https://launchpad.net/ubuntu/+source/unifrac-tools/1.2-2/+build/25467453 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-084 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_222~591~ubuntu20.04.1 python3-lpbuildd_222~591~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 9 Jan 18:34:53 ntpdate[57416]: adjust time server 10.211.37.1 offset -0.000078 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 --image-type chroot /home/buildd/filecache-default/859743d4aa431be74cb50b11ddbd51d0d1ab094f Creating target for build PACKAGEBUILD-25467453 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 Starting target for build PACKAGEBUILD-25467453 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25467453 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 Updating target for build PACKAGEBUILD-25467453 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 Packages [1312 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe riscv64 Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5885 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 Packages [229 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [102 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 Packages [1054 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [415 kB] Fetched 24.2 MB in 37s (662 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: lsb-base* The following packages will be upgraded: adduser bash binutils binutils-common binutils-riscv64-linux-gnu coreutils cpp-12 debconf diffutils dpkg dpkg-dev g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libasan8 libatomic1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 liblzma5 libmpfr6 libncurses6 libncursesw6 libpcre2-8-0 libperl5.36 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libzstd1 linux-libc-dev ncurses-base ncurses-bin perl perl-base perl-modules-5.36 systemd systemd-sysv sysvinit-utils xz-utils zlib1g 56 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 70.2 MB of archives. After this operation, 3414 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 bash riscv64 5.2.15-2ubuntu1 [672 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 coreutils riscv64 9.1-1ubuntu1 [1310 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 diffutils riscv64 1:3.8-3 [167 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblzma5 riscv64 5.4.0-0.1 [114 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dpkg riscv64 1.21.17ubuntu3 [1291 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 ncurses-bin riscv64 6.4-1 [177 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libperl5.36 riscv64 5.36.0-6 [4196 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl riscv64 5.36.0-6 [235 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl-base riscv64 5.36.0-6 [1649 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcrypt-dev riscv64 1:4.4.33-2 [234 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcrypt1 riscv64 1:4.4.33-2 [93.4 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 zlib1g riscv64 1:1.2.13.dfsg-1ubuntu3 [54.0 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 ncurses-base all 6.4-1 [21.3 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 sysvinit-utils riscv64 3.05-7ubuntu1 [26.4 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 systemd-sysv riscv64 252.1-1ubuntu1 [11.4 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcc1-0 riscv64 12.2.0-12ubuntu1 [42.9 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgomp1 riscv64 12.2.0-12ubuntu1 [111 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libatomic1 riscv64 12.2.0-12ubuntu1 [7856 B] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libasan8 riscv64 12.2.0-12ubuntu1 [2309 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-12-base riscv64 12.2.0-12ubuntu1 [19.4 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libstdc++6 riscv64 12.2.0-12ubuntu1 [674 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 g++-12 riscv64 12.2.0-12ubuntu1 [9557 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libstdc++-12-dev riscv64 12.2.0-12ubuntu1 [4888 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgcc-12-dev riscv64 12.2.0-12ubuntu1 [2633 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-12 riscv64 12.2.0-12ubuntu1 [16.3 MB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 cpp-12 riscv64 12.2.0-12ubuntu1 [8286 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgcc-s1 riscv64 12.2.0-12ubuntu1 [44.1 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libmpfr6 riscv64 4.1.1-3 [249 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libzstd1 riscv64 1.5.2+dfsg2-3 [299 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf-nobfd0 riscv64 2.39.90.20221231-1ubuntu1 [88.5 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf0 riscv64 2.39.90.20221231-1ubuntu1 [87.1 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libbinutils riscv64 2.39.90.20221231-1ubuntu1 [459 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-common riscv64 2.39.90.20221231-1ubuntu1 [218 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils riscv64 2.39.90.20221231-1ubuntu1 [3034 B] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.39.90.20221231-1ubuntu1 [827 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcap2 riscv64 1:2.66-3 [24.9 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 systemd riscv64 252.1-1ubuntu1 [2807 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsystemd-shared riscv64 252.1-1ubuntu1 [1555 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsystemd0 riscv64 252.1-1ubuntu1 [298 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 debconf all 1.5.82 [125 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpcre2-8-0 riscv64 10.42-1 [142 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libncursesw6 riscv64 6.4-1 [128 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libncurses6 riscv64 6.4-1 [93.2 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libtinfo6 riscv64 6.4-1 [90.7 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libudev1 riscv64 252.1-1ubuntu1 [81.3 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main riscv64 adduser all 3.129ubuntu1 [59.0 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpgv riscv64 2.2.40-1ubuntu2 [202 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsqlite3-0 riscv64 3.40.1-1 [583 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 xz-utils riscv64 5.4.0-0.1 [172 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dpkg-dev all 1.21.17ubuntu3 [1070 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libdpkg-perl all 1.21.17ubuntu3 [246 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpg riscv64 2.2.40-1ubuntu2 [491 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpgconf riscv64 2.2.40-1ubuntu2 [119 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpg-agent riscv64 2.2.40-1ubuntu2 [239 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 linux-libc-dev riscv64 5.19.0-23.24 [1314 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.2 MB in 14s (4940 kB/s) (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_riscv64.