https://launchpad.net/ubuntu/+source/uncalled/2.3+ds-1build1/+build/26953895 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-088 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 2 Nov 20:26:13 ntpdate[848271]: adjust time server 10.211.37.1 offset 0.000490 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-26953895 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 Starting target for build PACKAGEBUILD-26953895 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26953895 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 Updating target for build PACKAGEBUILD-26953895 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1340 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.6 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6003 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [112 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [51.7 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [700 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [319 kB] Fetched 24.1 MB in 36s (671 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash-completion binutils binutils-common binutils-riscv64-linux-gnu cpp-13 debianutils diffutils dpkg dpkg-dev g++-13 gcc-13 gcc-13-base grep libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-13-dev libgcc-s1 libgnutls30 libgomp1 libidn2-0 liblzma5 libncursesw6 libnsl-dev libnsl2 libpng16-16 libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 67 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 83.1 MB of archives. After this operation, 2147 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl-dev riscv64 1.3.0-3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6-dev riscv64 2.38-3ubuntu1 [3401 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-dev-bin riscv64 2.38-3ubuntu1 [19.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl2 riscv64 1.3.0-3 [42.0 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 13.2.0-6ubuntu1 [45.4 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-base riscv64 13.2.0-6ubuntu1 [44.3 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 13.2.0-6ubuntu1 [57.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 13.2.0-6ubuntu1 [140 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 13.2.0-6ubuntu1 [9488 B] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 13.2.0-6ubuntu1 [2509 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13 riscv64 13.2.0-6ubuntu1 [11.9 MB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++-13-dev riscv64 13.2.0-6ubuntu1 [5449 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-13-dev riscv64 13.2.0-6ubuntu1 [3123 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13 riscv64 13.2.0-6ubuntu1 [20.8 MB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13 riscv64 13.2.0-6ubuntu1 [10.5 MB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 13.2.0-6ubuntu1 [779 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libctf-nobfd0 riscv64 2.41-6ubuntu1 [105 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libctf0 riscv64 2.41-6ubuntu1 [103 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsframe1 riscv64 2.41-6ubuntu1 [15.6 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbinutils riscv64 2.41-6ubuntu1 [483 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 binutils-common riscv64 2.41-6ubuntu1 [221 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 binutils riscv64 2.41-6ubuntu1 [2996 B] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.41-6ubuntu1 [894 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6 riscv64 2.38-3ubuntu1 [2742 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 base-files riscv64 13ubuntu4 [73.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 debianutils riscv64 5.14 [88.8 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblzma5 riscv64 5.4.4-0.1 [127 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapparmor1 riscv64 4.0.0~alpha2-0ubuntu6 [48.2 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit-common all 1:3.1.1-1build1 [5510 B] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcap-ng0 riscv64 0.8.3-1build3 [15.3 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit1 riscv64 1:3.1.1-1build1 [47.1 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libselinux1 riscv64 3.5-1build1 [83.1 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl3 riscv64 3.0.10-1ubuntu2.1 [1712 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-sysv riscv64 253.5-1ubuntu7 [11.5 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd riscv64 253.5-1ubuntu7 [3067 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd-shared riscv64 253.5-1ubuntu7 [1903 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd0 riscv64 253.5-1ubuntu7 [423 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 libudev1 riscv64 253.5-1ubuntu7 [163 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0 riscv64 2.7.6 [989 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg riscv64 1.22.1ubuntu1 [1396 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-3 [167 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-bin riscv64 6.4+20231016-1 [184 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.2 [52.1 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-bin riscv64 2.38-3ubuntu1 [601 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-base all 6.4+20231016-1 [24.7 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.6 [1335 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.6 [225 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 libidn2-0 riscv64 2.3.4-1build1 [99.3 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgnutls30 riscv64 3.8.1-4ubuntu3 [995 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage-common all 3.5-1build1 [9982 B] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage2 riscv64 3.5-1build1 [97.7 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncursesw6 riscv64 6.4+20231016-1 [150 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtinfo6 riscv64 6.4+20231016-1 [107 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20230808-1 [125 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4 [23.