https://launchpad.net/ubuntu/+source/unanimity/3.3.0+dfsg-1ubuntu3/+build/16380265 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-035 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:45 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_167 python-lpbuildd_167 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 11 Feb 19:41:34 ntpdate[1812]: adjust time server 10.211.37.1 offset -0.000319 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16380265 --image-type chroot /home/buildd/filecache-default/020b0022f770b890c357907d03d82568c584d50e Creating target for build PACKAGEBUILD-16380265 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16380265 Starting target for build PACKAGEBUILD-16380265 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16380265 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16380265 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16380265 Updating target for build PACKAGEBUILD-16380265 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [997 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [9167 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5254 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [54.5 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [25.2 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [202 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [107 kB] Fetched 16.8 MB in 4s (4014 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: gcc-9-base libreadline8 The following packages will be upgraded: adduser apt base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils ca-certificates coreutils cpp-8 dash debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libip4tc0 libitm1 libjson-c3 liblsan0 liblz4-1 liblzma5 libmount1 libmpfr6 libmpx2 libnettle6 libperl5.28 libpng16-16 libprocps7 libquadmath0 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login lsb-base mount passwd perl perl-base perl-modules-5.28 pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux xz-utils zlib1g 103 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 66.6 MB of archives. After this operation, 7063 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 debianutils amd64 4.8.6.1 [85.5 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 bash amd64 5.0-2ubuntu1 [644 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 bsdutils amd64 1:2.33.1-0.1ubuntu1 [63.6 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 coreutils amd64 8.30-1ubuntu1 [1243 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 tar amd64 1.30+dfsg-5 [243 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libperl5.28 amd64 5.28.1-4 [3834 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 perl amd64 5.28.1-4 [204 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 perl-base amd64 5.28.1-4 [1512 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 perl-modules-5.28 all 5.28.1-4 [2811 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.3 [672 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm6 amd64 1.18.1-2build1 [27.6 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm-compat4 amd64 1.18.1-2build1 [6168 B] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 zlib1g amd64 1:1.2.11.dfsg-1ubuntu2 [54.0 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 debconf all 1.5.70 [122 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 dash amd64 0.5.10.2-4ubuntu1 [85.8 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 findutils amd64 4.6.0+git+20190105-2 [329 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 grep amd64 3.3-1 [149 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 gzip amd64 1.9-3 [93.8 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main amd64 libsmartcols1 amd64 2.33.1-0.1ubuntu1 [92.2 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 libuuid1 amd64 2.33.1-0.1ubuntu1 [20.9 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libblkid1 amd64 2.33.1-0.1ubuntu1 [133 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 libfdisk1 amd64 2.33.1-0.1ubuntu1 [173 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 libmount1 amd64 2.33.1-0.1ubuntu1 [146 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 fdisk amd64 2.33.1-0.1ubuntu1 [118 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 login amd64 1:4.5-1.1ubuntu1 [264 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 util-linux amd64 2.33.1-0.1ubuntu1 [1002 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.7-1 [190 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libdebconfclient0 amd64 0.247ubuntu1 [6424 B] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 base-passwd amd64 3.5.46 [47.4 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libnettle6 amd64 3.4.1-1 [110 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libhogweed4 amd64 3.4.1-1 [140 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libgnutls30 amd64 3.6.5-2ubuntu1 [759 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-9-base amd64 9-20190207-0ubuntu1 [17.2 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc1 amd64 1:9-20190207-0ubuntu1 [40.2 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 liblz4-1 amd64 1.8.3-1ubuntu1 [71.7 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 liblzma5 amd64 5.2.4-1 [92.4 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++6 amd64 9-20190207-0ubuntu1 [508 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libudev1 amd64 240-5ubuntu3 [69.9 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libzstd1 amd64 1.3.8+dfsg-3 [226 kB] Get:42 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libapt-pkg5.0 amd64 1.8.0~rc3 [823 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-2 [7016 B] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-2 [85.2 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 passwd amd64 1:4.5-1.1ubuntu1 [816 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 adduser all 3.118ubuntu1 [163 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 libgpg-error0 amd64 1.35-1 [57.7 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 gpgv amd64 2.2.12-1ubuntu3 [197 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 apt amd64 1.8.0~rc3 [1214 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 systemd-sysv amd64 240-5ubuntu3 [9384 B] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libcap2 amd64 1:2.25-2 [13.3 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.2 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 libjson-c3 amd64 0.12.1+ds-2 [22.2 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libcryptsetup12 amd64 2:2.0.6-1ubuntu1 [140 kB] Get:55 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libip4tc0 amd64 1.8.2-3ubuntu1 [20.8 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 mount amd64 2.33.1-0.1ubuntu1 [113 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 systemd amd64 240-5ubuntu3 [3329 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 libsystemd0 amd64 240-5ubuntu3 [249 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.5-1 [159 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.5-1 [514 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 init amd64 1.56+nmu1 [6080 B] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 libcap-ng0 amd64 0.7.9-2 [11.0 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libgomp1 amd64 9-20190207-0ubuntu1 [89.0 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libitm1 amd64 9-20190207-0ubuntu1 [27.9 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libatomic1 amd64 9-20190207-0ubuntu1 [9220 B] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libasan5 amd64 9-20190207-0ubuntu1 [394 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 liblsan0 amd64 9-20190207-0ubuntu1 [139 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 libtsan0 amd64 9-20190207-0ubuntu1 [300 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libubsan1 amd64 9-20190207-0ubuntu1 [130 kB] Get:70 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libmpx2 amd64 8.2.0-20ubuntu1 [11.7 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 libquadmath0 amd64 9-20190207-0ubuntu1 [145 kB] Get:72 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 g++-8 amd64 8.2.0-20ubuntu1 [10.1 MB] Get:73 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8 amd64 8.2.0-20ubuntu1 [9798 kB] Get:74 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libstdc++-8-dev amd64 8.2.0-20ubuntu1 [1545 kB] Get:75 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgcc-8-dev amd64 8.2.0-20ubuntu1 [2305 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 libmpfr6 amd64 4.0.2-1 [240 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 libcc1-0 amd64 9-20190207-0ubuntu1 [48.1 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-x86-64-linux-gnu amd64 2.32-1ubuntu4 [1847 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 libbinutils amd64 2.32-1ubuntu4 [470 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 binutils amd64 2.32-1ubuntu4 [3388 B] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-common amd64 2.32-1ubuntu4 [200 kB] Get:82 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 cpp-8 amd64 8.2.0-20ubuntu1 [8935 kB] Get:83 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 gcc-8-base amd64 8.2.0-20ubuntu1 [18.8 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.5-1 [9372 B] Get:85 http://ftpmaster.internal/ubuntu disco/main amd64 libprocps7 amd64 2:3.3.15-2ubuntu2 [32.8 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.5-1 [11.1 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main amd64 lsb-base all 10.2018112800ubuntu1 [12.6 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main amd64 procps amd64 2:3.3.15-2ubuntu2 [231 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main amd64 ca-certificates all 20190110 [146 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main amd64 readline-common all 8.0-1 [53.4 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main amd64 libreadline8 amd64 8.0-1 [130 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-2 [531 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018i-1 [189 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main amd64 xz-utils amd64 5.2.4-1 [82.5 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main amd64 libpng16-16 amd64 1.6.36-5 [179 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.5-1 [2704 B] Get:99 http://ftpmaster.internal/ubuntu disco/main amd64 libassuan0 amd64 2.5.2-1 [35.1 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main amd64 gpg amd64 2.2.12-1ubuntu3 [475 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main amd64 gpgconf amd64 2.2.12-1ubuntu3 [123 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main amd64 gpg-agent amd64 2.2.12-1ubuntu3 [229 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.5-1 [2700 B] Get:104 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-13.14 [1074 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 pkgbinarymangler all 144 [55.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.6 MB in 3s (25.3 MB/s) (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.1_amd64.deb ... Unpacking debianutils (4.8.6.1) over (4.8.6) ... Setting up debianutils (4.8.6.1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../bash_5.0-2ubuntu1_amd64.deb ... Unpacking bash (5.0-2ubuntu1) over (4.4.18-2ubuntu3) ... Setting up bash (5.0-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.33.1-0.1ubuntu1) over (1:2.32-0.1ubuntu2) ... Setting up bsdutils (1:2.33.1-0.1ubuntu1) ... (Reading database ... 12665 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-1ubuntu1_amd64.deb ... Unpacking coreutils (8.30-1ubuntu1) over (8.28-1ubuntu2) ... Setting up coreutils (8.30-1ubuntu1) ... 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Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16380265 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-16380265 --arch=amd64 --dist=disco-proposed --nolog -A unanimity_3.3.0+dfsg-1ubuntu3.dsc Initiating build PACKAGEBUILD-16380265 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:45 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-035.buildd +==============================================================================+ | unanimity 3.3.0+dfsg-1ubuntu3 (amd64) 11 Feb 2019 19:42 | +==============================================================================+ Package: unanimity Version: 3.3.0+dfsg-1ubuntu3 Source Version: 3.3.0+dfsg-1ubuntu3 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/unanimity-7JkKOH/unanimity-3.3.