https://launchpad.net/ubuntu/+source/unifrac/0.10.0-3/+build/22312174 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-006 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:53:41 UTC 2021 ppc64le Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 30 Nov 12:25:08 ntpdate[2272]: adjust time server 10.211.37.1 offset -0.007708 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22312174 --image-type chroot /home/buildd/filecache-default/104362a8a1d4d9793492e39ad0c0e733056a927b Creating target for build PACKAGEBUILD-22312174 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22312174 Starting target for build PACKAGEBUILD-22312174 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22312174 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22312174 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22312174 Updating target for build PACKAGEBUILD-22312174 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el Packages [1357 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe ppc64el Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5561 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el Packages [191 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [67.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el Packages [1047 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [490 kB] Fetched 22.8 MB in 4s (5153 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libtsan0 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils tzdata usrmerge util-linux 93 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 72.5 MB of archives. After this operation, 330 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main ppc64el debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libpam0g ppc64el 1.4.0-10ubuntu1 [69.3 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libcrypt-dev ppc64el 1:4.4.26-1 [142 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libcrypt1 ppc64el 1:4.4.26-1 [108 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el base-files ppc64el 12ubuntu2 [63.4 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main ppc64el bsdutils ppc64el 1:2.37.2-4ubuntu1 [86.7 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main ppc64el debianutils ppc64el 5.5-1 [78.2 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main ppc64el dash ppc64el 0.5.11+git20210903+057cd650a4ed-3 [111 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main ppc64el grep ppc64el 3.7-1 [167 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main ppc64el login ppc64el 1:4.8.1-1ubuntu10 [191 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main ppc64el libncurses6 ppc64el 6.3-1 [145 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main ppc64el libncursesw6 ppc64el 6.3-1 [183 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtinfo6 ppc64el 6.3-1 [129 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main ppc64el ncurses-bin ppc64el 6.3-1 [196 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el sed ppc64el 4.8-1 [204 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main ppc64el libblkid1 ppc64el 2.37.2-4ubuntu1 [132 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpcre2-8-0 ppc64el 10.39-3 [249 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main ppc64el libselinux1 ppc64el 3.3-1 [94.5 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmount1 ppc64el 2.37.2-4ubuntu1 [148 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main ppc64el util-linux ppc64el 2.37.2-4ubuntu1 [1134 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main ppc64el ncurses-base all 6.3-1 [19.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgpg-error0 ppc64el 1.42-3 [84.4 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcrypt20 ppc64el 1.9.4-3ubuntu2 [697 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcc1-0 ppc64el 11.2.0-12ubuntu1 [48.1 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-11-base ppc64el 11.2.0-12ubuntu1 [20.7 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcc-s1 ppc64el 11.2.0-12ubuntu1 [34.7 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgomp1 ppc64el 11.2.0-12ubuntu1 [130 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main ppc64el libitm1 ppc64el 11.2.0-12ubuntu1 [33.1 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main ppc64el libatomic1 ppc64el 11.2.0-12ubuntu1 [10.7 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main ppc64el libasan6 ppc64el 11.2.0-12ubuntu1 [2301 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main ppc64el liblsan0 ppc64el 11.2.0-12ubuntu1 [997 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtsan0 ppc64el 11.2.0-12ubuntu1 [2285 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main ppc64el libubsan1 ppc64el 11.2.0-12ubuntu1 [947 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main ppc64el libquadmath0 ppc64el 11.2.0-12ubuntu1 [166 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main ppc64el g++-11 ppc64el 11.2.0-12ubuntu1 [10.2 MB] Get:36 http://ftpmaster.internal/ubuntu jammy/main ppc64el libstdc++-11-dev ppc64el 11.2.0-12ubuntu1 [2219 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcc-11-dev ppc64el 11.2.0-12ubuntu1 [1490 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-11 ppc64el 11.2.0-12ubuntu1 [17.7 MB] Get:39 http://ftpmaster.internal/ubuntu jammy/main ppc64el cpp-11 ppc64el 11.2.0-12ubuntu1 [8812 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main ppc64el libstdc++6 ppc64el 11.2.0-12ubuntu1 [760 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main ppc64el libisl23 ppc64el 0.24-2 [835 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmpc3 ppc64el 1.2.1-1 [52.9 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-3 [364 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main ppc64el libctf0 ppc64el 2.37-10ubuntu1 [109 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main ppc64el libctf-nobfd0 ppc64el 2.37-10ubuntu1 [108 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main ppc64el libbinutils ppc64el 2.37-10ubuntu1 [670 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main ppc64el binutils-common ppc64el 2.37-10ubuntu1 [213 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main ppc64el binutils ppc64el 2.37-10ubuntu1 [3170 B] Get:49 http://ftpmaster.internal/ubuntu jammy/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.37-10ubuntu1 [2430 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main ppc64el libapt-pkg6.0 ppc64el 2.3.13 [1031 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpgv ppc64el 2.2.27-2ubuntu1 [176 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main ppc64el libidn2-0 ppc64el 2.3.2-2 [70.4 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main ppc64el libp11-kit0 ppc64el 0.24.0-5 [264 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtasn1-6 ppc64el 4.18.0-4 [55.8 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgnutls30 ppc64el 3.7.2-2ubuntu1 [1021 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main ppc64el libseccomp2 ppc64el 2.5.2-2ubuntu2 [60.1 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main ppc64el apt ppc64el 2.3.13 [1435 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsepol2 ppc64el 3.3-1 [370 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsemanage-common all 3.3-1 [10.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsemanage2 ppc64el 3.3-1 [114 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main ppc64el passwd ppc64el 1:4.8.1-1ubuntu10 [781 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libpam-modules-bin ppc64el 1.4.0-10ubuntu1 [45.0 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libpam-modules ppc64el 1.4.0-10ubuntu1 [326 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main ppc64el logsave ppc64el 1.46.4-1ubuntu1 [11.5 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main ppc64el libext2fs2 ppc64el 1.46.4-1ubuntu1 [255 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main ppc64el e2fsprogs ppc64el 1.46.4-1ubuntu1 [650 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main ppc64el mount ppc64el 2.37.2-4ubuntu1 [121 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main ppc64el libattr1 ppc64el 1:2.5.1-1 [14.3 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcom-err2 ppc64el 1.46.4-1ubuntu1 [10.7 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main ppc64el libk5crypto3 ppc64el 1.18.3-7 [117 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkrb5support0 ppc64el 1.18.3-7 [37.6 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkrb5-3 ppc64el 1.18.3-7 [436 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgssapi-krb5-2 ppc64el 1.18.3-7 [183 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsmartcols1 ppc64el 2.37.2-4ubuntu1 [63.0 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main ppc64el libuuid1 ppc64el 2.37.2-4ubuntu1 [27.1 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main ppc64el libss2 ppc64el 1.46.4-1ubuntu1 [13.7 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main ppc64el sensible-utils all 0.0.17 [20.1 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main ppc64el usrmerge all 25ubuntu2 [54.7 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libssl3 ppc64el 3.0.0-1ubuntu1 [2147 kB] Get:81 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el openssl ppc64el 3.0.0-1ubuntu1 [1191 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main ppc64el ca-certificates all 20211016 [148 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main ppc64el libapparmor1 ppc64el 3.0.3-0ubuntu3 [43.9 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main ppc64el libip4tc2 ppc64el 1.8.7-1ubuntu4 [24.0 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libkmod2 ppc64el 28-1ubuntu5 [59.3 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsqlite3-0 ppc64el 3.36.0-2 [744 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main ppc64el tzdata all 2021e-1ubuntu1 [343 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgdbm6 ppc64el 1.22-1 [43.1 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpg ppc64el 2.2.27-2ubuntu1 [661 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpgconf ppc64el 2.2.27-2ubuntu1 [104 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpg-agent ppc64el 2.2.27-2ubuntu1 [247 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgdbm-compat4 ppc64el 1.22-1 [6864 B] Get:93 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el linux-libc-dev ppc64el 5.15.0-12.12 [1258 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main ppc64el lockfile-progs ppc64el 0.1.19 [10.2 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main ppc64el make ppc64el 4.3-4ubuntu2 [211 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main ppc64el pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 72.5 MB in 2s (32.1 MB/s) (Reading database ... 13185 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... 13184 files and directories currently installed.) Preparing to unpack .../libpam0g_1.4.0-10ubuntu1_ppc64el.deb ... Unpacking libpam0g:ppc64el (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam0g:ppc64el (1.4.0-10ubuntu1) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 13184 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.26-1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.26-1) over (1:4.4.18-4ubuntu2) ... Preparing to unpack .../libcrypt1_1%3a4.4.26-1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.26-1) over (1:4.4.18-4ubuntu2) ... Setting up libcrypt1:ppc64el (1:4.4.26-1) ... (Reading database ... 13184 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22312174 ppc64el jammy-proposed -c chroot:build-PACKAGEBUILD-22312174 --arch=ppc64el --dist=jammy-proposed --nolog unifrac_0.10.0-3.dsc Initiating build PACKAGEBUILD-22312174 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:53:41 UTC 2021 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-006.buildd +==============================================================================+ | unifrac 0.10.0-3 (ppc64el) Tue, 30 Nov 2021 12:25:37 +0000 | +==============================================================================+ Package: unifrac Version: 0.10.0-3 Source Version: 0.10.0-3 Distribution: jammy-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22312174/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- unifrac_0.10.0-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/unifrac-ELCt5F/unifrac-0.10.0' with '<>' I: NOTICE: Log filtering will replace 'build/unifrac-ELCt5F' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-X8cbOx/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-X8cbOx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-X8cbOx/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-X8cbOx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-X8cbOx/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-X8cbOx/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (136 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 654 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-X8cbOx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [654 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 654 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio, chrpath Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio, chrpath dpkg-deb: building package 'sbuild-build-depends-unifrac-dummy' in '/<>/resolver-X8cbOx/apt_archive/sbuild-build-depends-unifrac-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-unifrac-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-X8cbOx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-X8cbOx/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-X8cbOx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-X8cbOx/apt_archive ./ Sources [577 B] Get:5 copy:/<>/resolver-X8cbOx/apt_archive ./ Packages [655 B] Fetched 2195 B in 0s (176 kB/s) Reading package lists... Reading package lists... Install unifrac build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath cython3 debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file