https://launchpad.net/ubuntu/+source/unifrac-tools/1.1.1-4/+build/24626277 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-010 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:01:44 UTC 2022 s390x Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 22 Nov 16:05:27 ntpdate[1788]: adjust time server 10.211.37.1 offset 0.003856 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626277 --image-type chroot /home/buildd/filecache-default/d69c6a9a1a76dcbacf33b6b89949d8be19eeaabf Creating target for build PACKAGEBUILD-24626277 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626277 Starting target for build PACKAGEBUILD-24626277 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626277 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24626277 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626277 Updating target for build PACKAGEBUILD-24626277 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [251 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x Packages [1316 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/universe s390x Packages [13.9 MB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5834 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x Packages [320 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [132 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x Packages [1899 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [830 kB] Fetched 24.7 MB in 4s (5824 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt binutils binutils-common binutils-s390x-linux-gnu debianutils e2fsprogs fakeroot gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libassuan0 libaudit-common libaudit1 libbinutils libcap-ng0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libext2fs2 libfakeroot libffi8 libgpg-error0 libgssapi-krb5-2 libip4tc2 libjson-c5 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libreadline8 libseccomp2 libselinux1 libsqlite3-0 libss2 libssl3 linux-libc-dev logsave openssl perl perl-base pinentry-curses readline-common tar usrmerge xz-utils zlib1g 60 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 24.4 MB of archives. After this operation, 46.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x debianutils s390x 5.7-0.4 [103 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x grep s390x 3.8-3 [159 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libperl5.36 s390x 5.36.0-4ubuntu2 [4738 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl s390x 5.36.0-4ubuntu2 [235 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl-base s390x 5.36.0-4ubuntu2 [1713 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcrypt-dev s390x 1:4.4.33-1 [113 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcrypt1 s390x 1:4.4.33-1 [82.2 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x zlib1g s390x 1:1.2.13.dfsg-1ubuntu2 [64.6 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x tar s390x 1.34+dfsg-1.1 [289 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x usrmerge all 33ubuntu1 [57.0 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x init-system-helpers all 1.65.2 [38.1 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblz4-1 s390x 1.9.4-1 [59.9 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblzma5 s390x 5.2.7-0.1 [102 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libapt-pkg6.0 s390x 2.5.4 [867 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgpg-error0 s390x 1.46-1 [68.2 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpgv s390x 2.2.40-1ubuntu1 [134 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libseccomp2 s390x 2.5.4-1ubuntu2 [46.3 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x apt s390x 2.5.4 [1351 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcap-ng0 s390x 0.8.3-1build1 [15.0 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libaudit1 s390x 1:3.0.7-1ubuntu2 [45.4 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpam0g s390x 1.5.2-5ubuntu1 [59.1 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libselinux1 s390x 3.4-1build1 [76.9 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpam-modules-bin s390x 1.5.2-5ubuntu1 [46.8 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpam-modules s390x 1.5.2-5ubuntu1 [278 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x logsave s390x 1.46.6~rc1-1ubuntu1 [10.4 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libext2fs2 s390x 1.46.6~rc1-1ubuntu1 [207 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x e2fsprogs s390x 1.46.6~rc1-1ubuntu1 [580 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x init s390x 1.65.2 [4810 B] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpam-runtime all 1.5.2-5ubuntu1 [40.0 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libffi8 s390x 3.4.4-1 [21.0 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcom-err2 s390x 1.46.6~rc1-1ubuntu1 [9606 B] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libss2 s390x 1.46.6~rc1-1ubuntu1 [12.0 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libapparmor1 s390x 3.0.7-1ubuntu3 [36.7 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libjson-c5 s390x 0.16-2 [32.4 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libssl3 s390x 3.0.5-2ubuntu2 [1565 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcryptsetup12 s390x 2:2.5.0-6ubuntu1 [209 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgssapi-krb5-2 s390x 1.20.1-1 [136 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libkrb5-3 s390x 1.20.1-1 [339 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libkrb5support0 s390x 1.20.1-1 [31.5 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libk5crypto3 s390x 1.20.1-1 [82.6 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libip4tc2 s390x 1.8.7-1ubuntu7 [19.2 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x readline-common all 8.2-1.2 [55.2 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libreadline8 s390x 8.2-1.2 [151 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsqlite3-0 s390x 3.40.0-1 [642 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x openssl s390x 3.0.5-2ubuntu2 [1164 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x xz-utils s390x 5.2.7-0.1 [141 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libctf-nobfd0 s390x 2.39-8ubuntu2 [94.4 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libctf0 s390x 2.39-8ubuntu2 [94.0 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils-s390x-linux-gnu s390x 2.39-8ubuntu2 [2047 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libbinutils s390x 2.39-8ubuntu2 [419 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils s390x 2.39-8ubuntu2 [3102 B] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils-common s390x 2.39-8ubuntu2 [223 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libfakeroot s390x 1.30.1-1ubuntu1 [30.0 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x fakeroot s390x 1.30.1-1ubuntu1 [59.6 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libassuan0 s390x 2.5.5-5 [35.0 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x pinentry-curses s390x 1.2.1-1ubuntu1 [34.8 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpg s390x 2.2.40-1ubuntu1 [508 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpgconf s390x 2.2.40-1ubuntu1 [94.9 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gpg-agent s390x 2.2.40-1ubuntu1 [213 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x linux-libc-dev s390x 5.19.0-23.24 [1339 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.4 MB in 3s (8223 kB/s) (Reading database ... 13338 files and directories currently installed.) Preparing to unpack .../debianutils_5.7-0.4_s390x.deb ... Unpacking debianutils (5.7-0.4) over (5.7-0.3) ... Setting up debianutils (5.7-0.4) ... (Reading database ... 13338 files and directories currently installed.) Preparing to unpack .../archives/grep_3.8-3_s390x.deb ... Unpacking grep (3.8-3) over (3.7-1build1) ... Setting up grep (3.8-3) ... (Reading database ... 13338 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-4ubuntu2_s390x.deb ... Unpacking perl (5.36.0-4ubuntu2) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../perl-modules-5.36_5.36.0-4ubuntu2_all.deb ... Unpacking perl-modules-5.36 (5.36.0-4ubuntu2) ... Selecting previously unselected package libperl5.36:s390x. Preparing to unpack .../libperl5.36_5.36.0-4ubuntu2_s390x.deb ... Unpacking libperl5.36:s390x (5.36.0-4ubuntu2) ... Preparing to unpack .../perl-base_5.36.0-4ubuntu2_s390x.deb ... Unpacking perl-base (5.36.0-4ubuntu2) over (5.34.0-5ubuntu1) ... Setting up perl-base (5.36.0-4ubuntu2) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.33-1_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.33-1) over (1:4.4.28-2) ... Preparing to unpack .../libcrypt1_1%3a4.4.33-1_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.33-1) over (1:4.4.28-2) ... Setting up libcrypt1:s390x (1:4.4.33-1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu2_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.13.dfsg-1ubuntu2) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:s390x (1:1.2.13.dfsg-1ubuntu2) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.1_s390x.deb ... Unpacking tar (1.34+dfsg-1.1) over (1.34+dfsg-1build3) ... Setting up tar (1.34+dfsg-1.1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../usrmerge_33ubuntu1_all.deb ... Unpacking usrmerge (33ubuntu1) over (29ubuntu2) ... Setting up usrmerge (33ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2_all.deb ... Unpacking init-system-helpers (1.65.2) over (1.64) ... Setting up init-system-helpers (1.65.2) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1_s390x.deb ... Unpacking liblz4-1:s390x (1.9.4-1) over (1.9.3-2build2) ... Setting up liblz4-1:s390x (1.9.4-1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.7-0.1_s390x.deb ... Unpacking liblzma5:s390x (5.2.7-0.1) over (5.2.5-2.1) ... Setting up liblzma5:s390x (5.2.7-0.1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.4_s390x.deb ... Unpacking libapt-pkg6.0:s390x (2.5.4) over (2.5.3) ... Setting up libapt-pkg6.0:s390x (2.5.4) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.46-1_s390x.deb ... Unpacking libgpg-error0:s390x (1.46-1) over (1.45-2) ... Setting up libgpg-error0:s390x (1.46-1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1ubuntu1_s390x.deb ... Unpacking gpgv (2.2.40-1ubuntu1) over (2.2.35-3ubuntu1) ... Setting up gpgv (2.2.40-1ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1ubuntu2_s390x.deb ... Unpacking libseccomp2:s390x (2.5.4-1ubuntu2) over (2.5.4-1ubuntu1) ... Setting up libseccomp2:s390x (2.5.4-1ubuntu2) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.4_s390x.deb ... Unpacking apt (2.5.4) over (2.5.3) ... Setting up apt (2.5.4) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.0.7-1ubuntu2_all.deb ... Unpacking libaudit-common (1:3.0.7-1ubuntu2) over (1:3.0.7-1ubuntu1) ... Setting up libaudit-common (1:3.0.7-1ubuntu2) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1build1_s390x.deb ... Unpacking libcap-ng0:s390x (0.8.3-1build1) over (0.8.3-1) ... Setting up libcap-ng0:s390x (0.8.3-1build1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.7-1ubuntu2_s390x.deb ... Unpacking libaudit1:s390x (1:3.0.7-1ubuntu2) over (1:3.0.7-1ubuntu1) ... Setting up libaudit1:s390x (1:3.0.7-1ubuntu2) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-5ubuntu1_s390x.deb ... Unpacking libpam0g:s390x (1.5.2-5ubuntu1) over (1.5.2-2ubuntu1) ... Setting up libpam0g:s390x (1.5.2-5ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1build1_s390x.deb ... Unpacking libselinux1:s390x (3.4-1build1) over (3.4-1) ... Setting up libselinux1:s390x (3.4-1build1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-5ubuntu1_s390x.deb ... Unpacking libpam-modules-bin (1.5.2-5ubuntu1) over (1.5.2-2ubuntu1) ... Replacing files in old package libpam-modules:s390x (1.5.2-2ubuntu1) ... Setting up libpam-modules-bin (1.5.2-5ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-5ubuntu1_s390x.deb ... Unpacking libpam-modules:s390x (1.5.2-5ubuntu1) over (1.5.2-2ubuntu1) ... Setting up libpam-modules:s390x (1.5.2-5ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../logsave_1.46.6~rc1-1ubuntu1_s390x.deb ... Unpacking logsave (1.46.6~rc1-1ubuntu1) over (1.46.5-2ubuntu2) ... Preparing to unpack .../libext2fs2_1.46.6~rc1-1ubuntu1_s390x.deb ... Unpacking libext2fs2:s390x (1.46.6~rc1-1ubuntu1) over (1.46.5-2ubuntu2) ... Setting up libext2fs2:s390x (1.46.6~rc1-1ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.6~rc1-1ubuntu1_s390x.deb ... Unpacking e2fsprogs (1.46.6~rc1-1ubuntu1) over (1.46.5-2ubuntu2) ... Preparing to unpack .../archives/init_1.65.2_s390x.deb ... Unpacking init (1.65.2) over (1.64) ... Preparing to unpack .../libpam-runtime_1.5.2-5ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-5ubuntu1) over (1.5.2-2ubuntu1) ... Setting up libpam-runtime (1.5.2-5ubuntu1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-1_s390x.deb ... Unpacking libffi8:s390x (3.4.4-1) over (3.4.2-4) ... Setting up libffi8:s390x (3.4.4-1) ... (Reading database ... 15262 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.46.6~rc1-1ubuntu1_s390x.deb ... Unpacking libcom-err2:s390x (1.46.6~rc1-1ubuntu1) over (1.46.5-2ubuntu2) ... Preparing to unpack .../01-libss2_1.46.6~rc1-1ubuntu1_s390x.deb ... Unpacking libss2:s390x (1.46.6~rc1-1ubuntu1) over (1.46.5-2ubuntu2) ... Preparing to unpack .../02-libapparmor1_3.0.7-1ubuntu3_s390x.deb ... Unpacking libapparmor1:s390x (3.0.7-1ubuntu3) over (3.0.7-1ubuntu2) ... Preparing to unpack .../03-libjson-c5_0.16-2_s390x.deb ... Unpacking libjson-c5:s390x (0.16-2) over (0.16-1) ... Preparing to unpack .../04-libssl3_3.0.5-2ubuntu2_s390x.deb ... Unpacking libssl3:s390x (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../05-libcryptsetup12_2%3a2.5.0-6ubuntu1_s390x.deb ... Unpacking libcryptsetup12:s390x (2:2.5.0-6ubuntu1) over (2:2.5.0-2ubuntu1) ... Preparing to unpack .../06-libgssapi-krb5-2_1.20.1-1_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.20.1-1) over (1.20-1) ... Preparing to unpack .../07-libkrb5-3_1.20.1-1_s390x.deb ... Unpacking libkrb5-3:s390x (1.20.1-1) over (1.20-1) ... Preparing to unpack .../08-libkrb5support0_1.20.1-1_s390x.deb ... Unpacking libkrb5support0:s390x (1.20.1-1) over (1.20-1) ... Preparing to unpack .../09-libk5crypto3_1.20.1-1_s390x.deb ... Unpacking libk5crypto3:s390x (1.20.1-1) over (1.20-1) ... Preparing to unpack .../10-libip4tc2_1.8.7-1ubuntu7_s390x.deb ... Unpacking libip4tc2:s390x (1.8.7-1ubuntu7) over (1.8.7-1ubuntu6) ... Preparing to unpack .../11-readline-common_8.2-1.2_all.deb ... Unpacking readline-common (8.2-1.2) over (8.2-1) ... Preparing to unpack .../12-libreadline8_8.2-1.2_s390x.deb ... Unpacking libreadline8:s390x (8.2-1.2) over (8.2-1) ... Preparing to unpack .../13-libsqlite3-0_3.40.0-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.40.0-1) over (3.39.3-1) ... Preparing to unpack .../14-openssl_3.0.5-2ubuntu2_s390x.deb ... Unpacking openssl (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../15-xz-utils_5.2.7-0.1_s390x.deb ... Unpacking xz-utils (5.2.7-0.1) over (5.2.5-2.1) ... Preparing to unpack .../16-libctf-nobfd0_2.39-8ubuntu2_s390x.deb ... Unpacking libctf-nobfd0:s390x (2.39-8ubuntu2) over (2.39-3ubuntu1) ... Preparing to unpack .../17-libctf0_2.39-8ubuntu2_s390x.deb ... Unpacking libctf0:s390x (2.39-8ubuntu2) over (2.39-3ubuntu1) ... Preparing to unpack .../18-binutils-s390x-linux-gnu_2.39-8ubuntu2_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.39-8ubuntu2) over (2.39-3ubuntu1) ... Preparing to unpack .../19-libbinutils_2.39-8ubuntu2_s390x.deb ... Unpacking libbinutils:s390x (2.39-8ubuntu2) over (2.39-3ubuntu1) ... Preparing to unpack .../20-binutils_2.39-8ubuntu2_s390x.deb ... Unpacking binutils (2.39-8ubuntu2) over (2.39-3ubuntu1) ... Preparing to unpack .../21-binutils-common_2.39-8ubuntu2_s390x.deb ... Unpacking binutils-common:s390x (2.39-8ubuntu2) over (2.39-3ubuntu1) ... Preparing to unpack .../22-libfakeroot_1.30.1-1ubuntu1_s390x.deb ... Unpacking libfakeroot:s390x (1.30.1-1ubuntu1) over (1.29-1ubuntu1) ... Preparing to unpack .../23-fakeroot_1.30.1-1ubuntu1_s390x.deb ... Unpacking fakeroot (1.30.1-1ubuntu1) over (1.29-1ubuntu1) ... Preparing to unpack .../24-libassuan0_2.5.5-5_s390x.deb ... Unpacking libassuan0:s390x (2.5.5-5) over (2.5.5-4) ... Preparing to unpack .../25-pinentry-curses_1.2.1-1ubuntu1_s390x.deb ... Unpacking pinentry-curses (1.2.1-1ubuntu1) over (1.2.0-2ubuntu1) ... Preparing to unpack .../26-gpg_2.2.40-1ubuntu1_s390x.deb ... Unpacking gpg (2.2.40-1ubuntu1) over (2.2.35-3ubuntu1) ... Preparing to unpack .../27-gpgconf_2.2.40-1ubuntu1_s390x.deb ... Unpacking gpgconf (2.2.40-1ubuntu1) over (2.2.35-3ubuntu1) ... Preparing to unpack .../28-gpg-agent_2.2.40-1ubuntu1_s390x.deb ... Unpacking gpg-agent (2.2.40-1ubuntu1) over (2.2.35-3ubuntu1) ... Preparing to unpack .../29-linux-libc-dev_5.19.0-23.24_s390x.deb ... Unpacking linux-libc-dev:s390x (5.19.0-23.24) over (5.19.0-21.21) ... Setting up libip4tc2:s390x (1.8.7-1ubuntu7) ... Setting up libapparmor1:s390x (3.0.7-1ubuntu3) ... Setting up init (1.65.2) ... Setting up libsqlite3-0:s390x (3.40.0-1) ... Setting up binutils-common:s390x (2.39-8ubuntu2) ... Setting up libssl3:s390x (3.0.5-2ubuntu2) ... Setting up linux-libc-dev:s390x (5.19.0-23.24) ... Setting up libctf-nobfd0:s390x (2.39-8ubuntu2) ... Setting up libcom-err2:s390x (1.46.6~rc1-1ubuntu1) ... Setting up libassuan0:s390x (2.5.5-5) ... Setting up libfakeroot:s390x (1.30.1-1ubuntu1) ... Setting up libkrb5support0:s390x (1.20.1-1) ... Setting up fakeroot (1.30.1-1ubuntu1) ... Setting up perl-modules-5.36 (5.36.0-4ubuntu2) ... Setting up xz-utils (5.2.7-0.1) ... Setting up libss2:s390x (1.46.6~rc1-1ubuntu1) ... Setting up libk5crypto3:s390x (1.20.1-1) ... Setting up logsave (1.46.6~rc1-1ubuntu1) ... Setting up libcrypt-dev:s390x (1:4.4.33-1) ... Setting up libkrb5-3:s390x (1.20.1-1) ... Setting up libbinutils:s390x (2.39-8ubuntu2) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libjson-c5:s390x (0.16-2) ... Setting up readline-common (8.2-1.2) ... Setting up libperl5.36:s390x (5.36.0-4ubuntu2) ... Setting up libctf0:s390x (2.39-8ubuntu2) ... Setting up pinentry-curses (1.2.1-1ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.39-8ubuntu2) ... Setting up libreadline8:s390x (8.2-1.2) ... Setting up e2fsprogs (1.46.6~rc1-1ubuntu1) ... Setting up binutils (2.39-8ubuntu2) ... Setting up perl (5.36.0-4ubuntu2) ... Setting up libgssapi-krb5-2:s390x (1.20.1-1) ... Setting up gpgconf (2.2.40-1ubuntu1) ... Setting up libcryptsetup12:s390x (2:2.5.0-6ubuntu1) ... Setting up gpg (2.2.40-1ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu1) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24626277 s390x lunar-proposed -c chroot:build-PACKAGEBUILD-24626277 --arch=s390x --dist=lunar-proposed --nolog unifrac-tools_1.1.1-4.dsc Initiating build PACKAGEBUILD-24626277 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:01:44 UTC 2022 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-010.buildd +==============================================================================+ | unifrac-tools 1.1.1-4 (s390x) Tue, 22 Nov 2022 16:05:46 +0000 | +==============================================================================+ Package: unifrac-tools Version: 1.1.1-4 Source Version: 1.1.1-4 Distribution: lunar-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24626277/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/unifrac-tools-6zBDga/resolver-DGx5b4' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- unifrac-tools_1.1.1-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/unifrac-tools-6zBDga/unifrac-tools-1.1.1' with '<>' I: NOTICE: Log filtering will replace 'build/unifrac-tools-6zBDga' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, libhdf5-dev, hdf5-helpers, liblz4-dev, libblas-dev, liblapacke-dev, chrpath, python3, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-exec, libhdf5-dev, hdf5-helpers, liblz4-dev, libblas-dev, liblapacke-dev, chrpath, python3, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [428 B] Get:5 copy:/<>/apt_archive ./ Packages [500 B] Fetched 1885 B in 0s (187 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas-dev libblas3 libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblapacke liblapacke-dev libldap-2.5-0 liblz4-dev libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-minimal python3.10 python3.10-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas-dev libblas3 libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblapacke liblapacke-dev libldap-2.5-0 liblz4-dev libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-minimal python3.10 python3.10-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 40.7 MB of archives. After this operation, 173 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [728 B] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpython3.10-minimal s390x 3.10.8-3 [798 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libexpat1 s390x 2.5.0-1 [81.6 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3.10-minimal s390x 3.10.8-3 [1949 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3-minimal s390x 3.10.6-1ubuntu1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main s390x media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x libmpdec3 s390x 2.5.1-2build2 [90.