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/unanimity-7JkKOH' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16380265/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- unanimity_3.3.0+dfsg-1ubuntu3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ckdacl/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ckdacl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ckdacl/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ckdacl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ckdacl/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ckdacl/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (200 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ckdacl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12715 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev, libpbcopper-dev, libseqan2-dev, pandoc Filtered Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev, libpbcopper-dev, libseqan2-dev, pandoc dpkg-deb: building package 'sbuild-build-depends-unanimity-dummy' in '/<>/resolver-dM57LT/apt_archive/sbuild-build-depends-unanimity-dummy.deb'. Ign:1 copy:/<>/resolver-dM57LT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dM57LT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-dM57LT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dM57LT/apt_archive ./ Sources [282 B] Get:5 copy:/<>/resolver-dM57LT/apt_archive ./ Packages [609 B] Fetched 3010 B in 0s (207 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install unanimity build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas3 libboost-dev libboost1.67-dev libbsd0 libcroco3 libcurl3-gnutls libcurl4 libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts2 libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblua5.1-0 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpbbam-dev libpbbam0.19.0 libpbcopper-dev libpipeline1 libpsl5 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh-4 libssl-dev libtool libuchardet0 libuv1 libwind0-heimdal libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal swig swig3.0 zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user liblzma-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php ruby r-base-core libjs-mathjax node-katex libmail-box-perl python-doc python-tk gfortran python-pytest python-numpy-dbg python-numpy-doc python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc swig-doc swig-examples swig3.0-examples swig3.0-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas3 libboost-dev libboost1.67-dev libbsd0 libcroco3 libcurl3-gnutls libcurl4 libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts2 libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblua5.1-0 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpbbam-dev libpbbam0.19.0 libpbcopper-dev libpipeline1 libpsl5 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh-4 libssl-dev libtool libuchardet0 libuv1 libwind0-heimdal libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal sbuild-build-depends-unanimity-dummy swig swig3.0 zlib1g-dev 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 514 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu disco/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 m4 amd64 1.4.18-2 [199 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 autoconf all 2.69-11 [322 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 autopoint all 0.19.8.1-9 [412 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 cmake-data all 3.13.4-1 [1458 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive13 amd64 3.3.3-4 [305 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [14.9 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [49.4 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.47+dfsg-2ubuntu1 [16.2 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-2ubuntu1 [154 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libnghttp2-14 amd64 1.36.0-2 [79.0 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [54.5 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libssh-4 amd64 0.8.6-2 [185 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl4 amd64 7.63.0-1ubuntu1 [232 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 librhash0 amd64 1.3.8-1 [113 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 libuv1 amd64 1.24.1-1 [69.5 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 cmake amd64 3.13.4-1 [3471 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 libtool all 2.4.6-9 [194 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 dh-autoreconf all 19 [16.1 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-stripnondeterminism-perl all 1.1.0-1 [13.6 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 dh-strip-nondeterminism all 1.1.0-1 [5100 B] Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-3 [78.1 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-3 [81.4 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 debhelper all 12ubuntu1 [887 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 python3-lib2to3 all 3.7.2-3ubuntu1 [75.5 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 python3-distutils all 3.7.2-3ubuntu1 [140 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main amd64 dh-python all 3.20180927ubuntu2 [90.9 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main amd64 libblas3 amd64 3.8.0-2 [138 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main amd64 libboost1.67-dev amd64 1.67.0-13 [8362 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main amd64 libboost-dev amd64 1.67.0.1 [3228 B] Get:89 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl3-gnutls amd64 7.63.0-1ubuntu1 [230 kB] Get:90 http://ftpmaster.internal/ubuntu disco/universe amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main amd64 libexpat1-dev amd64 2.2.6-1 [134 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main amd64 libgfortran5 amd64 9-20190207-0ubuntu1 [640 kB] Get:93 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 libhts2 amd64 1.9-10 [292 kB] Get:94 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kB] Get:104 http://ftpmaster.internal/ubuntu disco/main amd64 libpython2.7-dev amd64 2.7.15-8 [31.6 MB] Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 libpython2-dev amd64 2.7.15-4 [7648 B] Get:106 http://ftpmaster.internal/ubuntu disco/main amd64 libpython-dev amd64 2.7.15-4 [5884 B] Get:107 http://ftpmaster.internal/ubuntu disco/main amd64 libpython-all-dev amd64 2.7.15-4 [1104 B] Get:108 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 libseqan2-dev all 2.4.0+dfsg-8ubuntu2 [1207 kB] Get:109 http://ftpmaster.internal/ubuntu disco/universe amd64 pandoc-data all 2.2.1-3build1 [75.3 kB] Get:110 http://ftpmaster.internal/ubuntu disco/universe amd64 pandoc amd64 2.2.1-3build1 [14.5 MB] Get:111 http://ftpmaster.internal/ubuntu disco/main amd64 python-all amd64 2.7.15-4 [1088 B] Get:112 http://ftpmaster.internal/ubuntu disco/main amd64 python2.7-dev amd64 2.7.15-8 [279 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main amd64 python2-dev amd64 2.7.15-4 [1256 B] Get:114 http://ftpmaster.internal/ubuntu disco/main amd64 python-dev amd64 2.7.15-4 [1228 B] Get:115 http://ftpmaster.internal/ubuntu disco/main amd64 python-all-dev amd64 2.7.15-4 [1112 B] Get:116 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python-pkg-resources all 40.8.0-1 [129 kB] Get:117 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python-numpy amd64 1:1.16.0-1ubuntu1 [2076 kB] Get:118 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python-setuptools all 40.8.0-1 [329 kB] Get:119 http://ftpmaster.internal/ubuntu disco/universe amd64 swig3.0 amd64 3.0.12-2 [1098 kB] Get:120 http://ftpmaster.internal/ubuntu disco/universe amd64 swig amd64 3.0.12-2 [6460 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 3s (31.0 MB/s) Selecting previously unselected package libpython3.7-minimal:amd64. 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Setting up gettext-base (0.19.8.1-9) ... Setting up cmake-data (3.13.4-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libkrb5support0:amd64 (1.17-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:amd64 (1:5.35-2) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:amd64 (1.67.0-13) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libexpat1-dev:amd64 (2.2.6-1) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1build3) ... Setting up libboost-dev:amd64 (1.67.0.1) ... Setting up liblzma-dev:amd64 (5.2.4-1) ... Setting up libkeyutils1:amd64 (1.5.9-10) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgfortran5:amd64 (9-20190207-0ubuntu1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-8) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libk5crypto3:amd64 (1.17-1) ... Setting up swig (3.0.12-2) ... 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Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:amd64 (2.7.15-4) ... Setting up libkrb5-3:amd64 (1.17-1) ... Setting up libpython2.7-dev:amd64 (2.7.15-8) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up python2.7-dev (2.7.15-8) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libtool (2.4.6-9) ... Setting up libpython3-stdlib:amd64 (3.7.2-1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.2-1) ... Setting up python2 (2.7.15-4) ... Setting up libgssapi-krb5-2:amd64 (1.17-1) ... Setting up libpython2-dev:amd64 (2.7.15-4) ... Setting up libpython-stdlib:amd64 (2.7.15-4) ... 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Setting up libpbbam-dev (0.19.0+dfsg-4) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-unanimity-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-142-generic amd64 (x86_64) Toolchain package versions: binutils_2.32-1ubuntu4 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-20ubuntu1 gcc-8_8.2.0-20ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-20ubuntu1 libstdc++6_9-20190207-0ubuntu1 linux-libc-dev_4.19.0-13.14 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-1 apt_1.8.0~rc3 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.46 bash_5.0-2ubuntu1 binutils_2.32-1ubuntu4 binutils-common_2.32-1ubuntu4 binutils-x86-64-linux-gnu_2.32-1ubuntu4 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20190110 cmake_3.13.4-1 cmake-data_3.13.4-1 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libldap-common_2.4.47+dfsg-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_9-20190207-0ubuntu1 liblua5.1-0_5.1.5-8.1build3 liblz4-1_1.8.3-1ubuntu1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libmpx2_8.2.0-20ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-2 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpbbam-dev_0.19.0+dfsg-4 libpbbam0.19.0_0.19.0+dfsg-4 libpbcopper-dev_0.4.1+dfsg-2 libpcre3_2:8.39-11 libperl5.28_5.28.1-4 libpipeline1_1.5.1-2 libpng16-16_1.6.36-5 libprocps7_2:3.3.15-2ubuntu2 libpsl5_0.20.2-2 libpython-all-dev_2.7.15-4 libpython-dev_2.7.15-4 libpython-stdlib_2.7.15-4 libpython2-dev_2.7.15-4 libpython2-stdlib_2.7.15-4 libpython2.7_2.7.15-8 libpython2.7-dev_2.7.15-8 libpython2.7-minimal_2.7.15-8 libpython2.7-stdlib_2.7.15-8 libpython3-stdlib_3.7.2-1 libpython3.7-minimal_3.7.2-2 libpython3.7-stdlib_3.7.2-2 libquadmath0_9-20190207-0ubuntu1 libreadline7_7.0-5 libreadline8_8.0-1 librhash0_1.3.8-1 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libseqan2-dev_2.4.0+dfsg-8ubuntu2 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.33.1-0.1ubuntu1 libsqlite3-0_3.26.0+fossilbc891ac6b-2 libss2_1.44.5-1 libssh-4_0.8.6-2 libssl-dev_1.1.1a-1ubuntu2 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-20ubuntu1 libstdc++6_9-20190207-0ubuntu1 libsystemd0_240-5ubuntu3 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-9 libtsan0_9-20190207-0ubuntu1 libubsan1_9-20190207-0ubuntu1 libuchardet0_0.0.6-3 libudev1_240-5ubuntu3 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.33.1-0.1ubuntu1 libuv1_1.24.1-1 libwind0-heimdal_7.5.0+dfsg-2.1 libxml2_2.9.4+dfsg1-7ubuntu3 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-13.14 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu1 lsb-base_10.2018112800ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.33.1-0.1ubuntu1 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 pandoc_2.2.1-3build1 pandoc-data_2.2.1-3build1 passwd_1:4.5-1.1ubuntu1 patch_2.7.6-3 perl_5.28.1-4 perl-base_5.28.1-4 perl-modules-5.28_5.28.1-4 pinentry-curses_1.1.0-1build2 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu2 python_2.7.15-4 python-all_2.7.15-4 python-all-dev_2.7.15-4 python-dev_2.7.15-4 python-minimal_2.7.15-4 python-numpy_1:1.16.0-1ubuntu1 python-pkg-resources_40.8.0-1 python-setuptools_40.8.0-1 python2_2.7.15-4 python2-dev_2.7.15-4 python2-minimal_2.7.15-4 python2.7_2.7.15-8 python2.7-dev_2.7.15-8 python2.7-minimal_2.7.15-8 python3_3.7.2-1 python3-distutils_3.7.2-3ubuntu1 python3-lib2to3_3.7.2-3ubuntu1 python3-minimal_3.7.2-1 python3.7_3.7.2-2 python3.7-minimal_3.7.2-2 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-unanimity-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 swig_3.0.12-2 swig3.0_3.0.12-2 systemd_240-5ubuntu3 systemd-sysv_240-5ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-5 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.33.1-0.1ubuntu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Feb 11 19:40:20 2019 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./unanimity_3.3.0+dfsg-1ubuntu3.dsc dpkg-source: info: extracting unanimity in unanimity-3.3.0+dfsg dpkg-source: info: unpacking unanimity_3.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking unanimity_3.3.0+dfsg-1ubuntu3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_missing_library_files dpkg-source: info: applying git-version.patch dpkg-source: info: applying no-static-linking.patch dpkg-source: info: applying do_not_refer_to_non-existing_images.