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_riscv64.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-3_riscv64.deb ... Unpacking diffutils (1:3.8-3) over (1:3.8-1) ... Setting up diffutils (1:3.8-3) ... (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.0-0.1_riscv64.deb ... Unpacking liblzma5:riscv64 (5.4.0-0.1) over (5.2.9-0.0) ... Setting up liblzma5:riscv64 (5.4.0-0.1) ... 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Setting up ncurses-base (6.4-1) ... dpkg: lsb-base: dependency problems, but removing anyway as you requested: sysvinit-utils depends on lsb-base (>= 11.0.0~). procps depends on lsb-base (>= 3.0-10). (Reading database ... 13010 files and directories currently installed.) Removing lsb-base (11.2ubuntu1) ... (Reading database ... 13002 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.05-7ubuntu1_riscv64.deb ... Unpacking sysvinit-utils (3.05-7ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu1) ... (Reading database ... 13005 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_252.1-1ubuntu1_riscv64.deb ... Unpacking systemd-sysv (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../1-libcc1-0_12.2.0-12ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (12.2.0-12ubuntu1) over (12.2.0-10ubuntu1) ... Preparing to unpack .../2-libgomp1_12.2.0-12ubuntu1_riscv64.deb ... 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Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 13028 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25467453 riscv64 lunar-proposed -c chroot:build-PACKAGEBUILD-25467453 --arch=riscv64 --dist=lunar-proposed --nolog unifrac-tools_1.2-2.dsc Initiating build PACKAGEBUILD-25467453 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-084.buildd +==============================================================================+ | unifrac-tools 1.2-2 (riscv64) Mon, 09 Jan 2023 18:40:49 +0000 | +==============================================================================+ Package: unifrac-tools Version: 1.2-2 Source Version: 1.2-2 Distribution: lunar-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25467453/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/unifrac-tools-nwfBEo/resolver-l0nSjz' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- unifrac-tools_1.2-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/unifrac-tools-nwfBEo/unifrac-tools-1.2' with '<>' I: NOTICE: Log filtering will replace 'build/unifrac-tools-nwfBEo' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, libhdf5-dev, hdf5-helpers, liblz4-dev, libblas-dev, liblapacke-dev, chrpath, python3, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-exec, libhdf5-dev, hdf5-helpers, liblz4-dev, libblas-dev, liblapacke-dev, chrpath, python3, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [428 B] Get:5 copy:/<>/apt_archive ./ Packages [503 B] Fetched 1888 B in 0s (4733 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas-dev libblas3 libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblapacke liblapacke-dev libldap2 liblz4-dev libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-minimal python3.11 python3.11-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas-dev libblas3 libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblapacke liblapacke-dev libldap2 liblz4-dev libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu lunar/main riscv64 liblapacke riscv64 3.11.0-2 [355 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main riscv64 libtmglib-dev riscv64 3.11.0-2 [239 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main riscv64 liblapacke-dev riscv64 3.11.0-2 [687 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-exec riscv64 0.27 [24.9 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main riscv64 liblz4-dev riscv64 1.9.4-1 [334 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.2 MB in 11s (4878 kB/s) Selecting previously unselected package libpython3.11-minimal:riscv64. 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Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up hdf5-helpers (1.10.8+repack-1ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build7) ... Setting up libnghttp2-14:riscv64 (1.51.0-1) ... Setting up libmagic1:riscv64 (1:5.41-4) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-2) ... Setting up file (1:5.41-4) ... Setting up libaec0:riscv64 (1.0.6-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:riscv64 (3.11.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libssl-dev:riscv64 (3.0.5-2ubuntu2) ... Setting up autopoint (0.21-10) ... Setting up liblz4-dev:riscv64 (1.9.4-1) ... Setting up libjpeg-turbo8:riscv64 (2.1.2-0ubuntu1) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg-10) ... Setting up libssh-4:riscv64 (0.10.4-2) ... Setting up libgfortran5:riscv64 (12.2.0-12ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up zlib1g-dev:riscv64 (1:1.2.13.dfsg-1ubuntu3) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libmpdec3:riscv64 (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:riscv64 (0.188-2) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.1) ... Setting up libldap2:riscv64 (2.6.3+dfsg-1~exp1ubuntu1) ... Setting up chrpath (0.16-2) ... Setting up libblas-dev:riscv64 (3.11.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up libsz2:riscv64 (1.0.6-1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:riscv64 (0.188-2) ... Setting up libjpeg-turbo8-dev:riscv64 (2.1.2-0ubuntu1) ... Setting up liblapack3:riscv64 (3.11.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libpython3.11-stdlib:riscv64 (3.11.1-2) ... Setting up libaec-dev:riscv64 (1.0.6-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtmglib3:riscv64 (3.11.0-2) ... Setting up liblapack-dev:riscv64 (3.11.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up liblapacke:riscv64 (3.11.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:riscv64 (7.87.0-1ubuntu1) ... Setting up libtmglib-dev:riscv64 (3.11.0-2) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu10) ... Setting up libpython3-stdlib:riscv64 (3.11.1-0ubuntu1) ... Setting up python3.11 (3.11.