fonts-dejavu-core fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libimagequant0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libssw0 libsub-override-perl libsz2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 libxslt1.1 m4 mailcap man-db media-types mime-support po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-backcall python3-biom-format python3-brotli python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ipython python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-natsort python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl python3-traitlets python3-tz python3-ufolib2 python3-urllib3 python3-wcwidth python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal unicode-data zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit python3-toml gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libjs-jquery-ui-docs liblcms2-utils libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc python-biom-format-doc python-cycler-doc python-h5py-doc python-ipython-doc python-lockfile-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gfortran python-numpy-doc python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-pytest python3-simplejson python3-psutil python3-bs4 python3-html5lib python3-pil.imagetk python3-tk python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables python3-jinja2 python3-olefile python3-nose The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath cython3 debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file fonts-dejavu-core fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libimagequant0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblzf1 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenjp2-7 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libssw0 libsub-override-perl libsz2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 libxslt1.1 m4 mailcap man-db media-types mime-support po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-backcall python3-biom-format python3-brotli python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ipython python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-natsort python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl python3-traitlets python3-tz python3-ufolib2 python3-urllib3 python3-wcwidth python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal sbuild-build-depends-unifrac-dummy unicode-data zlib1g-dev 0 upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 138 MB of archives. After this operation, 698 MB of additional disk space will be used. 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ppc64el 1.4.18-5ubuntu1 [213 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main ppc64el autoconf all 2.71-2 [338 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main ppc64el autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main ppc64el automake all 1:1.16.5-1.1 [558 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main ppc64el autopoint all 0.21-4ubuntu3 [422 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/universe ppc64el chrpath ppc64el 0.16-2 [13.3 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/universe ppc64el cython3 ppc64el 0.29.24-0ubuntu3 [2549 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtool all 2.4.6-15build1 [164 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:51 http://ftpmaster.internal/ubuntu jammy/main ppc64el libfile-stripnondeterminism-perl all 1.12.1-1 [18.1 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main ppc64el dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:53 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdw1 ppc64el 0.186-1 [290 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main ppc64el debugedit ppc64el 1:5.0-3 [51.7 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main ppc64el dwz ppc64el 0.14-1build1 [125 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main ppc64el gettext ppc64el 0.21-4ubuntu3 [895 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main ppc64el debhelper all 13.5.2ubuntu1 [926 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-lib2to3 all 3.9.9-2 [77.8 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-distutils all 3.9.9-2 [144 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/universe ppc64el dh-python all 5.20211114 [99.8 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main ppc64el fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/universe ppc64el fonts-lyx all 2.3.6-1 [159 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/universe ppc64el hdf5-helpers ppc64el 1.10.7+repack-4ubuntu1 [14.2 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libaec0 ppc64el 1.0.6-1 [27.9 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main ppc64el libblas3 ppc64el 3.9.0-3ubuntu3 [149 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main ppc64el libbrotli1 ppc64el 1.0.9-2build4 [372 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg2-2build1 [23.2 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg2-2build1 [69.5 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main ppc64el libldap-2.5-0 ppc64el 2.5.6+dfsg-1~exp1ubuntu1 [222 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main ppc64el libnghttp2-14 ppc64el 1.43.0-1build1 [89.0 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build3 [65.8 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main ppc64el libssh-4 ppc64el 0.9.6-1 [237 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcurl4 ppc64el 7.74.0-1.3ubuntu2 [353 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcurl4-openssl-dev ppc64el 7.74.0-1.3ubuntu2 [432 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdeflate0 ppc64el 1.8-1ubuntu1 [48.9 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main ppc64el libexpat1-dev ppc64el 2.4.1-3 [155 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main ppc64el libfreetype6 ppc64el 2.11.0+dfsg-1 [523 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgfortran5 ppc64el 11.2.0-12ubuntu1 [507 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgraphite2-3 ppc64el 1.3.14-1build1 [85.5 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main ppc64el libharfbuzz0b ppc64el 2.7.4-1ubuntu2 [448 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libsz2 ppc64el 1.0.6-1 [5804 B] Get:84 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-103-1 ppc64el 1.10.7+repack-4ubuntu1 [1385 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-cpp-103-1 ppc64el 1.10.7+repack-4ubuntu1 [130 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-fortran-102 ppc64el 1.10.7+repack-4ubuntu1 [101 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-hl-100 ppc64el 1.10.7+repack-4ubuntu1 [74.6 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-hl-fortran-100 ppc64el 1.10.7+repack-4ubuntu1 [35.2 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-hl-cpp-100 ppc64el 1.10.7+repack-4ubuntu1 [10.7 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu7 [177 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjpeg-turbo8 ppc64el 2.1.1-0ubuntu1 [219 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.1-0ubuntu1 [342 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:94 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu8 [1606 B] Get:95 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu8 [1602 B] Get:96 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libaec-dev ppc64el 1.0.6-1 [27.2 kB] Get:97 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libssl-dev ppc64el 3.0.0-1ubuntu1 [2620 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhdf5-dev ppc64el 1.10.7+repack-4ubuntu1 [3247 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main ppc64el libimagequant0 ppc64el 2.12.2-1.1build1 [38.2 kB] Get:100 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [321 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libjs-jquery-ui all 1.13.0+dfsg-1 [253 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjs-underscore all 1.9.1~dfsg-4 [103 kB] Get:103 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libjs-sphinxdoc all 4.3.1-1 [139 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main ppc64el liblapack3 ppc64el 3.9.0-3ubuntu3 [2028 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.3-9 [29.3 kB] Get:106 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python-matplotlib-data all 3.5.0-2 [2942 kB] Get:125 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3.10 ppc64el 3.10.0-5build1 [473 kB] Get:126 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-all ppc64el 3.9.7-4 [910 B] Get:127 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3.9-dev ppc64el 3.9.9-1build1 [507 kB] Get:128 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-dev ppc64el 3.9.7-4 [25.9 kB] Get:129 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3.10-dev ppc64el 3.10.0-5build1 [509 kB] Get:130 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-all-dev ppc64el 3.9.7-4 [928 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-appdirs all 1.4.4-1 [11.0 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-attr all 20.3.0-1ubuntu1 [41.0 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-backcall all 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ppc64el 3.1.3+dfsg-1build2 [35.9 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/universe ppc64el unicode-data all 14.0.0-1.1 [8206 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-fonttools ppc64el 4.27.1-1 [828 kB] Get:164 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python3-hdmedians ppc64el 0.14.2-1 [172 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-parso all 0.8.1-1 [64.5 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-jedi all 0.18.0-1 [615 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-traitlets all 5.1.1-1 [81.2 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-matplotlib-inline all 0.1.3-1 [8070 B] Get:169 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-ptyprocess all 0.7.0-2 [14.0 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-pexpect all 4.8.0-2ubuntu1 [46.7 kB] Get:171 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jammy-proposed/main ppc64el python3-packaging all 21.3-1 [30.7 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/main ppc64el libopenjp2-7 ppc64el 2.4.0-3 [215 kB] Get:182 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-pil ppc64el 8.4.0-1 [467 kB] Get:183 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python3-matplotlib ppc64el 3.5.0-2 [6730 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-natsort all 7.1.0-1 [30.9 kB] Get:185 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-setuptools all 59.2.0-1 [339 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-sklearn-lib ppc64el 0.23.2-5ubuntu4 [3072 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-threadpoolctl all 2.1.0-1 [15.1 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-sklearn all 0.23.2-5ubuntu4 [1829 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-skbio ppc64el 0.5.6-5ubuntu1 [679 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/main ppc64el dh-exec ppc64el 0.23.4build1 [26.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 138 MB in 5s (27.5 MB/s) Selecting previously unselected package libpython3.9-minimal:ppc64el. (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.9-1build1_ppc64el.deb ... Unpacking libpython3.9-minimal:ppc64el (3.9.9-1build1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.4.1-3_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.4.1-3) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.9-1build1_ppc64el.deb ... Unpacking python3.9-minimal (3.9.9-1build1) ... Setting up libpython3.9-minimal:ppc64el (3.9.9-1build1) ... Setting up libexpat1:ppc64el (2.4.1-3) ... Setting up python3.9-minimal (3.9.9-1build1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13654 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.7-4_ppc64el.deb ... Unpacking python3-minimal (3.9.7-4) ... Selecting previously unselected package media-types. 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Selecting previously unselected package unicode-data. Preparing to unpack .../149-unicode-data_14.0.0-1.1_all.deb ... Unpacking unicode-data (14.0.0-1.1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../150-python3-fonttools_4.27.1-1_ppc64el.deb ... Unpacking python3-fonttools (4.27.1-1) ... Selecting previously unselected package python3-hdmedians. Preparing to unpack .../151-python3-hdmedians_0.14.2-1_ppc64el.deb ... Unpacking python3-hdmedians (0.14.2-1) ... Selecting previously unselected package python3-parso. Preparing to unpack .../152-python3-parso_0.8.1-1_all.deb ... Unpacking python3-parso (0.8.1-1) ... Selecting previously unselected package python3-jedi. Preparing to unpack .../153-python3-jedi_0.18.0-1_all.deb ... Unpacking python3-jedi (0.18.0-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../154-python3-traitlets_5.1.1-1_all.deb ... Unpacking python3-traitlets (5.1.1-1) ... 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No schema files found: doing nothing. Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.9-2build4) ... Setting up libnghttp2-14:ppc64el (1.43.0-1build1) ... Setting up libmagic1:ppc64el (1:5.41-2) ... Setting up libdeflate0:ppc64el (1.8-1ubuntu1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libqhull-r8.0:ppc64el (2020.2-4) ... Setting up file (1:5.41-2) ... Setting up libjbig0:ppc64el (2.1-3.1build2) ... Setting up libaec0:ppc64el (1.0.6-1) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg2-2build1) ... Setting up unicode-data (14.0.0-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:ppc64el (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libexpat1-dev:ppc64el (2.4.1-3) ... Setting up libfreetype6:ppc64el (2.11.0+dfsg-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build3) ... Setting up liblzf1:ppc64el (3.6-3) ... Setting up libsigsegv2:ppc64el (2.13-1ubuntu2) ... Setting up libfribidi0:ppc64el (1.0.8-2ubuntu2) ... Setting up libimagequant0:ppc64el (2.12.2-1.1build1) ... Setting up libssl-dev:ppc64el (3.0.0-1ubuntu1) ... Setting up libpython3.10-minimal:ppc64el (3.10.0-5build1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:ppc64el (0.6.1-2.1build1) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libjpeg-turbo8:ppc64el (2.1.1-0ubuntu1) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg2-2build1) ... Setting up libssh-4:ppc64el (0.9.6-1) ... Setting up libgfortran5:ppc64el (11.2.0-12ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu7) ... Setting up libmd0:ppc64el (1.0.4-1) ... Setting up libuchardet0:ppc64el (0.0.7-1build1) ... Setting up libmpdec3:ppc64el (2.5.1-2build1) ... Setting up libopenjp2-7:ppc64el (2.4.0-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:ppc64el (2.7.4-1ubuntu2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Setting up python-matplotlib-data (3.5.0-2) ... Setting up libwebpmux3:ppc64el (0.6.1-2.1build1) ... Setting up libbsd0:ppc64el (0.11.3-1ubuntu3) ... Setting up mailcap (3.70ubuntu1) ... Setting up libelf1:ppc64el (0.186-1) ... Setting up libssw0:ppc64el (1.1-13) ... Setting up libxml2:ppc64el (2.9.12+dfsg-5) ... Setting up chrpath (0.16-2) ... Setting up libsz2:ppc64el (1.0.6-1) ... Setting up libpython3.9-stdlib:ppc64el (3.9.9-1build1) ... Setting up libpython3-stdlib:ppc64el (3.9.7-4) ... Setting up libjs-underscore (1.9.1~dfsg-4) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libdw1:ppc64el (0.186-1) ... Setting up libjpeg-turbo8-dev:ppc64el (2.1.1-0ubuntu1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu4) ... Setting up liblapack3:ppc64el (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libxcb1:ppc64el (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15build1) ... Setting up libwebpdemux2:ppc64el (0.6.1-2.1build1) ... Setting up libedit2:ppc64el (3.1-20210910-1) ... Setting up libaec-dev:ppc64el (1.0.6-1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up python3.10-minimal (3.10.0-5build1) ... Setting up libldap-2.5-0:ppc64el (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:ppc64el (3.10.0-5build1) ... Setting up libpython3.9:ppc64el (3.9.9-1build1) ... Setting up libjs-jquery-ui (1.13.0+dfsg-1) ... Setting up libraqm0:ppc64el (0.7.0-4) ... Setting up libjs-sphinxdoc (4.3.1-1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up libxslt1.1:ppc64el (1.1.34-4build1) ... Setting up debugedit (1:5.0-3) ... Setting up libcurl4:ppc64el (7.74.0-1.3ubuntu2) ... Setting up libtiff5:ppc64el (4.3.0-2) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Setting up python3.9 (3.9.9-1build1) ... Setting up liblbfgsb0:ppc64el (3.0+dfsg.3-9) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:ppc64el (3.10.0-5build1) ... Setting up python3.10 (3.10.0-5build1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu8) ... Setting up libpython3.9-dev:ppc64el (3.9.9-1build1) ... Setting up python3 (3.9.7-4) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-tz (2021.3-1) ... Setting up python3-natsort (7.1.0-1) ... Setting up python3-six (1.16.0-2) ... Setting up dh-autoreconf (20) ... Setting up python3-pil:ppc64el (8.4.0-1) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-wcwidth (0.1.9+dfsg1-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up libcurl4-openssl-dev:ppc64el (7.74.0-1.3ubuntu2) ... Setting up python3-brotli (1.0.9-2build4) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.3.2-1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.24-0ubuntu3) ... Setting up libpython3.10-dev:ppc64el (3.10.0-5build1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3.10-dev (3.10.0-5build1) ... Setting up libhdf5-103-1:ppc64el (1.10.7+repack-4ubuntu1) ... Setting up python3.9-dev (3.9.9-1build1) ... Setting up python3-lxml:ppc64el (4.6.4-1) ... Setting up python3-traitlets (5.1.1-1) ... Setting up libhdf5-cpp-103-1:ppc64el (1.10.7+repack-4ubuntu1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-msgpack (1.0.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.9.9-2) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-ptyprocess (0.7.0-2) ... Setting up libhdf5-hl-100:ppc64el (1.10.7+repack-4ubuntu1) ... Setting up python3-pkg-resources (59.2.0-1) ... Setting up python3-prompt-toolkit (3.0.22-1) ... Setting up python3-distutils (3.9.9-2) ... Setting up dh-python (5.20211114) ... Setting up python3-sympy (1.7.1-3) ... Setting up python3-attr (20.3.0-1ubuntu1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up libpython3-dev:ppc64el (3.9.7-4) ... Setting up python3-setuptools (59.2.0-1) ... Setting up python3-backcall (0.2.0-2) ... Setting up python3-joblib (0.17.0-4ubuntu1) ... Setting up python3-parso (0.8.1-1) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-lz4 (3.1.3+dfsg-1build2) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-all (3.9.7-4) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up dh-exec (0.23.4build1) ... Setting up python3-click (8.0.2-1) ... Setting up python3-matplotlib-inline (0.1.3-1) ... Setting up python3-fs (2.4.12-1) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up libhdf5-hl-cpp-100:ppc64el (1.10.7+repack-4ubuntu1) ... Setting up python3-packaging (21.3-1) ... Setting up python3-chardet (4.0.0-1) ... Setting up libpython3-all-dev:ppc64el (3.9.7-4) ... Setting up python3-pexpect (4.8.0-2ubuntu1) ... Setting up python3-dev (3.9.7-4) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up libhdf5-fortran-102:ppc64el (1.10.7+repack-4ubuntu1) ... Setting up python3-numpy (1:1.21.4-2) ... Setting up python3-hdmedians (0.14.2-1) ... Setting up libhdf5-hl-fortran-100:ppc64el (1.10.7+repack-4ubuntu1) ... Setting up python3-cachecontrol (0.12.10-1) ... Setting up python3-all-dev (3.9.7-4) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up python3-jedi (0.18.0-1) ... Setting up python3-pandas-lib:ppc64el (1.1.5+dfsg-2ubuntu1) ... Setting up python3-sklearn-lib:ppc64el (0.23.2-5ubuntu4) ... Setting up python3-h5py-serial (3.3.0-4ubuntu1) ... Setting up python3-pandas (1.1.5+dfsg-2ubuntu1) ... Setting up python3-ipython (7.27.0-1) ... Setting up libhdf5-dev (1.10.7+repack-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/powerpc64le-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-h5py (3.3.0-4ubuntu1) ... Setting up python3-sklearn (0.23.2-5ubuntu4) ... Setting up python3-biom-format (2.1.10-2ubuntu1) ... Setting up python3-fonttools (4.27.1-1) ... Setting up python3-ufolib2 (0.11.1+dfsg1-1) ... Setting up python3-matplotlib (3.5.0-2) ... Setting up python3-skbio (0.5.6-5ubuntu1) ... Setting up sbuild-build-depends-unifrac-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-163-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-12.12 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 binutils-powerpc64le-linux-gnu_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 chrpath_0.16-2 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-12ubuntu1 cython3_0.29.24-0ubuntu3 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2ubuntu1 debianutils_5.5-1 debugedit_1:5.0-3 dh-autoreconf_20 dh-exec_0.23.4build1 dh-python_5.20211114 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.4-1ubuntu1 fakeroot_1.25.3-1.1ubuntu3 file_1:5.41-2 findutils_4.8.0-1ubuntu2 fonts-dejavu-core_2.37-2build1 fonts-lyx_2.3.6-1 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-12ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-12ubuntu1 gcc-11-base_11.2.0-12ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-2ubuntu1 gpg-agent_2.2.27-2ubuntu1 gpgconf_2.2.27-2ubuntu1 gpgv_2.2.27-2ubuntu1 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hdf5-helpers_1.10.7+repack-4ubuntu1 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 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libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.0-12.12 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu10 logsave_1.46.4-1ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 mailcap_3.70ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 media-types_4.0.0 mime-support_3.66 mount_2.37.2-4ubuntu1 ncurses-base_6.3-1 ncurses-bin_6.3-1 openssl_3.0.0-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu10 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 python-matplotlib-data_3.5.0-2 python3_3.9.7-4 python3-all_3.9.7-4 python3-all-dev_3.9.7-4 python3-appdirs_1.4.4-1 python3-attr_20.3.0-1ubuntu1 python3-backcall_0.2.0-2 python3-biom-format_2.1.10-2ubuntu1 python3-brotli_1.0.9-2build4 python3-cachecontrol_0.12.10-1 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-click_8.0.2-1 python3-colorama_0.4.4-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-0ubuntu1 python3-dev_3.9.7-4 python3-distutils_3.9.9-2 python3-fonttools_4.27.1-1 python3-fs_2.4.12-1 python3-h5py_3.3.0-4ubuntu1 python3-h5py-serial_3.3.0-4ubuntu1 python3-hdmedians_0.14.2-1 python3-idna_2.10-1 python3-ipython_7.27.0-1 python3-jedi_0.18.0-1 python3-joblib_0.17.0-4ubuntu1 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.9-2 python3-lockfile_1:0.12.2-2.2 python3-lxml_4.6.4-1 python3-lz4_3.1.3+dfsg-1build2 python3-matplotlib_3.5.0-2 python3-matplotlib-inline_0.1.3-1 python3-minimal_3.9.7-4 python3-mpmath_1.2.1-2 python3-msgpack_1.0.2-2 python3-natsort_7.1.0-1 python3-numpy_1:1.21.4-2 python3-packaging_21.3-1 python3-pandas_1.1.5+dfsg-2ubuntu1 python3-pandas-lib_1.1.5+dfsg-2ubuntu1 python3-parso_0.8.1-1 python3-pexpect_4.8.0-2ubuntu1 python3-pickleshare_0.7.5-5 python3-pil_8.4.0-1 python3-pkg-resources_59.2.0-1 python3-prompt-toolkit_3.0.22-1 python3-ptyprocess_0.7.0-2 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-requests_2.25.1+dfsg-2 python3-scipy_1.7.1-1ubuntu1 python3-setuptools_59.2.0-1 python3-six_1.16.0-2 python3-skbio_0.5.6-5ubuntu1 python3-sklearn_0.23.2-5ubuntu4 python3-sklearn-lib_0.23.2-5ubuntu4 python3-sympy_1.7.1-3 python3-threadpoolctl_2.1.0-1 python3-traitlets_5.1.1-1 python3-tz_2021.3-1 python3-ufolib2_0.11.1+dfsg1-1 python3-urllib3_1.26.5-1~exp1 python3-wcwidth_0.1.9+dfsg1-2 python3.10_3.10.0-5build1 python3.10-dev_3.10.0-5build1 python3.10-minimal_3.10.0-5build1 python3.9_3.9.9-1build1 python3.9-dev_3.9.9-1build1 python3.9-minimal_3.9.9-1build1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-unifrac-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 unicode-data_14.0.0-1.1 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Sep 14 12:17:52 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./unifrac_0.10.0-3.dsc dpkg-source: info: extracting unifrac in /<> dpkg-source: info: unpacking unifrac_0.10.0.orig.tar.gz dpkg-source: info: unpacking unifrac_0.10.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-cython-post-clean.patch dpkg-source: info: applying Fix-Makefile.patch dpkg-source: info: applying remove-check-for-pkg-version.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22312174 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22312174 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22312174 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package unifrac dpkg-buildpackage: info: source version 0.10.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:237: python3.10 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.10_unifrac/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.9_unifrac/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it find . -name "*.o" -delete rm -rf .pybuild/ build/ sucpp/ssu unifrac/_api.cpp sucpp/test_su sucpp/test_api sucpp/libssu.so.0 sucpp/faithpd sucpp/libssu.so rm -rf unifrac.egg-info make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/unifrac/_api.pxd tree = Parsing.p_module(s, pxd, full_module_name) Compiling unifrac/_api.pyx because it changed. [1/1] Cythonizing unifrac/_api.pyx running config I: pybuild base:237: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac copying unifrac/_meta.py -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac copying unifrac/_methods.py -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac copying unifrac/__init__.py -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac creating /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests creating /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data running build_ext Compiling SSU make[1]: Entering directory '/<>/sucpp' rm -f *.o ssu make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c tree.cpp -o tree.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c biom.cpp -o biom.o biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 101 | H5File(const H5File& original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 57 | Group(const Group& original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp:24:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 24 | obs_indices = file.openDataSet(OBS_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:25:49: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 25 | obs_data = file.openDataSet(OBS_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:26:61: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 26 | sample_indices = file.openDataSet(SAMPLE_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:27:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 27 | sample_data = file.openDataSet(SAMPLE_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:115:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 115 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 116 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:141:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 141 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 142 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:184:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 184 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 185 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:190:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 190 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 191 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:238:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 238 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 239 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:244:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 244 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 245 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:4: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition In file included from unifrac.cpp:4: affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ unifrac.