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16380265 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16380265 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16380265 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package unanimity dpkg-buildpackage: info: source version 3.3.0+dfsg-1ubuntu3 dpkg-buildpackage: info: source distribution disco dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean \ --package=unanimity \ --no-package=python-consensuscore2 \ --buildsystem=cmake \ --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg' dh_auto_clean rm -f config-main rm -f doc/JULIET.html doc/PBCCS.html make[1]: Leaving directory '/<>/unanimity-3.3.0+dfsg' dh_autoreconf_clean -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_clean -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh clean \ --package=python-consensuscore2 \ --no-package=unanimity \ --with python2 \ --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean running clean removing '/<>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it rm -f config-main rm -f doc/JULIET.html doc/PBCCS.html make[1]: Leaving directory '/<>/unanimity-3.3.0+dfsg' dh_autoreconf_clean -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_clean -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild debian/rules build dh build \ --package=unanimity \ --no-package=python-consensuscore2 \ --buildsystem=cmake \ --builddirectory=build dh_update_autotools_config -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg' dh_auto_configure -- \ -DCMAKE_EXE_LINKER_FLAGS=-pthread \ -DUNY_build_tests=OFF \ -DPYTHON_SWIG=ON \ -DZLIB_INCLUDE_DIRS=/usr/include \ -DBoost_INCLUDE_DIRS=/usr/include \ -DPacBioBAM_INCLUDE_DIRS=/usr/include \ -DPacBioBAM_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbbam.so \ -DSEQAN_INCLUDE_DIRS=/usr/include \ -Dpbcopper_INCLUDE_DIRS=/usr/include \ -Dpbcopper_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbcopper.a cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_EXE_LINKER_FLAGS=-pthread -DUNY_build_tests=OFF -DPYTHON_SWIG=ON -DZLIB_INCLUDE_DIRS=/usr/include -DBoost_INCLUDE_DIRS=/usr/include -DPacBioBAM_INCLUDE_DIRS=/usr/include -DPacBioBAM_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbbam.so -DSEQAN_INCLUDE_DIRS=/usr/include -Dpbcopper_INCLUDE_DIRS=/usr/include -Dpbcopper_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbcopper.a .. -- The CXX compiler identification is GNU 8.2.0 -- The C compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS -- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS - Success -- Found PythonInterp: /usr/bin/python (found version "2.7.15") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR ZLIB_INCLUDE_DIRS -- Build files have been written to: /<>/unanimity-3.3.0+dfsg/build touch config-main make[1]: Leaving directory '/<>/unanimity-3.3.0+dfsg' dh_auto_build -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build cd build && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' /usr/bin/cmake -S/<>/unanimity-3.3.0+dfsg -B/<>/unanimity-3.3.0+dfsg/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/unanimity-3.3.0+dfsg/build/CMakeFiles /<>/unanimity-3.3.0+dfsg/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/depend make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/depend make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' cd /<>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/unanimity-3.3.0+dfsg /<>/unanimity-3.3.0+dfsg/src /<>/unanimity-3.3.0+dfsg/build /<>/unanimity-3.3.0+dfsg/build/src /<>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/cc2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' cd /<>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/unanimity-3.3.0+dfsg /<>/unanimity-3.3.0+dfsg/src /<>/unanimity-3.3.0+dfsg/build /<>/unanimity-3.3.0+dfsg/build/src /<>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/unanimity.dir/DependInfo.cmake --color= Scanning dependencies of target unanimity make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/build make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' Scanning dependencies of target cc2 make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/build make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' [ 1%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Consensus.cpp [ 2%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp [ 3%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Filters.cpp [ 4%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o -c /<>/unanimity-3.3.0+dfsg/build/generated/UnanimityGitHash.cpp [ 6%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o -c /<>/unanimity-3.3.0+dfsg/build/generated/UnanimityVersion.cpp [ 7%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o -c /<>/unanimity-3.3.0+dfsg/build/generated/ModelInternalInitializer.cpp [ 8%] Building CXX object src/CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/align/AffineAlignment.cpp [ 9%] Building CXX object src/CMakeFiles/cc2.dir/align/AlignConfig.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/AlignConfig.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/align/AlignConfig.cpp [ 11%] Building CXX object src/CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp [ 12%] Building CXX object src/CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/align/LinearAlignment.cpp [ 13%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/GenomicConsensus.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/GenomicConsensus.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/GenomicConsensus.cpp [ 14%] Building CXX object src/CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/align/PairwiseAlignment.cpp [ 16%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/IPoaModel.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/IPoaModel.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/IPoaModel.cpp [ 17%] Building CXX object src/CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/matrix/BasicDenseMatrix.cpp [ 18%] Building CXX object src/CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/matrix/ScaledMatrix.cpp [ 19%] Building CXX object src/CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/matrix/SparseMatrix.cpp [ 20%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Input.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Input.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Input.cpp [ 22%] Building CXX object src/CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp [ 23%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Intervals.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Intervals.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Intervals.cpp [ 24%] Building CXX object src/CMakeFiles/cc2.dir/models/P6C4NoCov_Model.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/P6C4NoCov_Model.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp [ 25%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Output.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Output.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Output.cpp [ 27%] Building CXX object src/CMakeFiles/cc2.dir/models/PwSnrAModelForm.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/PwSnrAModelForm.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp [ 28%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Settings.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Settings.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Settings.cpp [ 29%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Sorting.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Sorting.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Sorting.cpp [ 30%] Building CXX object src/CMakeFiles/cc2.dir/models/PwSnrModelForm.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/PwSnrModelForm.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp [ 32%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Workflow.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Workflow.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Workflow.cpp [ 33%] Building CXX object src/CMakeFiles/cc2.dir/models/S_P1C1Beta_Model.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/S_P1C1Beta_Model.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/S_P1C1Beta_Model.cpp [ 34%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/arrow/ArrowModel.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/arrow/ArrowModel.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/arrow/ArrowModel.cpp [ 35%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastaWriter.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastaWriter.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/FastaWriter.cpp [ 37%] Building CXX object src/CMakeFiles/cc2.dir/models/S_P1C1v1_Model.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/S_P1C1v1_Model.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/S_P1C1v1_Model.cpp [ 38%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastqWriter.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastqWriter.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/FastqWriter.cpp [ 39%] Building CXX object src/CMakeFiles/cc2.dir/models/S_P1C1v2_Model.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/S_P1C1v2_Model.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/S_P1C1v2_Model.cpp [ 40%] Building CXX object src/CMakeFiles/cc2.dir/models/S_P2C2v5_Model.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/S_P2C2v5_Model.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/S_P2C2v5_Model.cpp [ 41%] Building CXX object src/CMakeFiles/cc2.dir/models/SnrModelForm.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/SnrModelForm.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/models/SnrModelForm.cpp [ 43%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/GffWriter.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/GffWriter.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/GffWriter.cpp [ 44%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaAlignmentMatrix.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/poa/PoaAlignmentMatrix.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/poa/PoaAlignmentMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaConsensus.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/poa/PoaConsensus.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/poa/PoaConsensus.cpp [ 46%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaGraph.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/poa/PoaGraph.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/poa/PoaGraph.cpp [ 48%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/VcfWriter.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/VcfWriter.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/VcfWriter.cpp [ 49%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaGraphImpl.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/poa/PoaGraphImpl.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/poa/PoaGraphImpl.cpp [ 50%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaGraphTraversals.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/poa/PoaGraphTraversals.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/poa/PoaGraphTraversals.cpp [ 51%] Building CXX object src/CMakeFiles/cc2.dir/poa/RangeFinder.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/poa/RangeFinder.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/poa/RangeFinder.cpp [ 53%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/plurality/PluralityModel.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/plurality/PluralityModel.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/plurality/PluralityModel.cpp [ 54%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/poa/PoaModel.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/poa/PoaModel.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/poa/PoaModel.cpp [ 55%] Building CXX object src/CMakeFiles/cc2.dir/Coverage.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Coverage.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Coverage.cpp [ 56%] Building CXX object src/CMakeFiles/cc2.dir/EasyReadScorer.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/EasyReadScorer.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/EasyReadScorer.cpp [ 58%] Building CXX object src/CMakeFiles/unanimity.dir/ChemistryMapping.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/ChemistryMapping.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ChemistryMapping.cpp [ 59%] Building CXX object src/CMakeFiles/cc2.dir/Evaluator.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Evaluator.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Evaluator.cpp [ 60%] Building CXX object src/CMakeFiles/unanimity.dir/ChemistryTriple.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/ChemistryTriple.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ChemistryTriple.cpp [ 61%] Building CXX object src/CMakeFiles/unanimity.dir/Interval.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/Interval.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Interval.cpp [ 62%] Building CXX object src/CMakeFiles/cc2.dir/EvaluatorImpl.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/EvaluatorImpl.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/EvaluatorImpl.cpp [ 64%] Building CXX object src/CMakeFiles/unanimity.dir/ReadId.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/ReadId.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ReadId.cpp [ 65%] Building CXX object src/CMakeFiles/cc2.dir/Integrator.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Integrator.