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu10) ... Setting up python3 (3.11.1-0ubuntu1) ... Setting up liblapacke-dev:riscv64 (3.11.0-2) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcurl4-openssl-dev:riscv64 (7.87.0-1ubuntu1) ... Setting up libhdf5-103-1:riscv64 (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-cpp-103-1:riscv64 (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-hl-100:riscv64 (1.10.8+repack-1ubuntu1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up dh-exec (0.27) ... Setting up libhdf5-hl-cpp-100:riscv64 (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-fortran-102:riscv64 (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-hl-fortran-100:riscv64 (1.10.8+repack-1ubuntu1) ... Setting up libhdf5-dev (1.10.8+repack-1ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (252.1-1ubuntu1) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.39.90.20221231-1ubuntu1 dpkg-dev_1.21.17ubuntu3 g++-12_12.2.0-12ubuntu1 gcc-12_12.2.0-12ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-12ubuntu1 libstdc++6_12.2.0-12ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.39.90.20221231-1ubuntu1 binutils-common_2.39.90.20221231-1ubuntu1 binutils-riscv64-linux-gnu_2.39.90.20221231-1ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 chrpath_0.16-2 coreutils_9.1-1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-12ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.82 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-3 dpkg_1.21.17ubuntu3 dpkg-dev_1.21.17ubuntu3 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-12ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-12ubuntu1 gcc-12-base_12.2.0-12ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 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sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_252.1-1ubuntu1 systemd-sysv_252.1-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022g-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu3 zlib1g-dev_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unifrac-tools Binary: unifrac-tools, libssu0, libssu-dev Architecture: any Version: 1.2-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/biocore/unifrac-binaries Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/unifrac-tools Vcs-Git: https://salsa.debian.org/med-team/unifrac-tools.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-exec, libhdf5-dev, hdf5-helpers, liblz4-dev, libblas-dev, liblapacke-dev, chrpath, python3 Package-List: libssu-dev deb libdevel optional arch=any libssu0 deb libs optional arch=any unifrac-tools deb science optional arch=any Checksums-Sha1: 4dc502c9c738718d5ae01be095c5363e47cafee0 6571933 unifrac-tools_1.2.orig.tar.gz b155cb68612579bfe94b21bac9056e3bf891d1f2 7700 unifrac-tools_1.2-2.debian.tar.xz Checksums-Sha256: 321b2aa67d5c55241b15f5d53e79c6fca125c4f69fd5d26fd3dc2c811ef77b74 6571933 unifrac-tools_1.2.orig.tar.gz 5fc47081adcd4c5bb77665061630471e0ee23618fb1ffe7ed2d24b8f20b5d723 7700 unifrac-tools_1.2-2.debian.tar.xz Files: 714b1b6b89312049c4bbb60fd677d8e5 6571933 unifrac-tools_1.2.orig.tar.gz fe098c3647d46b5e1c265041a82e0846 7700 unifrac-tools_1.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmO7xmQRHHRpbGxlQGRl 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for ./unifrac-tools_1.2-2.dsc: no acceptable signature found dpkg-source: info: extracting unifrac-tools in /<> dpkg-source: info: unpacking unifrac-tools_1.2.orig.tar.gz dpkg-source: info: unpacking unifrac-tools_1.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_non-free_headers.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying soname.patch dpkg-source: info: applying baseline.patch dpkg-source: info: applying enable_linking_to_shared_hdf5_lib.patch dpkg-source: info: applying enable-debug-flag.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25467453 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25467453 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25467453 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package unifrac-tools dpkg-buildpackage: info: source version 1.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel make -j1 clean make[1]: Entering directory '/<>' cd test && make clean make[2]: Entering directory '/<>/test' rm -f *.o capi_test make[2]: Leaving directory '/<>/test' cd src && make clean make[2]: Entering directory '/<>/src' rm -f *.o ssu faithpd test_su test_ska test_api libssu.so make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a -O--no-parallel dh_autoreconf -a -O--no-parallel dh_auto_configure -a -O--no-parallel debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/bin mkdir -p /<>/debian/tmp/usr/lib dh_auto_build -- PREFIX=/<>/debian/tmp/usr make -j1 "INSTALL=install --strip-program=true" PREFIX=/<>/debian/tmp/usr make[2]: Entering directory '/<>' cd src && make api make[3]: Entering directory '/<>/src' h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c tree.cpp -o tree.o tree.cpp: In function ‘std::string& rtrim(std::string&)’: tree.cpp:374:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 374 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from tree.hpp:13, from tree.cpp:1: /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c biom.cpp -o biom.o biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:30:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 30 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:14, from biom.cpp:13: /usr/include/hdf5/serial/H5File.h:105:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 105 | H5File(const H5File &original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47: /usr/include/hdf5/serial/H5Group.h:63:5: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 63 | Group(const Group &original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:30:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 30 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp: In constructor ‘su::biom::biom(const char* const*, const char* const*, uint32_t*, uint32_t*, double*, int, int, int)’: biom.cpp:176:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 176 | for(unsigned int i = 0; i < n_obs; i++) { | ~~^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:224:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 224 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 225 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:256:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 