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsqlite3-0 riscv64 3.43.2-1 [693 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 openssl riscv64 3.0.10-1ubuntu2.1 [1170 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpng16-16 riscv64 1.6.40-2 [189 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 xz-utils riscv64 5.4.4-0.1 [268 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg-dev all 1.22.1ubuntu1 [1148 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdpkg-perl all 1.22.1ubuntu1 [285 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 optipng riscv64 0.7.7-3 [86.9 kB] Preconfiguring packages ... Fetched 83.1 MB in 17s (4869 kB/s) (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3_riscv64.deb ... Unpacking libnsl-dev:riscv64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../1-libc6-dev_2.38-3ubuntu1_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../2-libc-dev-bin_2.38-3ubuntu1_riscv64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libnsl2_1.3.0-3_riscv64.deb ... Unpacking libnsl2:riscv64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../4-libcc1-0_13.2.0-6ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../5-gcc-13-base_13.2.0-6ubuntu1_riscv64.deb ... Unpacking gcc-13-base:riscv64 (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:riscv64 (13.2.0-6ubuntu1) ... 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Setting up gcc-13 (13.2.0-6ubuntu1) ... Setting up g++-13 (13.2.0-6ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26953895 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-26953895 --arch=riscv64 --dist=noble-proposed --nolog uncalled_2.3+ds-1build1.dsc Initiating build PACKAGEBUILD-26953895 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-088.buildd +==============================================================================+ | uncalled 2.3+ds-1build1 (riscv64) Thu, 02 Nov 2023 20:32:39 +0000 | +==============================================================================+ Package: uncalled Version: 2.3+ds-1build1 Source Version: 2.3+ds-1build1 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26953895/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/uncalled-Zk5W8q/resolver-SlqIAa' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- uncalled_2.3+ds-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/uncalled-Zk5W8q/uncalled-2.3+ds' with '<>' I: NOTICE: Log filtering will replace 'build/uncalled-Zk5W8q' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), python3-all, python3-all-dev, python3-setuptools, python3-pybind11, python3-numpy, pdqsort-dev, dh-python, libbwa-dev, libhdf5-dev, pkg-config, libfast5-dev, libtoml11-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), python3-all, python3-all-dev, python3-setuptools, python3-pybind11, python3-numpy, pdqsort-dev, dh-python, libbwa-dev, libhdf5-dev, pkg-config, libfast5-dev, libtoml11-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [445 B] Get:5 copy:/<>/apt_archive ./ Packages [531 B] Fetched 1933 B in 0s (3924 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas3 libbrotli1 libbwa-dev libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfast5-dev libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu72 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtoml11-dev libtool libuchardet0 libxml2 m4 man-db media-types pdqsort-dev pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-pybind11 python3-setuptools python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libhdf5-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl pybind11-doc python3-doc python3-tk python3-venv gfortran python3-pytest python-setuptools-doc python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl libeigen3-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas3 libbrotli1 libbwa-dev libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfast5-dev libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu72 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpkgconf3 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtoml11-dev libtool libuchardet0 libxml2 m4 man-db media-types pdqsort-dev pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-pybind11 python3-setuptools python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. 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1.10.8+repack1-1ubuntu1 [26.7 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-cpp-103-1 riscv64 1.10.8+repack1-1ubuntu1 [121 kB] Get:70 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-hl-cpp-100 riscv64 1.10.8+repack1-1ubuntu1 [10.6 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main riscv64 zlib1g-dev riscv64 1:1.2.13.dfsg-1ubuntu5 [972 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8 riscv64 2.1.5-2ubuntu1 [119 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8-dev riscv64 2.1.5-2ubuntu1 [434 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8 riscv64 8c-2ubuntu11 [2150 B] Get:75 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu11 [1486 B] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-dev riscv64 8c-2ubuntu11 [1484 B] Get:77 http://ftpmaster.internal/ubuntu noble/universe riscv64 libaec-dev riscv64 1.1.2-1 [46.2 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl-dev riscv64 3.0.10-1ubuntu2.1 [5120 kB] Get:79 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-dev riscv64 1.10.8+repack1-1ubuntu1 [6172 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libfast5-dev all 0.6.5-7build3 [50.3 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-sphinxdoc all 5.3.0-7 [130 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 liblapack3 riscv64 3.11.0-2build1 [2088 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 libpkgconf3 riscv64 1.8.1-2 [27.8 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 libpython3.11 riscv64 3.11.6-3 [2197 kB] Get:87 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riscv64 pkgconf riscv64 1.8.1-2 [16.7 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main riscv64 pkg-config riscv64 1.8.1-2 [7172 B] Get:98 http://ftpmaster.internal/ubuntu noble/universe riscv64 pybind11-dev all 2.11.1-1 [159 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.12 riscv64 3.12.0-1 [629 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all riscv64 3.11.4-5ubuntu1 [912 B] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.11-dev riscv64 3.11.6-3 [500 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-dev riscv64 3.11.4-5ubuntu1 [26.8 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 python3.12-dev riscv64 3.12.0-1 [498 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all-dev riscv64 3.11.4-5ubuntu1 [920 B] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-numpy riscv64 1:1.24.2-1ubuntu1 [4631 kB] Get:106 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-pybind11 all 2.11.1-1 [169 kB] Preconfiguring packages ... 