id_mapping: 987 => 997 Old_to_new_vertex_id_mapping: 984 => 984 (stays same) Old_to_new_vertex_id_mapping: 985 => 996 Old_to_new_vertex_id_mapping: 990 => 996 Old_to_new_vertex_id_mapping: 991 => 991 (stays same) Old-to-new-path mappings: {[945, 451]=[986, 997], [451, 981, 549]=[997, 984, 996], [549, 717]=[996, 991], [786, 717]=[988, 989], [380, 982, 440, 451]=[992, 993, 994, 997]} update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[945, 451], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[549, 717], []]] has support: 4 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[982, 440, 451], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [982, 440, 451] mapped to: [[993, 994, 997]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981, 549], []]] has support: 4 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981], [549]]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [451, 981] mapped to: [[997, 984]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[786, 717], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[451, 981], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [451, 981] mapped to: [[997, 984]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[380, 982], [451, 981, 549]]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [380, 982] mapped to: [[992, 993]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[549], []]] has support: 14 update_PairPaths_using_overlapDAG_refined_paths, p1: [549] mapped to: [[996]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[981, 549], []]] has support: 2 update_PairPaths_using_overlapDAG_refined_paths, p1: [981, 549] mapped to: [[984, 996]] update_PairPaths_using_overlapDAG_refined_paths: orig_pp: PairPath [_paths=[[380, 982, 440, 451], []]] has support: 6 Printing Pair Paths ------------------ Start Vertex:992 PairPaths@PostOverlapLayout: PairPath [_paths=[[992, 993], [997, 984, 996]]]=2 PairPaths@PostOverlapLayout: PairPath [_paths=[[992, 993, 994, 997], []]]=6 Start Vertex:993 PairPaths@PostOverlapLayout: PairPath [_paths=[[993, 994, 997], []]]=2 Start Vertex:996 PairPaths@PostOverlapLayout: PairPath [_paths=[[996, 991], []]]=4 PairPaths@PostOverlapLayout: PairPath [_paths=[[996], []]]=14 Start Vertex:997 PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 984], [996]]]=2 PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 984], []]]=2 PairPaths@PostOverlapLayout: PairPath [_paths=[[997, 984, 996], []]]=4 Start Vertex:984 PairPaths@PostOverlapLayout: PairPath [_paths=[[984, 996], []]]=2 Start Vertex:986 PairPaths@PostOverlapLayout: PairPath [_paths=[[986, 997], []]]=2 Start Vertex:988 PairPaths@PostOverlapLayout: PairPath [_paths=[[988, 989], []]]=2 SECTION ======= Reorganize Read Pairings ========= NODE_DESCR: GGCCACACGA...CTTCCTCAAG:W2(V992_380_D0) Preds: [] Succ: [CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1) ] NODE_DESCR: CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1) Preds: [GGCCACACGA...CTTCCTCAAG:W2(V992_380_D0) ] Succ: [CTTTCCAAGTA:W8(V994_440_D2) ] NODE_DESCR: CTTTCCAAGTA:W8(V994_440_D2) Preds: [CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1) ] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] NODE_DESCR: AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) Preds: [GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2) ] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4) ] NODE_DESCR: GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) Preds: [CTTTCCAAGTA:W8(V994_440_D2) AGAATACAAA...TTTCCAAGTA:W1(V986_945_D0) ] Succ: [GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2) ] NODE_DESCR: GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2) Preds: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] Succ: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) ] NODE_DESCR: AGAATACAAA...TTTCCAAGTA:W1(V986_945_D0) Preds: [] Succ: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1) ] NODE_DESCR: GCTAGGGGAA...GGGAGCCACC:W1(V988_786_D0) Preds: [] Succ: [AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1) ] NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1) Preds: [GCTAGGGGAA...GGGAGCCACC:W1(V988_786_D0) ] Succ: [] NODE_DESCR: AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4) Preds: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3) ] Succ: [] combinePaths: [992, 993], [997, 984, 996] Examining imputation of path connecting pairpath: PairPath [_paths=[[992, 993], [997, 984, 996]]] nodes 993 to 997 Could Impute path connectingPairPath [_paths=[[992, 993], [997, 984, 996]]] containing intervening nodes: [994] we have 2 reads supporting the path: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] OK pp update to new DAG: PairPath [_paths=[[992, 993], [997, 984, 996]]] => PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] we have 6 reads supporting the path: PairPath [_paths=[[992, 993, 994, 997], []]] we have 2 reads supporting the path: PairPath [_paths=[[993, 994, 997], []]] we have 4 reads supporting the path: PairPath [_paths=[[996, 991], []]] we have 14 reads supporting the path: PairPath [_paths=[[996], []]] combinePaths: [997, 984], [996] Examining imputation of path connecting pairpath: PairPath [_paths=[[997, 984], [996]]] nodes 984 to 996 Could Impute path connectingPairPath [_paths=[[997, 984], [996]]] containing intervening nodes: [] we have 2 reads supporting the path: PairPath [_paths=[[997, 984, 996], []]] OK pp update to new DAG: PairPath [_paths=[[997, 984], [996]]] => PairPath [_paths=[[997, 984, 996], []]] we have 2 reads supporting the path: PairPath [_paths=[[997, 984], []]] we have 6 reads supporting the path: PairPath [_paths=[[997, 984, 996], []]] we have 2 reads supporting the path: PairPath [_paths=[[984, 996], []]] we have 2 reads supporting the path: PairPath [_paths=[[986, 997], []]] we have 2 reads supporting the path: PairPath [_paths=[[988, 989], []]] Start Vertex:992 PairPaths@AfterPairReorganization: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]]=2 PairPaths@AfterPairReorganization: PairPath [_paths=[[992, 993, 994, 997], []]]=6 Start Vertex:993 PairPaths@AfterPairReorganization: PairPath [_paths=[[993, 994, 997], []]]=2 Start Vertex:996 PairPaths@AfterPairReorganization: PairPath [_paths=[[996, 991], []]]=4 PairPaths@AfterPairReorganization: PairPath [_paths=[[996], []]]=14 Start Vertex:997 PairPaths@AfterPairReorganization: PairPath [_paths=[[997, 984], []]]=2 PairPaths@AfterPairReorganization: PairPath [_paths=[[997, 984, 996], []]]=6 Start Vertex:984 PairPaths@AfterPairReorganization: PairPath [_paths=[[984, 996], []]]=2 Start Vertex:986 PairPaths@AfterPairReorganization: PairPath [_paths=[[986, 997], []]]=2 Start Vertex:988 PairPaths@AfterPairReorganization: PairPath [_paths=[[988, 989], []]]=2 ComponentDivision: 0 contains the following vertices: node_id: 988 node_id: 989 ComponentDivision: 1 contains the following vertices: node_id: 992 node_id: 993 node_id: 994 node_id: 996 node_id: 997 node_id: 984 node_id: 986 node_id: 991 total number of components = 2 Searching for kmer set: TGGCTACAAACAGACTTCCTCAAG -> GGCTACAAACAGACTTCCTCAAGC Searching for kmer set: GCCAGCCCCGTGGAGGGAGCCACC -> CCAGCCCCGTGGAGGGAGCCACCA Searching for kmer set: CCTCATCAGCAAGAAGAAATCTTT -> CTCATCAGCAAGAAGAAATCTTTC Searching for kmer set: GAGCACTCTGAACCCTGTGAGGCA -> AGCACTCTGAACCCTGTGAGGCAA Searching for kmer set: GGAAGAAATCTTTCTTTCCAAGTA -> GAAGAAATCTTTCTTTCCAAGTAG Searching for kmer set: CCCAGCCCCGTGGAGGGAGCCACC -> CCAGCCCCGTGGAGGGAGCCACCA Searching for kmer set: AGAAGAAATCTTTCTTTCCAAGTA -> GAAGAAATCTTTCTTTCCAAGTAG Searching for kmer set: AGGAGCAGAGTTAGGAAGCTCCCT -> GGAGCAGAGTTAGGAAGCTCCCTG SECTION ============= Begin Assembly =============== Assembling subcomponent 0 Subcomponent: 0, adding pairpath: PairPath [_paths=[[988, 989], []]] #### Component Read Summary BEFORE PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 988 has size: 1 Node: 988 has 1 pairpaths stored: PairPath [_paths=[[988, 989], []]] has read support: 2 ## Total number of pairpaths: 1 #### Component Read Summary AFTER PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 988 has size: 1 Node: 988 has 1 pairpaths stored: PairPath [_paths=[[988, 989], []]] has read support: 2 ## Total number of pairpaths: 1 ### Extracting triplets from reads. ### 0 nodes have locked-in triplet paths: ### Extracting complex path prefixes from reads. -capturing path prefixes -removing prefixes that are subpaths of other prefixes #### Extended triplets from reads: Adding edge from S to AAACCCAGCCCCGTGGAGGGAGCCACC:W1(V988_786_D0) Adding edge from AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1) to T SECTION ############### ## Starting Butterfly Assembly ## ################### PairPaths to assemble: Start Vertex:-1 PairPaths@BflyStart: PairPath [_paths=[[-1, 988], []]]=1 Start Vertex:988 PairPaths@BflyStart: PairPath [_paths=[[988, 989], []]]=2 Start Vertex:989 PairPaths@BflyStart: PairPath [_paths=[[989, -2], []]]=1 QUEUE IS: [:W2147483647(V-1_D-1)] #### getAllProbablePaths() The next node in the queue C is -1 butterfly pct done: 1 / 2 = 50.0% pct done. ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 988], []]] Exploring extension of: 1 paths that end at vertex: -1 == Current Paths Constructed Up To Vertex: -1 : PathPartialReconstruction@[-1] : [-1] Adding the reads {PairPath [_paths=[[-1, 988], []]]=1} to the path [-1] ################################################ ###### Exploring extension of v: -1 by successor: 988 ################################################ Count of paths ending at v: -1 = 1 path_ending_at_v: [-1] # [PathCounter(988)=0 Examining potential extension of path ending at node V: -1 by successor: 988, via path=[-1] path [-1] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 988] -readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988] => true examining subPath: [-1, 988] for reinforcement by read: [[-1, 988], []] :true the read PairPath [_paths=[[-1, 988], []]](1) enforces the sub-path ([-1, 988]) -found: 1 reads supporting subpath. the sub-path ([-1, 988]) has PASSED Successful extension of 988 to generate path [-1, 988] updateReadsOfPath: [-1, 988] read PairPath [_paths=[[-1, 988], []]] is consistent with 988 pct_contained_propagated: 0.0% 988 was added to the queue QUEUE IS: [AAACCCAGCCCCGTGGAGGGAGCCACC:W1(V988_786_D0)] #### getAllProbablePaths() The next node in the queue C is 988 butterfly pct done: 2 / 2 = 100.0% pct done. ReadsStartingAtV_START_BFLY, Node: 988 read: PairPath [_paths=[[988, 989], []]] Exploring extension of: 1 paths that end at vertex: 988 == Current Paths Constructed Up To Vertex: 988 : PathPartialReconstruction@[988] : [-1, 988] Adding the reads {PairPath [_paths=[[988, 989], []]]=2} to the path [-1, 988] ################################################ ###### Exploring extension of v: 988 by successor: 989 ################################################ Count of paths ending at v: 988 = 1 path_ending_at_v: [-1, 988] # [PathCounter(989)=0 Examining potential extension of path ending at node V: 988 by successor: 989, via path=[-1, 988] path [-1, 988] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1, 988] ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 989], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 988, 989] -readsOfPathUntilV: PairPath [_paths=[[988, 989], []]] -checking if pp: PairPath [_paths=[[988, 989], []]] supports extension of [-1, 988, 989] => true examining subPath: [-1, 988, 989] for reinforcement by read: [[988, 989], []] :true the read PairPath [_paths=[[988, 989], []]](2) enforces the sub-path ([-1, 988, 989]) -found: 2 reads supporting subpath. the sub-path ([-1, 988, 989]) has PASSED Successful extension of 989 to generate path [-1, 988, 989] updateReadsOfPath: [-1, 988, 989] read PairPath [_paths=[[988, 989], []]] is consistent with 989 pct_contained_propagated: 50.0% 989 was added to the queue QUEUE IS: [AGCCACAGGT...CTTCCTGTGA:W5(V989_717_D1)] #### getAllProbablePaths() The next node in the queue C is 989 butterfly pct done: 3 / 2 = 150.0% pct done. ReadsStartingAtV_START_BFLY, Node: 989 read: PairPath [_paths=[[989, -2], []]] Exploring extension of: 1 paths that end at vertex: 989 == Current Paths Constructed Up To Vertex: 989 : PathPartialReconstruction@[989] : [-1, 988, 989] Adding the reads {PairPath [_paths=[[989, -2], []]]=1} to the path [-1, 988, 989] ################################################ ###### Exploring extension of v: 989 by successor: -2 ################################################ Count of paths ending at v: 989 = 1 path_ending_at_v: [-1, 988, 989] # [PathCounter(-2)=0 Examining potential extension of path ending at node V: 989 by successor: -2, via path=[-1, 988, 989] TripletMapper doesnt contain node: 989 ReadsOfPathUntilV: PATH: [-1, 988, 989] ReadsOfPathUntiV: READ: PairPath [_paths=[[988, 989], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[989, -2], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 988], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 988, 989, -2] -readsOfPathUntilV: PairPath [_paths=[[988, 989], []]] -checking if pp: PairPath [_paths=[[988, 989], []]] supports extension of [-1, 988, 989, -2] => false examining subPath: [-1, 988, 989, -2] for reinforcement by read: [[988, 989], []] :false the read PairPath [_paths=[[988, 989], []]](2) does not enforce the sub-path ([-1, 988, 989, -2]) -readsOfPathUntilV: PairPath [_paths=[[989, -2], []]] -checking if pp: PairPath [_paths=[[989, -2], []]] supports extension of [-1, 988, 989, -2] => false examining subPath: [-1, 988, 989, -2] for reinforcement by read: [[989, -2], []] :false the read PairPath [_paths=[[989, -2], []]](1) does not enforce the sub-path ([-1, 988, 989, -2]) -readsOfPathUntilV: PairPath [_paths=[[-1, 988], []]] -checking if pp: PairPath [_paths=[[-1, 988], []]] supports extension of [-1, 988, 989, -2] => false examining subPath: [-1, 988, 989, -2] for reinforcement by read: [[-1, 988], []] :false the read PairPath [_paths=[[-1, 988], []]](1) does not enforce the sub-path ([-1, 988, 989, -2]) -found: 0 reads supporting subpath. the sub-path ([-1, 988, 989, -2]) has NOT PASSED Successful extension of -2 to generate path [-1, 988, 989, -2] updateReadsOfPath: [-1, 988, 989, -2] read PairPath [_paths=[[989, -2], []]] is consistent with -2 pct_contained_propagated: 66.66667% -2 was added to the queue QUEUE IS: [:W-1(V-2_D-1)] #### getAllProbablePaths() The next node in the queue C is -2 butterfly pct done: 4 / 2 = 200.0% pct done. ReadsStartingAtV_START_BFLY-2 EMPTY Exploring extension of: 1 paths that end at vertex: -2 == Current Paths Constructed Up To Vertex: -2 : PathPartialReconstruction@[-2] : [-1, 988, 989, -2] sequence for path: [-1, 988, 989, -2] is too short: 92 No paths to pursue. Continue... SECTION ============= Begin Assembly =============== Assembling subcomponent 1 Subcomponent: 1, adding pairpath: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[992, 993, 994, 997], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[993, 994, 997], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[996, 991], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[997, 984], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[997, 984, 996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[984, 996], []]] Subcomponent: 1, adding pairpath: PairPath [_paths=[[986, 997], []]] #### Component Read Summary BEFORE PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 992 has size: 2 Node: 992 has 2 pairpaths stored: PairPath [_paths=[[992, 993, 994, 997], []]] has read support: 6 PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] has read support: 2 componentReadHash, start node: 993 has size: 1 Node: 993 has 1 pairpaths stored: PairPath [_paths=[[993, 994, 997], []]] has read support: 2 componentReadHash, start node: 996 has size: 2 Node: 996 has 2 pairpaths stored: PairPath [_paths=[[996], []]] has read support: 14 PairPath [_paths=[[996, 991], []]] has read support: 4 componentReadHash, start node: 997 has size: 2 Node: 997 has 2 pairpaths stored: PairPath [_paths=[[997, 984, 996], []]] has read support: 6 PairPath [_paths=[[997, 984], []]] has read support: 2 componentReadHash, start node: 984 has size: 1 Node: 984 has 1 pairpaths stored: PairPath [_paths=[[984, 996], []]] has read support: 2 componentReadHash, start node: 986 has size: 1 Node: 986 has 1 pairpaths stored: PairPath [_paths=[[986, 997], []]] has read support: 2 ## Total number of pairpaths: 9 #### Component Read Summary AFTER PairPath-per-node Reduction ***** PairPath Counts ***** componentReadHash, start node: 992 has size: 2 Node: 992 has 2 pairpaths stored: PairPath [_paths=[[992, 993, 994, 997], []]] has read support: 6 PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] has read support: 2 componentReadHash, start node: 993 has size: 1 Node: 993 has 1 pairpaths stored: PairPath [_paths=[[993, 994, 997], []]] has read support: 2 componentReadHash, start node: 996 has size: 2 Node: 996 has 2 pairpaths stored: PairPath [_paths=[[996], []]] has read support: 14 PairPath [_paths=[[996, 991], []]] has read support: 4 componentReadHash, start node: 997 has size: 2 Node: 997 has 2 pairpaths stored: PairPath [_paths=[[997, 984, 996], []]] has read support: 6 PairPath [_paths=[[997, 984], []]] has read support: 2 componentReadHash, start node: 984 has size: 1 Node: 984 has 1 pairpaths stored: PairPath [_paths=[[984, 996], []]] has read support: 2 componentReadHash, start node: 986 has size: 1 Node: 986 has 1 pairpaths stored: PairPath [_paths=[[986, 997], []]] has read support: 2 ## Total number of pairpaths: 9 ### Extracting triplets from reads. Setting initial triplet adjacency_path for central node: 993 => [992, 993, 994] Setting initial triplet adjacency_path for central node: 994 => [993, 994, 997] Setting initial triplet adjacency_path for central node: 997 => [994, 997, 984] Setting initial triplet adjacency_path for central node: 984 => [997, 984, 996] triplet adjacency_path of node: 993 => [992, 993, 994] already captured. triplet adjacency_path of node: 994 => [993, 994, 997] already captured. triplet adjacency_path of node: 994 => [993, 994, 997] already captured. triplet adjacency_path of node: 984 => [997, 984, 996] already captured. ### 4 nodes have locked-in triplet paths: Triplet locks for: 993 : [[992, 993, 994]] Triplet locks for: 994 : [[993, 994, 997]] Triplet locks for: 997 : [[994, 997, 984]] Triplet locks for: 984 : [[997, 984, 996]] ### Extracting complex path prefixes from reads. -capturing path prefixes -removing prefixes that are subpaths of other prefixes EXTENDED_TRIPLET_CAPTURED: [992, 993, 994] EXTENDED_TRIPLET_CAPTURED: [992, 993, 994, 997, 984, 996] EXTENDED_TRIPLET_CAPTURED: [992, 993, 994, 997] EXTENDED_TRIPLET_CAPTURED: [993, 994, 997] EXTENDED_TRIPLET_CAPTURED: [992, 993, 994, 997, 984] #### Extended triplets from reads: Complex prefix paths for: 994 : [[992, 993, 994]] Complex prefix paths for: 996 : [[992, 993, 994, 997, 984, 996]] Complex prefix paths for: 997 : [[992, 993, 994, 997], [993, 994, 997]] Complex prefix paths for: 984 : [[992, 993, 994, 997, 984]] Adding edge from S to CCACATTTCT...CTTCCTCAAG:W2(V992_380_D0) Adding edge from S to GCCTCATCAG...TTTCCAAGTA:W1(V986_945_D0) Adding edge from AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4) to T SECTION ############### ## Starting Butterfly Assembly ## ################### PairPaths to assemble: Start Vertex:992 PairPaths@BflyStart: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]]=2 PairPaths@BflyStart: PairPath [_paths=[[992, 993, 994, 997], []]]=6 Start Vertex:-1 PairPaths@BflyStart: PairPath [_paths=[[-1, 986], []]]=1 PairPaths@BflyStart: PairPath [_paths=[[-1, 992], []]]=1 Start Vertex:993 PairPaths@BflyStart: PairPath [_paths=[[993, 994, 997], []]]=2 Start Vertex:996 PairPaths@BflyStart: PairPath [_paths=[[996, 991], []]]=4 PairPaths@BflyStart: PairPath [_paths=[[996], []]]=14 Start Vertex:997 PairPaths@BflyStart: PairPath [_paths=[[997, 984], []]]=2 PairPaths@BflyStart: PairPath [_paths=[[997, 984, 996], []]]=6 Start Vertex:984 PairPaths@BflyStart: PairPath [_paths=[[984, 996], []]]=2 Start Vertex:986 PairPaths@BflyStart: PairPath [_paths=[[986, 997], []]]=2 Start Vertex:991 PairPaths@BflyStart: PairPath [_paths=[[991, -2], []]]=1 QUEUE IS: [:W2147483647(V-1_D-1)] #### getAllProbablePaths() The next node in the queue C is -1 butterfly pct done: 1 / 8 = 12.5% pct done. ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 986], []]] ReadsStartingAtV_START_BFLY, Node: -1 read: PairPath [_paths=[[-1, 992], []]] Exploring extension of: 1 paths that end at vertex: -1 == Current Paths Constructed Up To Vertex: -1 : PathPartialReconstruction@[-1] : [-1] Adding the reads {PairPath [_paths=[[-1, 986], []]]=1, PairPath [_paths=[[-1, 992], []]]=1} to the path [-1] ################################################ ###### Exploring extension of v: -1 by successor: 992 ################################################ Count of paths ending at v: -1 = 1 path_ending_at_v: [-1] # [PathCounter(992)=0 Examining potential extension of path ending at node V: -1 by successor: 992, via path=[-1] path [-1] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 992] -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 992] => false examining subPath: [-1, 992] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([-1, 992]) -readsOfPathUntilV: PairPath [_paths=[[-1, 992], []]] -checking if pp: PairPath [_paths=[[-1, 992], []]] supports extension of [-1, 992] => true examining subPath: [-1, 992] for reinforcement by read: [[-1, 992], []] :true the read PairPath [_paths=[[-1, 992], []]](1) enforces the sub-path ([-1, 992]) -found: 1 reads supporting subpath. the sub-path ([-1, 992]) has PASSED Successful extension of 992 to generate path [-1, 992] updateReadsOfPath: [-1, 992] read PairPath [_paths=[[-1, 986], []]] is not consistent with 992 read PairPath [_paths=[[-1, 992], []]] is consistent with 992 pct_contained_propagated: 0.0% 992 was added to the queue ################################################ ###### Exploring extension of v: -1 by successor: 986 ################################################ Count of paths ending at v: -1 = 1 path_ending_at_v: [-1] # [PathCounter(986)=0 