256 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 257 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:305:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 305 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 306 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:311:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 311 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 312 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(const std::string&, uint32_t*&, double*&)’: biom.cpp:412:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 412 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 413 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:418:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 418 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 419 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In instantiation of ‘void su::biom::get_obs_data_range_TT(const std::string&, unsigned int, unsigned int, bool, TFloat*) const [with TFloat = double; std::string = std::__cxx11::basic_string]’: biom.cpp:377:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j]’: biom.cpp:381:30: required from here biom.cpp:362:15: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘unsigned int’ [-Wsign-compare] 362 | if ((j>=start)&&(j=start)&&(j>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:13: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC api.cpp: In function ‘compute_status one_off_inmem_cpp(su::biom&, su::BPTree&, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:425:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 425 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:84:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 84 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:92:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 92 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:456:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 456 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:467:75: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 467 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n", dm_stripes.size()); | ~^ ~~~~~~~~~~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:84:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 84 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:92:62: note: in expansion of macro ‘PARSE_TREE_TABLE’ 92 | #define PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) PARSE_TREE_TABLE(tree_filename, table_filename) \ | ^~~~~~~~~~~~~~~~ api.cpp:495:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 495 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:84:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 84 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:513:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 513 | PARSE_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp64_t**)’: api.cpp:84:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 84 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:591:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 591 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off_matrix_fp32(const char*, const char*, const char*, bool, double, bool, unsigned int, const char*, mat_full_fp32_t**)’: api.cpp:84:76: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 84 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:604:5: note: in expansion of macro ‘PARSE_TREE_TABLE’ 604 | PARSE_TREE_TABLE(tree_filename, biom_filename) | ^~~~~~~~~~~~~~~~ api.cpp: In function ‘IOStatus read_partial_header_fd(int, TPMat&)’: api.cpp:1166:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 1166 | if(n_samples <= 0 || n_stripes <= 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp: In instantiation of ‘IOStatus read_partial_header_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1334:48: required from here api.cpp:1166:83: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] api.cpp:1192:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1192 | if (cnt != sample_id_length_compressed) {free(cmp_buf); return magic_incompatible;} | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1198:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1198 | if (cnt!=sample_id_length) {free(samples_buf); free(cmp_buf); return magic_incompatible;} | ~~~^~~~~~~~~~~~~~~~~~ api.cpp:1202:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1202 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp: In instantiation of ‘IOStatus read_partial_data_fd(int, TPMat&) [with TPMat = partial_mat; IOStatus = io_status]’: api.cpp:1336:49: required from here api.cpp:1235:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1235 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:1239:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1239 | if ( (i+1)n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1448:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1448 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1463:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1463 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In instantiation of ‘MergeStatus check_partial(const TPMat* const*, int, bool) [with TPMat = partial_mat; MergeStatus = merge_status]’: api.cpp:1480:36: required from here api.cpp:1413:39: warning: comparison of integer expressions of different signedness: ‘const uint32_t’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare] 1413 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:1448:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1448 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:1463:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 1463 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = double; TMat = mat_full_fp64]’: api.cpp:240:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | ftruncate(fd,msize); | ~~~~~~~~~^~~~~~~~~~ api.cpp: In function ‘void initialize_mat_full_no_biom_T(TMat*&, const char* const*, unsigned int, const char*) [with TReal = float; TMat = mat_full_fp32]’: api.cpp:240:18: warning: ignoring return value of ‘int ftruncate(int, __off_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_internal.cpp -o unifrac_internal.o In file included from unifrac_internal.cpp:12: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ affinity.hpp: At global scope: affinity.hpp:82:12: warning: ‘int bind_to_core(int)’ defined but not used [-Wunused-function] 82 | static int bind_to_core(int core) { | ^~~~~~~~~~~~ h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib -c unifrac_cmp.cpp -o unifrac_cmp_cpu.o In file included from unifrac_cmp.cpp:19: unifrac_task.hpp:194: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 194 | #pragma acc enter data create(buf[:bsize]) | unifrac_task.hpp:355: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 355 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:393: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 393 | #pragma acc enter data create(zcheck[:n_samples],sums[:n_samples]) | unifrac_task.hpp:436: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 436 | #pragma acc enter data create(zcheck[:n_samples],stripe_sums[:n_samples],sums[:bsize]) | In file included from unifrac_cmp.cpp:24: unifrac_task.cpp:41: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 41 | #pragma acc loop seq | unifrac_task.cpp:558: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 558 | #pragma acc loop seq | unifrac_task.cpp:1008: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1008 | #pragma acc loop seq | unifrac_task.cpp:1081: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1081 | #pragma acc loop seq | unifrac_task.cpp:1159: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1159 | #pragma acc loop seq | unifrac_task.cpp:1544: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1544 | #pragma acc loop vector | unifrac_task.cpp:1573: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1573 | #pragma acc loop vector | unifrac_task.cpp:1586: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 1586 | #pragma acc wait | unifrac_task.cpp:1700: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1700 | #pragma acc loop seq | unifrac_task.cpp:1710: warning: ignoring ‘#pragma acc loop’ [-Wunknown-pragmas] 1710 | #pragma acc loop seq | unifrac_cmp.cpp:83: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 83 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:181: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 181 | #pragma acc wait | unifrac_cmp.cpp:190: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 190 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:200: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 200 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:268: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 268 | #pragma acc enter data copyin(sample_total_counts[:n_samples_r]) | unifrac_cmp.cpp:279: warning: ignoring ‘#pragma acc enter’ [-Wunknown-pragmas] 279 | #pragma acc enter data create(lengths[:max_emb]) | unifrac_cmp.cpp:324: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 324 | #pragma acc wait | unifrac_cmp.cpp:325: warning: ignoring ‘#pragma acc update’ [-Wunknown-pragmas] 325 | #pragma acc update device(lengths[:filled_emb]) | unifrac_cmp.cpp:333: warning: ignoring ‘#pragma acc wait’ [-Wunknown-pragmas] 333 | #pragma acc wait | unifrac_cmp.cpp:341: warning: ignoring ‘#pragma acc parallel’ [-Wunknown-pragmas] 341 | #pragma acc parallel loop collapse(2) present(dm_stripes_buf,dm_stripes_total_buf) | unifrac_cmp.cpp:352: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 352 | #pragma acc exit data delete(lengths[:max_emb]) | unifrac_cmp.cpp:353: warning: ignoring ‘#pragma acc exit’ [-Wunknown-pragmas] 353 | #pragma acc exit data delete(sample_total_counts[:n_samples_r]) | unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:212:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:215:78: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:218:80: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:221:71: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:224:69: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:227:77: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:230:79: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifracTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:233:70: required from here unifrac_cmp.cpp:80:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 80 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = double]’: unifrac_cmp.cpp:366:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:369:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = double]’: unifrac_cmp.cpp:372:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = double]’: unifrac_cmp.cpp:375:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnweightedTask; TFloat = float]’: unifrac_cmp.cpp:378:77: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawNormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:381:85: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawUnnormalizedWeightedTask; TFloat = float]’: unifrac_cmp.cpp:384:87: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_cmp.cpp: In instantiation of ‘void unifrac_vawTT(const su::biom_interface&, const su::BPTree&, bool, std::vector&, std::vector&, const su::task_parameters*) [with TaskT = su_cpu::UnifracVawGeneralizedTask; TFloat = float]’: unifrac_cmp.cpp:387:78: required from here unifrac_cmp.cpp:276:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] 276 | fprintf(stderr, "posix_memalign(%d) failed: %d\n", sizeof(TFloat) * max_emb, err); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long unsigned int | %ld unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:433:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 433 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:434:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 434 | posix_memalign((void **)&stripe_sums, 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:435:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:391:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 391 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:392:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 392 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = double]’: unifrac_task.hpp:353:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 353 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:354:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnweightedTask::UnifracUnweightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:433:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 433 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:434:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 434 | posix_memalign((void **)&stripe_sums, 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:435:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | posix_memalign((void **)&sums, 