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Setting up libnghttp2-14:riscv64 (1.57.0-1) ... Setting up libmagic1:riscv64 (1:5.45-2) ... Setting up gettext-base (0.21-13build1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up pybind11-dev (2.11.1-1) ... Setting up libaec0:riscv64 (1.1.2-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libpkgconf3:riscv64 (1.8.1-2) ... Setting up libexpat1-dev:riscv64 (2.5.0-2) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up pdqsort-dev (0.0.0+git20180419-2.1) ... Setting up libssl-dev:riscv64 (3.0.10-1ubuntu2.1) ... Setting up autopoint (0.21-13build1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libjpeg-turbo8:riscv64 (2.1.5-2ubuntu1) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-3) ... Setting up libssh-4:riscv64 (0.10.5-3ubuntu1) ... Setting up libgfortran5:riscv64 (13.2.0-6ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libbwa-dev (0.7.17-7) ... Setting up zlib1g-dev:riscv64 (1:1.2.13.dfsg-1ubuntu5) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libelf1:riscv64 (0.189-4) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3build1) ... Setting up libldap2:riscv64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up libsz2:riscv64 (1.1.2-1) ... Setting up libpython3-stdlib:riscv64 (3.11.4-5ubuntu1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjpeg8:riscv64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.0-1) ... Setting up python3.11 (3.11.6-3) ... Setting up libdw1:riscv64 (0.189-4) ... Setting up libjpeg-turbo8-dev:riscv64 (2.1.5-2ubuntu1) ... Setting up liblapack3:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up gettext (0.21-13build1) ... Setting up libpython3.12-stdlib:riscv64 (3.12.0-1) ... Setting up libpython3.11:riscv64 (3.11.6-3) ... Setting up libtool (2.4.7-7) ... Setting up python3.12 (3.12.0-1) ... Setting up libaec-dev:riscv64 (1.1.2-1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up pkgconf:riscv64 (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libpython3.11-dev:riscv64 (3.11.6-3) ... Setting up pkg-config:riscv64 (1.8.1-2) ... Setting up libjs-sphinxdoc (5.3.0-7) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:riscv64 (8.2.1-1ubuntu3.1) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu11) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up libpython3.12:riscv64 (3.12.0-1) ... Setting up python3-pybind11 (2.11.1-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libpython3-dev:riscv64 (3.11.4-5ubuntu1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.6-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu11) ... Setting up python3-all (3.11.4-5ubuntu1) ... Setting up libpython3.12-dev:riscv64 (3.12.0-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcurl4-openssl-dev:riscv64 (8.2.1-1ubuntu3.1) ... Setting up libpython3-all-dev:riscv64 (3.11.4-5ubuntu1) ... Setting up python3-dev (3.11.4-5ubuntu1) ... Setting up python3.12-dev (3.12.0-1) ... Setting up python3-numpy (1:1.24.2-1ubuntu1) ... Setting up libhdf5-103-1:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-cpp-103-1:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-hl-100:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up dh-python (6.20231025) ... Setting up python3-all-dev (3.11.4-5ubuntu1) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up libhdf5-hl-cpp-100:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-fortran-102:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-hl-fortran-100:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-dev (1.10.8+repack1-1ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libfast5-dev (0.6.5-7build3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (253.5-1ubuntu7) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.41-6ubuntu1 dpkg-dev_1.22.1ubuntu1 g++-13_13.2.0-6ubuntu1 gcc-13_13.2.0-6ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13build1 autotools-dev_20220109.1 base-files_13ubuntu4 base-passwd_3.6.2 bash_5.2.15-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41-6ubuntu1 binutils-common_2.41-6ubuntu1 binutils-riscv64-linux-gnu_2.41-6ubuntu1 bsdextrautils_2.39.1-4ubuntu2 bsdutils_1:2.39.1-4ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-13_13.2.0-6ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.7ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231025 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu1 dpkg-dev_1.22.1ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-13_13.2.0-6ubuntu1 gcc_4:13.2.0-1ubuntu1 gcc-13_13.2.0-6ubuntu1 gcc-13-base_13.2.0-6ubuntu1 gettext_0.21-13build1 gettext-base_0.21-13build1 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hdf5-helpers_1.10.8+repack1-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-3ubuntu1 libacl1_2.3.1-3 libaec-dev_1.1.2-1 libaec0_1.1.2-1 libapparmor1_4.0.0~alpha2-0ubuntu6 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-6ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-6ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1build1 libaudit1_1:3.1.1-1build1 libbinutils_2.41-6ubuntu1 libblas3_3.11.0-2build1 libblkid1_2.39.1-4ubuntu2 libbrotli1_1.0.9-2build9 libbwa-dev_0.7.17-7 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-1build3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-6ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu3 libctf-nobfd0_2.41-6ubuntu1 libctf0_2.41-6ubuntu1 libcurl4_8.2.1-1ubuntu3.1 libcurl4-openssl-dev_8.2.1-1ubuntu3.1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.7ubuntu1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.1ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libexpat1_2.5.0-2 libexpat1-dev_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfast5-dev_0.6.5-7build3 libfdisk1_2.39.1-4ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-6ubuntu1 libgcc-s1_13.2.0-6ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13.2.0-6ubuntu1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu3 libgomp1_13.2.0-6ubuntu1 libgpg-error-l10n_1.47-2 libgpg-error0_1.47-2 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-3ubuntu1 libhdf5-103-1_1.10.8+repack1-1ubuntu1 libhdf5-cpp-103-1_1.10.8+repack1-1ubuntu1 libhdf5-dev_1.10.8+repack1-1ubuntu1 libhdf5-fortran-102_1.10.8+repack1-1ubuntu1 libhdf5-hl-100_1.10.8+repack1-1ubuntu1 libhdf5-hl-cpp-100_1.10.8+repack1-1ubuntu1 libhdf5-hl-fortran-100_1.10.8+repack1-1ubuntu1 libhogweed6_3.9.1-2 libicu72_72.1-3ubuntu3 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libjansson4_2.14-2 libjpeg-dev_8c-2ubuntu11 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg-turbo8-dev_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjpeg8-dev_8c-2ubuntu11 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-7 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-c5_0.17-1 libk5crypto3_1.20.1-3ubuntu1 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu3 libkrb5-3_1.20.1-3ubuntu1 libkrb5support0_1.20.1-3ubuntu1 liblapack3_3.11.0-2build1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.1-4ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnghttp2-14_1.57.0-1 libnpth0_1.6-3build2 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Crusoe Homepage: https://github.com/skovaka/UNCALLED Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/uncalled Vcs-Git: https://salsa.debian.org/med-team/uncalled.