Examining potential extension of path ending at node V: -1 by successor: 986, via path=[-1] path [-1] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 986] -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986] => true examining subPath: [-1, 986] for reinforcement by read: [[-1, 986], []] :true the read PairPath [_paths=[[-1, 986], []]](1) enforces the sub-path ([-1, 986]) -found: 1 reads supporting subpath. the sub-path ([-1, 986]) has PASSED Successful extension of 986 to generate path [-1, 986] updateReadsOfPath: [-1, 986] read PairPath [_paths=[[-1, 986], []]] is consistent with 986 read PairPath [_paths=[[-1, 992], []]] is not consistent with 986 pct_contained_propagated: 0.0% 986 was added to the queue ################################################ ###### Exploring extension of v: -1 by successor: 988 ################################################ component either lacks: 988 or at sink QUEUE IS: [CCACATTTCT...CTTCCTCAAG:W2(V992_380_D0), GCCTCATCAG...TTTCCAAGTA:W1(V986_945_D0)] #### getAllProbablePaths() The next node in the queue C is 992 butterfly pct done: 2 / 8 = 25.0% pct done. ReadsStartingAtV_START_BFLY, Node: 992 read: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsStartingAtV_START_BFLY, Node: 992 read: PairPath [_paths=[[992, 993, 994, 997], []]] Exploring extension of: 1 paths that end at vertex: 992 == Current Paths Constructed Up To Vertex: 992 : PathPartialReconstruction@[992] : [-1, 992] Adding the reads {PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]]=2, PairPath [_paths=[[992, 993, 994, 997], []]]=6} to the path [-1, 992] ################################################ ###### Exploring extension of v: 992 by successor: 993 ################################################ Count of paths ending at v: 992 = 1 path_ending_at_v: [-1, 992] # [PathCounter(993)=0 Examining potential extension of path ending at node V: 992 by successor: 993, via path=[-1, 992] path [-1, 992] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1, 992] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 992, 993] -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993] => true examining subPath: [-1, 992, 993] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :true the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) enforces the sub-path ([-1, 992, 993]) -found: 2 reads supporting subpath. the sub-path ([-1, 992, 993]) has PASSED Successful extension of 993 to generate path [-1, 992, 993] updateReadsOfPath: [-1, 992, 993] read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 993 read PairPath [_paths=[[992, 993, 994, 997], []]] is consistent with 993 pct_contained_propagated: 33.333336% 993 was added to the queue QUEUE IS: [GCCTCATCAG...TTTCCAAGTA:W1(V986_945_D0), CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1)] #### getAllProbablePaths() The next node in the queue C is 986 butterfly pct done: 3 / 8 = 37.5% pct done. ReadsStartingAtV_START_BFLY, Node: 986 read: PairPath [_paths=[[986, 997], []]] Exploring extension of: 1 paths that end at vertex: 986 == Current Paths Constructed Up To Vertex: 986 : PathPartialReconstruction@[986] : [-1, 986] Adding the reads {PairPath [_paths=[[986, 997], []]]=2} to the path [-1, 986] ################################################ ###### Exploring extension of v: 986 by successor: 997 ################################################ Count of paths ending at v: 986 = 1 path_ending_at_v: [-1, 986] # [PathCounter(997)=0 Examining potential extension of path ending at node V: 986 by successor: 997, via path=[-1, 986] path [-1, 986] is too short to check for triplet support. ReadsOfPathUntilV: PATH: [-1, 986] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] -checking if subPath has enough read support. Exploring sub path: [986, 997] -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986, 997] => false examining subPath: [986, 997] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([986, 997]) -readsOfPathUntilV: PairPath [_paths=[[986, 997], []]] -checking if pp: PairPath [_paths=[[986, 997], []]] supports extension of [-1, 986, 997] => true examining subPath: [986, 997] for reinforcement by read: [[986, 997], []] :true the read PairPath [_paths=[[986, 997], []]](2) enforces the sub-path ([986, 997]) -found: 2 reads supporting subpath. the sub-path ([986, 997]) has PASSED Successful extension of 997 to generate path [-1, 986, 997] updateReadsOfPath: [-1, 986, 997] read PairPath [_paths=[[986, 997], []]] is consistent with 997 pct_contained_propagated: 50.0% 997 was added to the queue QUEUE IS: [CCTCATCAGCAAGAAGAAATCTTT:W7(V993_982_D1), GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1)] #### getAllProbablePaths() The next node in the queue C is 993 butterfly pct done: 4 / 8 = 50.0% pct done. ReadsStartingAtV_START_BFLY, Node: 993 read: PairPath [_paths=[[993, 994, 997], []]] Exploring extension of: 1 paths that end at vertex: 993 == Current Paths Constructed Up To Vertex: 993 : PathPartialReconstruction@[993] : [-1, 992, 993] Adding the reads {PairPath [_paths=[[993, 994, 997], []]]=2} to the path [-1, 992, 993] ################################################ ###### Exploring extension of v: 993 by successor: 994 ################################################ Count of paths ending at v: 993 = 1 path_ending_at_v: [-1, 992, 993] # [PathCounter(994)=0 Examining potential extension of path ending at node V: 993 by successor: 994, via path=[-1, 992, 993] TripletMapper doesnt contain node: 993 ReadsOfPathUntilV: PATH: [-1, 992, 993] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [-1, 992, 993, 994] -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993, 994] => true examining subPath: [-1, 992, 993, 994] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :true the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) enforces the sub-path ([-1, 992, 993, 994]) -found: 2 reads supporting subpath. the sub-path ([-1, 992, 993, 994]) has PASSED Successful extension of 994 to generate path [-1, 992, 993, 994] updateReadsOfPath: [-1, 992, 993, 994] read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 994 read PairPath [_paths=[[992, 993, 994, 997], []]] is consistent with 994 read PairPath [_paths=[[993, 994, 997], []]] is consistent with 994 pct_contained_propagated: 25.0% 994 was added to the queue QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1), CTTTCCAAGTA:W8(V994_440_D2)] * delaying tackling vertex: 997 since a parent hasn't been visited yet. #### getAllProbablePaths() The next node in the queue C is 994 butterfly pct done: 5 / 8 = 62.5% pct done. ReadsStartingAtV_START_BFLY994 EMPTY Exploring extension of: 1 paths that end at vertex: 994 == Current Paths Constructed Up To Vertex: 994 : PathPartialReconstruction@[994] : [-1, 992, 993, 994] ################################################ ###### Exploring extension of v: 994 by successor: 997 ################################################ Count of paths ending at v: 994 = 1 path_ending_at_v: [-1, 992, 993, 994] # [PathCounter(997)=0 Examining potential extension of path ending at node V: 994 by successor: 997, via path=[-1, 992, 993, 994] TripletMapper doesnt contain node: 994 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [994, 997] -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997] => true examining subPath: [994, 997] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :true the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) enforces the sub-path ([994, 997]) -found: 2 reads supporting subpath. the sub-path ([994, 997]) has PASSED Successful extension of 997 to generate path [-1, 992, 993, 994, 997] updateReadsOfPath: [-1, 992, 993, 994, 997] read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 997 read PairPath [_paths=[[992, 993, 994, 997], []]] is consistent with 997 read PairPath [_paths=[[993, 994, 997], []]] is consistent with 997 pct_contained_propagated: 25.0% QUEUE IS: [GTGTCTTAAC...GAAGCTCCCT:W6(V997_451_D1)] #### getAllProbablePaths() The next node in the queue C is 997 butterfly pct done: 6 / 8 = 75.0% pct done. ReadsStartingAtV_START_BFLY, Node: 997 read: PairPath [_paths=[[997, 984], []]] ReadsStartingAtV_START_BFLY, Node: 997 read: PairPath [_paths=[[997, 984, 996], []]] Exploring extension of: 2 paths that end at vertex: 997 == Current Paths Constructed Up To Vertex: 997 : PathPartialReconstruction@[997] : [-1, 986, 997] PathPartialReconstruction@[997] : [-1, 992, 993, 994, 997] Adding the reads {PairPath [_paths=[[997, 984], []]]=2, PairPath [_paths=[[997, 984, 996], []]]=6} to the path [-1, 986, 997] Adding the reads {PairPath [_paths=[[997, 984], []]]=2, PairPath [_paths=[[997, 984, 996], []]]=6} to the path [-1, 992, 993, 994, 997] ################################################ ###### Exploring extension of v: 997 by successor: 984 ################################################ Count of paths ending at v: 997 = 2 path_ending_at_v: [-1, 992, 993, 994, 997] path_ending_at_v: [-1, 986, 997] # [PathCounter(984)=0 Examining potential extension of path ending at node V: 997 by successor: 984, via path=[-1, 992, 993, 994, 997] TripletMapper doesnt contain node: 997 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [997, 984] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984] => true examining subPath: [997, 984] for reinforcement by read: [[997, 984], []] :true the read PairPath [_paths=[[997, 984], []]](2) enforces the sub-path ([997, 984]) -found: 2 reads supporting subpath. the sub-path ([997, 984]) has PASSED Successful extension of 984 to generate path [-1, 992, 993, 994, 997, 984] updateReadsOfPath: [-1, 992, 993, 994, 997, 984] read PairPath [_paths=[[997, 984], []]] is consistent with 984 read PairPath [_paths=[[997, 984, 996], []]] is consistent with 984 read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 984 pct_contained_propagated: 50.0% # [PathCounter(984)=1 Examining potential extension of path ending at node V: 997 by successor: 984, via path=[-1, 986, 997] TripletMapper doesnt contain node: 997 ReadsOfPathUntilV: PATH: [-1, 986, 997] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] -checking if subPath has enough read support. Exploring sub path: [997, 984] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984] => true examining subPath: [997, 984] for reinforcement by read: [[997, 984], []] :true the read PairPath [_paths=[[997, 984], []]](2) enforces the sub-path ([997, 984]) -found: 2 reads supporting subpath. the sub-path ([997, 984]) has PASSED Successful extension of 984 to generate path [-1, 986, 997, 984] updateReadsOfPath: [-1, 986, 997, 984] read PairPath [_paths=[[997, 984], []]] is consistent with 984 read PairPath [_paths=[[997, 984, 996], []]] is consistent with 984 pct_contained_propagated: 50.0% 984 was added to the queue QUEUE IS: [GAGCACTCTGAACCCTGTGAGGCA:W6(V984_981_D2)] #### getAllProbablePaths() The next node in the queue C is 984 butterfly pct done: 7 / 8 = 87.5% pct done. ReadsStartingAtV_START_BFLY, Node: 984 read: PairPath [_paths=[[984, 996], []]] Exploring extension of: 2 paths that end at vertex: 984 == Current Paths Constructed