https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-6/+build/17955422 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-077 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:36:37 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_178 python-lpbuildd_178 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Oct 00:02:32 ntpdate[1917]: adjust time server 10.211.37.1 offset -0.000221 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-17955422 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-17955422 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-17955422 Starting target for build PACKAGEBUILD-17955422 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-17955422 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-17955422 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-17955422 Updating target for build PACKAGEBUILD-17955422 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf Packages [935 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [505 kB] Get:4 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8533 kB] Get:5 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5192 kB] Fetched 15.4 MB in 8s (1950 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files libaudit-common libaudit1 libcryptsetup12 libgcrypt20 libsemanage-common libsemanage1 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 710 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu1 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu2 [4080 B] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu2 [36.0 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 2.9-3build1 [9736 B] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 2.9-3build1 [73.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.1-1ubuntu1 [163 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 710 kB in 0s (1958 kB/s) (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu1_armhf.deb ... Unpacking base-files (11ubuntu1) over (10.2ubuntu7) ... Setting up base-files (11ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /root/.profile to current default. (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.5-2ubuntu2_all.deb ... Unpacking libaudit-common (1:2.8.5-2ubuntu2) over (1:2.8.5-2ubuntu1) ... Setting up libaudit-common (1:2.8.5-2ubuntu2) ... (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-2ubuntu2_armhf.deb ... Unpacking libaudit1:armhf (1:2.8.5-2ubuntu2) over (1:2.8.5-2ubuntu1) ... Setting up libaudit1:armhf (1:2.8.5-2ubuntu2) ... (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-3ubuntu1_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.5-3ubuntu1) over (1.8.4-5ubuntu2) ... Setting up libgcrypt20:armhf (1.8.5-3ubuntu1) ... (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.9-3build1_all.deb ... Unpacking libsemanage-common (2.9-3build1) over (2.9-3) ... Setting up libsemanage-common (2.9-3build1) ... (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.9-3build1_armhf.deb ... Unpacking libsemanage1:armhf (2.9-3build1) over (2.9-3) ... Setting up libsemanage1:armhf (2.9-3build1) ... (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.2.1-1ubuntu1_armhf.deb ... Unpacking libcryptsetup12:armhf (2:2.2.1-1ubuntu1) over (2:2.2.0-3ubuntu1) ... Setting up libcryptsetup12:armhf (2:2.2.1-1ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17955422 armhf focal -c chroot:build-PACKAGEBUILD-17955422 --arch=armhf --dist=focal --nolog trinityrnaseq_2.6.6+dfsg-6.dsc Initiating build PACKAGEBUILD-17955422 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:36:37 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-077.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-6 (armhf) 24 Oct 2019 00:03 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-6 Source Version: 2.6.6+dfsg-6 Distribution: focal Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/trinityrnaseq-N2BmMb/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-N2BmMb' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17955422/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-iajnSi/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-iajnSi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-iajnSi/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-iajnSi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-iajnSi/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-iajnSi/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (24.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-iajnSi/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (57.4 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-WSihXm/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-WSihXm/apt_archive ./ InRelease Get:2 copy:/<>/resolver-WSihXm/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-WSihXm/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-WSihXm/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-WSihXm/apt_archive ./ Packages [632 B] Fetched 3055 B in 0s (42.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-trinityrnaseq-dummy : Depends: jellyfish (>= 2.1.4) but it is not installable Depends: parafly but it is not installable Depends: bowtie2 but it is not installable Depends: salmon but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12487 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 0 Build-Time: 0 Distribution: focal Fail-Stage: install-deps Host Architecture: armhf Install-Time: 0 Job: trinityrnaseq_2.6.6+dfsg-6.dsc Machine Architecture: arm64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.6.6+dfsg-6 Space: 0 Status: failed Version: 2.6.6+dfsg-6 -------------------------------------------------------------------------------- Finished at 20191024-0003 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-17955422 Scanning for processes to kill in build PACKAGEBUILD-17955422