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3-all, python3-all-dev, python3-setuptools, python3-pybind11, python3-numpy, pdqsort-dev, dh-python, libbwa-dev, libhdf5-dev, pkg-config, libfast5-dev, libtoml11-dev Package-List: uncalled deb science optional arch=any Checksums-Sha1: 1f70131d17758676a4dff853f0e0e3aab41a8f33 155052 uncalled_2.3+ds.orig.tar.xz 17e8c377bba88d303a7847b14ab30a5efb4589d7 4964 uncalled_2.3+ds-1build1.debian.tar.xz Checksums-Sha256: b7ccb020555b2f547faba7a2c4e925ac28f7883c5fa3752179c59c3ab7d7b450 155052 uncalled_2.3+ds.orig.tar.xz 31b67a2415bacf386d93942c40d839b5851434ddce97d8e586ce85b6d3a61d30 4964 uncalled_2.3+ds-1build1.debian.tar.xz Files: e822e23ebeadea6b48257c626285603f 155052 uncalled_2.3+ds.orig.tar.xz 79b954827781096b2886e64a04b169da 4964 uncalled_2.3+ds-1build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAmVDaqQQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9UK/D/9vAiPzPnVN5OBwGfnJpxzWxjeHIx7JmWjN dxoPN8QGIoadyOl5CmNYaVpHwhznAhpWgWO2aIBvZiQrj2vkm7jTC34Tt5F2EB8P 4OrfZpQwLdjskjCg6V6SNs+g103CVsHaHkB/9W92iVJGgxaXoC0G4RN08kvj0c6B qWK3b43NCl+911k3FJHAMBc6jnv3Q00B8CmvS9PIVQBcD0/3O2gkuon+b7iFEKOq TTfUARg8lSLxO6ODZ4TvRx2FHCh8scEaW5RsEAMmCY5q2f1CIF1ivBSw5ynSbwz2 xRGQMXSKFjufo3XjVH70tGMsWVso/qzlenS6KJoixjgS5Tqk8Q1vJ/cMSQW/m9Ya 5VmlgDvY12jBgWeB/tgu6li5dUxS9kFHAg2NyFcs7h3lEh9UkoSgnZfYYNWvGPld rmtCFa0P7rYyuQDQ0mNW8Mu7IcdHQCFptgHeHhfAd/bQNgQTAe/AUCngtX6hq7II ypiVPIF8y+40D/soyI+sfkGW/5laKGfSpCgz7FMuuJV4+4ClT5UeENm8JjAVhS5y u0ThCalQmXM7qIxqFtGf4+LGlueqlOEUG/VaYS4nJzxey+oHmC9xybFCrx16lGkp yqWxz1QO0H7xf/mBuy7F31MtillWu6H+3OBGtiibpkAckRtvN29sCssfEt8UB+GC OO6/Y0PkdQ== =5w8D -----END PGP SIGNATURE----- gpgv: Signature made Thu Nov 2 09:23:48 2023 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./uncalled_2.3+ds-1build1.dsc: no acceptable signature found dpkg-source: info: extracting uncalled in /<> dpkg-source: info: unpacking uncalled_2.3+ds.orig.tar.xz dpkg-source: info: unpacking uncalled_2.3+ds-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_hdf5 dpkg-source: info: applying debian_bwa dpkg-source: info: applying debian_fast5 dpkg-source: info: applying debian_pybind11 dpkg-source: info: applying skip_read_until dpkg-source: info: applying debian_pdqsort dpkg-source: info: applying debian_toml11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26953895 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26953895 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26953895 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package uncalled dpkg-buildpackage: info: source version 2.3+ds-1build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if dpkg -s python3-pybind11 >/dev/null 2>/dev/null ; then \ dh_auto_clean ; \ else \ echo "skip dh_auto_clean since python3-pybind11 is not installed on your local machine" ; \ fi I: pybuild base:310: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running clean removing '/<>/.pybuild/cpython3_3.12_uncalled/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:310: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running clean removing '/<>/.pybuild/cpython3_3.11_uncalled/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:310: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running config I: pybuild base:310: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running build running build_py creating /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/__init__.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/minknow_client.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/args.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/index.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/pafstats.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/debug.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled copying uncalled/sim_utils.py -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled running egg_info creating uncalled.egg-info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing requirements to uncalled.egg-info/requires.txt writing top-level names to uncalled.egg-info/top_level.txt writing manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE' writing manifest file 'uncalled.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'uncalled.conf' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'uncalled.conf' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'uncalled.conf' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'uncalled.conf' to be distributed and are already explicitly excluding 'uncalled.conf' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf copying uncalled/conf/defaults.toml -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers.txt -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers_threshs.txt -> /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf running build_ext All submodules present Found libbwa.a Found libhdf5.a building '_uncalled' extension creating build creating build/temp.linux-riscv64-cpython-312 creating build/temp.linux-riscv64-cpython-312/src riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/chunk.cpp -o build/temp.linux-riscv64-cpython-312/src/chunk.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/client_sim.cpp -o build/temp.linux-riscv64-cpython-312/src/client_sim.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/event_detector.cpp -o build/temp.linux-riscv64-cpython-312/src/event_detector.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/event_profiler.cpp -o build/temp.linux-riscv64-cpython-312/src/event_profiler.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/fast5_reader.cpp -o build/temp.linux-riscv64-cpython-312/src/fast5_reader.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/map_pool.cpp -o build/temp.linux-riscv64-cpython-312/src/map_pool.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/mapper.cpp -o build/temp.linux-riscv64-cpython-312/src/mapper.o -std=c++11 -O3 src/mapper.cpp: In member function ‘void Mapper::update_seeds(PathBuffer&, bool)’: src/mapper.cpp:681:13: warning: unused variable ‘sa_start’ [-Wunused-variable] 681 | u64 sa_start = sa_end - ref_len + 1; | ^~~~~~~~ src/mapper.cpp:684:14: warning: variable ‘clust’ set but not used [-Wunused-but-set-variable] 684 | auto clust = seed_tracker_.add_seed( | ^~~~~ src/mapper.cpp: In copy constructor ‘Mapper::PathBuffer::PathBuffer(const Mapper::PathBuffer&)’: src/mapper.cpp:744:16: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Mapper::PathBuffer’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 744 | std::memcpy(this, &p, sizeof(PathBuffer)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mapper.cpp:26: src/mapper.hpp:139:11: note: ‘class Mapper::PathBuffer’ declared here 139 | class PathBuffer { | ^~~~~~~~~~ riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/normalizer.cpp -o build/temp.linux-riscv64-cpython-312/src/normalizer.