Up To Vertex: 984 : PathPartialReconstruction@[984] : [-1, 992, 993, 994, 997, 984] PathPartialReconstruction@[984] : [-1, 986, 997, 984] Adding the reads {PairPath [_paths=[[984, 996], []]]=2} to the path [-1, 992, 993, 994, 997, 984] Adding the reads {PairPath [_paths=[[984, 996], []]]=2} to the path [-1, 986, 997, 984] ################################################ ###### Exploring extension of v: 984 by successor: 996 ################################################ Count of paths ending at v: 984 = 2 path_ending_at_v: [-1, 992, 993, 994, 997, 984] path_ending_at_v: [-1, 986, 997, 984] # [PathCounter(996)=0 Examining potential extension of path ending at node V: 984 by successor: 996, via path=[-1, 992, 993, 994, 997, 984] TripletMapper doesnt contain node: 984 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997, 984] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [996] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996] => false examining subPath: [996] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996] => true examining subPath: [996] for reinforcement by read: [[997, 984, 996], []] :true the read PairPath [_paths=[[997, 984, 996], []]](6) enforces the sub-path ([996]) -found: 6 reads supporting subpath. the sub-path ([996]) has PASSED Successful extension of 996 to generate path [-1, 992, 993, 994, 997, 984, 996] updateReadsOfPath: [-1, 992, 993, 994, 997, 984, 996] read PairPath [_paths=[[997, 984, 996], []]] is consistent with 996 read PairPath [_paths=[[984, 996], []]] is consistent with 996 read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is consistent with 996 pct_contained_propagated: 57.14286% # [PathCounter(996)=1 Examining potential extension of path ending at node V: 984 by successor: 996, via path=[-1, 986, 997, 984] TripletMapper doesnt contain node: 984 ReadsOfPathUntilV: PATH: [-1, 986, 997, 984] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] -checking if subPath has enough read support. Exploring sub path: [996] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984, 996] => false examining subPath: [996] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 986, 997, 984, 996] => true examining subPath: [996] for reinforcement by read: [[997, 984, 996], []] :true the read PairPath [_paths=[[997, 984, 996], []]](6) enforces the sub-path ([996]) -found: 6 reads supporting subpath. the sub-path ([996]) has PASSED Successful extension of 996 to generate path [-1, 986, 997, 984, 996] updateReadsOfPath: [-1, 986, 997, 984, 996] read PairPath [_paths=[[997, 984, 996], []]] is consistent with 996 read PairPath [_paths=[[984, 996], []]] is consistent with 996 pct_contained_propagated: 60.000004% 996 was added to the queue QUEUE IS: [AGTCCACCAC...GGGAGCCACC:W6(V996_549_D3)] #### getAllProbablePaths() The next node in the queue C is 996 butterfly pct done: 8 / 8 = 100.0% pct done. ReadsStartingAtV_START_BFLY, Node: 996 read: PairPath [_paths=[[996, 991], []]] ReadsStartingAtV_START_BFLY, Node: 996 read: PairPath [_paths=[[996], []]] Exploring extension of: 2 paths that end at vertex: 996 == Current Paths Constructed Up To Vertex: 996 : PathPartialReconstruction@[996] : [-1, 992, 993, 994, 997, 984, 996] PathPartialReconstruction@[996] : [-1, 986, 997, 984, 996] Adding the reads {PairPath [_paths=[[996, 991], []]]=4, PairPath [_paths=[[996], []]]=14} to the path [-1, 992, 993, 994, 997, 984, 996] Adding the reads {PairPath [_paths=[[996, 991], []]]=4, PairPath [_paths=[[996], []]]=14} to the path [-1, 986, 997, 984, 996] ################################################ ###### Exploring extension of v: 996 by successor: 991 ################################################ Count of paths ending at v: 996 = 2 path_ending_at_v: [-1, 992, 993, 994, 997, 984, 996] path_ending_at_v: [-1, 986, 997, 984, 996] # [PathCounter(991)=0 Examining potential extension of path ending at node V: 996 by successor: 991, via path=[-1, 992, 993, 994, 997, 984, 996] TripletMapper doesnt contain node: 996 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997, 984, 996] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991] => true examining subPath: [996, 991] for reinforcement by read: [[996, 991], []] :true the read PairPath [_paths=[[996, 991], []]](4) enforces the sub-path ([996, 991]) -found: 4 reads supporting subpath. the sub-path ([996, 991]) has PASSED Successful extension of 991 to generate path [-1, 992, 993, 994, 997, 984, 996, 991] updateReadsOfPath: [-1, 992, 993, 994, 997, 984, 996, 991] read PairPath [_paths=[[996, 991], []]] is consistent with 991 read PairPath [_paths=[[996], []]] is consistent with 991 pct_contained_propagated: 77.77778% # [PathCounter(991)=1 Examining potential extension of path ending at node V: 996 by successor: 991, via path=[-1, 986, 997, 984, 996] TripletMapper doesnt contain node: 996 ReadsOfPathUntilV: PATH: [-1, 986, 997, 984, 996] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[986, 997], []]] -checking if pp: PairPath [_paths=[[986, 997], []]] supports extension of [-1, 986, 997, 984, 996, 991] => false examining subPath: [996, 991] for reinforcement by read: [[986, 997], []] :false the read PairPath [_paths=[[986, 997], []]](2) does not enforce the sub-path ([996, 991]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 986, 997, 984, 996, 991] => true examining subPath: [996, 991] for reinforcement by read: [[996, 991], []] :true the read PairPath [_paths=[[996, 991], []]](4) enforces the sub-path ([996, 991]) -found: 4 reads supporting subpath. the sub-path ([996, 991]) has PASSED Successful extension of 991 to generate path [-1, 986, 997, 984, 996, 991] updateReadsOfPath: [-1, 986, 997, 984, 996, 991] read PairPath [_paths=[[996, 991], []]] is consistent with 991 read PairPath [_paths=[[996], []]] is consistent with 991 pct_contained_propagated: 71.42857% 991 was added to the queue QUEUE IS: [AGCCACAGGT...CTTCCTGTGA:W5(V991_717_D4)] #### getAllProbablePaths() The next node in the queue C is 991 butterfly pct done: 9 / 8 = 112.5% pct done. ReadsStartingAtV_START_BFLY, Node: 991 read: PairPath [_paths=[[991, -2], []]] Exploring extension of: 2 paths that end at vertex: 991 == Current Paths Constructed Up To Vertex: 991 : PathPartialReconstruction@[991] : [-1, 992, 993, 994, 997, 984, 996, 991] PathPartialReconstruction@[991] : [-1, 986, 997, 984, 996, 991] Adding the reads {PairPath [_paths=[[991, -2], []]]=1} to the path [-1, 992, 993, 994, 997, 984, 996, 991] Adding the reads {PairPath [_paths=[[991, -2], []]]=1} to the path [-1, 986, 997, 984, 996, 991] ################################################ ###### Exploring extension of v: 991 by successor: -2 ################################################ Count of paths ending at v: 991 = 2 path_ending_at_v: [-1, 992, 993, 994, 997, 984, 996, 991] path_ending_at_v: [-1, 986, 997, 984, 996, 991] # [PathCounter(-2)=0 Examining potential extension of path ending at node V: 991 by successor: -2, via path=[-1, 992, 993, 994, 997, 984, 996, 991] TripletMapper doesnt contain node: 991 ReadsOfPathUntilV: PATH: [-1, 992, 993, 994, 997, 984, 996, 991] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[992, 993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[993, 994, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[991, -2], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 992], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991, -2] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996, 991], []] :false the read PairPath [_paths=[[996, 991], []]](4) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[984, 996], []]] -checking if pp: PairPath [_paths=[[984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[984, 996], []] :false the read PairPath [_paths=[[984, 996], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[992, 993, 994, 997, 984, 996], []] :false the read PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[992, 993, 994, 997], []]] -checking if pp: PairPath [_paths=[[992, 993, 994, 997], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[992, 993, 994, 997], []] :false the read PairPath [_paths=[[992, 993, 994, 997], []]](6) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[993, 994, 997], []]] -checking if pp: PairPath [_paths=[[993, 994, 997], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[993, 994, 997], []] :false the read PairPath [_paths=[[993, 994, 997], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996], []]] -checking if pp: PairPath [_paths=[[996], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996], []] :false the read PairPath [_paths=[[996], []]](14) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[991, -2], []]] -checking if pp: PairPath [_paths=[[991, -2], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[991, -2], []] :false the read PairPath [_paths=[[991, -2], []]](1) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[-1, 992], []]] -checking if pp: PairPath [_paths=[[-1, 992], []]] supports extension of [-1, 992, 993, 994, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[-1, 992], []] :false the read PairPath [_paths=[[-1, 992], []]](1) does not enforce the sub-path ([996, 991, -2]) -found: 0 reads supporting subpath. the sub-path ([996, 991, -2]) has NOT PASSED Successful extension of -2 to generate path [-1, 992, 993, 994, 997, 984, 996, 991, -2] updateReadsOfPath: [-1, 992, 993, 994, 997, 984, 996, 991, -2] read PairPath [_paths=[[991, -2], []]] is consistent with -2 pct_contained_propagated: 90.0% # [PathCounter(-2)=1 Examining potential extension of path ending at node V: 991 by successor: -2, via path=[-1, 986, 997, 984, 996, 991] TripletMapper doesnt contain node: 991 ReadsOfPathUntilV: PATH: [-1, 986, 997, 984, 996, 991] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[997, 984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[-1, 986], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[986, 997], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996, 991], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[984, 996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[996], []]] ReadsOfPathUntiV: READ: PairPath [_paths=[[991, -2], []]] -checking if subPath has enough read support. Exploring sub path: [996, 991, -2] -readsOfPathUntilV: PairPath [_paths=[[997, 984], []]] -checking if pp: PairPath [_paths=[[997, 984], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984], []] :false the read PairPath [_paths=[[997, 984], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[997, 984, 996], []]] -checking if pp: PairPath [_paths=[[997, 984, 996], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[997, 984, 996], []] :false the read PairPath [_paths=[[997, 984, 996], []]](6) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[-1, 986], []]] -checking if pp: PairPath [_paths=[[-1, 986], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[-1, 986], []] :false the read PairPath [_paths=[[-1, 986], []]](1) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[986, 997], []]] -checking if pp: PairPath [_paths=[[986, 997], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[986, 