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpython3.10-stdlib s390x 3.10.8-3 [1752 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3.10 s390x 3.10.8-3 [499 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libpython3-stdlib s390x 3.10.6-1ubuntu1 [6880 B] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x python3 s390x 3.10.6-1ubuntu1 [22.3 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libelf1 s390x 0.188-1 [54.5 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main s390x libicu71 s390x 71.1-3ubuntu1 [10.5 MB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libxml2 s390x 2.9.14+dfsg-1.1 [717 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x bsdextrautils s390x 2.38-4ubuntu1 [71.6 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic-mgc s390x 1:5.41-4 [258 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic1 s390x 1:5.41-4 [84.8 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x file s390x 1:5.41-4 [21.4 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gettext-base s390x 0.21-10 [37.6 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x groff-base s390x 1.22.4-9 [914 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x libnghttp2-14 s390x 1.50.0-1 [72.5 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main s390x libpsl5 s390x 0.21.0-1.2build2 [58.5 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x man-db s390x 2.11.1-1 [1216 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x m4 s390x 1.4.19-1 [243 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x autoconf all 2.71-2 [338 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x autopoint all 0.21-10 [421 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/universe s390x chrpath s390x 0.16-2 [13.2 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main s390x libtool all 2.4.7-4 [166 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main s390x dh-autoreconf all 20 [16.1 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsub-override-perl all 0.09-4 [8706 B] Get:37 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main s390x dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libdw1 s390x 0.188-1 [245 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main s390x dwz s390x 0.14+20220924-2 [108 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gettext s390x 0.21-10 [851 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x debhelper all 13.10.1ubuntu1 [924 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/universe s390x hdf5-helpers s390x 1.10.8+repack-1ubuntu1 [13.7 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/universe s390x libaec0 s390x 1.0.6-1 [21.1 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main s390x libblas3 s390x 3.10.1-2 [169 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main s390x libblas-dev s390x 3.10.1-2 [157 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libbrotli1 s390x 1.0.9-2build7 [311 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main s390x libsasl2-modules-db s390x 2.1.28+dfsg-6ubuntu2 [20.1 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main s390x libsasl2-2 s390x 2.1.28+dfsg-6ubuntu2 [57.1 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libldap-2.5-0 s390x 2.5.13+dfsg-1ubuntu2 [179 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build4 [56.4 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libssh-4 s390x 0.10.4-2 [173 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcurl4 s390x 7.86.0-2 [290 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcurl4-openssl-dev s390x 7.86.0-2 [389 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main s390x libgfortran5 s390x 12.2.0-9ubuntu1 [468 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/universe s390x libsz2 s390x 1.0.6-1 [5144 B] Get:60 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-103-1 s390x 1.10.8+repack-1ubuntu1 [1212 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-cpp-103-1 s390x 1.10.8+repack-1ubuntu1 [117 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-fortran-102 s390x 1.10.8+repack-1ubuntu1 [86.7 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-hl-100 s390x 1.10.8+repack-1ubuntu1 [54.9 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-hl-fortran-100 s390x 1.10.8+repack-1ubuntu1 [30.6 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-hl-cpp-100 s390x 1.10.8+repack-1ubuntu1 [10.5 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x zlib1g-dev s390x 1:1.2.13.dfsg-1ubuntu2 [894 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg-turbo8 s390x 2.1.2-0ubuntu1 [119 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg-turbo8-dev s390x 2.1.2-0ubuntu1 [231 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg8 s390x 8c-2ubuntu10 [2264 B] Get:70 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg8-dev s390x 8c-2ubuntu10 [1478 B] Get:71 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg-dev s390x 8c-2ubuntu10 [1476 B] Get:72 http://ftpmaster.internal/ubuntu lunar/universe s390x libaec-dev s390x 1.0.6-1 [19.1 kB] Get:73 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libssl-dev s390x 3.0.5-2ubuntu2 [2027 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/universe s390x libhdf5-dev s390x 1.10.8+repack-1ubuntu1 [2676 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main s390x liblapack3 s390x 3.10.1-2 [2066 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main s390x liblapack-dev s390x 3.10.1-2 [3979 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main s390x libtmglib3 s390x 3.10.1-2 [117 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main s390x liblapacke s390x 3.10.1-2 [403 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main s390x libtmglib-dev s390x 3.10.1-2 [111 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main s390x liblapacke-dev s390x 3.10.1-2 [333 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main s390x dh-exec s390x 0.27 [25.2 kB] Get:82 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblz4-dev s390x 1.9.4-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.7 MB in 3s (13.2 MB/s) Selecting previously unselected package libpython3.10-minimal:s390x. (Reading database ... 15292 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.8-3_s390x.deb ... Unpacking libpython3.10-minimal:s390x (3.10.8-3) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.5.0-1_s390x.deb ... Unpacking libexpat1:s390x (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-3_s390x.deb ... Unpacking python3.10-minimal (3.10.8-3) ... Setting up libpython3.10-minimal:s390x (3.10.8-3) ... Setting up libexpat1:s390x (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 15595 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1ubuntu1_s390x.deb ... Unpacking python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:s390x. Preparing to unpack .../2-libmpdec3_2.5.1-2build2_s390x.deb ... Unpacking libmpdec3:s390x (2.5.1-2build2) ... Selecting previously unselected package libpython3.10-stdlib:s390x. Preparing to unpack .../3-libpython3.10-stdlib_3.10.8-3_s390x.deb ... Unpacking libpython3.10-stdlib:s390x (3.10.8-3) ... Selecting previously unselected package python3.10. Preparing to unpack .../4-python3.10_3.10.8-3_s390x.deb ... Unpacking python3.10 (3.10.8-3) ... Selecting previously unselected package libpython3-stdlib:s390x. Preparing to unpack .../5-libpython3-stdlib_3.10.6-1ubuntu1_s390x.deb ... Unpacking libpython3-stdlib:s390x (3.10.6-1ubuntu1) ... Setting up python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 15996 files and directories currently installed.) Preparing to unpack .../00-python3_3.10.6-1ubuntu1_s390x.deb ... Unpacking python3 (3.10.6-1ubuntu1) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../01-libelf1_0.188-1_s390x.deb ... Unpacking libelf1:s390x (0.188-1) ... Selecting previously unselected package libicu71:s390x. Preparing to unpack .../02-libicu71_71.1-3ubuntu1_s390x.deb ... Unpacking libicu71:s390x (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.1_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../04-bsdextrautils_2.38-4ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.41-4_s390x.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../06-libmagic1_1%3a5.41-4_s390x.deb ... Unpacking libmagic1:s390x (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.41-4_s390x.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-10_s390x.deb ... Unpacking gettext-base (0.21-10) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../09-libuchardet0_0.0.7-1build2_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.22.4-9_s390x.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../11-libnghttp2-14_1.50.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.50.0-1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../12-libpipeline1_1.5.7-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.7-1) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../13-libpsl5_0.21.0-1.2build2_s390x.deb ... Unpacking libpsl5:s390x (0.21.0-1.2build2) ... Selecting previously unselected package man-db. Preparing to unpack .../14-man-db_2.11.1-1_s390x.deb ... Unpacking man-db (2.11.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.19-1_s390x.deb ... Unpacking m4 (1.4.19-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.21-10_all.deb ... Unpacking autopoint (0.21-10) ... Selecting previously unselected package chrpath. Preparing to unpack .../20-chrpath_0.16-2_s390x.deb ... Unpacking chrpath (0.16-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../21-libdebhelper-perl_13.10.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.10.1ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../22-libtool_2.4.7-4_all.deb ... Unpacking libtool (2.4.7-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../23-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../24-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../25-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../26-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../27-dh-strip-nondeterminism_1.13.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-1) ... Selecting previously unselected package libdw1:s390x. Preparing to unpack .../28-libdw1_0.188-1_s390x.deb ... Unpacking libdw1:s390x (0.188-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../29-debugedit_1%3a5.0-5_s390x.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../30-dwz_0.14+20220924-2_s390x.deb ... Unpacking dwz (0.14+20220924-2) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.21-10_s390x.deb ... Unpacking gettext (0.21-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../33-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../34-debhelper_13.10.1ubuntu1_all.deb ... Unpacking debhelper (13.10.1ubuntu1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../35-hdf5-helpers_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking hdf5-helpers (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package libaec0:s390x. Preparing to unpack .../36-libaec0_1.0.6-1_s390x.deb ... Unpacking libaec0:s390x (1.0.6-1) ... Selecting previously unselected package libblas3:s390x. Preparing to unpack .../37-libblas3_3.10.1-2_s390x.deb ... Unpacking libblas3:s390x (3.10.1-2) ... Selecting previously unselected package libblas-dev:s390x. Preparing to unpack .../38-libblas-dev_3.10.1-2_s390x.deb ... Unpacking libblas-dev:s390x (3.10.1-2) ... Selecting previously unselected package libbrotli1:s390x. Preparing to unpack .../39-libbrotli1_1.0.9-2build7_s390x.deb ... Unpacking libbrotli1:s390x (1.0.9-2build7) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../40-libsasl2-modules-db_2.1.28+dfsg-6ubuntu2_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg-6ubuntu2) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../41-libsasl2-2_2.1.28+dfsg-6ubuntu2_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.28+dfsg-6ubuntu2) ... Selecting previously unselected package libldap-2.5-0:s390x. Preparing to unpack .../42-libldap-2.5-0_2.5.13+dfsg-1ubuntu2_s390x.deb ... Unpacking libldap-2.5-0:s390x (2.5.13+dfsg-1ubuntu2) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../43-librtmp1_2.4+20151223.gitfa8646d.1-2build4_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:s390x. Preparing to unpack .../44-libssh-4_0.10.4-2_s390x.deb ... Unpacking libssh-4:s390x (0.10.4-2) ... Selecting previously unselected package libcurl4:s390x. Preparing to unpack .../45-libcurl4_7.86.0-2_s390x.deb ... Unpacking libcurl4:s390x (7.86.0-2) ... Selecting previously unselected package libcurl4-openssl-dev. Preparing