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/pybinder.cpp -o build/temp.linux-riscv64-cpython-312/src/pybinder.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/range.cpp -o build/temp.linux-riscv64-cpython-312/src/range.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/read_buffer.cpp -o build/temp.linux-riscv64-cpython-312/src/read_buffer.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/realtime_pool.cpp -o build/temp.linux-riscv64-cpython-312/src/realtime_pool.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/seed_tracker.cpp -o build/temp.linux-riscv64-cpython-312/src/seed_tracker.o -std=c++11 -O3 riscv64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.12 -c src/self_align_ref.cpp -o build/temp.linux-riscv64-cpython-312/src/self_align_ref.o -std=c++11 -O3 riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-312/src/chunk.o build/temp.linux-riscv64-cpython-312/src/client_sim.o build/temp.linux-riscv64-cpython-312/src/event_detector.o build/temp.linux-riscv64-cpython-312/src/event_profiler.o build/temp.linux-riscv64-cpython-312/src/fast5_reader.o build/temp.linux-riscv64-cpython-312/src/map_pool.o build/temp.linux-riscv64-cpython-312/src/mapper.o build/temp.linux-riscv64-cpython-312/src/normalizer.o build/temp.linux-riscv64-cpython-312/src/pybinder.o build/temp.linux-riscv64-cpython-312/src/range.o build/temp.linux-riscv64-cpython-312/src/read_buffer.o build/temp.linux-riscv64-cpython-312/src/realtime_pool.o build/temp.linux-riscv64-cpython-312/src/seed_tracker.o build/temp.linux-riscv64-cpython-312/src/self_align_ref.o -L/usr/lib/riscv64-linux-gnu/hdf5/serial -L/usr/lib/riscv64-linux-gnu -lbwa -lhdf5 -lz -ldl -lm -o /<>/.pybuild/cpython3_3.12_uncalled/build/_uncalled.cpython-312-riscv64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/uncalled -> build/scripts-3.12 changing mode of build/scripts-3.12/uncalled from 644 to 755 I: pybuild base:310: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running build running build_py creating /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/__init__.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/minknow_client.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/args.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/index.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/pafstats.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/debug.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled copying uncalled/sim_utils.py -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled running egg_info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing requirements to uncalled.egg-info/requires.txt writing top-level names to uncalled.egg-info/top_level.txt reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE' writing manifest file 'uncalled.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'uncalled.conf' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'uncalled.conf' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'uncalled.conf' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'uncalled.conf' to be distributed and are already explicitly excluding 'uncalled.conf' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf copying uncalled/conf/defaults.toml -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers.txt -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers_threshs.txt -> /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf running build_ext All submodules present Found libbwa.a Found libhdf5.a building '_uncalled' extension creating build/temp.linux-riscv64-cpython-311 creating build/temp.linux-riscv64-cpython-311/src riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/chunk.cpp -o build/temp.linux-riscv64-cpython-311/src/chunk.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/client_sim.cpp -o build/temp.linux-riscv64-cpython-311/src/client_sim.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/event_detector.cpp -o build/temp.linux-riscv64-cpython-311/src/event_detector.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/event_profiler.cpp -o build/temp.linux-riscv64-cpython-311/src/event_profiler.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/fast5_reader.cpp -o build/temp.linux-riscv64-cpython-311/src/fast5_reader.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/map_pool.cpp -o build/temp.linux-riscv64-cpython-311/src/map_pool.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/mapper.cpp -o build/temp.linux-riscv64-cpython-311/src/mapper.o -std=c++11 -O3 src/mapper.cpp: In member function ‘void Mapper::update_seeds(PathBuffer&, bool)’: src/mapper.cpp:681:13: warning: unused variable ‘sa_start’ [-Wunused-variable] 681 | u64 sa_start = sa_end - ref_len + 1; | ^~~~~~~~ src/mapper.cpp:684:14: warning: variable ‘clust’ set but not used [-Wunused-but-set-variable] 684 | auto clust = seed_tracker_.add_seed( | ^~~~~ src/mapper.cpp: In copy constructor ‘Mapper::PathBuffer::PathBuffer(const Mapper::PathBuffer&)’: src/mapper.cpp:744:16: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Mapper::PathBuffer’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 744 | std::memcpy(this, &p, sizeof(PathBuffer)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mapper.cpp:26: src/mapper.hpp:139:11: note: ‘class Mapper::PathBuffer’ declared here 139 | class PathBuffer { | ^~~~~~~~~~ riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/normalizer.cpp -o build/temp.linux-riscv64-cpython-311/src/normalizer.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/pybinder.cpp -o build/temp.linux-riscv64-cpython-311/src/pybinder.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/range.cpp -o build/temp.linux-riscv64-cpython-311/src/range.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/read_buffer.cpp -o build/temp.linux-riscv64-cpython-311/src/read_buffer.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/realtime_pool.cpp -o build/temp.linux-riscv64-cpython-311/src/realtime_pool.