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac.cpp:42:1: warning: no return statement in function returning non-void [-Wreturn-type] 42 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac_task.cpp -o unifrac_task.o unifrac_task.cpp: In function ‘void su::_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double, const su::task_parameters*)’: unifrac_task.cpp:6:81: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 6 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ unifrac_task.cpp: In function ‘void su::_vaw_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double*, double*, double, const su::task_parameters*)’: unifrac_task.cpp:56:85: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 56 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c api.cpp -o api.o api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_su.cpp -o test_su tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_su.cpp: In function ‘void test_bptree_postorder()’: test_su.cpp:387:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 387 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:389:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 389 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_preorder()’: test_su.cpp:405:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 405 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:407:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 407 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_parent()’: test_su.cpp:425:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 425 | uint32_t obs[tree.nparens - 2]; | ^~~ test_su.cpp:427:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 427 | for(int i = 0; i < (tree.nparens) - 2; i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_leftchild()’: test_su.cpp:519:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 519 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightchild()’: test_su.cpp:534:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 534 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightsibling()’: test_su.cpp:549:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 549 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unifrac_set_proportions()’: test_su.cpp:614:12: warning: unused variable ‘sample_counts’ [-Wunused-variable] 614 | double sample_counts[] = {7, 3, 4, 6, 3, 4}; | ^~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unweighted_unifrac()’: test_su.cpp:981:14: warning: unused variable ‘obs’ [-Wunused-variable] 981 | double **obs; | ^~~ test_su.cpp: In function ‘void test_unweighted_unifrac_fast()’: test_su.cpp:1021:14: warning: unused variable ‘obs’ [-Wunused-variable] 1021 | double **obs; | ^~~ test_su.cpp: In function ‘void test_normalized_weighted_unifrac()’: test_su.cpp:1061:14: warning: unused variable ‘obs’ [-Wunused-variable] 1061 | double **obs; | ^~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_api.cpp -o test_api tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_api.cpp: In function ‘void test_merge_partial_mat()’: test_api.cpp:207:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:210:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 210 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ test_api.cpp:224:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 224 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:227:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 227 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC su.cpp -o ssu tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:115:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 115 | for(unsigned int p = 0; p < npartials; p++) { | ~~^~~~~~~~~~~ su.cpp: In function ‘int main(int, char**)’: su.cpp:304:24: warning: unused variable ‘report_bare’ [-Wunused-variable] 304 | const std::string &report_bare = input.getCmdOption("--report-bare"); | ^~~~~~~~~~~ su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:132:1: warning: control reaches end of non-void function [-Wreturn-type] 132 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC faithpd.cpp -o faithpd tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC api.cpp -c -o api.o -fPIC api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -shared -o libssu.so.0 tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp -shlib -Wl,-soname,libssu.so.0 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -o libssu.a tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp make[1]: Leaving directory '/<>/sucpp' building 'unifrac._api' extension creating build creating build/temp.linux-ppc64el-3.10 creating build/temp.linux-ppc64el-3.10/sucpp creating build/temp.linux-ppc64el-3.10/unifrac powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -Isucpp/ -I/usr/include/python3.10 -c sucpp/api.cpp -o build/temp.linux-ppc64el-3.10/sucpp/api.o -std=c++11 -I/usr/include/hdf5/serial sucpp/api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: sucpp/api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ sucpp/api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int sucpp/api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: sucpp/api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ sucpp/api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: sucpp/api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ sucpp/api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int sucpp/api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: sucpp/api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ sucpp/api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ sucpp/api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ sucpp/api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ sucpp/api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: sucpp/api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ sucpp/api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -Isucpp/ -I/usr/include/python3.10 -c unifrac/_api.cpp -o build/temp.linux-ppc64el-3.10/unifrac/_api.o -std=c++11 -I/usr/include/hdf5/serial In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from unifrac/_api.cpp:675: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.cpp: In function ‘PyObject* __pyx_pf_7unifrac_4_api_ssu(PyObject*, PyObject*, PyObject*, PyObject*, bool, double, bool, unsigned int)’: unifrac/_api.cpp:3236:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 3236 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_16; __pyx_t_9+=1) { | ~~~~~~~~~~^~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/sucpp/api.o build/temp.linux-ppc64el-3.10/unifrac/_api.o -Lsucpp/ -lssu -o /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/_api.cpython-310-powerpc64le-linux-gnu.so -std=c++11 I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac copying unifrac/_meta.py -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac copying unifrac/_methods.py -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac copying unifrac/__init__.py -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac creating /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests copying unifrac/tests/test_api.py -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests copying unifrac/tests/__init__.py -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests copying unifrac/tests/test_methods.py -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests creating /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e1.biom -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/e2.biom -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.biom -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/test.faith.exp -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/crawford.tre -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t2.newick -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data copying unifrac/tests/data/t1.newick -> /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data running build_ext Compiling SSU make[1]: Entering directory '/<>/sucpp' rm -f *.o ssu make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c tree.cpp -o tree.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c biom.cpp -o biom.o biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 101 | H5File(const H5File& original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 57 | Group(const Group& original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp:24:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 24 | obs_indices = file.openDataSet(OBS_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:25:49: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 25 | obs_data = file.openDataSet(OBS_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:26:61: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 26 | sample_indices = file.openDataSet(SAMPLE_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:27:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 27 | sample_data = file.openDataSet(SAMPLE_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:115:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 115 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 116 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:141:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 141 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 142 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:184:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 184 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 185 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:190:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 190 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 191 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:238:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 238 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 239 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:244:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 244 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 245 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:4: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition In file included from unifrac.cpp:4: affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ unifrac.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac.cpp:42:1: warning: no return statement in function returning non-void [-Wreturn-type] 42 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac_task.cpp -o unifrac_task.o unifrac_task.cpp: In function ‘void su::_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double, const su::task_parameters*)’: unifrac_task.cpp:6:81: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 6 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ unifrac_task.cpp: In function ‘void su::_vaw_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double*, double*, double, const su::task_parameters*)’: unifrac_task.cpp:56:85: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 56 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c api.cpp -o api.o api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_su.cpp -o test_su tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_su.cpp: In function ‘void test_bptree_postorder()’: test_su.cpp:387:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 387 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:389:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 389 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_preorder()’: test_su.cpp:405:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 405 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:407:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 407 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_parent()’: test_su.cpp:425:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 425 | uint32_t obs[tree.nparens - 2]; | ^~~ test_su.cpp:427:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 427 | for(int i = 0; i < (tree.nparens) - 2; i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_leftchild()’: test_su.cpp:519:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 519 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightchild()’: test_su.cpp:534:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 534 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightsibling()’: test_su.cpp:549:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 549 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unifrac_set_proportions()’: test_su.cpp:614:12: warning: unused variable ‘sample_counts’ [-Wunused-variable] 614 | double sample_counts[] = {7, 3, 4, 6, 3, 4}; | ^~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unweighted_unifrac()’: test_su.cpp:981:14: warning: unused variable ‘obs’ [-Wunused-variable] 981 | double **obs; | ^~~ test_su.cpp: In function ‘void test_unweighted_unifrac_fast()’: test_su.cpp:1021:14: warning: unused variable ‘obs’ [-Wunused-variable] 1021 | double **obs; | ^~~ test_su.cpp: In function ‘void test_normalized_weighted_unifrac()’: test_su.cpp:1061:14: warning: unused variable ‘obs’ [-Wunused-variable] 1061 | double **obs; | ^~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_api.cpp -o test_api tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_api.cpp: In function ‘void test_merge_partial_mat()’: test_api.cpp:207:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:210:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 210 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ test_api.cpp:224:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 224 