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Integrator.cpp [ 66%] Building CXX object src/CMakeFiles/unanimity.dir/SparsePoa.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/SparsePoa.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp [ 67%] Building CXX object src/CMakeFiles/cc2.dir/IntervalMask.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/IntervalMask.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/IntervalMask.cpp [ 69%] Building CXX object src/CMakeFiles/cc2.dir/ModelConfig.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/ModelConfig.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ModelConfig.cpp [ 70%] Building CXX object src/CMakeFiles/unanimity.dir/SubreadResultCounter.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/SubreadResultCounter.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/SubreadResultCounter.cpp [ 71%] Building CXX object src/CMakeFiles/unanimity.dir/Timer.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/Timer.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Timer.cpp [ 72%] Building CXX object src/CMakeFiles/cc2.dir/ModelFactory.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/ModelFactory.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ModelFactory.cpp [ 74%] Building CXX object src/CMakeFiles/cc2.dir/ModelFormFactory.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/ModelFormFactory.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ModelFormFactory.cpp [ 75%] Building CXX object src/CMakeFiles/unanimity.dir/Utility.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/Utility.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Utility.cpp [ 76%] Building CXX object src/CMakeFiles/cc2.dir/ModelSelection.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/ModelSelection.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ModelSelection.cpp [ 77%] Building CXX object src/CMakeFiles/unanimity.dir/ConsensusSettings.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/ConsensusSettings.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/ConsensusSettings.cpp [ 79%] Building CXX object src/CMakeFiles/cc2.dir/Mutation.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Mutation.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Mutation.cpp [ 80%] Building CXX object src/CMakeFiles/cc2.dir/Polish.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Polish.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Polish.cpp [ 81%] Building CXX object src/CMakeFiles/cc2.dir/PolishResult.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/PolishResult.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/PolishResult.cpp [ 82%] Building CXX object src/CMakeFiles/cc2.dir/Read.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Read.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Read.cpp [ 83%] Building CXX object src/CMakeFiles/cc2.dir/Recursor.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Recursor.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Recursor.cpp [ 85%] Building CXX object src/CMakeFiles/cc2.dir/Sequence.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Sequence.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Sequence.cpp [ 86%] Building CXX object src/CMakeFiles/cc2.dir/Template.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/Template.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/Template.cpp [ 87%] Linking CXX static library libunanimity.a cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -P CMakeFiles/unanimity.dir/cmake_clean_target.cmake cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/unanimity.dir/link.txt --verbose=1 /usr/bin/ar qc libunanimity.a CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/GenomicConsensus.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/IPoaModel.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Input.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Intervals.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Output.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Settings.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Sorting.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Workflow.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/arrow/ArrowModel.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastaWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastqWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/GffWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/VcfWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/plurality/PluralityModel.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/poa/PoaModel.cpp.o CMakeFiles/unanimity.dir/ChemistryMapping.cpp.o CMakeFiles/unanimity.dir/ChemistryTriple.cpp.o CMakeFiles/unanimity.dir/Interval.cpp.o CMakeFiles/unanimity.dir/ReadId.cpp.o CMakeFiles/unanimity.dir/SparsePoa.cpp.o CMakeFiles/unanimity.dir/SubreadResultCounter.cpp.o CMakeFiles/unanimity.dir/Timer.cpp.o CMakeFiles/unanimity.dir/Utility.cpp.o CMakeFiles/unanimity.dir/ConsensusSettings.cpp.o /usr/bin/ranlib libunanimity.a make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' [ 87%] Built target unanimity [ 88%] Linking CXX static library libcc2.a cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -P CMakeFiles/cc2.dir/cmake_clean_target.cmake cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cc2.dir/link.txt --verbose=1 /usr/bin/ar qc libcc2.a CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o CMakeFiles/cc2.dir/align/AlignConfig.cpp.o CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o CMakeFiles/cc2.dir/models/P6C4NoCov_Model.cpp.o CMakeFiles/cc2.dir/models/PwSnrAModelForm.cpp.o CMakeFiles/cc2.dir/models/PwSnrModelForm.cpp.o CMakeFiles/cc2.dir/models/S_P1C1Beta_Model.cpp.o CMakeFiles/cc2.dir/models/S_P1C1v1_Model.cpp.o CMakeFiles/cc2.dir/models/S_P1C1v2_Model.cpp.o CMakeFiles/cc2.dir/models/S_P2C2v5_Model.cpp.o CMakeFiles/cc2.dir/models/SnrModelForm.cpp.o CMakeFiles/cc2.dir/poa/PoaAlignmentMatrix.cpp.o CMakeFiles/cc2.dir/poa/PoaConsensus.cpp.o CMakeFiles/cc2.dir/poa/PoaGraph.cpp.o CMakeFiles/cc2.dir/poa/PoaGraphImpl.cpp.o CMakeFiles/cc2.dir/poa/PoaGraphTraversals.cpp.o CMakeFiles/cc2.dir/poa/RangeFinder.cpp.o CMakeFiles/cc2.dir/Coverage.cpp.o CMakeFiles/cc2.dir/EasyReadScorer.cpp.o CMakeFiles/cc2.dir/Evaluator.cpp.o CMakeFiles/cc2.dir/EvaluatorImpl.cpp.o CMakeFiles/cc2.dir/Integrator.cpp.o CMakeFiles/cc2.dir/IntervalMask.cpp.o CMakeFiles/cc2.dir/ModelConfig.cpp.o CMakeFiles/cc2.dir/ModelFactory.cpp.o CMakeFiles/cc2.dir/ModelFormFactory.cpp.o CMakeFiles/cc2.dir/ModelSelection.cpp.o CMakeFiles/cc2.dir/Mutation.cpp.o CMakeFiles/cc2.dir/Polish.cpp.o CMakeFiles/cc2.dir/PolishResult.cpp.o CMakeFiles/cc2.dir/Read.cpp.o CMakeFiles/cc2.dir/Recursor.cpp.o CMakeFiles/cc2.dir/Sequence.cpp.o CMakeFiles/cc2.dir/Template.cpp.o /usr/bin/ranlib libcc2.a make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' [ 88%] Built target cc2 make -f src/CMakeFiles/ccs.dir/build.make src/CMakeFiles/ccs.dir/depend make -f src/CMakeFiles/arrow.dir/build.make src/CMakeFiles/arrow.dir/depend make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' cd /<>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/unanimity-3.3.0+dfsg /<>/unanimity-3.3.0+dfsg/src /<>/unanimity-3.3.0+dfsg/build /<>/unanimity-3.3.0+dfsg/build/src /<>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/ccs.dir/DependInfo.cmake --color= make -f src/CMakeFiles/gcpp.dir/build.make src/CMakeFiles/gcpp.dir/depend make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' cd /<>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/unanimity-3.3.0+dfsg /<>/unanimity-3.3.0+dfsg/src /<>/unanimity-3.3.0+dfsg/build /<>/unanimity-3.3.0+dfsg/build/src /<>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/arrow.dir/DependInfo.cmake --color= make -f swig/CMakeFiles/_ConsensusCore2.dir/build.make swig/CMakeFiles/_ConsensusCore2.dir/depend make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' cd /<>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/unanimity-3.3.0+dfsg /<>/unanimity-3.3.0+dfsg/src /<>/unanimity-3.3.0+dfsg/build /<>/unanimity-3.3.0+dfsg/build/src /<>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/gcpp.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' Scanning dependencies of target ccs make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/ccs.dir/build.make src/CMakeFiles/ccs.dir/build Scanning dependencies of target arrow make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/arrow.dir/build.make src/CMakeFiles/arrow.dir/build Scanning dependencies of target gcpp make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/gcpp.dir/build.make src/CMakeFiles/gcpp.dir/build make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' [ 90%] Generating ConsensusCore2_wrap.cxx cd /<>/unanimity-3.3.0+dfsg/build/swig && swig -Wextra -c++ -python -builtin -module ConsensusCore2 -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -o /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx -outdir /<>/unanimity-3.3.0+dfsg/build/swig/lib /<>/unanimity-3.3.0+dfsg/swig/ConsensusCore2.i [ 91%] Building CXX object src/CMakeFiles/gcpp.dir/main/gcpp.cpp.o [ 92%] Building CXX object src/CMakeFiles/ccs.dir/main/ccs.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/ccs.dir/main/ccs.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/main/ccs.cpp cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/gcpp.dir/main/gcpp.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/main/gcpp.cpp [ 93%] Building CXX object src/CMakeFiles/arrow.dir/main/arrow.cpp.o cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/arrow.dir/main/arrow.cpp.o -c /<>/unanimity-3.3.0+dfsg/src/main/arrow.cpp cd /<>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/unanimity-3.3.0+dfsg /<>/unanimity-3.3.0+dfsg/swig /<>/unanimity-3.3.0+dfsg/build /<>/unanimity-3.3.0+dfsg/build/swig /<>/unanimity-3.3.0+dfsg/build/swig/CMakeFiles/_ConsensusCore2.dir/DependInfo.cmake --color= Scanning dependencies of target _ConsensusCore2 make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' make -f swig/CMakeFiles/_ConsensusCore2.dir/build.make swig/CMakeFiles/_ConsensusCore2.dir/build make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build' [ 95%] Building CXX object swig/CMakeFiles/_ConsensusCore2.dir/ConsensusCore2_wrap.cxx.o cd /<>/unanimity-3.3.0+dfsg/build/swig && /usr/bin/c++ -D_ConsensusCore2_EXPORTS -I/<>/unanimity-3.3.0+dfsg/include -I/<>/unanimity-3.3.0+dfsg/build/generated -I/<>/unanimity-3.3.0+dfsg/src -isystem /usr/include/python2.7 -isystem /usr/lib/python2.7/dist-packages/numpy/core/include -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -fPIC -std=c++14 -o CMakeFiles/_ConsensusCore2.dir/ConsensusCore2_wrap.cxx.o -c /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx [ 96%] Linking CXX executable ../gcpp cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gcpp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -pthread -rdynamic CMakeFiles/gcpp.dir/main/gcpp.cpp.o -o ../gcpp -ldl libunanimity.a libcc2.a -lpbbam -Wl,-Bstatic -lpbcopper -Wl,-Bdynamic /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In function ‘PyObject* _wrap_delete_Mutation(PyObject*, PyObject*)’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:32863:14: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] delete arg1; ^~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In function ‘PyObject* _wrap_delete_ScoredMutation(PyObject*, PyObject*)’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:33290:14: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] delete arg1; ^~~~ make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' [ 96%] Built target gcpp /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: At global scope: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:47796:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DoublePair, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:48022:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntPair, /* tp_init */ ^~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:48248:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_LengthPair, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:48492:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_StringSet, /* tp_init */ ^~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:48743:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DoubleVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:48994:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntPairVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:49245:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:49496:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_StringVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:49747:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Uint8Vector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:49998:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DoubleVectorVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:50225:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_NCBI2na, /* tp_init */ ^~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:50456:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_NCBI4na, /* tp_init */ ^~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:50707:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_StateVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:50940:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_AlignParams, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:51167:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_AlignConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:51403:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PairwiseAlignment, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:51638:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_AffineAlignmentParams, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:52107:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Mutation, /* tp_init */ ^~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:52338:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_ScoredMutation, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:52588:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_MutationVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:52838:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_ScoredMutationVector,/* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:53075:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DiploidSite, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:53316:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PolishResult, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:53548:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PolishConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:53777:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_RepeatConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:54009:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_QualityValues, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:54249:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_SNR, /* tp_init */ ^~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:54488:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Read, /* tp_init */ ^~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:54723:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_MappedRead, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:54962:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Evaluator, /* tp_init */ ^~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:55183:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_EasyReadScorer, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:55409:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntegratorConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:55651:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Integrator, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:56105:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PoaGraph, /* tp_init */ ^~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:56337:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PoaConsensus, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer::~SwigMovePointer() [with T = PacBio::Consensus::Mutation]’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:22:28: required from here /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:26:26: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] ~SwigMovePointer() { delete ptr; } ^~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer::~SwigMovePointer() [with T = PacBio::Consensus::ScoredMutation]’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:22:28: required from here /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:26:26: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer& SwigValueWrapper::SwigMovePointer::operator=(SwigValueWrapper::SwigMovePointer&) [with T = PacBio::Consensus::Mutation]’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:33:84: required from ‘SwigValueWrapper& SwigValueWrapper::operator=(const T&) [with T = PacBio::Consensus::Mutation]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:31962:63: required from here /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:27:82: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] SwigMovePointer& operator=(SwigMovePointer& rhs) { T* oldptr = ptr; ptr = 0; delete oldptr; ptr = rhs.ptr; rhs.ptr = 0; return *this; } ^~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer& SwigValueWrapper::SwigMovePointer::operator=(SwigValueWrapper::SwigMovePointer&) [with T = PacBio::Consensus::ScoredMutation]’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:33:84: required from ‘SwigValueWrapper& SwigValueWrapper::operator=(const T&) [with T = PacBio::Consensus::ScoredMutation]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:32689:75: required from here /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:27:82: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*) [with Type = PacBio::Consensus::Mutation; PyObject = _object]’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:4722:64: required from ‘Type swig::as(PyObject*) [with Type = PacBio::Consensus::Mutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:5591:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = PacBio::Consensus::Mutation]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:6050:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:6072:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = PacBio::Consensus::Mutation; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:6201:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = PacBio::Consensus::Mutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:4619:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:33623:34: required from here /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:4690:4: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] delete v; ^~~~~~ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*) [with Type = PacBio::Consensus::ScoredMutation; PyObject = _object]’: /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:4722:64: required from ‘Type swig::as(PyObject*) [with Type = PacBio::Consensus::ScoredMutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:5591:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = PacBio::Consensus::ScoredMutation]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:6050:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:6072:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = PacBio::Consensus::ScoredMutation; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:6201:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = PacBio::Consensus::ScoredMutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:4619:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:35777:34: required from here /<>/unanimity-3.3.0+dfsg/build/swig/ConsensusCore2_wrap.cxx:4690:4: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] [ 97%] Linking CXX executable ../arrow cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/arrow.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -pthread -rdynamic CMakeFiles/arrow.dir/main/arrow.cpp.o -o ../arrow -ldl libunanimity.a libcc2.a -lpbbam -Wl,-Bstatic -lpbcopper -Wl,-Bdynamic make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' [ 97%] Built target arrow [ 98%] Linking CXX executable ../ccs cd /<>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -pthread -rdynamic CMakeFiles/ccs.dir/main/ccs.cpp.o -o ../ccs -ldl libunanimity.a libcc2.a -lpbbam -Wl,-Bstatic -lpbcopper -Wl,-Bdynamic make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' [ 98%] Built target ccs [100%] Linking CXX shared module lib/_ConsensusCore2.so cd /<>/unanimity-3.3.0+dfsg/build/swig && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ConsensusCore2.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -o lib/_ConsensusCore2.so CMakeFiles/_ConsensusCore2.dir/ConsensusCore2_wrap.cxx.o ../src/libcc2.a -Wl,-Bstatic -lpbcopper -Wl,-Bdynamic make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' [100%] Built target _ConsensusCore2 make[2]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' /usr/bin/cmake -E cmake_progress_start /<>/unanimity-3.3.0+dfsg/build/CMakeFiles 0 make[1]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build' dh_auto_test -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build create-stamp debian/debhelper-build-stamp dh build \ --package=python-consensuscore2 \ --no-package=unanimity \ --with python2 \ --buildsystem=pybuild dh_update_autotools_config -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_autoreconf -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg' make[1]: 'override_dh_auto_configure' is up to date. make[1]: Leaving directory '/<>/unanimity-3.3.0+dfsg' dh_auto_build -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py copying swig/ConsensusCore2.py -> /<>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build running build_ext Configuring with command `cmake -Dpbcopper_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbcopper.a -DPYTHON_EXECUTABLE=/usr/bin/python -DUNY_build_tests=0 -DCMAKE_BUILD_TYPE=RelWithDebInfo -Dpbcopper_INCLUDE_DIRS=/usr/include -DUNY_build_bin=0 -DPYTHON_SWIG=1 /<>/unanimity-3.3.0+dfsg` -- The CXX compiler identification is GNU 8.2.0 -- The C compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Boost version: 1.67.0 -- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS -- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS - Success -- Configuring done -- Generating done -- Build files have been written to: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7 Building with command `make _ConsensusCore2` make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[2]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[3]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[4]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' Scanning dependencies of target cc2 make[4]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[4]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [ 2%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o [ 4%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o [ 6%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o [ 8%] Building CXX object src/CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o [ 10%] Building CXX object 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38%] Building CXX object src/CMakeFiles/cc2.dir/models/S_P1C1v2_Model.cpp.o [ 40%] Building CXX object src/CMakeFiles/cc2.dir/models/S_P2C2v5_Model.cpp.o [ 42%] Building CXX object src/CMakeFiles/cc2.dir/models/SnrModelForm.cpp.o [ 44%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaAlignmentMatrix.cpp.o [ 46%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaConsensus.cpp.o [ 48%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaGraph.cpp.o [ 51%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaGraphImpl.cpp.o [ 53%] Building CXX object src/CMakeFiles/cc2.dir/poa/PoaGraphTraversals.cpp.o [ 55%] Building CXX object src/CMakeFiles/cc2.dir/poa/RangeFinder.cpp.o [ 57%] Building CXX object src/CMakeFiles/cc2.dir/Coverage.cpp.o [ 59%] Building CXX object src/CMakeFiles/cc2.dir/EasyReadScorer.cpp.o [ 61%] Building CXX object src/CMakeFiles/cc2.dir/Evaluator.cpp.o [ 63%] Building CXX object src/CMakeFiles/cc2.dir/EvaluatorImpl.cpp.o [ 65%] Building CXX object src/CMakeFiles/cc2.dir/Integrator.cpp.o [ 68%] Building CXX object src/CMakeFiles/cc2.dir/IntervalMask.cpp.o [ 70%] Building CXX object src/CMakeFiles/cc2.dir/ModelConfig.cpp.o [ 72%] Building CXX object src/CMakeFiles/cc2.dir/ModelFactory.cpp.o [ 74%] Building CXX object src/CMakeFiles/cc2.dir/ModelFormFactory.cpp.o [ 76%] Building CXX object src/CMakeFiles/cc2.dir/ModelSelection.cpp.o [ 78%] Building CXX object src/CMakeFiles/cc2.dir/Mutation.cpp.o [ 80%] Building CXX object src/CMakeFiles/cc2.dir/Polish.cpp.o [ 82%] Building CXX object src/CMakeFiles/cc2.dir/PolishResult.cpp.o [ 85%] Building CXX object src/CMakeFiles/cc2.dir/Read.cpp.o [ 87%] Building CXX object src/CMakeFiles/cc2.dir/Recursor.cpp.o [ 89%] Building CXX object src/CMakeFiles/cc2.dir/Sequence.cpp.o [ 91%] Building CXX object src/CMakeFiles/cc2.dir/Template.cpp.o [ 93%] Linking CXX static library libcc2.a make[4]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [ 93%] Built target cc2 make[4]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [ 95%] Generating ConsensusCore2_wrap.cxx Scanning dependencies of target _ConsensusCore2 make[4]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[4]: Entering directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [ 97%] Building CXX object swig/CMakeFiles/_ConsensusCore2.dir/ConsensusCore2_wrap.cxx.o /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In function ‘PyObject* _wrap_delete_Mutation(PyObject*, PyObject*)’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:32863:14: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] delete arg1; ^~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In function ‘PyObject* _wrap_delete_ScoredMutation(PyObject*, PyObject*)’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:33290:14: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] delete arg1; ^~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: At global scope: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:47796:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DoublePair, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:48022:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntPair, /* tp_init */ ^~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:48248:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_LengthPair, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:48492:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_StringSet, /* tp_init */ ^~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:48743:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DoubleVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:48994:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntPairVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:49245:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:49496:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_StringVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:49747:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Uint8Vector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:49998:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DoubleVectorVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:50225:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_NCBI2na, /* tp_init */ ^~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:50456:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_NCBI4na, /* tp_init */ ^~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:50707:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_StateVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:50940:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_AlignParams, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:51167:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_AlignConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:51403:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PairwiseAlignment, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:51638:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_AffineAlignmentParams, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:52107:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Mutation, /* tp_init */ ^~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:52338:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_ScoredMutation, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:52588:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_MutationVector, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:52838:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_ScoredMutationVector,/* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:53075:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_DiploidSite, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:53316:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PolishResult, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:53548:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PolishConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:53777:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_RepeatConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:54009:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_QualityValues, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:54249:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_SNR, /* tp_init */ ^~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:54488:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Read, /* tp_init */ ^~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:54723:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_MappedRead, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:54962:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Evaluator, /* tp_init */ ^~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:55183:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_EasyReadScorer, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:55409:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_IntegratorConfig, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:55651:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_Integrator, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:56105:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PoaGraph, /* tp_init */ ^~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:56337:16: warning: cast between incompatible function types from ‘int (*)(PyObject*, PyObject*)’ {aka ‘int (*)(_object*, _object*)’} to ‘initproc’ {aka ‘int (*)(_object*, _object*, _object*)’} [-Wcast-function-type] (initproc) _wrap_new_PoaConsensus, /* tp_init */ ^~~~~~~~~~~~~~~~~~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer::~SwigMovePointer() [with T = PacBio::Consensus::Mutation]’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:22:28: required from here /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:26:26: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] ~SwigMovePointer() { delete ptr; } ^~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer::~SwigMovePointer() [with T = PacBio::Consensus::ScoredMutation]’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:22:28: required from here /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:26:26: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer& SwigValueWrapper::SwigMovePointer::operator=(SwigValueWrapper::SwigMovePointer&) [with T = PacBio::Consensus::Mutation]’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:33:84: required from ‘SwigValueWrapper& SwigValueWrapper::operator=(const T&) [with T = PacBio::Consensus::Mutation]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:31962:63: required from here /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:27:82: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] SwigMovePointer& operator=(SwigMovePointer& rhs) { T* oldptr = ptr; ptr = 0; delete oldptr; ptr = rhs.ptr; rhs.ptr = 0; return *this; } ^~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘SwigValueWrapper::SwigMovePointer& SwigValueWrapper::SwigMovePointer::operator=(SwigValueWrapper::SwigMovePointer&) [with T = PacBio::Consensus::ScoredMutation]’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:33:84: required from ‘SwigValueWrapper& SwigValueWrapper::operator=(const T&) [with T = PacBio::Consensus::ScoredMutation]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:32689:75: required from here /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:27:82: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*) [with Type = PacBio::Consensus::Mutation; PyObject = _object]’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:4722:64: required from ‘Type swig::as(PyObject*) [with Type = PacBio::Consensus::Mutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:5591:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = PacBio::Consensus::Mutation]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:6050:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:6072:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector; T = PacBio::Consensus::Mutation; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:6201:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = PacBio::Consensus::Mutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:4619:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:33623:34: required from here /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:4690:4: warning: deleting object of polymorphic class type ‘PacBio::Consensus::Mutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] delete v; ^~~~~~ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx: In instantiation of ‘static Type swig::traits_as::as(PyObject*) [with Type = PacBio::Consensus::ScoredMutation; PyObject = _object]’: /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:4722:64: required from ‘Type swig::as(PyObject*) [with Type = PacBio::Consensus::ScoredMutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:5591:20: required from ‘swig::SwigPySequence_Ref::operator T() const [with T = PacBio::Consensus::ScoredMutation]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:6050:30: required from ‘void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont; Seq = std::vector >]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:6072:12: required from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, swig::traits_asptr_stdseq::sequence**) [with Seq = std::vector >; T = PacBio::Consensus::ScoredMutation; PyObject = _object; swig::traits_asptr_stdseq::sequence = std::vector >]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:6201:52: required from ‘static int swig::traits_asptr >::asptr(PyObject*, std::vector**) [with T = PacBio::Consensus::ScoredMutation; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:4619:37: required from ‘int swig::asptr(PyObject*, Type**) [with Type = std::vector >; PyObject = _object]’ /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:35777:34: required from here /<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7/swig/ConsensusCore2_wrap.cxx:4690:4: warning: deleting object of polymorphic class type ‘PacBio::Consensus::ScoredMutation’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor] [100%] Linking CXX shared module lib/_ConsensusCore2.so make[4]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [100%] Built target _ConsensusCore2 make[3]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[2]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[1]: Leaving directory '/<>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' dh_auto_test -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild I: pybuild base:217: cd /<>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary \ --package=unanimity \ --no-package=python-consensuscore2 \ --buildsystem=cmake \ --builddirectory=build debian/rules binary-arch make[1]: Entering directory '/<>/unanimity-3.3.0+dfsg' pandoc --standalone --from markdown --to html doc/JULIET.md -o doc/JULIET.html [WARNING] This document format requires a nonempty element. Please specify either 'title' or 'pagetitle' in the metadata. Falling back to 'JULIET' pandoc --standalone --from markdown --to html doc/PBCCS.md -o doc/PBCCS.html [WARNING] This document format requires a nonempty <title> element. Please specify either 'title' or 'pagetitle' in the metadata. Falling back to 'PBCCS' dh binary-arch \ --package=unanimity \ --no-package=python-consensuscore2 \ --buildsystem=cmake \ --builddirectory=build dh_testroot -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_prep -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_auto_install -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build cd build && make -j4 install DESTDIR=/<<BUILDDIR>>/unanimity-3.3.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' /usr/bin/cmake -S/<<BUILDDIR>>/unanimity-3.3.0+dfsg -B/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/depend make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/depend make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/cc2.dir/DependInfo.cmake --color= make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/unanimity.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/build make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/build make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/unanimity.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/cc2.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' [ 65%] Built target unanimity [ 88%] Built target cc2 make -f src/CMakeFiles/ccs.dir/build.make src/CMakeFiles/ccs.dir/depend make -f src/CMakeFiles/arrow.dir/build.make src/CMakeFiles/arrow.dir/depend make -f src/CMakeFiles/gcpp.dir/build.make src/CMakeFiles/gcpp.dir/depend make -f swig/CMakeFiles/_ConsensusCore2.dir/build.make swig/CMakeFiles/_ConsensusCore2.dir/depend make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/ccs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/gcpp.dir/DependInfo.cmake --color= make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/arrow.dir/DependInfo.cmake --color= cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/swig /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/swig /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/swig/CMakeFiles/_ConsensusCore2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/ccs.dir/build.make src/CMakeFiles/ccs.dir/build make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/arrow.dir/build.make src/CMakeFiles/arrow.dir/build make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/ccs.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/arrow.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/gcpp.dir/build.make src/CMakeFiles/gcpp.dir/build make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f swig/CMakeFiles/_ConsensusCore2.dir/build.make swig/CMakeFiles/_ConsensusCore2.dir/build [ 91%] Built target arrow make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/gcpp.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' [ 93%] Built target ccs make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'swig/CMakeFiles/_ConsensusCore2.