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/seed_tracker.cpp -o build/temp.linux-riscv64-cpython-311/src/seed_tracker.o -std=c++11 -O3 riscv64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.11 -c src/self_align_ref.cpp -o build/temp.linux-riscv64-cpython-311/src/self_align_ref.o -std=c++11 -O3 riscv64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-311/src/chunk.o build/temp.linux-riscv64-cpython-311/src/client_sim.o build/temp.linux-riscv64-cpython-311/src/event_detector.o build/temp.linux-riscv64-cpython-311/src/event_profiler.o build/temp.linux-riscv64-cpython-311/src/fast5_reader.o build/temp.linux-riscv64-cpython-311/src/map_pool.o build/temp.linux-riscv64-cpython-311/src/mapper.o build/temp.linux-riscv64-cpython-311/src/normalizer.o build/temp.linux-riscv64-cpython-311/src/pybinder.o build/temp.linux-riscv64-cpython-311/src/range.o build/temp.linux-riscv64-cpython-311/src/read_buffer.o build/temp.linux-riscv64-cpython-311/src/realtime_pool.o build/temp.linux-riscv64-cpython-311/src/seed_tracker.o build/temp.linux-riscv64-cpython-311/src/self_align_ref.o -L/usr/lib/riscv64-linux-gnu/hdf5/serial -L/usr/lib/riscv64-linux-gnu -lbwa -lhdf5 -lz -ldl -lm -o /<>/.pybuild/cpython3_3.11_uncalled/build/_uncalled.cpython-311-riscv64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting scripts/uncalled -> build/scripts-3.11 changing mode of build/scripts-3.11/uncalled from 644 to 755 dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/uncalled/ -a -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py install --root /<>/debian/uncalled /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing requirements to uncalled.egg-info/requires.txt writing top-level names to uncalled.egg-info/top_level.txt reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE' writing manifest file 'uncalled.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'uncalled.conf' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'uncalled.conf' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'uncalled.conf' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'uncalled.conf' to be distributed and are already explicitly excluding 'uncalled.conf' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext All submodules present Found libbwa.a Found libhdf5.a running build_scripts running install_lib creating /<>/debian/uncalled/usr creating /<>/debian/uncalled/usr/lib creating /<>/debian/uncalled/usr/lib/python3.12 creating /<>/debian/uncalled/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12_uncalled/build/_uncalled.cpython-312-riscv64-linux-gnu.so -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages creating /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/__init__.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/minknow_client.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/args.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/index.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/pafstats.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/debug.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled creating /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf/r94_5mers.txt -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf/r94_5mers_threshs.txt -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/conf/defaults.toml -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.12_uncalled/build/uncalled/sim_utils.py -> /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/minknow_client.py to minknow_client.cpython-312.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/args.py to args.cpython-312.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/index.py to index.cpython-312.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/pafstats.py to pafstats.cpython-312.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/debug.py to debug.cpython-312.pyc /usr/lib/python3.12/dist-packages/uncalled/debug.py:23: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled/sim_utils.py to sim_utils.cpython-312.pyc running install_egg_info Copying uncalled.egg-info to /<>/debian/uncalled/usr/lib/python3.12/dist-packages/uncalled-2.3.0.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/uncalled/usr/bin copying build/scripts-3.12/uncalled -> /<>/debian/uncalled/usr/bin changing mode of /<>/debian/uncalled/usr/bin/uncalled to 755 I: pybuild base:310: /usr/bin/python3 setup.py install --root /<>/debian/uncalled /usr/lib/python3/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing requirements to uncalled.egg-info/requires.txt writing top-level names to uncalled.egg-info/top_level.txt reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE' writing manifest file 'uncalled.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'uncalled.conf' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'uncalled.conf' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'uncalled.conf' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'uncalled.conf' to be distributed and are already explicitly excluding 'uncalled.conf' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext All submodules present Found libbwa.a Found libhdf5.a running build_scripts running install_lib creating /<>/debian/uncalled/usr/lib/python3.11 creating /<>/debian/uncalled/usr/lib/python3.11/dist-packages creating /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/__init__.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/minknow_client.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/args.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/index.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/pafstats.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/debug.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled creating /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf/r94_5mers.txt -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf/r94_5mers_threshs.txt -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/conf/defaults.toml -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/conf copying /<>/.pybuild/cpython3_3.11_uncalled/build/uncalled/sim_utils.py -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled copying /<>/.pybuild/cpython3_3.11_uncalled/build/_uncalled.cpython-311-riscv64-linux-gnu.so -> /<>/debian/uncalled/usr/lib/python3.11/dist-packages byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/minknow_client.py to minknow_client.cpython-311.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/args.py to args.cpython-311.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/index.py to index.cpython-311.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/pafstats.py to pafstats.cpython-311.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/debug.py to debug.cpython-311.pyc byte-compiling /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled/sim_utils.py to sim_utils.cpython-311.pyc running install_egg_info Copying uncalled.egg-info to /<>/debian/uncalled/usr/lib/python3.11/dist-packages/uncalled-2.3.0.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.11/uncalled -> /<>/debian/uncalled/usr/bin changing mode of /<>/debian/uncalled/usr/bin/uncalled to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides minknow_api. Please add package that provides it to Build-Depends or add "minknow_api python3-minknow-api" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/uncalled/usr/lib/python3/dist-packages/_uncalled.