997], []] :false the read PairPath [_paths=[[986, 997], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996, 991], []]] -checking if pp: PairPath [_paths=[[996, 991], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996, 991], []] :false the read PairPath [_paths=[[996, 991], []]](4) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[984, 996], []]] -checking if pp: PairPath [_paths=[[984, 996], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[984, 996], []] :false the read PairPath [_paths=[[984, 996], []]](2) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[996], []]] -checking if pp: PairPath [_paths=[[996], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[996], []] :false the read PairPath [_paths=[[996], []]](14) does not enforce the sub-path ([996, 991, -2]) -readsOfPathUntilV: PairPath [_paths=[[991, -2], []]] -checking if pp: PairPath [_paths=[[991, -2], []]] supports extension of [-1, 986, 997, 984, 996, 991, -2] => false examining subPath: [996, 991, -2] for reinforcement by read: [[991, -2], []] :false the read PairPath [_paths=[[991, -2], []]](1) does not enforce the sub-path ([996, 991, -2]) -found: 0 reads supporting subpath. the sub-path ([996, 991, -2]) has NOT PASSED Successful extension of -2 to generate path [-1, 986, 997, 984, 996, 991, -2] updateReadsOfPath: [-1, 986, 997, 984, 996, 991, -2] read PairPath [_paths=[[991, -2], []]] is consistent with -2 pct_contained_propagated: 87.5% -2 was added to the queue QUEUE IS: [:W-1(V-2_D-1)] #### getAllProbablePaths() The next node in the queue C is -2 butterfly pct done: 10 / 8 = 125.0% pct done. ReadsStartingAtV_START_BFLY-2 EMPTY Exploring extension of: 2 paths that end at vertex: -2 == Current Paths Constructed Up To Vertex: -2 : PathPartialReconstruction@[-2] : [-1, 992, 993, 994, 997, 984, 996, 991, -2] PathPartialReconstruction@[-2] : [-1, 986, 997, 984, 996, 991, -2] the finished path: [-1, 992, 993, 994, 997, 984, 996, 991, -2] was added to the final paths, with 40 support the finished path: [-1, 986, 997, 984, 996, 991, -2] was added to the final paths, with 32 support -reconstructing sequence for path[: 1 of 2]: [-1, 986, 997, 984, 996, 991, -2] -reconstructing sequence for path[: 2 of 2]: [-1, 992, 993, 994, 997, 984, 996, 991, -2] **** Removing identical subsequences among: 2 paths. [0,1] FinalPath@BeforeFiltering: [-1, 986, 997, 984, 996, 991, -2] FinalPath@BeforeFiltering: [-1, 992, 993, 994, 997, 984, 996, 991, -2] ReadMappings BEFORE Path-to-orig_ID conversion: ## assignCompatibleReadsToPaths() assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 986], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 992], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[993, 994, 997], []]] is NOT compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996, 991], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984, 996], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[984, 996], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[986, 997], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[991, -2], []]] is compatible with [-1, 986, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[992, 993, 994, 997], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 986], []]] is NOT compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[-1, 992], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[993, 994, 997], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996, 991], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[997, 984, 996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[984, 996], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[986, 997], []]] is NOT compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] assignCompatibleReadsToPaths: PairPath [_paths=[[991, -2], []]] is compatible with [-1, 992, 993, 994, 997, 984, 996, 991, -2] PRELIM_FINAL_PATH: [-1, 986, 997, 984, 996, 991, -2] contains: PairPath [_paths=[[997, 984], []]] count: 2 PairPath [_paths=[[997, 984, 996], []]] count: 6 PairPath [_paths=[[-1, 986], []]] count: 1 PairPath [_paths=[[996, 991], []]] count: 4 PairPath [_paths=[[986, 997], []]] count: 2 PairPath [_paths=[[984, 996], []]] count: 2 PairPath [_paths=[[996], []]] count: 14 PairPath [_paths=[[991, -2], []]] count: 1 Total support: 32 PRELIM_FINAL_PATH: [-1, 992, 993, 994, 997, 984, 996, 991, -2] contains: PairPath [_paths=[[997, 984], []]] count: 2 PairPath [_paths=[[997, 984, 996], []]] count: 6 PairPath [_paths=[[996, 991], []]] count: 4 PairPath [_paths=[[984, 996], []]] count: 2 PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]] count: 2 PairPath [_paths=[[992, 993, 994, 997], []]] count: 6 PairPath [_paths=[[993, 994, 997], []]] count: 2 PairPath [_paths=[[996], []]] count: 14 PairPath [_paths=[[991, -2], []]] count: 1 PairPath [_paths=[[-1, 992], []]] count: 1 Total support: 40 ## ILLUSTRATING FINAL ASSEMBLIES PATH: [-1, 986, 997, 984, 996, 991, -2] Path Illustration: ======= PATH: [-1, 986, 997, 984, 996, 991, -2] == Read: [[-1, 986], []] read_support: 1 == Read: [[986, 997], []] read_support: 2 == Read: [[997, 984], []] read_support: 2 === Read: [[997, 984, 996], []] read_support: 6 == Read: [[984, 996], []] read_support: 2 == Read: [[996, 991], []] read_support: 4 = Read: [[996], []] read_support: 14 == Read: [[991, -2], []] read_support: 1 PATH: [-1, 992, 993, 994, 997, 984, 996, 991, -2] Path Illustration: ========= PATH: [-1, 992, 993, 994, 997, 984, 996, 991, -2] == Read: [[-1, 992], []] read_support: 1 ====== Read: [[992, 993, 994, 997, 984, 996], []] read_support: 2 ==== Read: [[992, 993, 994, 997], []] read_support: 6 === Read: [[993, 994, 997], []] read_support: 2 == Read: [[997, 984], []] read_support: 2 === Read: [[997, 984, 996], []] read_support: 6 == Read: [[984, 996], []] read_support: 2 == Read: [[996, 991], []] read_support: 4 = Read: [[996], []] read_support: 14 == Read: [[991, -2], []] read_support: 1 Converting graph node IDs back to original IDs. -final_path: [-1, 986, 997, 984, 996, 991, -2] now set to: [-1, 945, 451, 981, 549, 717, -2] -and set to contents: <32, 0> pp: PairPath [_paths=[[997, 984], []]], updated_pp: PairPath [_paths=[[451, 981], []]], count: 2 pp: PairPath [_paths=[[997, 984, 996], []]], updated_pp: PairPath [_paths=[[451, 981, 549], []]], count: 6 pp: PairPath [_paths=[[-1, 986], []]], updated_pp: PairPath [_paths=[[-1, 945], []]], count: 1 pp: PairPath [_paths=[[996, 991], []]], updated_pp: PairPath [_paths=[[549, 717], []]], count: 4 pp: PairPath [_paths=[[986, 997], []]], updated_pp: PairPath [_paths=[[945, 451], []]], count: 2 pp: PairPath [_paths=[[984, 996], []]], updated_pp: PairPath [_paths=[[981, 549], []]], count: 2 pp: PairPath [_paths=[[996], []]], updated_pp: PairPath [_paths=[[549], []]], count: 14 pp: PairPath [_paths=[[991, -2], []]], updated_pp: PairPath [_paths=[[717, -2], []]], count: 1 -final_path: [-1, 992, 993, 994, 997, 984, 996, 991, -2] now set to: [-1, 380, 982, 440, 451, 981, 549, 717, -2] -and set to contents: <40, 0> pp: PairPath [_paths=[[997, 984], []]], updated_pp: PairPath [_paths=[[451, 981], []]], count: 2 pp: PairPath [_paths=[[997, 984, 996], []]], updated_pp: PairPath [_paths=[[451, 981, 549], []]], count: 6 pp: PairPath [_paths=[[996, 991], []]], updated_pp: PairPath [_paths=[[549, 717], []]], count: 4 pp: PairPath [_paths=[[984, 996], []]], updated_pp: PairPath [_paths=[[981, 549], []]], count: 2 pp: PairPath [_paths=[[992, 993, 994, 997, 984, 996], []]], updated_pp: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]], count: 2 pp: PairPath [_paths=[[992, 993, 994, 997], []]], updated_pp: PairPath [_paths=[[380, 982, 440, 451], []]], count: 6 pp: PairPath [_paths=[[993, 994, 997], []]], updated_pp: PairPath [_paths=[[982, 440, 451], []]], count: 2 pp: PairPath [_paths=[[996], []]], updated_pp: PairPath [_paths=[[549], []]], count: 14 pp: PairPath [_paths=[[991, -2], []]], updated_pp: PairPath [_paths=[[717, -2], []]], count: 1 pp: PairPath [_paths=[[-1, 992], []]], updated_pp: PairPath [_paths=[[-1, 380], []]], count: 1 ** Post-original ID conversion, path support: PRELIM_FINAL_PATH: [-1, 945, 451, 981, 549, 717, -2] contains: PairPath [_paths=[[549, 717], []]] count: 4 PairPath [_paths=[[945, 451], []]] count: 2 PairPath [_paths=[[717, -2], []]] count: 1 PairPath [_paths=[[451, 981, 549], []]] count: 6 PairPath [_paths=[[451, 981], []]] count: 2 PairPath [_paths=[[549], []]] count: 14 PairPath [_paths=[[-1, 945], []]] count: 1 PairPath [_paths=[[981, 549], []]] count: 2 Total support: 32 PRELIM_FINAL_PATH: [-1, 380, 982, 440, 451, 981, 549, 717, -2] contains: PairPath [_paths=[[549, 717], []]] count: 4 PairPath [_paths=[[982, 440, 451], []]] count: 2 PairPath [_paths=[[-1, 380], []]] count: 1 PairPath [_paths=[[717, -2], []]] count: 1 PairPath [_paths=[[451, 981, 549], []]] count: 6 PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] count: 2 PairPath [_paths=[[451, 981], []]] count: 2 PairPath [_paths=[[549], []]] count: 14 PairPath [_paths=[[981, 549], []]] count: 2 PairPath [_paths=[[380, 982, 440, 451], []]] count: 6 Total support: 40 SECTION ========= CD-HIT -like Removal of Too-Similar Sequences with Lesser Read Support ========= **** CD-HIT style path collapsing at end of run. [0,1] **** checking twoPathsAreTooSimilar ([-1, 380, 982, 440, 451, 981, 549, 717, -2],[-1, 945, 451, 981, 549, 717, -2]) **** getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Path2: [-1, 945, 451, 981, 549, 717, -2] Paths [-1, 380, 982, 440, 451, 981, 549, 717, -2][-1, 945, 451, 981, 549, 717, -2] share node 717 getting prefix alignment for [-1, 380, 982, 440, 451, 981, 549][-1, 945, 451, 981, 549] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549] Path2: [-1, 945, 451, 981, 549] Paths [-1, 380, 982, 440, 451, 981, 549][-1, 945, 451, 981, 549] share node 549 getting prefix alignment for [-1, 380, 982, 440, 451, 981][-1, 945, 451, 981] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981] Path2: [-1, 945, 451, 981] Paths [-1, 380, 982, 440, 451, 981][-1, 945, 451, 981] share node 981 getting prefix alignment for [-1, 380, 982, 440, 451][-1, 945, 451] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451] Path2: [-1, 945, 451] Paths [-1, 380, 982, 440, 451][-1, 945, 451] share node 451 getting prefix alignment for [-1, 380, 982, 440][-1, 945] getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440] Path2: [-1, 945] -no shared node, alignment not cached, computing: [-1, 380, 982, 440] to [-1, 945] -path1s length: 94, path2s length: 59 -running Needleman-Wunsch alignment of path sequences Jan 01, 2019 11:15:02 PM jaligner.NeedlemanWunschGotoh construct INFO: Started... Jan 01, 2019 11:15:02 PM jaligner.NeedlemanWunschGotoh construct INFO: Finished. Jan 01, 2019 11:15:02 PM jaligner.NeedlemanWunschGotoh traceback INFO: Started... Jan 01, 2019 11:15:02 PM jaligner.NeedlemanWunschGotoh traceback INFO: Finished. A 1 GGCCACACGATGGCTTATCACGTCCACATTTCTACTGGCTACAAACAGAC 50 .|..||||||..|.| B 1 -----------------------------------AGAATACAAAATGCC 15 A 51 TTCCTCAAGCCTCATCAGCAAGAAGAAATCTTTCTTTCCAAGTA 94 ||||||.|||||||||||||.