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' [ 98%] Built target gcpp [100%] Built target _ConsensusCore2 make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' /usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/tmp/usr/bin/ccs -- Installing: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/tmp/usr/bin/arrow -- Installing: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/tmp/usr/bin/gcpp make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' dh_install -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installdocs -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installchangelogs -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installman -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installinit -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installsystemduser -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_perl -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_link -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_strip_nondeterminism -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_compress -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_fixperms -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_missing -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_missing: usr/bin/arrow exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: python-consensuscore2 (0), unanimity (2) * dh_installdocs: python-consensuscore2 (0), unanimity (3) * dh_installman: python-consensuscore2 (0), unanimity (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_strip -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_makeshlibs -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_shlibdeps -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installdeb -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_gencontrol -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package unanimity: substitution variable ${python:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package unanimity: substitution variable ${python:Depends} used, but is not defined dh_md5sums -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_builddeb -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing unanimity (in debian/unanimity); do_strip: , oemstrip: pkgstriptranslations: processing unanimity-dbgsym (in debian/.debhelper/unanimity/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/unanimity/DEBIAN/control, package unanimity, directory debian/unanimity pkgstripfiles: processing control file: debian/.debhelper/unanimity/dbgsym-root/DEBIAN/control, package unanimity-dbgsym, directory debian/.debhelper/unanimity/dbgsym-root dpkg-deb: building package 'unanimity-dbgsym' in 'debian/.debhelper/scratch-space/build-unanimity/unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package unanimity ... oo pkgstripfiles: PNG optimization (2/0) for package unanimity took 6 s dpkg-deb: building package 'unanimity' in '../unanimity_3.3.0+dfsg-1ubuntu3_amd64.deb'. Renaming unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb to unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb dh binary-arch \ --package=python-consensuscore2 \ --no-package=unanimity \ --with python2 \ --buildsystem=pybuild dh_testroot -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_prep -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_auto_install -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2 running install running build running build_py running build_ext Configuring with command `cmake -Dpbcopper_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbcopper.a -DPYTHON_EXECUTABLE=/usr/bin/python -DUNY_build_tests=0 -DCMAKE_BUILD_TYPE=RelWithDebInfo -Dpbcopper_INCLUDE_DIRS=/usr/include -DUNY_build_bin=0 -DPYTHON_SWIG=1 /<<BUILDDIR>>/unanimity-3.3.0+dfsg` -- Boost version: 1.67.0 -- Configuring done -- Generating done -- Build files have been written to: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7 Building with command `make _ConsensusCore2` make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[5]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[5]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [ 93%] Built target cc2 make[5]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[5]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [100%] Built target _ConsensusCore2 make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' running install_lib creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2 creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7 creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages copying /<<BUILDDIR>>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build/_ConsensusCore2.so -> /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages copying /<<BUILDDIR>>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build/ConsensusCore2.py -> /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages byte-compiling /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages/ConsensusCore2.py to ConsensusCore2.pyc running install_egg_info running egg_info creating swig/ConsensusCore2.egg-info writing requirements to swig/ConsensusCore2.egg-info/requires.txt writing swig/ConsensusCore2.egg-info/PKG-INFO writing top-level names to swig/ConsensusCore2.egg-info/top_level.txt writing dependency_links to swig/ConsensusCore2.egg-info/dependency_links.txt writing manifest file 'swig/ConsensusCore2.egg-info/SOURCES.txt' reading manifest file 'swig/ConsensusCore2.egg-info/SOURCES.txt' writing manifest file 'swig/ConsensusCore2.egg-info/SOURCES.txt' Copying swig/ConsensusCore2.egg-info to /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installdocs -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installchangelogs -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installman -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild debian/rules override_dh_python2 make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' dh_python2 I: dh_python2 fs:329: renaming _ConsensusCore2.so to _ConsensusCore2.x86_64-linux-gnu.so dh_numpy make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' dh_installinit -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installsystemduser -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_perl -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_link -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_compress -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_fixperms -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_missing -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_dwz -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_strip -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_makeshlibs -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_shlibdeps -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installdeb -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_gencontrol -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Versions} unused, but is defined dh_md5sums -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_builddeb -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python-consensuscore2 (in debian/python-consensuscore2); do_strip: , oemstrip: pkgstriptranslations: processing python-consensuscore2-dbgsym (in debian/.debhelper/python-consensuscore2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python-consensuscore2/DEBIAN/control, package python-consensuscore2, directory debian/python-consensuscore2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-consensuscore2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-consensuscore2' in '../python-consensuscore2_3.3.0+dfsg-1ubuntu3_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/python-consensuscore2/dbgsym-root/DEBIAN/control, package python-consensuscore2-dbgsym, directory debian/.debhelper/python-consensuscore2/dbgsym-root dpkg-deb: building package 'python-consensuscore2-dbgsym' in 'debian/.debhelper/scratch-space/build-python-consensuscore2/python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb'. Renaming python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb to python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' Use of uninitialized value in numeric gt (>) at /usr/bin/dh line 821. dh binary \ --package=python-consensuscore2 \ --no-package=unanimity \ --with python2 \ --buildsystem=pybuild debian/rules binary-arch make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' dh binary-arch \ --package=unanimity \ --no-package=python-consensuscore2 \ --buildsystem=cmake \ --builddirectory=build dh_testroot -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_prep -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_auto_install -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build cd build && make -j4 install DESTDIR=/<<BUILDDIR>>/unanimity-3.3.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' /usr/bin/cmake -S/<<BUILDDIR>>/unanimity-3.3.0+dfsg -B/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/depend make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/depend make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/cc2.dir/DependInfo.cmake --color= cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/unanimity.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/build make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/build make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/cc2.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/unanimity.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' [ 69%] Built target unanimity [ 88%] Built target cc2 make -f src/CMakeFiles/ccs.dir/build.make src/CMakeFiles/ccs.dir/depend make -f src/CMakeFiles/arrow.dir/build.make src/CMakeFiles/arrow.dir/depend make -f src/CMakeFiles/gcpp.dir/build.make src/CMakeFiles/gcpp.dir/depend make -f swig/CMakeFiles/_ConsensusCore2.dir/build.make swig/CMakeFiles/_ConsensusCore2.dir/depend make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/arrow.dir/DependInfo.cmake --color= make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/ccs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/gcpp.dir/DependInfo.cmake --color= make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/swig /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/swig /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/swig/CMakeFiles/_ConsensusCore2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/ccs.dir/build.make src/CMakeFiles/ccs.dir/build make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/gcpp.dir/build.make src/CMakeFiles/gcpp.dir/build make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/gcpp.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f src/CMakeFiles/arrow.dir/build.make src/CMakeFiles/arrow.dir/build make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/ccs.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make -f swig/CMakeFiles/_ConsensusCore2.dir/build.make swig/CMakeFiles/_ConsensusCore2.dir/build make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'src/CMakeFiles/arrow.dir/build'. [ 91%] Built target gcpp make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[4]: Nothing to be done for 'swig/CMakeFiles/_ConsensusCore2.dir/build'. make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' [ 93%] Built target ccs [ 96%] Built target arrow [100%] Built target _ConsensusCore2 make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' /usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/tmp/usr/bin/ccs -- Installing: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/tmp/usr/bin/arrow -- Installing: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/tmp/usr/bin/gcpp make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build' dh_install -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installdocs -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installchangelogs -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installman -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installinit -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installsystemduser -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_perl -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_link -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_strip_nondeterminism -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_compress -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_fixperms -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_missing -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_missing: usr/bin/arrow exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: python-consensuscore2 (0), unanimity (2) * dh_installdocs: python-consensuscore2 (0), unanimity (3) * dh_installman: python-consensuscore2 (0), unanimity (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_strip -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_makeshlibs -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_shlibdeps -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_installdeb -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_gencontrol -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package unanimity: substitution variable ${python:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package unanimity: substitution variable ${python:Depends} used, but is not defined dh_md5sums -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build dh_builddeb -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing unanimity (in debian/unanimity); do_strip: , oemstrip: pkgstriptranslations: processing unanimity-dbgsym (in debian/.debhelper/unanimity/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/unanimity/DEBIAN/control, package unanimity, directory debian/unanimity pkgstripfiles: Running PNG optimization (using 4 cpus) for package unanimity ... opkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/unanimity/dbgsym-root/DEBIAN/control, package unanimity-dbgsym, directory debian/.debhelper/unanimity/dbgsym-root dpkg-deb: building package 'unanimity-dbgsym' in 'debian/.debhelper/scratch-space/build-unanimity/unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb'. o pkgstripfiles: PNG optimization (2/0) for package unanimity took 6 s dpkg-deb: building package 'unanimity' in '../unanimity_3.3.0+dfsg-1ubuntu3_amd64.deb'. Renaming unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb to unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb dh binary-arch \ --package=python-consensuscore2 \ --no-package=unanimity \ --with python2 \ --buildsystem=pybuild dh_testroot -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_prep -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_auto_install -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2 running install running build running build_py running build_ext Configuring with command `cmake -Dpbcopper_LIBRARIES=/usr/lib/x86_64-linux-gnu/libpbcopper.a -DPYTHON_EXECUTABLE=/usr/bin/python -DUNY_build_tests=0 -DCMAKE_BUILD_TYPE=RelWithDebInfo -Dpbcopper_INCLUDE_DIRS=/usr/include -DUNY_build_bin=0 -DPYTHON_SWIG=1 /<<BUILDDIR>>/unanimity-3.3.0+dfsg` -- Boost version: 1.67.0 -- Configuring done -- Generating done -- Build files have been written to: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7 Building with command `make _ConsensusCore2` make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[4]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[5]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[5]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [ 93%] Built target cc2 make[5]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[5]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' [100%] Built target _ConsensusCore2 make[4]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/temp.linux-amd64-2.7' running install_lib creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2 creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7 creating /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages copying /<<BUILDDIR>>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build/_ConsensusCore2.so -> /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages copying /<<BUILDDIR>>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build/ConsensusCore2.py -> /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages byte-compiling /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages/ConsensusCore2.py to ConsensusCore2.pyc running install_egg_info running egg_info writing requirements to swig/ConsensusCore2.egg-info/requires.txt writing swig/ConsensusCore2.egg-info/PKG-INFO writing top-level names to swig/ConsensusCore2.egg-info/top_level.txt writing dependency_links to swig/ConsensusCore2.egg-info/dependency_links.txt reading manifest file 'swig/ConsensusCore2.egg-info/SOURCES.txt' writing manifest file 'swig/ConsensusCore2.egg-info/SOURCES.txt' Copying swig/ConsensusCore2.egg-info to /<<BUILDDIR>>/unanimity-3.3.0+dfsg/debian/python-consensuscore2/usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installdocs -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installchangelogs -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installman -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild debian/rules override_dh_python2 make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' dh_python2 I: dh_python2 fs:329: renaming _ConsensusCore2.so to _ConsensusCore2.x86_64-linux-gnu.so dh_numpy make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' dh_installinit -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installsystemduser -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_perl -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_link -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_compress -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_fixperms -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_missing -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_dwz -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_strip -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_makeshlibs -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_shlibdeps -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_installdeb -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_gencontrol -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-consensuscore2: substitution variable ${python:Versions} unused, but is defined dh_md5sums -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild dh_builddeb -a -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python-consensuscore2 (in debian/python-consensuscore2); do_strip: , oemstrip: pkgstriptranslations: processing python-consensuscore2-dbgsym (in debian/.debhelper/python-consensuscore2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python-consensuscore2/DEBIAN/control, package python-consensuscore2, directory debian/python-consensuscore2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-consensuscore2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-consensuscore2' in '../python-consensuscore2_3.3.0+dfsg-1ubuntu3_amd64.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/python-consensuscore2/dbgsym-root/DEBIAN/control, package python-consensuscore2-dbgsym, directory debian/.debhelper/python-consensuscore2/dbgsym-root dpkg-deb: building package 'python-consensuscore2-dbgsym' in 'debian/.debhelper/scratch-space/build-python-consensuscore2/python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb'. Renaming python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.deb to python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg' Use of uninitialized value in numeric gt (>) at /usr/bin/dh line 821. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lgw01-amd64-035.buildd> >../unanimity_3.3.0+dfsg-1ubuntu3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190211-1951 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ unanimity_3.3.0+dfsg-1ubuntu3_amd64.changes: -------------------------------------------- Format: 1.8 Date: Mon, 11 Feb 2019 11:40:11 -0800 Source: unanimity Binary: unanimity python-consensuscore2 Architecture: amd64 Version: 3.3.0+dfsg-1ubuntu3 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon <buildd@lgw01-amd64-035.buildd> Changed-By: Steve Langasek <steve.langasek@ubuntu.com> Description: python-consensuscore2 - generate consensus sequences for PacBio data -- Python 2 unanimity - generate and process accurate consensus nucleotide sequences Changes: unanimity (3.3.0+dfsg-1ubuntu3) disco; urgency=medium . * No-change rebuild against libpbbam0.19.0. Checksums-Sha1: 4e039fe7afe7c8bcff5e4bf354e27ba04fa7e06c 9428776 python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb 915cea93dd134ca3fab681789535fbbde3a6886f 606792 python-consensuscore2_3.3.0+dfsg-1ubuntu3_amd64.deb c2c3ddcc30a442c9e1ce528111bb88468b3f7fdf 15645300 unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb 064fda8d6c6c2abd79e12b9bcb8b081b4e28ae01 8958 unanimity_3.3.0+dfsg-1ubuntu3_amd64.buildinfo d10e6e6c9a83fc7723b2e4bdfe6dd7ba70a254ba 932196 unanimity_3.3.0+dfsg-1ubuntu3_amd64.deb Checksums-Sha256: 349c0baf66e8aa54c4b00c845d42aad941ac920d051b83589af24c66034aabce 9428776 python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb 494e10b0332b02b685b3b3dd05ca4450c67faea9cd7c26a833efdc3e435d05b5 606792 python-consensuscore2_3.3.0+dfsg-1ubuntu3_amd64.deb 67cb589f11b5ad8d5cc7680aa60e1feddbc6c24139ca631bce3c2bc5f78fdde0 15645300 unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb 431d222ac008e4ccf79ff90c87eccbb7853bb3c76d2777524d516bc5e7ff8889 8958 unanimity_3.3.0+dfsg-1ubuntu3_amd64.buildinfo 59c5686818d9914716047fe4021f34c3d979909d397c7936b6f9305ccbb21a8a 932196 unanimity_3.3.0+dfsg-1ubuntu3_amd64.deb Files: 1a71dfd46886276a9babd0d901af3ec7 9428776 debug optional python-consensuscore2-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb 38cde49346af953882e1df87f36344ab 606792 python optional python-consensuscore2_3.3.0+dfsg-1ubuntu3_amd64.deb 2bac025fb08007c6de9eeb0304f86ee4 15645300 debug optional unanimity-dbgsym_3.3.0+dfsg-1ubuntu3_amd64.ddeb 11c2825d09566b83e819712dca534de7 8958 science optional unanimity_3.3.0+dfsg-1ubuntu3_amd64.buildinfo 75ce34f8b2732143b381d46bfcd7caa1 932196 science optional unanimity_3.3.0+dfsg-1ubuntu3_amd64.deb Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python-consensuscore2_3.3.0+dfsg-1ubuntu3_amd64.deb --------------------------------------------------- new debian package, version 2.0. size 606792 bytes: control archive=1376 bytes. 1026 bytes, 19 lines control 797 bytes, 8 lines md5sums 171 bytes, 9 lines * postinst #!/bin/sh 281 bytes, 14 lines * prerm #!/bin/sh Package: python-consensuscore2 Source: unanimity Version: 3.3.0+dfsg-1ubuntu3 Architecture: amd64 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> Installed-Size: 2504 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.4), libstdc++6 (>= 6), python (<< 2.8), python (>= 2.7~), python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7~) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/unanimity Description: generate consensus sequences for PacBio data -- Python 2 ConsensusCore2 embodies core C++ routines underlying the Arrow HMM algorithm for PacBio multi-sequence consensus. Arrow is the successor to the Quiver model---a CRF model that was embodied in the ConsensusCore C++ library. Compared to Quiver, the Arrow model is more statistically principled and easier and more robust to train. . This package installs the library for Python 2. Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> drwxr-xr-x root/root 0 2019-02-11 19:40 ./ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/ -rw-r--r-- root/root 304 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/requires.txt -rw-r--r-- root/root 31 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ConsensusCore2-3.0.0.egg-info/top_level.txt -rw-r--r-- root/root 3432 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/ConsensusCore2.py -rw-r--r-- root/root 2533512 2019-02-11 19:40 ./usr/lib/python2.7/dist-packages/_ConsensusCore2.x86_64-linux-gnu.so drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/doc/python-consensuscore2/ -rw-r--r-- root/root 557 2019-02-11 19:40 ./usr/share/doc/python-consensuscore2/changelog.Debian.gz -rw-r--r-- root/root 9015 2019-01-24 10:40 ./usr/share/doc/python-consensuscore2/copyright unanimity_3.3.0+dfsg-1ubuntu3_amd64.deb --------------------------------------- new debian package, version 2.0. size 932196 bytes: control archive=1108 bytes. 912 bytes, 19 lines control 652 bytes, 10 lines md5sums Package: unanimity Version: 3.3.0+dfsg-1ubuntu3 Architecture: amd64 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> Installed-Size: 3677 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.4), libpbbam0.19.0 (>= 0.19.0+dfsg), libstdc++6 (>= 7), libpbbam Section: science Priority: optional Homepage: https://github.com/PacificBiosciences/unanimity Description: generate and process accurate consensus nucleotide sequences Unanimity provides a set of tools for consensus sequences from Pacific Biosciences sequencing data: * Circular Consensus Calling ccs takes multiple reads of the same SMRTbell sequence and combines them, employing a statistical model, to produce one high quality consensus sequence. * Minor variant caller juliet identifies minor variants from aligned ccs reads. Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> drwxr-xr-x root/root 0 2019-02-11 19:40 ./ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/bin/ -rwxr-xr-x root/root 2079184 2019-02-11 19:40 ./usr/bin/ccs -rwxr-xr-x root/root 1456520 2019-02-11 19:40 ./usr/bin/gcpp drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/doc/unanimity/ -rw-r--r-- root/root 783 2019-02-11 19:40 ./usr/share/doc/unanimity/JULIET.html -rw-r--r-- root/root 17602 2019-02-11 19:40 ./usr/share/doc/unanimity/PBCCS.html -rw-r--r-- root/root 557 2019-02-11 19:40 ./usr/share/doc/unanimity/changelog.Debian.gz -rw-r--r-- root/root 9015 2019-01-24 10:40 ./usr/share/doc/unanimity/copyright drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/doc/unanimity/img/ -rw-r--r-- root/root 135947 2019-01-15 15:42 ./usr/share/doc/unanimity/img/juliet.png -rw-r--r-- root/root 1193 2019-02-11 19:40 ./usr/share/doc/unanimity/img/unanimity.png drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-11 19:40 ./usr/share/man/man1/ -rw-r--r-- root/root 1175 2019-02-11 19:40 ./usr/share/man/man1/ccs.1.gz -rw-r--r-- root/root 2472 2019-02-11 19:40 ./usr/share/man/man1/gcpp.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<<BUILDDIR>> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 967168 Build-Time: 483 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 41 Job: unanimity_3.3.0+dfsg-1ubuntu3.dsc Machine Architecture: amd64 Package: unanimity Package-Time: 525 Source-Version: 3.3.0+dfsg-1ubuntu3 Space: 967168 Status: successful Version: 3.3.0+dfsg-1ubuntu3 -------------------------------------------------------------------------------- Finished at 20190211-1951 Build needed 00:08:45, 967168k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-16380265 Scanning for processes to kill in build PACKAGEBUILD-16380265