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 70f6ed183b105289e13d636b3e41a6132d419feb debugedit: debian/uncalled/usr/lib/python3/dist-packages/_uncalled.cpython-311-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0954f21c701369065764a5f7ef7861ed84dd1abb dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing uncalled (in debian/uncalled); do_strip: , oemstrip: pkgstriptranslations: processing uncalled-dbgsym (in debian/.debhelper/uncalled/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/uncalled/DEBIAN/control, package uncalled, directory debian/uncalled pkgstripfiles: processing control file: debian/.debhelper/uncalled/dbgsym-root/DEBIAN/control, package uncalled-dbgsym, directory debian/.debhelper/uncalled/dbgsym-root dpkg-deb: building package 'uncalled-dbgsym' in 'debian/.debhelper/scratch-space/build-uncalled/uncalled-dbgsym_2.3+ds-1build1_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package uncalled ... pkgstripfiles: No PNG files. dpkg-deb: building package 'uncalled' in '../uncalled_2.3+ds-1build1_riscv64.deb'. Renaming uncalled-dbgsym_2.3+ds-1build1_riscv64.deb to uncalled-dbgsym_2.3+ds-1build1_riscv64.ddeb dpkg-genbuildinfo --build=any -O../uncalled_2.3+ds-1build1_riscv64.buildinfo Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in string eq at /usr/bin/dpkg-genbuildinfo line 336. dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../uncalled_2.3+ds-1build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-11-02T23:13:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ uncalled_2.3+ds-1build1_riscv64.changes: ---------------------------------------- Format: 1.8 Date: Thu, 02 Nov 2023 10:07:16 +0100 Source: uncalled Binary: uncalled Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.3+ds-1build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: uncalled - Utility for Nanopore Current Alignment to Large Expanses of DNA Changes: uncalled (2.3+ds-1build1) noble; urgency=medium . * No-change rebuild to build with python3.12 as supported. 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renamed to /<>/uncalled_2.3+ds-1build1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: uncalled Binary: uncalled uncalled-dbgsym Architecture: riscv64 Version: 2.3+ds-1build1 Checksums-Md5: fac0a799713e0a92c69f3fa6c5eaca50 16330752 uncalled-dbgsym_2.3+ds-1build1_riscv64.ddeb 98b09a3ff183b40b981a7c2ac5dfce23 864894 uncalled_2.3+ds-1build1_riscv64.deb Checksums-Sha1: c198aa0f98c2ac2b72f40c6afb06b5679d05069f 16330752 uncalled-dbgsym_2.3+ds-1build1_riscv64.ddeb 0bcde279bc726d2522c13ca244f8d123a42f70d9 864894 uncalled_2.3+ds-1build1_riscv64.deb Checksums-Sha256: 98e9d329b439e1d5a515042c8a8e3a574199c31d0c88af230b07ee5284152f75 16330752 uncalled-dbgsym_2.3+ds-1build1_riscv64.ddeb 68928e55186a6d37a39a92bafc7a6890dfb9777e5c252b639cf489ac96b85563 864894 uncalled_2.3+ds-1build1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Thu, 02 Nov 2023 23:13:26 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13build1), autotools-dev (= 20220109.1), base-files (= 13ubuntu4), base-passwd (= 3.6.2), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-6ubuntu1), binutils-common (= 2.41-6ubuntu1), binutils-riscv64-linux-gnu (= 2.41-6ubuntu1), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-6ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231025), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu1), dpkg-dev (= 1.22.1ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-6ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-6ubuntu1), gcc-13-base (= 13.2.0-6ubuntu1), gettext (= 0.21-13build1), gettext-base (= 0.21-13build1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hdf5-helpers (= 1.10.8+repack1-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libaec-dev (= 1.1.2-1), libaec0 (= 1.1.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6ubuntu1), libatomic1 (= 13.2.0-6ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1build1), libaudit1 (= 1:3.1.1-1build1), libbinutils (= 2.41-6ubuntu1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.1-4ubuntu2), libbrotli1 (= 1.0.9-2build9), libbwa-dev (= 0.7.17-7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-1build3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-6ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-6ubuntu1), libctf0 (= 2.41-6ubuntu1), libcurl4 (= 8.2.1-1ubuntu3.1), libcurl4-openssl-dev (= 8.2.1-1ubuntu3.1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdpkg-perl (= 1.22.1ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libexpat1-dev (= 2.5.0-2), libfast5-dev (= 0.6.5-7build3), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-6ubuntu1), libgcc-s1 (= 13.2.0-6ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 13.2.0-6ubuntu1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu3), libgomp1 (= 13.2.0-6ubuntu1), libgpg-error0 (= 1.47-2), libgssapi-krb5-2 (= 1.20.1-3ubuntu1), libhdf5-103-1 (= 1.10.8+repack1-1ubuntu1), libhdf5-cpp-103-1 (= 1.10.8+repack1-1ubuntu1), libhdf5-dev (= 1.10.8+repack1-1ubuntu1), libhdf5-fortran-102 (= 1.10.8+repack1-1ubuntu1), libhdf5-hl-100 (= 1.10.8+repack1-1ubuntu1), libhdf5-hl-cpp-100 (= 1.10.8+repack1-1ubuntu1), libhdf5-hl-fortran-100 (= 1.10.8+repack1-1ubuntu1), libhogweed6 (= 3.9.1-2), libicu72 (= 72.1-3ubuntu3), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 5.3.0-7), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.20.1-3ubuntu1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3ubuntu1), libkrb5support0 (= 1.20.1-3ubuntu1), liblapack3 (= 3.11.0-2build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-4ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231016-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.57.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libp11-kit0 (= 0.25.0-4ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-9ubuntu1), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-2), libpsl5 (= 0.21.2-1build1), libpython3-all-dev (= 3.11.4-5ubuntu1), libpython3-dev (= 3.11.4-5ubuntu1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11 (= 3.11.6-3), libpython3.11-dev (= 3.11.6-3), libpython3.11-minimal (= 3.11.6-3), libpython3.11-stdlib (= 3.11.6-3), libpython3.12 (= 3.12.0-1), libpython3.12-dev (= 3.12.0-1), libpython3.12-minimal (= 3.12.0-1), libpython3.12-stdlib (= 3.12.0-1), libreadline8 (= 8.2-1.3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libselinux1 (= 3.5-1build1), libsframe1 (= 2.41-6ubuntu1), libsmartcols1 (= 2.39.1-4ubuntu2), libsqlite3-0 (= 3.43.