||||||||||||||||||||||| B 16 TTCCTCCAGCCTCATCAGCAGGAAGAAATCTTTCTTTCCAAGTA 59 Percent A in alignment = 59 / 94 = 62.765957% Percent B in alignment = 59 / 59 = 100.0% Matches: 51, Mismatches: 8, gaps: 0, align_len: 59 percent_identity: 86.440674, percent_gapped: 0.0 max_percent_aligned: 100.0 max internal gap length: 0 (start of graph) Total number of significant alignment diffs = (mismatches: 8 + internal_gaps: 0 + right_gap_len: 0 = 8 AlignmentStats: matches: 51, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440] and [-1, 945] : matches: 51, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [451] Path2: [451] paths are equivalent: Path1:[451], Path2:[451] and have alignment stats:matches: 97, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [][] getPrevCalcNumMismatches: Path1: [] Path2: [] suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 148, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440, 451] and [-1, 945, 451] : matches: 148, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [981] Path2: [981] paths are equivalent: Path1:[981], Path2:[981] and have alignment stats:matches: 47, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [][] getPrevCalcNumMismatches: Path1: [] Path2: [] key: [];[], cached as: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 195, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440, 451, 981] and [-1, 945, 451, 981] : matches: 195, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [549] Path2: [549] paths are equivalent: Path1:[549], Path2:[549] and have alignment stats:matches: 191, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [][] getPrevCalcNumMismatches: Path1: [] Path2: [] key: [];[], cached as: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 386, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 path prefix alignment stats for: [-1, 380, 982, 440, 451, 981, 549] and [-1, 945, 451, 981, 549] : matches: 386, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 getPrevCalcNumMismatches: Path1: [717] Path2: [717] paths are equivalent: Path1:[717], Path2:[717] and have alignment stats:matches: 65, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 getting suffix alignment for: [-2][-2] getPrevCalcNumMismatches: Path1: [-2] Path2: [-2] suffix alignment stats: matches: 0, mismatches: 0, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 0 combining suffix and prefix alignment stats: matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 the two paths have these stats: numMM=8, max_internal_gap_length=0, identity=97.82%, tooSimilar: false ==== Running PATH alignment of : [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] :: numMM:8, max_internal_gap: 0, path_per_id = 97.82, tooSimilar: false matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 *** REDUCE: they are PLENTY DIFFERENT *** SECTION ========= CD-HIT -like Removal of Too-Similar Sequences with Lesser Read Support ========= **** CD-HIT style path collapsing at end of run. [0,1] **** checking twoPathsAreTooSimilar ([-1, 380, 982, 440, 451, 981, 549, 717, -2],[-1, 945, 451, 981, 549, 717, -2]) **** getPrevCalcNumMismatches: Path1: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Path2: [-1, 945, 451, 981, 549, 717, -2] key: [-1, 945, 451, 981, 549, 717, -2];[-1, 380, 982, 440, 451, 981, 549, 717, -2], cached as: matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 the two paths have these stats: numMM=8, max_internal_gap_length=0, identity=97.82%, tooSimilar: false ==== Running PATH alignment of : [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] :: numMM:8, max_internal_gap: 0, path_per_id = 97.82, tooSimilar: false matches: 451, mismatches: 8, internal gaps: 0, left_gap: 0, right_gap: 0, total_diffs: 8 *** REDUCE: they are PLENTY DIFFERENT *** Grouping paths into genes Isoform_overlap: Path_i:[-1, 380, 982, 440, 451, 981, 549, 717, -2], Path_j: [-1, 945, 451, 981, 549, 717, -2], overlap = 87.14597% IsoformEdge linking: [-1, 380, 982, 440, 451, 981, 549, 717, -2] to [-1, 945, 451, 981, 549, 717, -2] IsoformClustering, number of clusters = 1 GeneCluster[1] contains: [-1, 945, 451, 981, 549, 717, -2] GeneCluster[1] contains: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Sep Gene IDs:{[-1, 945, 451, 981, 549, 717, -2]=1, [-1, 380, 982, 440, 451, 981, 549, 717, -2]=1} SECTION ====== ## BFLY_EM_REDUCE ## ========== EM on: 2 paths. // initializing EM (round 0) Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.4291335 sum_frags=17.5 FRAGS_ASSIGNED: [2.0, 50.0%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.5, 50.0%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.0, 50.0%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [7.0, 50.0%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.57086647 sum_frags=25.5 FRAGS_ASSIGNED: [2.0, 50.0%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.5, 50.0%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.0, 50.0%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [7.0, 50.0%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 50.0%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] ============================================ EM-round[0] #### ACCOUNTING FOR EXPR VALUES expr: 0.4291335 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.57086647 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 sum_pp_log_likelihood: -23.833495394134374 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -13.608721939671875 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -13.037947638954698 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.518973819477349 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.9583738485335935 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.75024309120156 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -13.037947638954698 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.916747697067187 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.4172338794703 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -6.804360969835938 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.916747697067187 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -39.113842916864094 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] ============================================ EM-round[1] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.4291335 sum_frags=15.444872 FRAGS_ASSIGNED: [1.7165341, 42.913353%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.42913353, 42.913353%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [2.5748012, 42.913353%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.85826707, 42.913353%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [6.0078697, 42.913357%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.85826707, 42.913353%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.57086647 sum_frags=27.555128 FRAGS_ASSIGNED: [2.2834659, 57.086647%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.57086647, 57.086647%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.4251988, 57.086647%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.1417329, 57.086647%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [7.9921303, 57.086647%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.1417329, 57.086647%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.851084579736636 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -13.858569839950583 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.882927091892052 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.441463545946026 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.962771144934159 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.776626869604954 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.882927091892052 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.925542289868318 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.47879602907823 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -6.9292849199752915 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.925542289868318 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.64878127567616 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[1] Prev: -264.91464, curr: -264.56433, delta: 0.35031128 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.38040692 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.6195931 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[2] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.38040692 sum_frags=14.0318 FRAGS_ASSIGNED: [1.5216277, 38.04069%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.38040692, 38.04069%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [2.2824416, 38.040695%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.76081383, 38.04069%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [5.325697, 38.04069%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.76081383, 38.04069%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.6195931 sum_frags=28.968197 FRAGS_ASSIGNED: [2.478372, 61.9593%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.619593, 61.9593%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.7175581, 61.9593%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.239186, 61.9593%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [8.674302, 61.9593%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.239186, 61.9593%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.863223915046387 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.050471368066567 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.782907194791283 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.391453597395642 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.965805978761597 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.79483587256958 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.782907194791283 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.931611957523193 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.52128370266236 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.025235684033284 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.931611957523193 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.34872158437385 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[2] Prev: -264.56433, curr: -264.39005, delta: 0.17428589 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.34665343 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.65334654 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[3] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.34665343 sum_frags=13.052951 FRAGS_ASSIGNED: [1.3866138, 34.665344%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.34665346, 34.665344%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [2.0799208, 34.665344%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.6933069, 34.665344%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.8531485, 34.665344%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.6933069, 34.665344%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.65334654 sum_frags=29.947048 FRAGS_ASSIGNED: [2.6133862, 65.334656%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.65334654, 