to unpack .../46-libcurl4-openssl-dev_7.86.0-2_s390x.deb ... Unpacking libcurl4-openssl-dev (7.86.0-2) ... Selecting previously unselected package libgfortran5:s390x. Preparing to unpack .../47-libgfortran5_12.2.0-9ubuntu1_s390x.deb ... Unpacking libgfortran5:s390x (12.2.0-9ubuntu1) ... Selecting previously unselected package libsz2:s390x. Preparing to unpack .../48-libsz2_1.0.6-1_s390x.deb ... Unpacking libsz2:s390x (1.0.6-1) ... Selecting previously unselected package libhdf5-103-1:s390x. Preparing to unpack .../49-libhdf5-103-1_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-103-1:s390x (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package libhdf5-cpp-103-1:s390x. Preparing to unpack .../50-libhdf5-cpp-103-1_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-cpp-103-1:s390x (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package libhdf5-fortran-102:s390x. Preparing to unpack .../51-libhdf5-fortran-102_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-fortran-102:s390x (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package libhdf5-hl-100:s390x. Preparing to unpack .../52-libhdf5-hl-100_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-hl-100:s390x (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package libhdf5-hl-fortran-100:s390x. Preparing to unpack .../53-libhdf5-hl-fortran-100_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-hl-fortran-100:s390x (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package libhdf5-hl-cpp-100:s390x. Preparing to unpack .../54-libhdf5-hl-cpp-100_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-hl-cpp-100:s390x (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../55-zlib1g-dev_1%3a1.2.13.dfsg-1ubuntu2_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.13.dfsg-1ubuntu2) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../56-libjpeg-turbo8_2.1.2-0ubuntu1_s390x.deb ... Unpacking libjpeg-turbo8:s390x (2.1.2-0ubuntu1) ... Selecting previously unselected package libjpeg-turbo8-dev:s390x. Preparing to unpack .../57-libjpeg-turbo8-dev_2.1.2-0ubuntu1_s390x.deb ... Unpacking libjpeg-turbo8-dev:s390x (2.1.2-0ubuntu1) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../58-libjpeg8_8c-2ubuntu10_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu10) ... Selecting previously unselected package libjpeg8-dev:s390x. Preparing to unpack .../59-libjpeg8-dev_8c-2ubuntu10_s390x.deb ... Unpacking libjpeg8-dev:s390x (8c-2ubuntu10) ... Selecting previously unselected package libjpeg-dev:s390x. Preparing to unpack .../60-libjpeg-dev_8c-2ubuntu10_s390x.deb ... Unpacking libjpeg-dev:s390x (8c-2ubuntu10) ... Selecting previously unselected package libaec-dev:s390x. Preparing to unpack .../61-libaec-dev_1.0.6-1_s390x.deb ... Unpacking libaec-dev:s390x (1.0.6-1) ... Selecting previously unselected package libssl-dev:s390x. Preparing to unpack .../62-libssl-dev_3.0.5-2ubuntu2_s390x.deb ... Unpacking libssl-dev:s390x (3.0.5-2ubuntu2) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../63-libhdf5-dev_1.10.8+repack-1ubuntu1_s390x.deb ... Unpacking libhdf5-dev (1.10.8+repack-1ubuntu1) ... Selecting previously unselected package liblapack3:s390x. Preparing to unpack .../64-liblapack3_3.10.1-2_s390x.deb ... Unpacking liblapack3:s390x (3.10.1-2) ... Selecting previously unselected package liblapack-dev:s390x. Preparing to unpack .../65-liblapack-dev_3.10.1-2_s390x.deb ... Unpacking liblapack-dev:s390x (3.10.1-2) ... Selecting previously unselected package libtmglib3:s390x. Preparing to unpack .../66-libtmglib3_3.10.1-2_s390x.deb ... Unpacking libtmglib3:s390x (3.10.1-2) ... Selecting previously unselected package liblapacke:s390x. Preparing to unpack .../67-liblapacke_3.10.1-2_s390x.deb ... Unpacking liblapacke:s390x (3.10.1-2) ... Selecting previously unselected package libtmglib-dev:s390x. Preparing to unpack .../68-libtmglib-dev_3.10.1-2_s390x.deb ... Unpacking libtmglib-dev:s390x (3.10.1-2) ... Selecting previously unselected package liblapacke-dev:s390x. Preparing to unpack .../69-liblapacke-dev_3.10.1-2_s390x.deb ... Unpacking liblapacke-dev:s390x (3.10.1-2) ... Selecting previously unselected package dh-exec. Preparing to unpack .../70-dh-exec_0.27_s390x.deb ... Unpacking dh-exec (0.27) ... Selecting previously unselected package liblz4-dev:s390x. Preparing to unpack .../71-liblz4-dev_1.9.4-1_s390x.deb ... Unpacking liblz4-dev:s390x (1.9.4-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../72-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up libicu71:s390x (71.1-3ubuntu1) ... Setting up libpsl5:s390x (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up hdf5-helpers (1.10.8+repack-1ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:s390x (1.0.9-2build7) ... Setting up libnghttp2-14:s390x (1.50.0-1) ... Setting up libmagic1:s390x (1:5.41-4) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libaec0:s390x (1.0.6-1) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg-6ubuntu2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:s390x (3.10.1-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libssl-dev:s390x (3.0.5-2ubuntu2) ... Setting up autopoint (0.21-10) ... Setting up liblz4-dev:s390x (1.9.4-1) ... Setting up libjpeg-turbo8:s390x (2.1.2-0ubuntu1) ... Setting up libsasl2-2:s390x (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:s390x (0.10.4-2) ... Setting up libgfortran5:s390x (12.2.0-9ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up zlib1g-dev:s390x (1:1.2.13.dfsg-1ubuntu2) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libmpdec3:s390x (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:s390x (0.188-1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.1) ... Setting up chrpath (0.16-2) ... Setting up libblas-dev:s390x (3.10.1-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up libsz2:s390x (1.0.6-1) ... Setting up libjpeg8:s390x (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:s390x (0.188-1) ... Setting up libjpeg-turbo8-dev:s390x (2.1.2-0ubuntu1) ... Setting up liblapack3:s390x (3.10.1-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-4) ... Setting up libaec-dev:s390x (1.0.6-1) ... Setting up libldap-2.5-0:s390x (2.5.13+dfsg-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.10-stdlib:s390x (3.10.8-3) ... Setting up dh-autoreconf (20) ... Setting up libtmglib3:s390x (3.10.1-2) ... Setting up liblapack-dev:s390x (3.10.1-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up liblapacke:s390x (3.10.1-2) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:s390x (7.86.0-2) ... Setting up libtmglib-dev:s390x (3.10.1-2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu10) ... Setting up libpython3-stdlib:s390x (3.10.6-1ubuntu1) ... Setting up python3.10 (3.10.8-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:s390x (8c-2ubuntu10) ... Setting up python3 (3.10.6-1ubuntu1) ... Setting up liblapacke-dev:s390x (3.10.1-2) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcurl4-openssl-dev (7.86.0-2) ... Setting up libhdf5-103-1:s390x (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-cpp-103-1:s390x (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-hl-100:s390x (1.10.8+repack-1ubuntu1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up dh-exec (0.27) ... Setting up libhdf5-hl-cpp-100:s390x (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-fortran-102:s390x (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-hl-fortran-100:s390x (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-dev (1.10.8+repack-1ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (251.4-1ubuntu7) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:01:44 UTC 2022 s390x (s390x) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-s390x-linux-gnu_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 chrpath_0.16-2 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hdf5-helpers_1.10.8+repack-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapparmor1_3.0.7-1ubuntu3 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-9ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-9ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39-8ubuntu2 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-9ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu1 libctf-nobfd0_2.39-8ubuntu2 libctf0_2.39-8ubuntu2 libcurl4_7.86.0-2 libcurl4-openssl-dev_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.9ubuntu1 libdw1_0.188-1 libelf1_0.188-1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-9ubuntu1 libgcc-s1_12.2.0-9ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-9ubuntu1 libgmp10_2:6.2.1+dfsg1-1ubuntu2 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-9ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhdf5-103-1_1.10.8+repack-1ubuntu1 libhdf5-cpp-103-1_1.10.8+repack-1ubuntu1 libhdf5-dev_1.10.8+repack-1ubuntu1 libhdf5-fortran-102_1.10.8+repack-1ubuntu1 libhdf5-hl-100_1.10.8+repack-1ubuntu1 libhdf5-hl-cpp-100_1.10.8+repack-1ubuntu1 libhdf5-hl-fortran-100_1.10.8+repack-1ubuntu1 libhogweed6_3.8.1-2 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-9ubuntu1 libjpeg-dev_8c-2ubuntu10 libjpeg-turbo8_2.1.2-0ubuntu1 libjpeg-turbo8-dev_2.1.2-0ubuntu1 libjpeg8_8c-2ubuntu10 libjpeg8-dev_8c-2ubuntu10 libjson-c5_0.16-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 liblapacke_3.10.1-2 liblapacke-dev_3.10.1-2 libldap-2.5-0_2.5.13+dfsg-1ubuntu2 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblz4-dev_1.9.4-1 liblzma5_5.2.7-0.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpdec3_2.5.1-2build2 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-4ubuntu2 libpipeline1_1.5.7-1 libpng16-16_1.6.38-2 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.0-1.2build2 libpython3-stdlib_3.10.6-1ubuntu1 libpython3.10-minimal_3.10.8-3 libpython3.10-stdlib_3.10.8-3 libreadline8_8.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu2 libsasl2-modules-db_2.1.28+dfsg-6ubuntu2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1ubuntu1 libssh-4_0.10.4-2 libssl-dev_3.0.5-2ubuntu2 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_251.4-1ubuntu7 libsystemd0_251.4-1ubuntu7 libsz2_1.0.6-1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtmglib-dev_3.10.1-2 libtmglib3_3.10.1-2 libtool_2.4.7-4 libubsan1_12.2.0-9ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.4-1ubuntu7 libunistring2_1.0-2 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lsb-base_11.2ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu2 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.36.0-4ubuntu2 perl-base_5.36.0-4ubuntu2 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-4ubuntu2 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.10.6-1ubuntu1 python3-minimal_3.10.6-1ubuntu1 python3.10_3.10.8-3 python3.10-minimal_3.10.8-3 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_251.4-1ubuntu7 systemd-sysv_251.4-1ubuntu7 sysvinit-utils_3.04-1ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022f-0ubuntu2 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.7-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu2 zlib1g-dev_1:1.2.13.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unifrac-tools Binary: unifrac-tools, libssu0, libssu-dev Architecture: any Version: 1.1.