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl-dev (= 3.0.10-1ubuntu2.1), libssl3 (= 3.0.10-1ubuntu2.1), libstdc++-13-dev (= 13.2.0-6ubuntu1), libstdc++6 (= 13.2.0-6ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu7), libsz2 (= 1.1.2-1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtoml11-dev (= 3.7.1-3), libtool (= 2.4.7-7), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring5 (= 1.1-2), libuuid1 (= 2.39.1-4ubuntu2), libxml2 (= 2.9.14+dfsg-1.3build1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), patch (= 2.7.6-7build2), pdqsort-dev (= 0.0.0+git20180419-2.1), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), pybind11-dev (= 2.11.1-1), python3 (= 3.11.4-5ubuntu1), python3-all (= 3.11.4-5ubuntu1), python3-all-dev (= 3.11.4-5ubuntu1), python3-dev (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.11.4-5ubuntu1), python3-numpy (= 1:1.24.2-1ubuntu1), python3-pkg-resources (= 68.1.2-2), python3-pybind11 (= 2.11.1-1), python3-setuptools (= 68.1.2-2), python3.11 (= 3.11.6-3), python3.11-dev (= 3.11.6-3), python3.11-minimal (= 3.11.6-3), python3.12 (= 3.12.0-1), python3.12-dev (= 3.12.0-1), python3.12-minimal (= 3.12.0-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), util-linux (= 2.39.1-4ubuntu2), xz-utils (= 5.4.4-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" DEB_GCJFLAGS_SET="-fdebug-prefix-map=/<>=/usr/src/uncalled-2.3+ds-1build1" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1698916036" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ uncalled_2.3+ds-1build1_riscv64.deb ----------------------------------- new Debian package, version 2.0. size 864894 bytes: control archive=2055 bytes. 820 bytes, 17 lines control 2776 bytes, 31 lines md5sums 267 bytes, 12 lines * postinst #!/bin/sh 380 bytes, 12 lines * prerm #!/bin/sh Package: uncalled Version: 2.3+ds-1build1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2842 Depends: python3 (<< 3.13), python3 (>= 3.11~), python3:any, libc6 (>= 2.38), libgcc-s1 (>= 3.4), libhdf5-103-1, libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), python3-numpy Section: science Priority: optional Homepage: https://github.com/skovaka/UNCALLED Description: Utility for Nanopore Current Alignment to Large Expanses of DNA Streaming algorithm for mapping raw nanopore signal to DNA references . Enables real-time enrichment or depletion on Oxford Nanopore Technologies (ONT) MinION runs via ReadUntil. . Also supports standalone signal mapping of fast5 reads drwxr-xr-x root/root 0 2023-11-02 09:07 ./ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/bin/ -rwxr-xr-x root/root 10955 2023-11-02 09:07 ./usr/bin/uncalled drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 1296072 2023-11-02 09:07 ./usr/lib/python3/dist-packages/_uncalled.cpython-311-riscv64-linux-gnu.so -rw-r--r-- root/root 1300160 2023-11-02 09:07 ./usr/lib/python3/dist-packages/_uncalled.cpython-312-riscv64-linux-gnu.so drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled-2.3.0.egg-info/ -rw-r--r-- root/root 303 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled-2.3.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled-2.3.0.egg-info/dependency_links.txt -rw-r--r-- root/root 17 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled-2.3.0.egg-info/requires.txt -rw-r--r-- root/root 19 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled-2.3.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled/ -rw-r--r-- root/root 101 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/__init__.py -rw-r--r-- root/root 10502 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/args.py drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/lib/python3/dist-packages/uncalled/conf/ -rw-r--r-- root/root 1192 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/conf/defaults.toml -rw-r--r-- root/root 25896 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/conf/r94_5mers.txt -rw-r--r-- root/root 87137 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/conf/r94_5mers_threshs.txt -rw-r--r-- root/root 18985 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/debug.py -rw-r--r-- root/root 7343 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/index.py -rw-r--r-- root/root 7451 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/minknow_client.py -rw-r--r-- root/root 7630 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/pafstats.py -rw-r--r-- root/root 13111 2023-06-09 13:17 ./usr/lib/python3/dist-packages/uncalled/sim_utils.py drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/share/ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/share/doc/uncalled/ -rw-r--r-- root/root 786 2023-11-02 09:07 ./usr/share/doc/uncalled/changelog.Debian.gz -rw-r--r-- root/root 1544 2023-07-14 05:55 ./usr/share/doc/uncalled/copyright drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/share/doc/uncalled/examples/ -rw-r--r-- root/root 53145 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/GXB01153_20180730_FAH86930_GA30000_mux_scan_Zymo_CS_LSK109_29137_read_101_ch_486_strand.fast5 -rw-r--r-- root/root 984 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/README.md -rw-r--r-- root/root 10170 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/example_ref.fa -rw-r--r-- root/root 94 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/fast5_filename.txt drwxr-xr-x root/root 0 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/ -rw-r--r-- root/root 10 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/example_ref.amb -rw-r--r-- root/root 74 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/example_ref.ann -rw-r--r-- root/root 10096 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/example_ref.bwt -rw-r--r-- root/root 2502 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/example_ref.pac -rw-r--r-- root/root 5056 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/example_ref.sa -rw-r--r-- root/root 130 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/index/example_ref.uncl -rwxr-xr-x root/root 343 2023-06-09 13:17 ./usr/share/doc/uncalled/examples/run_example.sh drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-11-02 09:07 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 118 2023-07-14 05:55 ./usr/share/lintian/overrides/uncalled +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 473864 Build-Time: 9126 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 507 Job: uncalled_2.3+ds-1build1.dsc Machine Architecture: riscv64 Package: uncalled Package-Time: 9657 Source-Version: 2.3+ds-1build1 Space: 473864 Status: successful Version: 2.3+ds-1build1 -------------------------------------------------------------------------------- Finished at 2023-11-02T23:13:36Z Build needed 02:40:57, 473864k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 Scanning for processes to kill in build PACKAGEBUILD-26953895 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 Stopping target for build PACKAGEBUILD-26953895 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26953895 Removing build PACKAGEBUILD-26953895