4096, sizeof(TFloat) * bsize); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracNormalizedWeightedTask::UnifracNormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:391:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 391 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:392:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 392 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp: In constructor ‘su_cpu::UnifracUnnormalizedWeightedTask::UnifracUnnormalizedWeightedTask(std::vector&, std::vector&, unsigned int, const su::task_parameters*) [with TFloat = float]’: unifrac_task.hpp:353:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 353 | posix_memalign((void **)&zcheck, 4096, sizeof(bool) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unifrac_task.hpp:354:25: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | posix_memalign((void **)&sums , 4096, sizeof(TFloat) * n_samples); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ h5c++ -shared -fopenmp -shlib -o libssu.so.0 tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -shlib -Wl,-soname,libssu.so.0 -llapacke -lblas -L/<>/debian/tmp/usr/lib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5 ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -fopenmp -shlib -o libssu.a tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -llapacke -lblas -L/<>/debian/tmp/usr/lib make[3]: Leaving directory '/<>/src' cd src && make main make[3]: Entering directory '/<>/src' h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib su.cpp -o ssu tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lhdf5_cpp -llz4 -llapacke -lblas -lpthread h5c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wextra -Wno-unused-parameter -g -Wall -std=c++14 -pedantic -I. -O4 -fPIC -L/<>/debian/tmp/usr/lib faithpd.cpp -o faithpd tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lhdf5_cpp -llz4 -llapacke -lblas -lpthread make[3]: Leaving directory '/<>/src' cd src && make install make[3]: Entering directory '/<>/src' cp -a libssu.so* /<>/debian/tmp/usr/lib/ cp ssu faithpd /<>/debian/tmp/usr/bin/ mkdir -p /<>/debian/tmp/usr/include/unifrac cp task_parameters.hpp /<>/debian/tmp/usr/include/unifrac/ cp api.hpp /<>/debian/tmp/usr/include/unifrac/ cp status_enum.hpp /<>/debian/tmp/usr/include/unifrac/ make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' chmod +x /<>/debian/tmp/usr/bin/* make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--no-parallel dh_prep -a -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/bin mkdir -p /<>/debian/tmp/usr/lib dh_auto_install -- PREFIX=/<>/debian/tmp/usr make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/<>/debian/tmp/usr make[2]: Entering directory '/<>' cd src && make install make[3]: Entering directory '/<>/src' cp -a libssu.so* /<>/debian/tmp/usr/lib/ cp ssu faithpd /<>/debian/tmp/usr/bin/ mkdir -p /<>/debian/tmp/usr/include/unifrac cp task_parameters.hpp /<>/debian/tmp/usr/include/unifrac/ cp api.hpp /<>/debian/tmp/usr/include/unifrac/ cp status_enum.hpp /<>/debian/tmp/usr/include/unifrac/ make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' chrpath -d debian/tmp/usr/bin/ssu chrpath -d debian/tmp/usr/bin/faithpd chrpath -d debian/tmp/usr/lib/libssu.so* dh_install make[1]: Leaving directory '/<>' dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installman -a -O--no-parallel dh_installsystemduser -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel dh_compress -a -O--no-parallel dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel debugedit: debian/unifrac-tools/usr/bin/ssu: Unknown DWARF DW_FORM_0x1f20 bc8cab6909f2ddf34d55c9efe62e61918bf9b0e8 0bb8b921d851ee911ea20cd1f09f97abd83b88c0 debugedit: debian/unifrac-tools/usr/bin/faithpd: Unknown DWARF DW_FORM_0x1f20 839cffa336cc01a5434dd17bcb320152afe4462e dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -a -O--no-parallel dh_gencontrol -a -O--no-parallel dpkg-gencontrol: warning: Depends field of package libssu-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--no-parallel dh_builddeb -a -O--no-parallel INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libssu-dev (in debian/libssu-dev); do_strip: , oemstrip: pkgstriptranslations: processing unifrac-tools-dbgsym (in debian/.debhelper/unifrac-tools/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing unifrac-tools (in debian/unifrac-tools); do_strip: , oemstrip: pkgstriptranslations: processing libssu0 (in debian/libssu0); do_strip: , oemstrip: pkgstriptranslations: processing libssu0-dbgsym (in debian/.debhelper/libssu0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/unifrac-tools/dbgsym-root/DEBIAN/control, package unifrac-tools-dbgsym, directory debian/.debhelper/unifrac-tools/dbgsym-root dpkg-deb: building package 'unifrac-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-unifrac-tools/unifrac-tools-dbgsym_1.2-2_riscv64.deb'. pkgstripfiles: processing control file: debian/.debhelper/libssu0/dbgsym-root/DEBIAN/control, package libssu0-dbgsym, directory debian/.debhelper/libssu0/dbgsym-root dpkg-deb: building package 'libssu0-dbgsym' in 'debian/.debhelper/scratch-space/build-libssu0/libssu0-dbgsym_1.2-2_riscv64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Renaming libssu0-dbgsym_1.2-2_riscv64.deb to libssu0-dbgsym_1.2-2_riscv64.ddeb pkgstripfiles: processing control file: debian/libssu-dev/DEBIAN/control, package libssu-dev, directory debian/libssu-dev INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... Renaming unifrac-tools-dbgsym_1.2-2_riscv64.deb to unifrac-tools-dbgsym_1.2-2_riscv64.ddeb INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... pkgstripfiles: processing control file: debian/unifrac-tools/DEBIAN/control, package unifrac-tools, directory debian/unifrac-tools Searching for duplicated docs in dependency libssu0... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... symlinking changelog.Debian.gz in unifrac-tools to file in libssu0 pkgstripfiles: Running PNG optimization (using 8 cpus) for package unifrac-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'unifrac-tools' in '../unifrac-tools_1.2-2_riscv64.deb'. INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... INFO: pkgstripfiles: waiting for lock (libssu-dev) ... pkgstripfiles: processing control file: debian/libssu0/DEBIAN/control, package libssu0, directory debian/libssu0 pkgstripfiles: Running PNG optimization (using 8 cpus) for package libssu0 ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (libssu-dev) ... dpkg-deb: building package 'libssu0' in '../libssu0_1.2-2_riscv64.deb'. Searching for duplicated docs in dependency libssu0... symlinking changelog.Debian.gz in libssu-dev to file in libssu0 pkgstripfiles: Running PNG optimization (using 8 cpus) for package libssu-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libssu-dev' in '../libssu-dev_1.2-2_riscv64.deb'. dpkg-genbuildinfo --build=any -O../unifrac-tools_1.2-2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../unifrac-tools_1.2-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-01-09T18:56:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ unifrac-tools_1.2-2_riscv64.changes: ------------------------------------ Format: 1.8 Date: Mon, 09 Jan 2023 08:31:31 +0100 Source: unifrac-tools Binary: libssu-dev libssu0 unifrac-tools Built-For-Profiles: noudeb Architecture: riscv64 Version: 1.2-2 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libssu-dev - high-performance phylogenetic diversity calculations (dev) libssu0 - high-performance phylogenetic diversity calculations (lib) unifrac-tools - high-performance phylogenetic diversity calculations (binaries) Closes: 1028051 Changes: unifrac-tools (1.2-2) unstable; urgency=medium . * Sneak in CFLAGS via CPPFLAGS to work around missing support of CLFAGS in upstream Makefile Closes: #1028051 Checksums-Sha1: bf1b6d44dee64ee05a088ed8a8f2cda6cd99c6fa 7260 libssu-dev_1.2-2_riscv64.deb 85d1885a2ea9d030bac9ccd8944e937fbaafc1fa 852230 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unifrac-tools_1.2-2_riscv64.deb Files: 788f3db79d806b8c51b83a3b375a7675 7260 libdevel optional libssu-dev_1.2-2_riscv64.deb 34ef775e2739636e19bac1cf2b329c3f 852230 debug optional libssu0-dbgsym_1.2-2_riscv64.ddeb 2f576e8c5e5906cd6e42fc71a9fd9acc 107116 libs optional libssu0_1.2-2_riscv64.deb 6bed6b538fbf448626a5831f1d670c51 1655190 debug optional unifrac-tools-dbgsym_1.2-2_riscv64.ddeb 30928ab5eaea2589f6720e4f77d72b9f 8282 science optional unifrac-tools_1.2-2_riscv64.buildinfo 3dc85289b51bcedf771f7f61839faff9 1786906 science optional unifrac-tools_1.2-2_riscv64.deb /<>/unifrac-tools_1.2-2_riscv64.changes.new could not be renamed to /<>/unifrac-tools_1.2-2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: unifrac-tools Binary: libssu-dev libssu0 libssu0-dbgsym unifrac-tools unifrac-tools-dbgsym Architecture: riscv64 Version: 1.2-2 Checksums-Md5: 788f3db79d806b8c51b83a3b375a7675 7260 libssu-dev_1.2-2_riscv64.deb 34ef775e2739636e19bac1cf2b329c3f 852230 libssu0-dbgsym_1.2-2_riscv64.ddeb 2f576e8c5e5906cd6e42fc71a9fd9acc 107116 libssu0_1.2-2_riscv64.deb 6bed6b538fbf448626a5831f1d670c51 1655190 unifrac-tools-dbgsym_1.2-2_riscv64.ddeb 3dc85289b51bcedf771f7f61839faff9 1786906 unifrac-tools_1.2-2_riscv64.deb Checksums-Sha1: bf1b6d44dee64ee05a088ed8a8f2cda6cd99c6fa 7260 libssu-dev_1.2-2_riscv64.deb 85d1885a2ea9d030bac9ccd8944e937fbaafc1fa 852230 libssu0-dbgsym_1.2-2_riscv64.ddeb 2fc30631d9d129749d31a2997d0ae366a1b64b1b 107116 libssu0_1.2-2_riscv64.deb 1d9f3f7456a1d68055d1ee7f83aa621dfd30fbcb 1655190 unifrac-tools-dbgsym_1.2-2_riscv64.ddeb 9a00268123a0b3da1deb3cf76dfacbe61017fced 1786906 unifrac-tools_1.2-2_riscv64.deb Checksums-Sha256: e150a065dbb8529923700bfd009ce576d0f1e783a18d543b05c984a5e0fb1adb 7260 libssu-dev_1.2-2_riscv64.deb 9a6e55192a29374d53f8745457a9743785b1936fa0ce160e9cfc6a3cb34efda8 852230 libssu0-dbgsym_1.2-2_riscv64.ddeb 7791e4b8e9edca483064135c8ca4f1ac8a3b9e4ab1ebda2560e4ec08f860c546 107116 libssu0_1.2-2_riscv64.deb 6e1fae3f7eb3cfa6522fb842174cfdf25fc80984ab061fc6b931c202609a6a7b 1655190 unifrac-tools-dbgsym_1.2-2_riscv64.ddeb 501811d83d8b85b79695d6c772ca19248fb4d73771943db56d6b5dc80a3ab13c 1786906 unifrac-tools_1.2-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Mon, 09 Jan 2023 18:56:53 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.39.90.20221231-1ubuntu1), binutils-common (= 2.39.90.20221231-1ubuntu1), binutils-riscv64-linux-gnu (= 2.39.90.20221231-1ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), chrpath (= 0.16-2), coreutils (= 9.1-1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.82), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-exec (= 0.27), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-3), dpkg (= 1.21.17ubuntu3), dpkg-dev (= 1.21.17ubuntu3), dwz (= 0.15-1), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-12ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-12ubuntu1), gcc-12-base (= 12.2.0-12ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hdf5-helpers (= 1.10.8+repack-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-2), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-12ubuntu1), libatomic1 (= 12.2.0-12ubuntu1), libattr1 (= 1:2.5.1-3), libaudit-common (= 1:3.0.7-1ubuntu3), libaudit1 (= 1:3.0.7-1ubuntu3), libbinutils (= 2.39.90.20221231-1ubuntu1), libblas-dev (= 3.11.0-2), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.66-3), libcc1-0 (= 12.2.0-12ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.39.90.20221231-1ubuntu1), libctf0 (= 2.39.90.20221231-1ubuntu1), libcurl4 (= 7.87.0-1ubuntu1), libcurl4-openssl-dev (= 7.87.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdpkg-perl (= 1.21.17ubuntu3), libdw1 (= 0.188-2), libelf1 (= 0.188-2), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.0-2), libgcc-12-dev (= 12.2.0-12ubuntu1), libgcc-s1 (= 12.2.0-12ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 12.2.0-12ubuntu1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-12ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-1build1), libhdf5-103-1 (= 1.10.8+repack-1ubuntu1), libhdf5-cpp-103-1 (= 1.10.8+repack-1ubuntu1), libhdf5-dev (= 1.10.8+repack-1ubuntu1), libhdf5-fortran-102 (= 1.10.8+repack-1ubuntu1), libhdf5-hl-100 (= 1.10.8+repack-1ubuntu1), libhdf5-hl-cpp-100 (= 1.10.8+repack-1ubuntu1), libhdf5-hl-fortran-100 (= 1.10.8+repack-1ubuntu1), libhogweed6 (= 3.8.1-2), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libjansson4 (= 2.14-2), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libk5crypto3 (= 1.20.1-1build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1build1), libkrb5support0 (= 1.20.1-1build1), liblapack-dev (= 3.11.0-2), liblapack3 (= 3.11.0-2), liblapacke (= 3.11.0-2), liblapacke-dev (= 3.11.0-2), libldap2 (= 2.6.3+dfsg-1~exp1ubuntu1), liblz4-1 (= 1.9.4-1), liblz4-dev (= 1.9.4-1), liblzma5 (= 5.4.0-0.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.3.1-1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.1-3), libncursesw6 (= 6.4-1), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.51.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-6), libpipeline1 (= 1.5.7-1), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.11.1-0ubuntu1), libpython3.11-minimal (= 3.11.1-2), libpython3.11-stdlib (= 3.11.1-2), libreadline8 (= 8.