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/biocore/unifrac-tools Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/unifrac-tools Vcs-Git: https://salsa.debian.org/med-team/unifrac-tools.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-exec, libhdf5-dev, hdf5-helpers, liblz4-dev, libblas-dev, liblapacke-dev, chrpath, python3 Package-List: libssu-dev deb libdevel optional arch=any libssu0 deb libs optional arch=any unifrac-tools deb science optional arch=any Checksums-Sha1: 3a35e803c3ffc446ae9bef8590e5dbd82c3b44ee 131902 unifrac-tools_1.1.1.orig.tar.gz 71f632a5e17e98c8fbfa79be82d6313659e52639 7264 unifrac-tools_1.1.1-4.debian.tar.xz Checksums-Sha256: 7bf3847bf14fc57b6edcbae5e20230f88a590867b51c92f7881bcf2b2063dde5 131902 unifrac-tools_1.1.1.orig.tar.gz d1a849db917b64faa8bc67e4229e34312e7dd91c3f886b81e08d51cafb34474f 7264 unifrac-tools_1.1.1-4.debian.tar.xz Files: 6b385a1c776669bc02af7ef8ccea89a1 131902 unifrac-tools_1.1.1.orig.tar.gz bca3b4c1dc22479f66e40674a9f3aab6 7264 unifrac-tools_1.1.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNEHdoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGVBA//TGgzvgya65AcvLrKfjwkpsys/8iAus1R uoSTWxIFb8hOzvgewtVKm6J1Qcu7ZGfVCwH3EnG2F2b8zI6jbWGhIm0RmUVPFjTO 7YilaWgsWEdiUipA5sxB8wQqS2TNN+rIkYjDRTmfCzOhBYoDb4qXuOhEr5MVVY5g WD72DkjisBbIvO+QugFS+dAZbFYvxmQPh9k9r7s4Nap7TgnB3/zxiDekQpFcqjcZ ZHGM55WeVQUJu2YQiZwAwYCjlASykeKLsK0ifGF3qRiv5vN1XXgon6MyLWG260eT numlIwSHr71goSMurWf1+OxDBuE2oJJGAGOKO6sNbh6/ehAikmtanomEsmdXRDKt mjH691zGW7T7iVjQCmM9CvDRcGCvLs4eae1MMQAnI9qnxU01HLNV/ImaAR84LtUI hNlf9COt3DF00oja8yuvAua+NWWSgwqZV1eA6zEecltB6ub8+VaZ8cR4rGSdpzoK AZ4tCR2E3YQIgAPNaDT+Nsr9UGEEe+Lw9IBsae/wSCY//IcCmuqXpa26ZwdnHDji c9pwiOzlf3XUjtNfXq0YEjFuEX8D9smlENlDTSnZYq7RUUhKEkD5KgCpbs40p8OP LDJl/peJgt+nHZA/AY52aEjPYmVepuEUpkdDTeV5laYhCc2X20+lHPkx3ONyM/v4 LOvoLeWTBRk= =1PtX -----END PGP SIGNATURE----- gpgv: Signature made Mon Oct 10 13:27:54 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./unifrac-tools_1.1.1-4.dsc dpkg-source: info: extracting unifrac-tools in /<> dpkg-source: info: unpacking unifrac-tools_1.1.1.orig.tar.gz dpkg-source: info: unpacking unifrac-tools_1.1.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_non-free_headers.patch dpkg-source: info: applying enable_linking_to_shared_hdf5_lib.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying soname.patch dpkg-source: info: applying baseline.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24626277 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24626277 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24626277 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package unifrac-tools dpkg-buildpackage: info: source version 1.1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' cd test && make clean make[2]: Entering directory '/<>/test' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *.o capi_test make[2]: Leaving directory '/<>/test' cd src && make clean make[2]: Entering directory '/<>/src' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *.o ssu faithpd test_su test_ska test_api libssu.so make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/bin mkdir -p /<>/debian/tmp/usr/lib dh_auto_build -- PREFIX=/<>/debian/tmp/usr make -j4 "INSTALL=install --strip-program=true" PREFIX=/<>/debian/tmp/usr make[2]: Entering directory '/<>' cd src && make api cd src && make main cd src && make install make[3]: Entering directory '/<>/src' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/<>/src' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/<>/src' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c tree.cpp -o tree.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c tree.cpp -o tree.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c tree.cpp -o tree.o tree.cpp: In function ‘std::string& rtrim(std::string&)’: tree.cpp:374:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 374 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from tree.hpp:13, from tree.cpp:1: /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ tree.cpp: In function ‘std::string& rtrim(std::string&)’: tree.cpp:374:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 374 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from tree.hpp:13, from tree.cpp:1: /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ tree.cpp: In function ‘std::string& rtrim(std::string&)’: tree.cpp:374:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 374 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from tree.hpp:13, from tree.cpp:1: /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c biom.cpp -o biom.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c biom.cpp -o biom.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c biom.cpp -o biom.o biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:30:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 30 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:14, from biom.cpp:13: /usr/include/hdf5/serial/H5File.h:105:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 105 | H5File(const H5File &original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47: /usr/include/hdf5/serial/H5Group.h:63:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 63 | Group(const Group &original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:30:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 30 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp: In constructor ‘su::biom::biom(char**, char**, uint32_t*, uint32_t*, double*, int, int, int)’: biom.cpp:176:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 176 | for(unsigned int i = 0; i < n_obs; i++) { | ~~^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:224:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 224 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 225 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:256:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 256 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 257 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:305:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 305 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 306 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:311:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 311 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 312 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:412:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 412 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 413 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:418:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 418 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 419 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In instantiation of ‘void su::biom::get_obs_data_range_TT(const std::string&, unsigned int, unsigned int, bool, TFloat*) const [with TFloat = double; std::string = std::__cxx11::basic_string]’: biom.cpp:377:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j]’: biom.cpp:381:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j >&)’: biom.cpp:224:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 224 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 225 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:256:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 256 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 257 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:305:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 305 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 306 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:311:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 311 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 312 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:412:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 412 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 413 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:418:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 418 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 419 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:30:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 30 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:14, from biom.cpp:13: /usr/include/hdf5/serial/H5File.h:105:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 105 | H5File(const H5File &original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47: /usr/include/hdf5/serial/H5Group.h:63:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 63 | Group(const Group &original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:30:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 30 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp: In constructor ‘su::biom::biom(char**, char**, uint32_t*, uint32_t*, double*, int, int, int)’: biom.cpp:176:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 176 | for(unsigned int i = 0; i < n_obs; i++) { | ~~^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:224:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 224 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 225 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:256:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 256 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 257 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:305:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 305 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 306 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:311:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 311 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 312 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:412:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 412 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 413 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:418:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 418 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 419 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In instantiation of ‘void su::biom::get_obs_data_range_TT(const std::string&, unsigned int, unsigned int, bool, TFloat*) const [with TFloat = double; std::string = std::__cxx11::basic_string]’: biom.cpp:377:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j]’: biom.cpp:381:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j]’: biom.cpp:377:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j]’: biom.cpp:381:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:13: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:13: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition In file included from unifrac.cpp:13: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC api.cpp: In function ‘compute_status one_off_inmem_cpp(su::biom&, su::BPTree&, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:393:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 393 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:68:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 68 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:421:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 421 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:431:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 431 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:68:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 68 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:456:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 456 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:471:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 471 | PARSE_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp64_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:543:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 543 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix_fp32(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp32_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:554:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 554 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘IOStatus read_partial_header_fd(int, TPMat&)’: api.cpp:1115:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 1115 | if(n_samples <= 0 || n_stripes <= 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp: In instantiation of ‘IOStatus read_partial_header_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1283:48: required from here api.cpp:1115:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] api.cpp:1141:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1141 | if (cnt != sample_id_length_compressed) {free(cmp_buf); return magic_incompatible;} | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1147 | if (cnt!