https://launchpad.net/ubuntu/+source/trinityrnaseq/2.6.6+dfsg-6/+build/17955423 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-003 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:35:25 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_178 python-lpbuildd_178 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 23 Oct 23:45:03 ntpdate[1899]: adjust time server 10.211.37.1 offset -0.007027 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=i386 PACKAGEBUILD-17955423 --image-type chroot /home/buildd/filecache-default/1990644b2ed835f25dcaa4fd2a2c1aec8ecd68bc Creating target for build PACKAGEBUILD-17955423 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=i386 PACKAGEBUILD-17955423 Starting target for build PACKAGEBUILD-17955423 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=i386 PACKAGEBUILD-17955423 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-17955423 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=i386 PACKAGEBUILD-17955423 Updating target for build PACKAGEBUILD-17955423 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main i386 Packages [953 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [505 kB] Get:4 http://ftpmaster.internal/ubuntu focal/universe i386 Packages [8680 kB] Get:5 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5192 kB] Fetched 15.6 MB in 4s (4038 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files libaudit-common libaudit1 libcryptsetup12 libgcrypt20 libsemanage-common libsemanage1 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 817 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main i386 base-files i386 11ubuntu1 [60.6 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main i386 libaudit-common all 1:2.8.5-2ubuntu2 [4080 B] Get:3 http://ftpmaster.internal/ubuntu focal/main i386 libaudit1 i386 1:2.8.5-2ubuntu2 [40.5 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main i386 libgcrypt20 i386 1.8.5-3ubuntu1 [402 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main i386 libsemanage-common all 2.9-3build1 [9736 B] Get:6 http://ftpmaster.internal/ubuntu focal/main i386 libsemanage1 i386 2.9-3build1 [94.8 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main i386 libcryptsetup12 i386 2:2.2.1-1ubuntu1 [206 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 817 kB in 0s (15.9 MB/s) (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu1_i386.deb ... Unpacking base-files (11ubuntu1) over (10.2ubuntu7) ... Setting up base-files (11ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /root/.profile to current default. (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.5-2ubuntu2_all.deb ... Unpacking libaudit-common (1:2.8.5-2ubuntu2) over (1:2.8.5-2ubuntu1) ... Setting up libaudit-common (1:2.8.5-2ubuntu2) ... (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-2ubuntu2_i386.deb ... Unpacking libaudit1:i386 (1:2.8.5-2ubuntu2) over (1:2.8.5-2ubuntu1) ... Setting up libaudit1:i386 (1:2.8.5-2ubuntu2) ... (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-3ubuntu1_i386.deb ... Unpacking libgcrypt20:i386 (1.8.5-3ubuntu1) over (1.8.4-5ubuntu2) ... Setting up libgcrypt20:i386 (1.8.5-3ubuntu1) ... (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.9-3build1_all.deb ... Unpacking libsemanage-common (2.9-3build1) over (2.9-3) ... Setting up libsemanage-common (2.9-3build1) ... (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.9-3build1_i386.deb ... Unpacking libsemanage1:i386 (2.9-3build1) over (2.9-3) ... Setting up libsemanage1:i386 (2.9-3build1) ... (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.2.1-1ubuntu1_i386.deb ... Unpacking libcryptsetup12:i386 (2:2.2.1-1ubuntu1) over (2:2.2.0-3ubuntu1) ... Setting up libcryptsetup12:i386 (2:2.2.1-1ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17955423 i386 focal -c chroot:build-PACKAGEBUILD-17955423 --arch=i386 --dist=focal --nolog trinityrnaseq_2.6.6+dfsg-6.dsc Initiating build PACKAGEBUILD-17955423 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:35:25 UTC 2019 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-003.buildd +==============================================================================+ | trinityrnaseq 2.6.6+dfsg-6 (i386) 23 Oct 2019 23:45 | +==============================================================================+ Package: trinityrnaseq Version: 2.6.6+dfsg-6 Source Version: 2.6.6+dfsg-6 Distribution: focal Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/trinityrnaseq-_Cieog/trinityrnaseq-2.6.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-_Cieog' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17955423/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- trinityrnaseq_2.6.6+dfsg-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-4bg5yG/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-4bg5yG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-4bg5yG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-4bg5yG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-4bg5yG/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-4bg5yG/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (252 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-4bg5yG/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12732 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), jellyfish (>= 2.1.4), libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-trinityrnaseq-dummy' in '/<>/resolver-IFzXL7/apt_archive/sbuild-build-depends-trinityrnaseq-dummy.deb'. Ign:1 copy:/<>/resolver-IFzXL7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IFzXL7/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-IFzXL7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IFzXL7/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-IFzXL7/apt_archive ./ Packages [630 B] Fetched 3053 B in 0s (181 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install trinityrnaseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-trinityrnaseq-dummy : Depends: jellyfish (>= 2.1.4) but it is not installable Depends: parafly but it is not installable Depends: bowtie2 but it is not installable Depends: salmon but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 12732 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 0 Build-Time: 0 Distribution: focal Fail-Stage: install-deps Host Architecture: i386 Install-Time: 0 Job: trinityrnaseq_2.6.6+dfsg-6.dsc Machine Architecture: amd64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.6.6+dfsg-6 Space: 0 Status: failed Version: 2.6.6+dfsg-6 -------------------------------------------------------------------------------- Finished at 20191023-2345 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=i386 PACKAGEBUILD-17955423 Scanning for processes to kill in build PACKAGEBUILD-17955423