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:227:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 227 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC su.cpp -o ssu tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:115:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 115 | for(unsigned int p = 0; p < npartials; p++) { | ~~^~~~~~~~~~~ su.cpp: In function ‘int main(int, char**)’: su.cpp:304:24: warning: unused variable ‘report_bare’ [-Wunused-variable] 304 | const std::string &report_bare = input.getCmdOption("--report-bare"); | ^~~~~~~~~~~ su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:132:1: warning: control reaches end of non-void function [-Wreturn-type] 132 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC faithpd.cpp -o faithpd tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC api.cpp -c -o api.o -fPIC api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -shared -o libssu.so.0 tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp -shlib -Wl,-soname,libssu.so.0 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -o libssu.a tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp make[1]: Leaving directory '/<>/sucpp' building 'unifrac._api' extension creating build/temp.linux-ppc64el-3.9 creating build/temp.linux-ppc64el-3.9/sucpp creating build/temp.linux-ppc64el-3.9/unifrac powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -Isucpp/ -I/usr/include/python3.9 -c sucpp/api.cpp -o build/temp.linux-ppc64el-3.9/sucpp/api.o -std=c++11 -I/usr/include/hdf5/serial sucpp/api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: sucpp/api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ sucpp/api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int sucpp/api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: sucpp/api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ sucpp/api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: sucpp/api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ sucpp/api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int sucpp/api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: sucpp/api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ sucpp/api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ sucpp/api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ sucpp/api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ sucpp/api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: sucpp/api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ sucpp/api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sucpp/api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iunifrac -I/usr/lib/python3/dist-packages/numpy/core/include -Isucpp/ -I/usr/include/python3.9 -c unifrac/_api.cpp -o build/temp.linux-ppc64el-3.9/unifrac/_api.o -std=c++11 -I/usr/include/hdf5/serial In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from unifrac/_api.cpp:675: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ unifrac/_api.cpp: In function ‘PyObject* __pyx_pf_7unifrac_4_api_ssu(PyObject*, PyObject*, PyObject*, PyObject*, bool, double, bool, unsigned int)’: unifrac/_api.cpp:3236:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 3236 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_16; __pyx_t_9+=1) { | ~~~~~~~~~~^~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.9/sucpp/api.o build/temp.linux-ppc64el-3.9/unifrac/_api.o -Lsucpp/ -lssu -o /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/_api.cpython-39-powerpc64le-linux-gnu.so -std=c++11 debian/rules override_dh_auto_test make[1]: Entering directory '/<>' LD_LIBRARY_PATH=:`pwd`/sucpp dh_auto_test -O --buildsystem=pybuild I: pybuild base:237: cd /<>/.pybuild/cpython3_3.10_unifrac/build; python3.10 -m unittest discover -v test_ssu_table_not_subset_tree (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_minimal_trees (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_normalized_root_not_observed (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_identity_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_non_overlapping_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_symmetry_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_faith_pd (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_all_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_biom_table_empty (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_extra_tips (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_invalid_input (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_minimal (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_none_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_root_not_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_series_name (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_table_not_subset_tree (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_zero_branches_omitted (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_meta_unifrac (unifrac.tests.test_api.UnifracAPITests) ... ok test_ssu_bad_method (unifrac.tests.test_api.UnifracAPITests) ... ok test_ssu_bad_table (unifrac.tests.test_api.UnifracAPITests) ... ok test_ssu_bad_tree (unifrac.tests.test_api.UnifracAPITests) ... ok test_unweighted_root_eval_issue_46 (unifrac.tests.test_api.UnifracAPITests) ... ok test_meta_unifrac (unifrac.tests.test_methods.StateUnifracTests) meta_unifrac should give correct result on sample trees ... ok test_meta_unifrac_alpha_not_generalized (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_bad_consolidation (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_bad_method (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_missing (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_no_method (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_unbalanced (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_unbalanced_weights (unifrac.tests.test_methods.StateUnifracTests) ... ok ---------------------------------------------------------------------- Ran 45 tests in 4.362s OK I: pybuild base:237: cd /<>/.pybuild/cpython3_3.9_unifrac/build; python3.9 -m unittest discover -v test_ssu_table_not_subset_tree (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_minimal_trees (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests) ... ok test_unweighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_extra_tips (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_normalized_root_not_observed (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_otus_out_of_order (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_root_not_observed (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_identity (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_identity_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_non_overlapping (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_non_overlapping_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_symmetry (unifrac.tests.test_api.EdgeCasesTests) ... ok test_weighted_unifrac_symmetry_normalized (unifrac.tests.test_api.EdgeCasesTests) ... ok test_faith_pd (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_all_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_biom_table_empty (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_extra_tips (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_invalid_input (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_minimal (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_none_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_root_not_observed (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_series_name (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_table_not_subset_tree (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_faith_pd_zero_branches_omitted (unifrac.tests.test_api.FaithPDEdgeCasesTests) ... ok test_meta_unifrac (unifrac.tests.test_api.UnifracAPITests) ... ok test_ssu_bad_method (unifrac.tests.test_api.UnifracAPITests) ... ok test_ssu_bad_table (unifrac.tests.test_api.UnifracAPITests) ... ok test_ssu_bad_tree (unifrac.tests.test_api.UnifracAPITests) ... ok test_unweighted_root_eval_issue_46 (unifrac.tests.test_api.UnifracAPITests) ... ok test_meta_unifrac (unifrac.tests.test_methods.StateUnifracTests) meta_unifrac should give correct result on sample trees ... ok test_meta_unifrac_alpha_not_generalized (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_bad_consolidation (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_bad_method (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_missing (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_no_method (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_unbalanced (unifrac.tests.test_methods.StateUnifracTests) ... ok test_meta_unifrac_unbalanced_weights (unifrac.tests.test_methods.StateUnifracTests) ... ok ---------------------------------------------------------------------- Ran 45 tests in 4.765s OK make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /<>/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext Compiling SSU make[1]: Entering directory '/<>/sucpp' rm -f *.o ssu make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c tree.cpp -o tree.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c biom.cpp -o biom.o biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 101 | H5File(const H5File& original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 57 | Group(const Group& original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp:24:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 24 | obs_indices = file.openDataSet(OBS_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:25:49: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 25 | obs_data = file.openDataSet(OBS_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:26:61: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 26 | sample_indices = file.openDataSet(SAMPLE_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:27:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 27 | sample_data = file.openDataSet(SAMPLE_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:115:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 115 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 116 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:141:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 141 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 142 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:184:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 184 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 185 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:190:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 190 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 191 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:238:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 238 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 239 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:244:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 244 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 245 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:4: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition In file included from unifrac.cpp:4: affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ unifrac.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac.cpp:42:1: warning: no return statement in function returning non-void [-Wreturn-type] 42 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac_task.cpp -o unifrac_task.o unifrac_task.cpp: In function ‘void su::_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double, const su::task_parameters*)’: unifrac_task.cpp:6:81: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 6 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ unifrac_task.cpp: In function ‘void su::_vaw_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double*, double*, double, const su::task_parameters*)’: unifrac_task.cpp:56:85: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 56 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c api.cpp -o api.o api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_su.cpp -o test_su tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_su.cpp: In function ‘void test_bptree_postorder()’: test_su.cpp:387:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 387 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:389:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 389 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_preorder()’: test_su.cpp:405:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 405 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:407:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 407 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_parent()’: test_su.cpp:425:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 425 | uint32_t obs[tree.nparens - 2]; | ^~~ test_su.cpp:427:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 427 | for(int i = 0; i < (tree.nparens) - 2; i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_leftchild()’: test_su.cpp:519:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 519 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightchild()’: test_su.cpp:534:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 534 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightsibling()’: test_su.cpp:549:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 549 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unifrac_set_proportions()’: test_su.cpp:614:12: warning: unused variable ‘sample_counts’ [-Wunused-variable] 614 | double sample_counts[] = {7, 3, 4, 6, 3, 4}; | ^~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unweighted_unifrac()’: test_su.cpp:981:14: warning: unused variable ‘obs’ [-Wunused-variable] 981 | double **obs; | ^~~ test_su.cpp: In function ‘void test_unweighted_unifrac_fast()’: test_su.cpp:1021:14: warning: unused variable ‘obs’ [-Wunused-variable] 1021 | double **obs; | ^~~ test_su.cpp: In function ‘void test_normalized_weighted_unifrac()’: test_su.cpp:1061:14: warning: unused variable ‘obs’ [-Wunused-variable] 1061 | double **obs; | ^~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_api.cpp -o test_api tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_api.cpp: In function ‘void test_merge_partial_mat()’: test_api.cpp:207:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:210:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 210 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ test_api.cpp:224:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 224 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:227:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 227 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC su.cpp -o ssu tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:115:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 115 | for(unsigned int p = 0; p < npartials; p++) { | ~~^~~~~~~~~~~ su.cpp: In function ‘int main(int, char**)’: su.cpp:304:24: warning: unused variable ‘report_bare’ [-Wunused-variable] 304 | const std::string &report_bare = input.getCmdOption("--report-bare"); | ^~~~~~~~~~~ su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:132:1: warning: control reaches end of non-void function [-Wreturn-type] 132 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC faithpd.cpp -o faithpd tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC api.cpp -c -o api.o -fPIC api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -shared -o libssu.so.0 tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp -shlib -Wl,-soname,libssu.so.0 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -o libssu.a tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp make[1]: Leaving directory '/<>/sucpp' running install_lib creating /<>/debian/python3-unifrac creating /<>/debian/python3-unifrac/usr creating /<>/debian/python3-unifrac/usr/lib creating /<>/debian/python3-unifrac/usr/lib/python3.10 creating /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages creating /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/_meta.py -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/_methods.py -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/__init__.py -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac creating /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/__pycache__/_methods.cpython-310.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/__pycache__/_meta.cpython-310.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/__pycache__ creating /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/test_api.py -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/__init__.py -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests creating /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-310.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-310.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/test_methods.py -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests creating /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/e1.biom -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/e2.biom -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/crawford.biom -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/test.faith.exp -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/crawford.tre -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/t2.newick -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/tests/data/t1.newick -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.10_unifrac/build/unifrac/_api.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/_meta.py to _meta.cpython-310.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/_methods.py to _methods.cpython-310.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/test_api.py to test_api.cpython-310.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-310.pyc running install_egg_info running egg_info creating unifrac.egg-info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt writing manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /<>/debian/python3-unifrac/usr/lib/python3.10/dist-packages/unifrac-0.10.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:237: /usr/bin/python3 setup.py install --root /<>/debian/python3-unifrac running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext Compiling SSU make[1]: Entering directory '/<>/sucpp' rm -f *.o ssu make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c tree.cpp -o tree.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c biom.cpp -o biom.o biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:48, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5File.h:101:9: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 101 | H5File(const H5File& original); | ^~~~~~ /usr/include/hdf5/serial/H5File.h: In member function ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’: /usr/include/hdf5/serial/H5File.h:25:17: warning: implicitly-declared ‘H5::Group& H5::Group::operator=(const H5::Group&)’ is deprecated [-Wdeprecated-copy] 25 | class H5_DLLCPP H5File : public Group { | ^~~~~~ In file included from /usr/include/hdf5/serial/H5Cpp.h:47, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5Group.h:57:9: note: because ‘H5::Group’ has user-provided ‘H5::Group::Group(const H5::Group&)’ 57 | Group(const Group& original); | ^~~~~ biom.cpp: In constructor ‘su::biom::biom(std::string)’: biom.cpp:21:51: note: synthesized method ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ first required here 21 | file = H5File(filename.c_str(), H5F_ACC_RDONLY); | ^ biom.cpp:24:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 24 | obs_indices = file.openDataSet(OBS_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:25:49: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 25 | obs_data = file.openDataSet(OBS_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:26:61: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 26 | sample_indices = file.openDataSet(SAMPLE_INDICES.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp:27:55: warning: implicitly-declared ‘H5::DataSet& H5::DataSet::operator=(const H5::DataSet&)’ is deprecated [-Wdeprecated-copy] 27 | sample_data = file.openDataSet(SAMPLE_DATA.c_str()); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:45, from biom.hpp:1, from biom.cpp:4: /usr/include/hdf5/serial/H5DataSet.h:100:9: note: because ‘H5::DataSet’ has user-provided ‘H5::DataSet::DataSet(const H5::DataSet&)’ 100 | DataSet(const DataSet& original); | ^~~~~~~ biom.cpp: In member function ‘void su::biom::load_ids(const char*, std::vector >&)’: biom.cpp:115:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 115 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 116 | sizeof(char*) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘void su::biom::load_indptr(const char*, std::vector&)’: biom.cpp:141:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 141 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 142 | sizeof(uint32_t) * dims[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_obs_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:184:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 184 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 185 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:190:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 190 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 191 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp: In member function ‘unsigned int su::biom::get_sample_data_direct(std::string, uint32_t*&, double*&)’: biom.cpp:238:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 238 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 239 | sizeof(uint32_t) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int biom.cpp:244:47: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long long unsigned int’ [-Wformat=] 244 | fprintf(stderr, "Failed to allocate %zd bytes; [%s]:%d\n", | ~~^ | | | long int | %lld 245 | sizeof(double) * count[0], __FILE__, __LINE__); | ~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long long unsigned int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac.cpp -o unifrac.o In file included from unifrac.cpp:4: affinity.hpp:1: warning: "_GNU_SOURCE" redefined 1 | #define _GNU_SOURCE | : note: this is the location of the previous definition In file included from unifrac.cpp:4: affinity.hpp: In function ‘int bind_to_core(int)’: affinity.hpp:118:62: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘pthread_t’ {aka ‘long unsigned int’} [-Wformat=] 118 | fprintf(stderr, "Unable to bind this thread to core %d. Are sufficient processors available?", thread); | ~^ ~~~~~~ | | | | int pthread_t {aka long unsigned int} | %ld affinity.hpp:99:12: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 99 | int j, ret; | ^~~ unifrac.cpp: In function ‘int sync_printf(const char*, ...)’: unifrac.cpp:42:1: warning: no return statement in function returning non-void [-Wreturn-type] 42 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c unifrac_task.cpp -o unifrac_task.o unifrac_task.cpp: In function ‘void su::_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double, const su::task_parameters*)’: unifrac_task.cpp:6:81: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 6 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ unifrac_task.cpp: In function ‘void su::_vaw_unnormalized_weighted_unifrac_task(std::vector&, std::vector&, double*, double*, double*, double, const su::task_parameters*)’: unifrac_task.cpp:56:85: warning: unused parameter ‘dm_stripes_total’ [-Wunused-parameter] 56 | std::vector &__restrict__ dm_stripes_total, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c api.cpp -o api.o api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_su.cpp -o test_su tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_su.cpp: In function ‘void test_bptree_postorder()’: test_su.cpp:387:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 387 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:389:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 389 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_preorder()’: test_su.cpp:405:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 405 | uint32_t obs[tree.nparens / 2]; | ^~~ test_su.cpp:407:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 407 | for(int i = 0; i < (tree.nparens / 2); i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_parent()’: test_su.cpp:425:14: warning: ISO C++ forbids variable length array ‘obs’ [-Wvla] 425 | uint32_t obs[tree.nparens - 2]; | ^~~ test_su.cpp:427:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 427 | for(int i = 0; i < (tree.nparens) - 2; i++) | ~~^~~~~~~~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_leftchild()’: test_su.cpp:519:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 519 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightchild()’: test_su.cpp:534:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 534 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_bptree_rightsibling()’: test_su.cpp:549:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 549 | for(int i = 0; i < tree.nparens; i++) { | ~~^~~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unifrac_set_proportions()’: test_su.cpp:614:12: warning: unused variable ‘sample_counts’ [-Wunused-variable] 614 | double sample_counts[] = {7, 3, 4, 6, 3, 4}; | ^~~~~~~~~~~~~ test_su.cpp: In function ‘void test_unweighted_unifrac()’: test_su.cpp:981:14: warning: unused variable ‘obs’ [-Wunused-variable] 981 | double **obs; | ^~~ test_su.cpp: In function ‘void test_unweighted_unifrac_fast()’: test_su.cpp:1021:14: warning: unused variable ‘obs’ [-Wunused-variable] 1021 | double **obs; | ^~~ test_su.cpp: In function ‘void test_normalized_weighted_unifrac()’: test_su.cpp:1061:14: warning: unused variable ‘obs’ [-Wunused-variable] 1061 | double **obs; | ^~~ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -Wno-unused-parameter test_api.cpp -o test_api tree.o biom.o unifrac.o unifrac_task.o api.o -pthread test_api.cpp: In function ‘void test_merge_partial_mat()’: test_api.cpp:207:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:210:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 210 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ test_api.cpp:224:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 224 | for(int i = 0; i < obs->cf_size; i++) { | ~~^~~~~~~~~~~~~~ test_api.cpp:227:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 227 | for(int i = 0; i < obs->n_samples; i++) | ~~^~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC -c cmd.cpp -o cmd.o h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC su.cpp -o ssu tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:115:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 115 | for(unsigned int p = 0; p < npartials; p++) { | ~~^~~~~~~~~~~ su.cpp: In function ‘int main(int, char**)’: su.cpp:304:24: warning: unused variable ‘report_bare’ [-Wunused-variable] 304 | const std::string &report_bare = input.getCmdOption("--report-bare"); | ^~~~~~~~~~~ su.cpp: In function ‘int mode_partial_report(std::string, int, bool)’: su.cpp:132:1: warning: control reaches end of non-void function [-Wreturn-type] 132 | } | ^ h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC faithpd.cpp -o faithpd tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lhdf5_cpp -pthread make[1]: Leaving directory '/<>/sucpp' make[1]: Entering directory '/<>/sucpp' h5c++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -Wextra -std=c++11 -pedantic -I. -O4 -fPIC api.cpp -c -o api.o -fPIC api.cpp: In function ‘compute_status partial(const char*, const char*, const char*, bool, double, bool, unsigned int, unsigned int, unsigned int, partial_mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:238:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 238 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:248:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 248 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘compute_status faith_pd_one_off(const char*, const char*, r_vec**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:273:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 273 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp: In function ‘compute_status one_off(const char*, const char*, const char*, bool, double, bool, unsigned int, mat_t**)’: api.cpp:32:81: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses] 32 | if(table.n_samples <= 0 | table.n_obs <= 0) { \ | ~~~~~~~~~~~~~~~~^~~~ api.cpp:290:5: note: in expansion of macro ‘PARSE_SYNC_TREE_TABLE’ 290 | PARSE_SYNC_TREE_TABLE(tree_filename, table_filename) | ^~~~~~~~~~~~~~~~~~~~~ api.cpp:300:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 300 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int api.cpp: In function ‘IOStatus read_partial(const char*, partial_mat_t**)’: api.cpp:476:57: warning: comparison of unsigned expression in ‘< 0’ is always false [-Wtype-limits] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~^~~ api.cpp:476:103: warning: comparison of constant ‘0’ with boolean expression is always false [-Wbool-compare] 476 | if(n_samples <= 0 || n_stripes <= 0 || stripe_start < 0 || stripe_total <= 0 || is_upper_triangle < 0) | ~~~~~~~~~~~~~~~~~~^~~ api.