=sample_id_length) {free(samples_buf); free(cmp_buf); return magic_incompatible;} | ~~~^~~~~~~~~~~~~~~~~~ api.cpp:1151:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1151 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp: In instantiation of ‘IOStatus read_partial_data_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1285:49: required from here api.cpp:1184:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1184 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:1188:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1188 | if ( (i+1)n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1397:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1397 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1412:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1412 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In instantiation of ‘MergeStatus check_partial(const TPMat* const*, int, bool) [with TPMat = partial_mat; MergeStatus = merge_status]’: api.cpp:1429:36: required from here api.cpp:1362:39: warning: comparison of integer expressions of different signedness: ‘const uint32_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare] 1362 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1397:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1397 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1412:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1412 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = double; TMat = mat_full_fp64]’: api.cpp:210:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 210 | ftruncate(fd,msize); | ~~~~~~~~~^~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = float; TMat = mat_full_fp32]’: api.cpp:210:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] api.cpp: In function ‘compute_status one_off_inmem_cpp(su::biom&, su::BPTree&, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:393:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 393 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:68:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 68 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:421:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 421 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:431:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 431 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:68:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 68 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:456:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 456 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:471:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 471 | PARSE_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp64_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:543:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 543 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix_fp32(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp32_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:554:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 554 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘IOStatus read_partial_header_fd(int, TPMat&)’: api.cpp:1115:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 1115 | if(n_samples <= 0 || n_stripes <= 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp: In function ‘compute_status one_off_inmem_cpp(su::biom&, su::BPTree&, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:393:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 393 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:68:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 68 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:421:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 421 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In instantiation of ‘IOStatus read_partial_header_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1283:48: required from here api.cpp:1115:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] api.cpp:1141:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1141 | if (cnt != sample_id_length_compressed) {free(cmp_buf); return magic_incompatible;} | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:431:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 431 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp:1147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1147 | if (cnt!=sample_id_length) {free(samples_buf); free(cmp_buf); return magic_incompatible;} | ~~~^~~~~~~~~~~~~~~~~~ api.cpp:1151:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1151 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp: In instantiation of ‘IOStatus read_partial_data_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1285:49: required from here api.cpp:1184:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1184 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:1188:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1188 | if ( (i+1)n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1397:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1397 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1412:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1412 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In instantiation of ‘MergeStatus check_partial(const TPMat* const*, int, bool) [with TPMat = partial_mat; MergeStatus = merge_status]’: api.cpp:1429:36: required from here api.cpp:1362:39: warning: comparison of integer expressions of different signedness: ‘const uint32_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare] 1362 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp64_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:543:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 543 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp:1397:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1397 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1412:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1412 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix_fp32(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp32_t**)’: api.cpp:60:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 60 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:554:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 554 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘IOStatus read_partial_header_fd(int, TPMat&)’: api.cpp:1115:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 1115 | if(n_samples <= 0 || n_stripes <= 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp: In instantiation of ‘IOStatus read_partial_header_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1283:48: required from here api.cpp:1115:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] api.cpp:1141:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1141 | if (cnt != sample_id_length_compressed) {free(cmp_buf); return magic_incompatible;} | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1147 | if (cnt!=sample_id_length) {free(samples_buf); free(cmp_buf); return magic_incompatible;} | ~~~^~~~~~~~~~~~~~~~~~ api.cpp:1151:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1151 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp: In instantiation of ‘IOStatus read_partial_data_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1285:49: required from here api.cpp:1184:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1184 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:1188:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1188 | if ( (i+1)n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1397:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1397 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1412:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1412 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In instantiation of ‘MergeStatus check_partial(const TPMat* const*, int, bool) [with TPMat = partial_mat; MergeStatus = merge_status]’: api.cpp:1429:36: required from here api.cpp:1362:39: warning: comparison of integer expressions of different signedness: ‘const uint32_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare] 1362 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1397:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1397 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1412:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1412 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = double; TMat = mat_full_fp64]’: api.cpp:210:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 210 | ftruncate(fd,msize); | ~~~~~~~~~^~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = float; TMat = mat_full_fp32]’: api.cpp:210:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = double; TMat = mat_full_fp64]’: api.cpp:210:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 210 | ftruncate(fd,msize); | ~~~~~~~~~^~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = float; TMat = mat_full_fp32]’: api.cpp:210:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_internal.cpp -o unifrac_internal.o In file included from unifrac_internal.cpp:12: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_internal.cpp -o unifrac_internal.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_internal.cpp -o unifrac_internal.o In file included from unifrac_internal.cpp:12: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition In file included from unifrac_internal.cpp:12: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ unifrac_internal.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac_internal.cpp:36:1: warning: no return statement in function returning non-void [-Wreturn-type] 36 | } | ^ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ unifrac_internal.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac_internal.cpp:36:1: warning: no return statement in function returning non-void [-Wreturn-type] 36 | } | ^ unifrac_internal.