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-10), libsasl2-modules-db (= 2.1.28+dfsg-10), libselinux1 (= 3.4-1build1), libsmartcols1 (= 2.38.1-4ubuntu1), libsqlite3-0 (= 3.40.1-1), libssh-4 (= 0.10.4-2), libssl-dev (= 3.0.5-2ubuntu2), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-12ubuntu1), libstdc++6 (= 12.2.0-12ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.1-1ubuntu1), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.19.0-2), libtinfo6 (= 6.4-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtmglib-dev (= 3.11.0-2), libtmglib3 (= 3.11.0-2), libtool (= 2.4.7-5), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.1-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 37), m4 (= 1.4.19-2), make (= 4.3-4.1build1), man-db (= 2.11.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.4-1), ncurses-bin (= 6.4-1), patch (= 2.7.6-7build2), perl (= 5.36.0-6), perl-base (= 5.36.0-6), perl-modules-5.36 (= 5.36.0-6), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.1-0ubuntu1), python3-minimal (= 3.11.1-0ubuntu1), python3.11 (= 3.11.1-2), python3.11-minimal (= 3.11.1-2), readline-common (= 8.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.4.0-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu3), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1673249491" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libssu-dev_1.2-2_riscv64.deb ---------------------------- new Debian package, version 2.0. size 7260 bytes: control archive=896 bytes. 1114 bytes, 24 lines control 275 bytes, 4 lines md5sums Package: libssu-dev Source: unifrac-tools Version: 1.2-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 45 Depends: libssu0 (= 1.2-2) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/biocore/unifrac-binaries Description: high-performance phylogenetic diversity calculations (dev) The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the static library and header files. drwxr-xr-x root/root 0 2023-01-09 07:31 ./ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/include/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/include/unifrac/ -rw-r--r-- root/root 27637 2023-01-09 07:31 ./usr/include/unifrac/api.hpp -rw-r--r-- root/root 529 2023-01-09 07:31 ./usr/include/unifrac/status_enum.hpp -rw-r--r-- root/root 1098 2023-01-09 07:31 ./usr/include/unifrac/task_parameters.hpp drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/lib/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2023-01-09 07:31 ./usr/lib/riscv64-linux-gnu/libssu.so -> libssu.so.0 drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/doc/libssu-dev/ lrwxrwxrwx root/root 0 2023-01-09 07:31 ./usr/share/doc/libssu-dev/changelog.Debian.gz -> ../libssu0/changelog.Debian.gz -rw-r--r-- root/root 2852 2023-01-09 07:31 ./usr/share/doc/libssu-dev/copyright libssu0_1.2-2_riscv64.deb ------------------------- new Debian package, version 2.0. size 107116 bytes: control archive=1046 bytes. 1265 bytes, 24 lines control 214 bytes, 3 lines md5sums 26 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libssu0 Source: unifrac-tools Version: 1.2-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 275 Depends: libblas3 | libblas.so.3, libc6 (>= 2.27), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.8), liblapacke (>= 3.11.0), liblz4-1 (>= 0.0~r130), libstdc++6 (>= 11) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/biocore/unifrac-binaries Description: high-performance phylogenetic diversity calculations (lib) The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the shared library. drwxr-xr-x root/root 0 2023-01-09 07:31 ./ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/lib/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/lib/riscv64-linux-gnu/ -rw-r--r-- root/root 267136 2023-01-09 07:31 ./usr/lib/riscv64-linux-gnu/libssu.so.0 drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/doc/libssu0/ -rw-r--r-- root/root 801 2023-01-09 07:31 ./usr/share/doc/libssu0/changelog.Debian.gz -rw-r--r-- root/root 2852 2023-01-09 07:31 ./usr/share/doc/libssu0/copyright unifrac-tools_1.2-2_riscv64.deb ------------------------------- new Debian package, version 2.0. size 1786906 bytes: control archive=996 bytes. 1326 bytes, 25 lines control 296 bytes, 5 lines md5sums Package: unifrac-tools Version: 1.2-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6178 Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), libgcc-s1 (>= 4.2), libgomp1 (>= 6), liblapacke (>= 3.11.0), liblz4-1 (>= 0.0~r130), libstdc++6 (>= 11), libsz2 (>= 1.0.6), zlib1g (>= 1:1.1.4), libssu0 Conflicts: libssu-tools Replaces: libssu-tools Provides: libssu-tools Section: science Priority: optional Homepage: https://github.com/biocore/unifrac-binaries Description: high-performance phylogenetic diversity calculations (binaries) The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains target binaries ssu and faithpd drwxr-xr-x root/root 0 2023-01-09 07:31 ./ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/bin/ -rwxr-xr-x root/root 3142184 2023-01-09 07:31 ./usr/bin/faithpd -rwxr-xr-x root/root 3166840 2023-01-09 07:31 ./usr/bin/ssu drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/doc/unifrac-tools/ lrwxrwxrwx root/root 0 2023-01-09 07:31 ./usr/share/doc/unifrac-tools/changelog.Debian.gz -> ../libssu0/changelog.Debian.gz -rw-r--r-- root/root 2852 2023-01-09 07:31 ./usr/share/doc/unifrac-tools/copyright drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/man/ drwxr-xr-x root/root 0 2023-01-09 07:31 ./usr/share/man/man1/ -rw-r--r-- root/root 456 2023-01-09 07:31 ./usr/share/man/man1/faithpd.1.gz -rw-r--r-- root/root 1330 2023-01-09 07:31 ./usr/share/man/man1/ssu.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 86556 Build-Time: 707 Distribution: lunar-proposed Host Architecture: riscv64 Install-Time: 239 Job: unifrac-tools_1.2-2.dsc Machine Architecture: riscv64 Package: unifrac-tools Package-Time: 970 Source-Version: 1.2-2 Space: 86556 Status: successful Version: 1.2-2 -------------------------------------------------------------------------------- Finished at 2023-01-09T18:56:59Z Build needed 00:16:10, 86556k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 Scanning for processes to kill in build PACKAGEBUILD-25467453 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 Stopping target for build PACKAGEBUILD-25467453 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25467453 Removing build PACKAGEBUILD-25467453