https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-5/+build/16227949 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-001 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Jan 17:16:39 ntpdate[1819]: adjust time server 10.211.37.1 offset -0.000670 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16227949 /home/buildd/filecache-default/12198815be27835f4527655ec2ee7fabeb41ea11 Creating target for build PACKAGEBUILD-16227949 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16227949 Starting target for build PACKAGEBUILD-16227949 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16227949 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16227949 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16227949 Updating target for build PACKAGEBUILD-16227949 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [969 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8769 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5178 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [90.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [46.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [396 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [219 kB] Fetched 16.6 MB in 6s (2656 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-aarch64-linux-gnu binutils-common cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 libpng16-16 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sed tzdata 43 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After this operation, 180 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 dpkg arm64 1.19.2ubuntu2 [1088 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dash arm64 0.5.10.2-4 [84.1 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 sed arm64 4.7-1 [186 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgnutls30 arm64 3.6.5-2ubuntu1 [699 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libubsan1 arm64 8.2.0-13ubuntu1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtsan0 arm64 8.2.0-13ubuntu1 [269 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gcc-8-base arm64 8.2.0-13ubuntu1 [18.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcc1 arm64 1:8.2.0-13ubuntu1 [34.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgomp1 arm64 8.2.0-13ubuntu1 [69.6 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libitm1 arm64 8.2.0-13ubuntu1 [24.4 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libatomic1 arm64 8.2.0-13ubuntu1 [9124 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libasan5 arm64 8.2.0-13ubuntu1 [337 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 liblsan0 arm64 8.2.0-13ubuntu1 [120 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 cpp-8 arm64 8.2.0-13ubuntu1 [5713 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcc1-0 arm64 8.2.0-13ubuntu1 [36.3 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 g++-8 arm64 8.2.0-13ubuntu1 [6550 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gcc-8 arm64 8.2.0-13ubuntu1 [6472 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcc-8-dev arm64 8.2.0-13ubuntu1 [856 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libstdc++-8-dev arm64 8.2.0-13ubuntu1 [1513 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libstdc++6 arm64 8.2.0-13ubuntu1 [371 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libbinutils arm64 2.31.1-11ubuntu1 [461 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils-common arm64 2.31.1-11ubuntu1 [194 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils arm64 2.31.1-11ubuntu1 [3364 B] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-11ubuntu1 [2177 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libzstd1 arm64 1.3.5+dfsg-2 [201 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libapt-pkg5.0 arm64 1.8.0~alpha3 [751 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 apt arm64 1.8.0~alpha3 [1116 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libext2fs2 arm64 1.44.5-1 [153 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 e2fsprogs arm64 1.44.5-1 [491 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 init arm64 1.56+nmu1 [6080 B] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.33-3 [54.8 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libcom-err2 arm64 1.44.5-1 [9216 B] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 libss2 arm64 1.44.5-1 [10.6 kB] Get:35 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.26.0+fossilbc891ac6b-1 [492 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018i-1 [189 kB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpng16-16 arm64 1.6.36-2 [173 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 e2fslibs arm64 1.44.5-1 [2704 B] Get:41 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libassuan0 arm64 2.5.2-1 [32.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 libcomerr2 arm64 1.44.5-1 [2700 B] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.19.0-9.10 [1021 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.9 MB in 1s (29.7 MB/s) (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_arm64.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_arm64.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_arm64.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_arm64.deb ... 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Setting up linux-libc-dev:arm64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:arm64 (8.2.0-13ubuntu1) ... Setting up binutils-common:arm64 (2.31.1-11ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:arm64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:arm64 (1.44.5-1) ... Setting up libasan5:arm64 (8.2.0-13ubuntu1) ... Setting up libassuan0:arm64 (2.5.2-1) ... Setting up libitm1:arm64 (8.2.0-13ubuntu1) ... Setting up libubsan1:arm64 (8.2.0-13ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-11ubuntu1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:arm64 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:arm64 (8.2.0-13ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16227949 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-16227949 --arch=arm64 --dist=disco-proposed --nolog trinityrnaseq_2.6.6+dfsg-5.dsc Initiating build PACKAGEBUILD-16227949 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-001.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-5 (arm64) 03 Jan 2019 17:17 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-5 Source Version: 2.6.6+dfsg-5 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/trinityrnaseq-5Oq_0V/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-5Oq_0V' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16227949/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-8Rnq9E/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-8Rnq9E/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8Rnq9E/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8Rnq9E/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8Rnq9E/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-8Rnq9E/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (88.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-8Rnq9E/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-LeVDfr/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-LeVDfr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LeVDfr/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-LeVDfr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LeVDfr/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-LeVDfr/apt_archive ./ Packages [629 B] Fetched 3052 B in 0s (137 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-trinityrnaseq-dummy : Depends: bowtie2 but it is not installable Depends: salmon but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12646 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 0 Build-Time: 0 Distribution: disco-proposed Fail-Stage: install-deps Host Architecture: arm64 Install-Time: 0 Job: trinityrnaseq_2.6.6+dfsg-5.dsc Machine Architecture: arm64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.6.6+dfsg-5 Space: 0 Status: failed Version: 2.6.6+dfsg-5 -------------------------------------------------------------------------------- Finished at 20190103-1717 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16227949 Scanning for processes to kill in build PACKAGEBUILD-16227949