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac_internal.cpp:36:1: warning: no return statement in function returning non-void [-Wreturn-type] 36 | } | ^ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_cmp.cpp -o unifrac_cmp_cpu.o In file included from unifrac_cmp.cpp:19: unifrac_task.hpp:187: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 187 | #pragma acc enter data create(buf[:bsize]) | unifrac_task.hpp:347: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 347 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:382: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 382 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:415: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 415 | #pragma acc enter data create(sums[:bsize]) | In file included from unifrac_cmp.cpp:24: unifrac_task.cpp:35: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 35 | #pragma acc loop seq | unifrac_task.cpp:90: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 90 | #pragma acc loop seq | unifrac_task.cpp:161: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 161 | #pragma acc loop seq | unifrac_task.cpp:218: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 218 | #pragma acc loop seq | unifrac_task.cpp:282: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 282 | #pragma acc loop seq | unifrac_task.cpp:353: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 353 | #pragma acc loop seq | unifrac_task.cpp:426: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 426 | #pragma acc loop seq | unifrac_task.cpp:504: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 504 | #pragma acc loop seq | unifrac_task.cpp:574: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 574 | #pragma acc loop vector | unifrac_task.cpp:603: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 603 | #pragma acc loop vector | unifrac_task.cpp:643: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 643 | #pragma acc loop seq | unifrac_task.cpp:741: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 741 | #pragma acc loop seq | unifrac_task.cpp:751: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 751 | #pragma acc loop seq | unifrac_cmp.cpp:83: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 83 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:181: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 181 | #pragma acc wait | unifrac_cmp.cpp:190: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 190 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:200: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 200 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:268: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 268 | #pragma acc enter data copyin(sample_total_counts[:n_samples_r]) | unifrac_cmp.cpp:279: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 279 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:324: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 324 | #pragma acc wait | unifrac_cmp.cpp:325: warning: ignoring ‘#pragma acc update’ [-Wunknown-pragmas] 325 | #pragma acc update device(lengths[:filled_emb]) | unifrac_cmp.cpp:333: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 333 | #pragma acc wait | unifrac_cmp.cpp:341: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 341 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:352: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 352 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:353: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 353 | #pragma acc exit data delete(sample_total_counts[:n_samples_r]) | h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_cmp.cpp -o unifrac_cmp_cpu.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_cmp.cpp -o unifrac_cmp_cpu.o In file included from unifrac_cmp.cpp:19: unifrac_task.hpp:187: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 187 | #pragma acc enter data create(buf[:bsize]) | unifrac_task.hpp:347: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 347 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:382: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 382 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:415: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 415 | #pragma acc enter data create(sums[:bsize]) | In file included from unifrac_cmp.cpp:24: unifrac_task.cpp:35: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 35 | #pragma acc loop seq | unifrac_task.cpp:90: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 90 | #pragma acc loop seq | unifrac_task.cpp:161: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 161 | #pragma acc loop seq | unifrac_task.cpp:218: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 218 | #pragma acc loop seq | unifrac_task.cpp:282: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 282 | #pragma acc loop seq | unifrac_task.cpp:353: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 353 | #pragma acc loop seq | unifrac_task.cpp:426: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 426 | #pragma acc loop seq | unifrac_task.cpp:504: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 504 | #pragma acc loop seq | unifrac_task.cpp:574: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 574 | #pragma acc loop vector | unifrac_task.cpp:603: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 603 | #pragma acc loop vector | unifrac_task.cpp:643: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 643 | #pragma acc loop seq | unifrac_task.cpp:741: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 741 | #pragma acc loop seq | unifrac_task.cpp:751: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 751 | #pragma acc loop seq | unifrac_cmp.cpp:83: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 83 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:181: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 181 | #pragma acc wait | unifrac_cmp.cpp:190: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 190 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:200: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 200 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:268: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 268 | #pragma acc enter data copyin(sample_total_counts[:n_samples_r]) | unifrac_cmp.cpp:279: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 279 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:324: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 324 | #pragma acc wait | unifrac_cmp.cpp:325: warning: ignoring ‘#pragma acc update’ [-Wunknown-pragmas] 325 | #pragma acc update device(lengths[:filled_emb]) | unifrac_cmp.cpp:333: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 333 | #pragma acc wait | unifrac_cmp.cpp:341: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 341 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:352: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 352 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:353: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 353 | #pragma acc exit data delete(sample_total_counts[:n_samples_r]) | In file included from unifrac_cmp.cpp:19: unifrac_task.hpp:187: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 187 | #pragma acc enter data create(buf[:bsize]) | unifrac_task.hpp:347: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 347 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:382: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 382 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:415: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 415 | #pragma acc enter data create(sums[:bsize]) | In file included from unifrac_cmp.cpp:24: unifrac_task.cpp:35: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 35 | #pragma acc loop seq | unifrac_task.cpp:90: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 90 | #pragma acc loop seq | unifrac_task.cpp:161: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 161 | #pragma acc loop seq | unifrac_task.cpp:218: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 218 | #pragma acc loop seq | unifrac_task.cpp:282: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 282 | #pragma acc loop seq | unifrac_task.cpp:353: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 353 | #pragma acc loop seq | unifrac_task.cpp:426: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 426 | #pragma acc loop seq | unifrac_task.cpp:504: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 504 | #pragma acc loop seq | unifrac_task.cpp:574: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 574 | #pragma acc loop vector | unifrac_task.cpp:603: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 603 | #pragma acc loop vector | unifrac_task.cpp:643: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 643 | #pragma acc loop seq | unifrac_task.cpp:741: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 741 | #pragma acc loop seq | unifrac_task.cpp:751: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 751 | #pragma acc loop seq | unifrac_cmp.cpp:83: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 83 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:181: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 181 | #pragma acc wait | unifrac_cmp.cpp:190: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 190 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:200: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 200 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:268: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 268 | #pragma acc enter data copyin(sample_total_counts[:n_samples_r]) | unifrac_cmp.cpp:279: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 279 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:324: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 324 | #pragma acc wait | unifrac_cmp.cpp:325: warning: ignoring ‘#pragma acc update’ [-Wunknown-pragmas] 325 | #pragma acc update device(lengths[:filled_emb]) | unifrac_cmp.cpp:333: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 333 | #pragma acc wait | unifrac_cmp.cpp:341: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 341 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:352: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 352 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:353: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 353 | #pragma acc exit data delete(sample_total_counts[:n_samples_r]) | unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:212:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:215:78: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:218:80: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:221:71: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:224:69: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:227:77: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:230:79: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:233:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:366:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:369:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:372:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:375:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:378:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:381:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:384:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:387:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracNormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = double]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’ unifrac_cmp.cpp:215:78: required from here unifrac_task.cpp:246:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 246 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracUnnormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = double]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’ unifrac_cmp.cpp:218:80: required from here unifrac_task.cpp:64:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 64 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracNormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = float]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’ unifrac_cmp.cpp:227:77: required from here unifrac_task.cpp:246:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 246 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracUnnormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = float]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’ unifrac_cmp.cpp:230:79: required from here unifrac_task.cpp:64:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 64 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:414:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 414 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:380:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:381:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:345:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:346:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:414:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 414 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:380:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:381:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:345:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:346:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:212:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:212:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:215:78: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:218:80: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:215:78: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:221:71: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:218:80: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:221:71: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:224:69: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:224:69: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:227:77: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:230:79: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:227:77: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:233:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:230:79: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:233:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:366:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:366:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:369:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:369:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:372:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:372:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:375:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:375:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:378:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:378:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:381:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:381:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:384:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:384:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:387:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:387:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracNormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = double]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’ unifrac_cmp.cpp:215:78: required from here unifrac_task.cpp:246:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 246 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracNormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = double]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’ unifrac_cmp.cpp:215:78: required from here unifrac_task.cpp:246:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 246 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracUnnormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = double]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’ unifrac_cmp.cpp:218:80: required from here unifrac_task.cpp:64:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 64 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracUnnormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = double]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’ unifrac_cmp.cpp:218:80: required from here unifrac_task.cpp:64:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 64 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracNormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = float]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’ unifrac_cmp.cpp:227:77: required from here unifrac_task.cpp:246:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 246 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracNormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = float]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’ unifrac_cmp.cpp:227:77: required from here unifrac_task.cpp:246:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 246 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracUnnormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = float]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’ unifrac_cmp.cpp:230:79: required from here unifrac_task.cpp:64:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 64 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.cpp: In instantiation of ‘void su_cpu::UnifracUnnormalizedWeightedTask::_run(unsigned int, const TFloat*) [with TFloat = float]’: unifrac_cmp.cpp:175:23: required from ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’ unifrac_cmp.cpp:230:79: required from here unifrac_task.cpp:64:19: warning: unused variable ‘zcheck_k’ [-Wunused-variable] 64 | const bool zcheck_k = zcheck[sk]; // due to loop collapse in ACC, must load in here | ^~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:414:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 414 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:414:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 414 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:380:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:381:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:380:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:381:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:345:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:346:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:345:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:346:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:414:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 414 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:414:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 414 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:380:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:381:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:345:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:346:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:380:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:381:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 381 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:345:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:346:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 346 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ h5c++ -shared -fopenmp -shlib -o libssu.so.0 tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -shlib -Wl,-soname,libssu.so.0 -llapacke -lblas -L/<>/debian/tmp/usr/lib ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -fopenmp -shlib -o libssu.a tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -llapacke -lblas -L/<>/debian/tmp/usr/lib h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib su.cpp -o ssu tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lhdf5_cpp -llz4 -llapacke -lblas -lpthread h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib su.cpp -o ssu tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lhdf5_cpp -llz4 -llapacke -lblas -lpthread h5c++ -shared -fopenmp -shlib -o libssu.so.0 tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -shlib -Wl,-soname,libssu.so.0 -llapacke -lblas -L/<>/debian/tmp/usr/lib ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -fopenmp -shlib -o libssu.a tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -llapacke -lblas -L/<>/debian/tmp/usr/lib make[3]: Leaving directory '/<>/src' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib faithpd.cpp -o faithpd tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lhdf5_cpp -llz4 -llapacke -lblas -lpthread h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -Wall -std=c++11 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib faithpd.cpp -o faithpd tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lhdf5_cpp -llz4 -llapacke -lblas -lpthread cp -a libssu.so* /<>/debian/tmp/usr/lib/ cp ssu faithpd /<>/debian/tmp/usr/bin/ mkdir -p /<>/debian/tmp/usr/include/unifrac cp task_parameters.hpp /<>/debian/tmp/usr/include/unifrac/ cp api.hpp /<>/debian/tmp/usr/include/unifrac/ cp status_enum.hpp /<>/debian/tmp/usr/include/unifrac/ make[3]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' chmod +x /<>/debian/tmp/usr/bin/* make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/<>/debian/tmp/usr/bin ; \ cd ci ; \ ./crawford_test.sh HDF5-DIAG: Error detected in HDF5 (1.10.8) thread 1: #000: ../../../src/H5Dio.c line 173 in H5Dread(): could not get a validated dataspace from file_space_id major: Invalid arguments to routine minor: Bad value #001: ../../../src/H5S.c line 243 in H5S_get_validated_dataspace(): selection + offset not within extent major: Dataspace minor: Out of range terminate called after throwing an instance of 'H5::DataSetIException' ./crawford_test.sh: line 12: 4724 Aborted (core dumped) ssu -i crawford.biom -t crawford.tre -o test.dm -m unweighted make[1]: *** [debian/rules:20: override_dh_auto_test] Error 134 make[1]: Leaving directory '/<>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-11-22T16:06:17Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 21612 Build-Time: 20 Distribution: lunar-proposed Fail-Stage: build Host Architecture: s390x Install-Time: 10 Job: unifrac-tools_1.1.1-4.dsc Machine Architecture: s390x Package: unifrac-tools Package-Time: 31 Source-Version: 1.1.1-4 Space: 21612 Status: attempted Version: 1.1.1-4 -------------------------------------------------------------------------------- Finished at 2022-11-22T16:06:17Z Build needed 00:00:31, 21612k disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24626277 Scanning for processes to kill in build PACKAGEBUILD-24626277