65.334656%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [3.9200792, 65.334656%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.3066931, 65.334656%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.146852, 65.334656%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.3066931, 65.334656%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.871654349975895 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.195095277929715 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.71644277516921 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.358221387584605 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.967913587493974 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.80748152496384 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.71644277516921 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.935827174987947 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.55079022491563 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.0975476389648575 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.935827174987947 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.149328325507625 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[3] Prev: -264.39005, curr: -264.30258, delta: 0.08746338 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.3231515 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.67684853 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[4] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.3231515 sum_frags=12.371393 FRAGS_ASSIGNED: [1.292606, 32.31515%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.3231515, 32.31515%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.938909, 32.31515%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.646303, 32.31515%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.524121, 32.31515%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.646303, 32.31515%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.67684853 sum_frags=30.628607 FRAGS_ASSIGNED: [2.7073941, 67.68485%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.67684853, 67.68485%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.0610914, 67.68486%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.3536971, 67.68485%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.47588, 67.68485%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.3536971, 67.68485%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.87753497919904 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.302350298549943 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.671435565613965 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.335717782806983 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.96938374479976 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.81630246879856 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.671435565613965 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.93876748959952 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.57137242719665 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.151175149274971 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.93876748959952 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -38.0143066968419 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[4] Prev: -264.30258, curr: -264.25854, delta: 0.044036865 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.30672878 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.6932712 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[5] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.30672878 sum_frags=11.895135 FRAGS_ASSIGNED: [1.2269151, 30.672878%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.30672878, 30.672878%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.8403727, 30.672878%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.61345756, 30.672878%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.294203, 30.672878%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.61345756, 30.672878%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.6932712 sum_frags=31.104862 FRAGS_ASSIGNED: [2.7730846, 69.32712%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.69327116, 69.32712%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.159627, 69.32712%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.3865423, 69.32712%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.705796, 69.32712%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.3865423, 69.32712%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.88164963914862 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.38086508513366 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.640575967216929 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.320287983608464 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.970412409787155 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.82247445872293 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.640575967216929 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.94082481957431 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.58577373702016 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.19043254256683 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.94082481957431 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -37.92172790165078 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[5] Prev: -264.25854, curr: -264.23642, delta: 0.022125244 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.29522422 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.70477575 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[6] Total frags: 43.0 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.29522422 sum_frags=11.561502 FRAGS_ASSIGNED: [1.1808969, 29.522423%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.29522422, 29.522423%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.7713454, 29.522423%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.59044844, 29.522423%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.133139, 29.522423%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.59044844, 29.522423%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.70477575 sum_frags=31.438498 FRAGS_ASSIGNED: [2.819103, 70.47758%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.70477575, 70.47758%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.2286544, 70.47758%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.4095515, 70.47758%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.86686, 70.47758%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.4095515, 70.47758%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.88453453877154 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.437762328772989 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.619238094761245 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.309619047380623 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.971133634692885 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.82680180815731 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.619238094761245 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.94226726938577 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.59587088570039 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.218881164386494 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.94226726938577 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -37.85771428428374 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[6] Prev: -264.23642, curr: -264.22534, delta: 0.011077881 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.28715086 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.71284914 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 ============================================ EM-round[7] Total frags: 43.000004 Frag assignment for trans: [-1, 945, 451, 981, 549, 717, -2] len=367 expr=0.28715086 sum_frags=11.327374 FRAGS_ASSIGNED: [1.1486034, 28.715086%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[945, 451], []]] FRAGS_ASSIGNED: [0.28715086, 28.715086%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [1.7229052, 28.715086%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [0.5743017, 28.715086%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [4.020112, 28.715086%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 945], []]] FRAGS_ASSIGNED: [0.5743017, 28.715086%] for read: PairPath [_paths=[[981, 549], []]] Frag assignment for trans: [-1, 380, 982, 440, 451, 981, 549, 717, -2] len=402 expr=0.71284914 sum_frags=31.672628 FRAGS_ASSIGNED: [2.8513968, 71.28492%] for read: PairPath [_paths=[[549, 717], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[982, 440, 451], []]] FRAGS_ASSIGNED: [1.0, 100.0%] for read: PairPath [_paths=[[-1, 380], []]] FRAGS_ASSIGNED: [0.7128492, 71.28492%] for read: PairPath [_paths=[[717, -2], []]] FRAGS_ASSIGNED: [4.2770953, 71.28492%] for read: PairPath [_paths=[[451, 981, 549], []]] FRAGS_ASSIGNED: [2.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] FRAGS_ASSIGNED: [1.4256984, 71.28492%] for read: PairPath [_paths=[[451, 981], []]] FRAGS_ASSIGNED: [9.979889, 71.28492%] for read: PairPath [_paths=[[549], []]] FRAGS_ASSIGNED: [1.4256984, 71.28492%] for read: PairPath [_paths=[[981, 549], []]] FRAGS_ASSIGNED: [6.0, 100.0%] for read: PairPath [_paths=[[380, 982, 440, 451], []]] sum_pp_log_likelihood: -23.88656024720119 for PP: PairPath [_paths=[[549, 717], []]] sum_pp_log_likelihood: -14.47867955886598 for PP: PairPath [_paths=[[945, 451], []]] sum_pp_log_likelihood: -12.604398963940202 for PP: PairPath [_paths=[[982, 440, 451], []]] sum_pp_log_likelihood: -6.302199481970101 for PP: PairPath [_paths=[[-1, 380], []]] sum_pp_log_likelihood: -5.971640061800297 for PP: PairPath [_paths=[[717, -2], []]] sum_pp_log_likelihood: -35.82984037080178 for PP: PairPath [_paths=[[451, 981, 549], []]] sum_pp_log_likelihood: -12.604398963940202 for PP: PairPath [_paths=[[380, 982, 440, 451, 981, 549], []]] sum_pp_log_likelihood: -11.943280123600594 for PP: PairPath [_paths=[[451, 981], []]] sum_pp_log_likelihood: -83.60296086520415 for PP: PairPath [_paths=[[549], []]] sum_pp_log_likelihood: -7.23933977943299 for PP: PairPath [_paths=[[-1, 945], []]] sum_pp_log_likelihood: -11.943280123600594 for PP: PairPath [_paths=[[981, 549], []]] sum_pp_log_likelihood: -37.81319689182061 for PP: PairPath [_paths=[[380, 982, 440, 451], []]] EM round[7] Prev: -264.22534, curr: -264.2198, delta: 0.005554199 [seconds: 0] #### ACCOUNTING FOR EXPR VALUES expr: 0.28147835 for path: [-1, 945, 451, 981, 549, 717, -2] expr: 0.71852165 for path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] ** Sum expr: 1.0 Expression values for each candidate path: Expr=0.7185216546058655, sum_exp_frags=31.67262840270996, path: [-1, 380, 982, 440, 451, 981, 549, 717, -2] Expr=0.2814783453941345, sum_exp_frags=11.327374458312988, path: [-1, 945, 451, 981, 549, 717, -2] Keeping TOP isoform: [-1, 380, 982, 440, 451, 981, 549, 717, -2] as having _highest_ expr=0.71852165 and 100.0% dom. iso expr for gene. Keeping isoform: [-1, 945, 451, 981, 549, 717, -2] as having expr=0.28147835 