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i = 0; i < n_samples; i++) { | ~~^~~~~~~~~~~ api.cpp:503:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 503 | for(int i = 0; i < n_stripes; i++) { | ~~^~~~~~~~~~~ api.cpp:501:9: warning: unused variable ‘current_to_load’ [-Wunused-variable] 501 | int current_to_load; | ^~~~~~~~~~~~~~~ api.cpp: In function ‘MergeStatus merge_partial(partial_mat_t**, int, unsigned int, mat_t**)’: api.cpp:538:39: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 538 | if(partial_mats[i]->n_samples != n_samples) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ api.cpp:557:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 557 | for(int j = partial_mats[i]->stripe_start; j < partial_mats[i]->stripe_stop; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:568:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 568 | if(stripe_count != partial_mats[0]->stripe_total) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api.cpp:583:75: warning: format ‘%d’ expects a matching ‘int’ argument [-Wformat=] 583 | fprintf(stderr, "More threads were requested than stripes. Using %d threads.\n"); | ~^ | | | int h5c++ -shared -o libssu.so.0 tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp -shlib -Wl,-soname,libssu.so.0 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now ln -sf libssu.so.0 libssu.so # FIXME: Should build static lib as well # h5c++ -shared -o libssu.a tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp make[1]: Leaving directory '/<>/sucpp' running install_lib creating /<>/debian/python3-unifrac/usr/lib/python3.9 creating /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages creating /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/_meta.py -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/_methods.py -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/_api.cpython-39-powerpc64le-linux-gnu.so -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/__init__.py -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac creating /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/__pycache__/__init__.cpython-39.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/__pycache__/_meta.cpython-39.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/__pycache__/_methods.cpython-39.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/__pycache__ creating /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/test_api.py -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/__init__.py -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests creating /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/__pycache__/__init__.cpython-39.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/__pycache__/test_api.cpython-39.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/__pycache__/test_methods.cpython-39.pyc -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/__pycache__ copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/test_methods.py -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests creating /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/e1.biom -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/e2.biom -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/crawford.biom -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/test.faith.exp -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/crawford.tre -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/t2.newick -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data copying /<>/.pybuild/cpython3_3.9_unifrac/build/unifrac/tests/data/t1.newick -> /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/data byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/_meta.py to _meta.cpython-39.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/_methods.py to _methods.cpython-39.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/test_api.py to test_api.cpython-39.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac/tests/test_methods.py to test_methods.cpython-39.pyc running install_egg_info running egg_info writing unifrac.egg-info/PKG-INFO writing dependency_links to unifrac.egg-info/dependency_links.txt writing requirements to unifrac.egg-info/requires.txt writing top-level names to unifrac.egg-info/top_level.txt reading manifest file 'unifrac.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'unifrac.egg-info/SOURCES.txt' Copying unifrac.egg-info to /<>/debian/python3-unifrac/usr/lib/python3.9/dist-packages/unifrac-0.10.0.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/<>' chrpath -d debian/libssu-tools/usr/bin/ssu chrpath -d debian/libssu-tools/usr/bin/faithpd chrpath -d debian/libssu0/usr/lib/powerpc64le-linux-gnu/libssu.so.0 make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-unifrac/usr/lib/python3/dist-packages/unifrac/_api.cpython-39-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 e5d1b1eca20e6757e6103f2661a270855238ae4b debugedit: debian/libssu-tools/usr/bin/ssu: Unknown DWARF DW_FORM_0x1f21 00fae730e17855708a9a554b20eb4948e988bab1 d38c645620e57c6235c45dd4801c752ba0f2724e debugedit: debian/python3-unifrac/usr/lib/python3/dist-packages/unifrac/_api.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 30c1d019ce922f2d5120422c2bb52bcf91796971 debugedit: debian/libssu-tools/usr/bin/faithpd: Unknown DWARF DW_FORM_0x1f20 207a7c49cc24f5c7a0135102002a650b63eda55d dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libssu-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-unifrac: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-unifrac: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-unifrac: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-unifrac: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libssu0 (in debian/libssu0); do_strip: , oemstrip: pkgstriptranslations: processing libssu-dev (in debian/libssu-dev); do_strip: , oemstrip: pkgstriptranslations: processing python3-unifrac (in debian/python3-unifrac); do_strip: , oemstrip: pkgstriptranslations: processing libssu-tools-dbgsym (in debian/.debhelper/libssu-tools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libssu0/DEBIAN/control, package libssu0, directory debian/libssu0 INFO: pkgstripfiles: waiting for lock (libssu0) ... pkgstripfiles: processing control file: debian/python3-unifrac/DEBIAN/control, package python3-unifrac, directory debian/python3-unifrac pkgstripfiles: processing control file: debian/libssu-dev/DEBIAN/control, package libssu-dev, directory debian/libssu-dev INFO: pkgstripfiles: waiting for lock (libssu-dev) ... Searching for duplicated docs in dependency libssu0... symlinking changelog.Debian.gz in python3-unifrac to file in libssu0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-unifrac ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-unifrac' in '../python3-unifrac_0.10.0-3_ppc64el.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-unifrac-dbgsym (in debian/.debhelper/python3-unifrac/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-unifrac/dbgsym-root/DEBIAN/control, package python3-unifrac-dbgsym, directory debian/.debhelper/python3-unifrac/dbgsym-root dpkg-deb: building package 'python3-unifrac-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-unifrac/python3-unifrac-dbgsym_0.10.0-3_ppc64el.deb'. Renaming python3-unifrac-dbgsym_0.10.0-3_ppc64el.deb to python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb pkgstripfiles: Running PNG optimization (using 4 cpus) for package libssu0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libssu0' in '../libssu0_0.10.0-3_ppc64el.deb'. Searching for duplicated docs in dependency libssu0... symlinking changelog.Debian.gz in libssu-dev to file in libssu0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libssu-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libssu-dev' in '../libssu-dev_0.10.0-3_ppc64el.deb'. INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libssu-tools (in debian/libssu-tools); do_strip: , oemstrip: pkgstriptranslations: processing libssu0-dbgsym (in debian/.debhelper/libssu0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libssu-tools/DEBIAN/control, package libssu-tools, directory debian/libssu-tools Searching for duplicated docs in dependency libssu0... pkgstripfiles: processing control file: debian/.debhelper/libssu0/dbgsym-root/DEBIAN/control, package libssu0-dbgsym, directory debian/.debhelper/libssu0/dbgsym-root dpkg-deb: building package 'libssu0-dbgsym' in 'debian/.debhelper/scratch-space/build-libssu0/libssu0-dbgsym_0.10.0-3_ppc64el.deb'. symlinking changelog.Debian.gz in libssu-tools to file in libssu0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libssu-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libssu-tools' in '../libssu-tools_0.10.0-3_ppc64el.deb'. Renaming libssu0-dbgsym_0.10.0-3_ppc64el.deb to libssu0-dbgsym_0.10.0-3_ppc64el.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libssu-tools/dbgsym-root/DEBIAN/control, package libssu-tools-dbgsym, directory debian/.debhelper/libssu-tools/dbgsym-root dpkg-deb: building package 'libssu-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-libssu-tools/libssu-tools-dbgsym_0.10.0-3_ppc64el.deb'. Renaming libssu-tools-dbgsym_0.10.0-3_ppc64el.deb to libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../unifrac_0.10.0-3_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-30T12:29:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ unifrac_0.10.0-3_ppc64el.changes: --------------------------------- Format: 1.8 Date: Tue, 14 Sep 2021 17:39:15 +0530 Source: unifrac Binary: libssu-dev libssu-tools libssu0 python3-unifrac Built-For-Profiles: noudeb Architecture: ppc64el Version: 0.10.0-3 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steffen Moeller Description: libssu-dev - high-performance phylogenetic diversity calculations (dev) libssu-tools - high-performance phylogenetic diversity calculations (binaries) libssu0 - high-performance phylogenetic diversity calculations (lib) python3-unifrac - high-performance phylogenetic diversity calculations Changes: unifrac (0.10.0-3) unstable; urgency=medium . * Team Upload. * d/rules: better clean-up * removed -mfma to avoid illegal instruction error on older machines Checksums-Sha1: c138ee74f958587f34dc950161d98afc9fa61bd5 10296 libssu-dev_0.10.0-3_ppc64el.deb 7892ebd8d967e1bda8b4e979bf33bc14c47668a1 1303836 libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb 12c1b308abf1506fe3f457f65ece431f485d40bf 1616496 libssu-tools_0.10.0-3_ppc64el.deb aa58873b90b8144b854bcc861a1f2ad9dfc3eb4b 663004 libssu0-dbgsym_0.10.0-3_ppc64el.ddeb 405f0c68a81a4e18ca9c3780c43de596643fd783 60718 libssu0_0.10.0-3_ppc64el.deb eb42380254820b3883bc3ef2420253f16ecfe4cc 907160 python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb 72f0d2a8ece41381edd8a4862f21ee3febb6bf23 163486 python3-unifrac_0.10.0-3_ppc64el.deb 71e4f480cdeecf3dca875bfb5492c29780935115 12902 unifrac_0.10.0-3_ppc64el.buildinfo Checksums-Sha256: d9bc4651be09ba00678de34fdaea3da60a1e132855384cd81293c1a08dd9baa7 10296 libssu-dev_0.10.0-3_ppc64el.deb 8b0a44f56ef4ac995533f01086672f8cd5b78cb14eb62da00de99bf418b57622 1303836 libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb 3d5cce78f56b4c6896fb9ad8ecfda1ee79dd50cbb6ff37b85118875171f366cd 1616496 libssu-tools_0.10.0-3_ppc64el.deb 501808e65655aeeebfcea60d29259808798c56b7222c1ee19a2b14fc409173cc 663004 libssu0-dbgsym_0.10.0-3_ppc64el.ddeb 51f3d5c94648f9f63e5812d72b4135c5d5ad053d6c7b1d7dda5cd8b07b39a03e 60718 libssu0_0.10.0-3_ppc64el.deb 6705052bc1d8c76de3490ce3aeb6a4adfa0e3a6eb61190eb2beb152e7ec8652e 907160 python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb b56cd229c65dbd3067d8e64bc230b57f56553b8f7c92f60cd992a7e748d68f02 163486 python3-unifrac_0.10.0-3_ppc64el.deb 2028faa11f57e3b18cc7a4a04a5c7d49d51017280addf3d9a47f704973715414 12902 unifrac_0.10.0-3_ppc64el.buildinfo Files: d152676d66aa5ab70e3241c4d74b1a66 10296 libdevel optional libssu-dev_0.10.0-3_ppc64el.deb 52b4ecb8642d79127af304ab4209a745 1303836 debug optional libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb 7e7650dd8ec8f1c1003464aadd80d8b1 1616496 science optional libssu-tools_0.10.0-3_ppc64el.deb ea6eb38da4937d7d7e518c6d69246a5e 663004 debug optional libssu0-dbgsym_0.10.0-3_ppc64el.ddeb dbaf1708a93ecdd3c0253c0367bfad36 60718 libs optional libssu0_0.10.0-3_ppc64el.deb ac86f779429fc970414d96fa42e94cba 907160 debug optional python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb 74b7adcb903e83a4d7155247ceb15791 163486 python optional python3-unifrac_0.10.0-3_ppc64el.deb 3424346a7b76a27db243d01b2874336f 12902 science optional unifrac_0.10.0-3_ppc64el.