and 39.17465% dom. iso expr for gene. EM_REDUCE retaining: [-1, 380, 982, 440, 451, 981, 549, 717, -2] EM_REDUCE retaining: [-1, 945, 451, 981, 549, 717, -2] FinalPath@AfterFiltering: [-1, 380, 982, 440, 451, 981, 549, 717, -2] FinalPath@AfterFiltering: [-1, 945, 451, 981, 549, 717, -2] Final Paths: 2 Final path reported: c1_g1_i1 len=402 path=[380:0-58 982:59-82 440:83-93 451:94-167 981:168-191 549:192-359 717:360-401] [-1, 380, 982, 440, 451, 981, 549, 717, -2] Final path reported: c1_g1_i2 len=367 path=[945:0-58 451:59-132 981:133-156 549:157-324 717:325-366] [-1, 945, 451, 981, 549, 717, -2] total number of paths reported = 2 from 2 components Done make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with javahelper dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' for target in Inchworm Chrysalis trinity-plugins/*Fastool* trinity-plugins/slclust trinity-plugins/scaffold_iworm_contigs trinity-plugins/seqtk-trinity-*; do dh_auto_install \ -O--sourcedirectory=${target}; done cd Inchworm && make -j4 install DESTDIR=/<>/trinityrnaseq-2.6.6\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' Making install in src make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm/src' make[4]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm/src' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/trinityrnaseq-2.6.6+dfsg/debian/tmp/usr/lib/trinityrnaseq/Inchworm/bin' /usr/bin/install -c inchworm cigar_tweaker pull_reads_with_kmers FastaToDeBruijn fastaToKmerCoverageStats '/<>/trinityrnaseq-2.6.6+dfsg/debian/tmp/usr/lib/trinityrnaseq/Inchworm/bin' make[4]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm/src' make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm/src' make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[4]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/Inchworm' dh_auto_install: invalid or non-existing path to the source directory: trinity-plugins/*Fastool* cd trinity-plugins/slclust && make -j4 install DESTDIR=/<>/trinityrnaseq-2.6.6\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' X=`pwd`; \ for i in src; \ do echo '<<<' $i '>>>'; cd $X/$i; make install; done <<< src >>> make[3]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' mv slclust ../bin/ make[3]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust/src' make[2]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg/trinity-plugins/slclust' make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' debian/rules override_dh_install-arch make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' dh_install -a find debian/trinityrnaseq -name '*.p?' | xargs sed -i \ 's=^#!/usr/local/bin/perl=#!/usr/bin/perl=' chmod u+x \ debian/trinityrnaseq/usr/lib/trinityrnaseq/Analysis/DifferentialExpression/pairwise_summaries/class_to_separate_fpkm_matrices.pl \ debian/trinityrnaseq/usr/lib/trinityrnaseq/Analysis/FL_reconstruction_analysis/count_by_expression_quintile.pl \ debian/trinityrnaseq/usr/lib/trinityrnaseq/util/misc/capture_orig_n_unmapped_reads.pl \ debian/trinityrnaseq/usr/lib/trinityrnaseq/util/support_scripts/plugin_install_tests.sh \ debian/trinityrnaseq/usr/lib/trinityrnaseq/util/support_scripts/trinity_install_tests.sh chmod -R a-x debian/trinityrnaseq/usr/lib/trinityrnaseq/PerlLib/*.pm chmod -R a-x debian/trinityrnaseq/usr/lib/trinityrnaseq/PerlLib/*/*.pm make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' dh_install -i chmod u+x \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/runMe.sh \ debian/trinityrnaseq-examples/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Inchworm/runMe_MPI.sh \ make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' jh_installjavadoc dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/<>/trinityrnaseq-2.6.6+dfsg' dh_fixperms find debian -name genwig.sh -exec chmod +x \{\} \; for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>/trinityrnaseq-2.6.6+dfsg' dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing trinityrnaseq-examples (in debian/trinityrnaseq-examples); do_strip: , oemstrip: pkgstriptranslations: processing trinityrnaseq (in debian/trinityrnaseq); do_strip: , oemstrip: pkgstriptranslations: processing trinityrnaseq-dbgsym (in debian/.debhelper/trinityrnaseq/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/trinityrnaseq-examples/DEBIAN/control, package trinityrnaseq-examples, directory debian/trinityrnaseq-examples INFO: pkgstripfiles: waiting for lock (trinityrnaseq-examples) ... pkgstripfiles: processing control file: debian/trinityrnaseq/DEBIAN/control, package trinityrnaseq, directory debian/trinityrnaseq pkgstripfiles: Truncating usr/share/doc/trinityrnaseq/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/trinityrnaseq/dbgsym-root/DEBIAN/control, package trinityrnaseq-dbgsym, directory debian/.debhelper/trinityrnaseq/dbgsym-root dpkg-deb: building package 'trinityrnaseq-dbgsym' in 'debian/.debhelper/scratch-space/build-trinityrnaseq/trinityrnaseq-dbgsym_2.6.6+dfsg-3_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package trinityrnaseq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'trinityrnaseq' in '../trinityrnaseq_2.6.6+dfsg-3_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/trinityrnaseq-examples/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package trinityrnaseq-examples ... oooo Renaming trinityrnaseq-dbgsym_2.6.6+dfsg-3_amd64.deb to trinityrnaseq-dbgsym_2.6.6+dfsg-3_amd64.ddeb ooooo pkgstripfiles: PNG optimization (9/0) for package trinityrnaseq-examples took 41 s dpkg-deb: building package 'trinityrnaseq-examples' in '../trinityrnaseq-examples_2.6.6+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../trinityrnaseq_2.6.6+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190101-2316 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ trinityrnaseq_2.6.6+dfsg-3_amd64.changes: ----------------------------------------- Format: 1.8 Date: Tue, 01 Jan 2019 08:34:35 -0800 Source: trinityrnaseq Binary: trinityrnaseq trinityrnaseq-examples Architecture: amd64 all Version: 2.6.6+dfsg-3 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: trinityrnaseq - RNA-Seq De novo Assembly trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing files Changes: trinityrnaseq (2.6.6+dfsg-3) unstable; urgency=medium . * debian/control: add numpy dependency, required for Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py Checksums-Sha1: fcb153f76b1b2626d47a8b5829f7739a6ab4d63e 25887372 trinityrnaseq-dbgsym_2.6.6+dfsg-3_amd64.ddeb 9b65e886d9c2670c92a80852568cd09a0fd16c18 228295740 trinityrnaseq-examples_2.6.6+dfsg-3_all.deb f5b621def77d03938ac947f73f2522c4fd0c0777 15012 trinityrnaseq_2.6.6+dfsg-3_amd64.buildinfo ad629940b85404c640db60501b1daff62e0e43b7 1830828 trinityrnaseq_2.6.6+dfsg-3_amd64.deb Checksums-Sha256: 22db9a9788983f2f624d46b80865facfb82614db4f9981d9fde090a5e3eeb531 25887372 trinityrnaseq-dbgsym_2.6.6+dfsg-3_amd64.ddeb a571d5ffea2ed3dce8429e45947d60bfa354a35d3e548dbb3b572ec0c7045126 228295740 trinityrnaseq-examples_2.6.6+dfsg-3_all.deb 1fda0f63e46653517dfcfd9afd8eb4975c651d0c366976558ac50be1bfeafa36 15012 trinityrnaseq_2.6.6+dfsg-3_amd64.buildinfo 16074d6fc1d1b0af2f011e6267f78bc6b93b7d19d0348c4f23ef48d9f35068ef 1830828 trinityrnaseq_2.6.6+dfsg-3_amd64.deb Files: 2dbaab876dfc4077ee37901df507de19 25887372 debug optional trinityrnaseq-dbgsym_2.6.6+dfsg-3_amd64.ddeb 979a891c5a420e0f8e4a0f5e265b4e56 228295740 science optional trinityrnaseq-examples_2.6.6+dfsg-3_all.deb b6e39192a9bee0f8c7d774949b62f66f 15012 science optional trinityrnaseq_2.6.6+dfsg-3_amd64.buildinfo 9da929807566af361c9d807f859fd717 1830828 science optional trinityrnaseq_2.6.6+dfsg-3_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ trinityrnaseq-examples_2.6.6+dfsg-3_all.deb ------------------------------------------- new debian package, version 2.0. size 228295740 bytes: control archive=9996 bytes. 1120 bytes, 23 lines control 45948 bytes, 340 lines md5sums Package: trinityrnaseq-examples Source: trinityrnaseq Version: 2.6.6+dfsg-3 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 333170 Depends: perl:any, r-base-core Recommends: trinityrnaseq Section: science Priority: optional Homepage: http://trinityrnaseq.github.io/ Description: RNA-Seq De novo Assembly common example and testing files Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes. . This package contains testing & example files. drwxr-xr-x root/root 0 2019-01-01 16:34 ./ drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/ drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/lib/trinityrnaseq/ lrwxrwxrwx root/root 0 2019-01-01 16:34 ./usr/lib/trinityrnaseq/sample_data -> ../../share/trinityrnaseq/sample_data drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/share/ drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/share/doc/trinityrnaseq-examples/ -rw-r--r-- root/root 1378 2019-01-01 16:34 ./usr/share/doc/trinityrnaseq-examples/changelog.Debian.gz -rw-r--r-- root/root 23613 2018-12-31 23:18 ./usr/share/doc/trinityrnaseq-examples/copyright drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/share/trinityrnaseq/ drwxr-xr-x root/root 0 2018-03-12 17:41 ./usr/share/trinityrnaseq/sample_data/ -rw-r--r-- root/root 237 2018-03-12 17:41 ./usr/share/trinityrnaseq/sample_data/Makefile drwxr-xr-x 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bytes: control archive=15948 bytes. 1440 bytes, 21 lines control 49978 bytes, 499 lines md5sums Package: trinityrnaseq Version: 2.6.6+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8984 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libhts2 (>= 1.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), perl:any, jaligner, libcommons-collections4-java, libgetopt-java, libjung-free-java, bowtie, bowtie2, python, libwww-perl, default-jre-headless, samtools, jellyfish, r-base-core, r-cran-cluster, r-bioc-qvalue, rsem, berkeley-express, trimmomatic, transdecoder, parafly, curl, salmon, python3-numpy | python-numpy Recommends: trinityrnaseq-examples Suggests: collectl Section: science Priority: optional Homepage: http://trinityrnaseq.github.io/ Description: RNA-Seq De novo Assembly Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. 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./usr/share/java/Butterfly-2.6.6.jar lrwxrwxrwx root/root 0 2019-01-01 16:34 ./usr/share/java/Butterfly.jar -> Butterfly-2.6.6.jar drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/share/man/ drwxr-xr-x root/root 0 2019-01-01 16:34 ./usr/share/man/man1/ -rw-r--r-- root/root 1824 2019-01-01 16:34 ./usr/share/man/man1/Trinity.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 1260024 Build-Time: 173 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 70 Job: trinityrnaseq_2.6.6+dfsg-3.dsc Machine Architecture: amd64 Package: trinityrnaseq Package-Time: 250 Source-Version: 2.6.6+dfsg-3 Space: 1260024 Status: successful Version: 2.6.6+dfsg-3 -------------------------------------------------------------------------------- Finished at 20190101-2316 Build needed 00:04:10, 1260024k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16221641 Scanning for processes to kill in build PACKAGEBUILD-16221641