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: unifrac Binary: libssu-dev libssu-tools libssu-tools-dbgsym libssu0 libssu0-dbgsym python3-unifrac python3-unifrac-dbgsym Architecture: ppc64el Version: 0.10.0-3 Checksums-Md5: d152676d66aa5ab70e3241c4d74b1a66 10296 libssu-dev_0.10.0-3_ppc64el.deb 52b4ecb8642d79127af304ab4209a745 1303836 libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb 7e7650dd8ec8f1c1003464aadd80d8b1 1616496 libssu-tools_0.10.0-3_ppc64el.deb ea6eb38da4937d7d7e518c6d69246a5e 663004 libssu0-dbgsym_0.10.0-3_ppc64el.ddeb dbaf1708a93ecdd3c0253c0367bfad36 60718 libssu0_0.10.0-3_ppc64el.deb ac86f779429fc970414d96fa42e94cba 907160 python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb 74b7adcb903e83a4d7155247ceb15791 163486 python3-unifrac_0.10.0-3_ppc64el.deb Checksums-Sha1: c138ee74f958587f34dc950161d98afc9fa61bd5 10296 libssu-dev_0.10.0-3_ppc64el.deb 7892ebd8d967e1bda8b4e979bf33bc14c47668a1 1303836 libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb 12c1b308abf1506fe3f457f65ece431f485d40bf 1616496 libssu-tools_0.10.0-3_ppc64el.deb aa58873b90b8144b854bcc861a1f2ad9dfc3eb4b 663004 libssu0-dbgsym_0.10.0-3_ppc64el.ddeb 405f0c68a81a4e18ca9c3780c43de596643fd783 60718 libssu0_0.10.0-3_ppc64el.deb eb42380254820b3883bc3ef2420253f16ecfe4cc 907160 python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb 72f0d2a8ece41381edd8a4862f21ee3febb6bf23 163486 python3-unifrac_0.10.0-3_ppc64el.deb Checksums-Sha256: d9bc4651be09ba00678de34fdaea3da60a1e132855384cd81293c1a08dd9baa7 10296 libssu-dev_0.10.0-3_ppc64el.deb 8b0a44f56ef4ac995533f01086672f8cd5b78cb14eb62da00de99bf418b57622 1303836 libssu-tools-dbgsym_0.10.0-3_ppc64el.ddeb 3d5cce78f56b4c6896fb9ad8ecfda1ee79dd50cbb6ff37b85118875171f366cd 1616496 libssu-tools_0.10.0-3_ppc64el.deb 501808e65655aeeebfcea60d29259808798c56b7222c1ee19a2b14fc409173cc 663004 libssu0-dbgsym_0.10.0-3_ppc64el.ddeb 51f3d5c94648f9f63e5812d72b4135c5d5ad053d6c7b1d7dda5cd8b07b39a03e 60718 libssu0_0.10.0-3_ppc64el.deb 6705052bc1d8c76de3490ce3aeb6a4adfa0e3a6eb61190eb2beb152e7ec8652e 907160 python3-unifrac-dbgsym_0.10.0-3_ppc64el.ddeb b56cd229c65dbd3067d8e64bc230b57f56553b8f7c92f60cd992a7e748d68f02 163486 python3-unifrac_0.10.0-3_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Tue, 30 Nov 2021 12:29:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), binutils-powerpc64le-linux-gnu (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), chrpath (= 0.16-2), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), cython3 (= 0.29.24-0ubuntu3), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-exec (= 0.23.4build1), dh-python (= 5.20211114), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fonts-dejavu-core (= 2.37-2build1), fonts-lyx (= 2.3.6-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hdf5-helpers (= 1.10.7+repack-4ubuntu1), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-10ubuntu1), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.37.2-4ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl4 (= 7.74.0-1.3ubuntu2), libcurl4-openssl-dev (= 7.74.0-1.3ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.186-1), libedit2 (= 3.1-20210910-1), libelf1 (= 0.186-1), libexpat1 (= 2.4.1-3), libexpat1-dev (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran5 (= 11.2.0-12ubuntu1), libglib2.0-0 (= 2.70.1-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhdf5-103-1 (= 1.10.7+repack-4ubuntu1), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu1), libhdf5-dev (= 1.10.7+repack-4ubuntu1), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu1), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu1), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu1), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu1), libhogweed6 (= 3.7.3-1build1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libimagequant0 (= 2.12.2-1.1build1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-12ubuntu1), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-jquery-ui (= 1.13.0+dfsg-1), libjs-sphinxdoc (= 4.3.1-1), libjs-underscore (= 1.9.1~dfsg-4), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack3 (= 3.9.0-3ubuntu3), liblbfgsb0 (= 3.0+dfsg.3-9), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblsan0 (= 11.2.0-12ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzf1 (= 3.6-3), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncurses6 (= 6.3-1), libncursesw6 (= 6.3-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libopenjp2-7 (= 2.4.0-3), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpng16-16 (= 1.6.37-3build4), libprocps8 (= 2:3.3.17-5ubuntu3), libpsl5 (= 0.21.0-1.2build1), libpython3-all-dev (= 3.9.7-4), libpython3-dev (= 3.9.7-4), libpython3-stdlib (= 3.9.7-4), libpython3.10 (= 3.10.0-5build1), libpython3.10-dev (= 3.10.0-5build1), libpython3.10-minimal (= 3.10.0-5build1), libpython3.10-stdlib (= 3.10.0-5build1), libpython3.9 (= 3.9.9-1build1), libpython3.9-dev (= 3.9.9-1build1), libpython3.9-minimal (= 3.9.9-1build1), libpython3.9-stdlib (= 3.9.9-1build1), libqhull-r8.0 (= 2020.2-4), libquadmath0 (= 11.2.0-12ubuntu1), libraqm0 (= 0.7.0-4), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libsqlite3-0 (= 3.36.0-2), libssh-4 (= 0.9.6-1), libssl-dev (= 3.0.0-1ubuntu1), libssl1.1 (= 1.1.1l-1ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libssw0 (= 1.1-13), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtiff5 (= 4.3.0-2), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-12ubuntu1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libwebp6 (= 0.6.1-2.1build1), libwebpdemux2 (= 0.6.1-2.1build1), libwebpmux3 (= 0.6.1-2.1build1), libxau6 (= 1:1.0.9-1build4), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5), libxslt1.1 (= 1.1.34-4build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-12.12), login (= 1:4.8.1-1ubuntu10), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), mailcap (= 3.70ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), media-types (= 4.0.0), mime-support (= 3.66), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), openssl (= 3.0.0-1ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-5ubuntu3), python-matplotlib-data (= 3.5.0-2), python3 (= 3.9.7-4), python3-all (= 3.9.7-4), python3-all-dev (= 3.9.7-4), python3-appdirs (= 1.4.4-1), python3-attr (= 20.3.0-1ubuntu1), python3-backcall (= 0.2.0-2), python3-biom-format (= 2.1.10-2ubuntu1), python3-brotli (= 1.0.9-2build4), python3-cachecontrol (= 0.12.10-1), python3-certifi (= 2020.6.20-1), python3-chardet (= 4.0.0-1), python3-click (= 8.0.2-1), python3-colorama (= 0.4.4-1), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.9.7-4), python3-distutils (= 3.9.9-2), python3-fonttools (= 4.27.1-1), python3-fs (= 2.4.12-1), python3-h5py (= 3.3.0-4ubuntu1), python3-h5py-serial (= 3.3.0-4ubuntu1), python3-hdmedians (= 0.14.2-1), python3-idna (= 2.10-1), python3-ipython (= 7.27.0-1), python3-jedi (= 0.18.0-1), python3-joblib (= 0.17.0-4ubuntu1), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.9.9-2), python3-lockfile (= 1:0.12.2-2.2), python3-lxml (= 4.6.4-1), python3-lz4 (= 3.1.3+dfsg-1build2), python3-matplotlib (= 3.5.0-2), python3-matplotlib-inline (= 0.1.3-1), python3-minimal (= 3.9.7-4), python3-mpmath (= 1.2.1-2), python3-msgpack (= 1.0.2-2), python3-natsort (= 7.1.0-1), python3-numpy (= 1:1.21.4-2), python3-packaging (= 21.3-1), python3-pandas (= 1.1.5+dfsg-2ubuntu1), python3-pandas-lib (= 1.1.5+dfsg-2ubuntu1), python3-parso (= 0.8.1-1), python3-pexpect (= 4.8.0-2ubuntu1), python3-pickleshare (= 0.7.5-5), python3-pil (= 8.4.0-1), python3-pkg-resources (= 59.2.0-1), python3-prompt-toolkit (= 3.0.22-1), python3-ptyprocess (= 0.7.0-2), python3-pygments (= 2.7.1+dfsg-2.1), python3-pyparsing (= 2.4.7-1), python3-requests (= 2.25.1+dfsg-2), python3-scipy (= 1.7.1-1ubuntu1), python3-setuptools (= 59.2.0-1), python3-six (= 1.16.0-2), python3-skbio (= 0.5.6-5ubuntu1), python3-sklearn (= 0.23.2-5ubuntu4), python3-sklearn-lib (= 0.23.2-5ubuntu4), python3-sympy (= 1.7.1-3), python3-threadpoolctl (= 2.1.0-1), python3-traitlets (= 5.1.1-1), python3-tz (= 2021.3-1), python3-ufolib2 (= 0.11.1+dfsg1-1), python3-urllib3 (= 1.26.5-1~exp1), python3-wcwidth (= 0.1.9+dfsg1-2), python3.10 (= 3.10.0-5build1), python3.10-dev (= 3.10.0-5build1), python3.10-minimal (= 3.10.0-5build1), python3.9 (= 3.9.9-1build1), python3.9-dev (= 3.9.9-1build1), python3.9-minimal (= 3.9.9-1build1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), unicode-data (= 14.0.0-1.1), util-linux (= 2.37.2-4ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1631621355" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libssu-dev_0.10.0-3_ppc64el.deb ------------------------------- new Debian package, version 2.0. size 10296 bytes: control archive=1008 bytes. 1088 bytes, 23 lines control 581 bytes, 9 lines md5sums Package: libssu-dev Source: unifrac Version: 0.10.0-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 53 Depends: libssu0 (= 0.10.0-3) Section: libdevel Priority: optional Homepage: https://github.com/biocore/unifrac Description: high-performance phylogenetic diversity calculations (dev) The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the static library and header files. drwxr-xr-x root/root 0 2021-09-14 12:09 ./ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/include/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/include/sucpp/ -rw-r--r-- root/root 3318 2019-07-08 20:22 ./usr/include/sucpp/affinity.hpp -rw-r--r-- root/root 10499 2019-07-08 20:22 ./usr/include/sucpp/api.hpp -rw-r--r-- root/root 3410 2019-07-08 20:22 ./usr/include/sucpp/biom.hpp -rw-r--r-- root/root 1056 2019-07-08 20:22 ./usr/include/sucpp/cmd.hpp -rw-r--r-- root/root 1098 2019-07-08 20:22 ./usr/include/sucpp/task_parameters.hpp -rw-r--r-- root/root 4660 2019-07-08 20:22 ./usr/include/sucpp/tree.hpp -rw-r--r-- root/root 3523 2019-07-08 20:22 ./usr/include/sucpp/unifrac.hpp -rw-r--r-- root/root 6101 2019-07-08 20:22 ./usr/include/sucpp/unifrac_task.hpp drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2021-09-14 12:09 ./usr/lib/powerpc64le-linux-gnu/libssu.so -> libssu.so.0 drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/libssu-dev/ lrwxrwxrwx root/root 0 2021-09-14 12:09 ./usr/share/doc/libssu-dev/changelog.Debian.gz -> ../libssu0/changelog.Debian.gz -rw-r--r-- root/root 2743 2021-09-14 12:07 ./usr/share/doc/libssu-dev/copyright libssu-tools_0.10.0-3_ppc64el.deb --------------------------------- new Debian package, version 2.0. size 1616496 bytes: control archive=935 bytes. 1176 bytes, 23 lines control 295 bytes, 5 lines md5sums Package: libssu-tools Source: unifrac Version: 0.10.0-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 10426 Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.2), libstdc++6 (>= 11), libsz2 (>= 1.0.6), zlib1g (>= 1:1.1.4), libssu0 Section: science Priority: optional Homepage: https://github.com/biocore/unifrac Description: high-performance phylogenetic diversity calculations (binaries) The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains target binaries ssu and faithpd drwxr-xr-x root/root 0 2021-09-14 12:09 ./ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/bin/ -rwxr-xr-x root/root 5329448 2021-09-14 12:09 ./usr/bin/faithpd -rwxr-xr-x root/root 5329448 2021-09-14 12:09 ./usr/bin/ssu drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/libssu-tools/ lrwxrwxrwx root/root 0 2021-09-14 12:09 ./usr/share/doc/libssu-tools/changelog.Debian.gz -> ../libssu0/changelog.Debian.gz -rw-r--r-- root/root 2743 2021-09-14 12:07 ./usr/share/doc/libssu-tools/copyright drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/man/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/man/man1/ -rw-r--r-- root/root 456 2021-09-14 12:09 ./usr/share/man/man1/faithpd.1.gz -rw-r--r-- root/root 1330 2021-09-14 12:09 ./usr/share/man/man1/ssu.1.gz libssu0_0.10.0-3_ppc64el.deb ---------------------------- new Debian package, version 2.0. size 60718 bytes: control archive=993 bytes. 1146 bytes, 23 lines control 218 bytes, 3 lines md5sums 29 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libssu0 Source: unifrac Version: 0.10.0-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 209 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libhdf5-103-1, libhdf5-cpp-103-1 (>= 1.10.5), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://github.com/biocore/unifrac Description: high-performance phylogenetic diversity calculations (lib) The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the shared library. drwxr-xr-x root/root 0 2021-09-14 12:09 ./ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 198688 2021-09-14 12:09 ./usr/lib/powerpc64le-linux-gnu/libssu.so.0 drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/libssu0/ -rw-r--r-- root/root 329 2021-09-14 12:09 ./usr/share/doc/libssu0/changelog.Debian.gz -rw-r--r-- root/root 2743 2021-09-14 12:07 ./usr/share/doc/libssu0/copyright python3-unifrac_0.10.0-3_ppc64el.deb ------------------------------------ new Debian package, version 2.0. size 163486 bytes: control archive=1825 bytes. 1259 bytes, 23 lines control 1970 bytes, 21 lines md5sums 271 bytes, 12 lines * postinst #!/bin/sh 420 bytes, 12 lines * prerm #!/bin/sh Package: python3-unifrac Source: unifrac Version: 0.10.0-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 978 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libssu0 (>= 0.10.0), libstdc++6 (>= 11), cython3, python3 (<< 3.11), python3 (>= 3.9~), python3-biom-format, python3-h5py-serial, python3-numpy, python3-skbio, python3:any Section: python Priority: optional Homepage: https://github.com/biocore/unifrac Description: high-performance phylogenetic diversity calculations The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation. . This package contains the Python3 module. drwxr-xr-x root/root 0 2021-09-14 12:09 ./ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac-0.10.0.egg-info/ -rw-r--r-- root/root 10423 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac-0.10.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac-0.10.0.egg-info/dependency_links.txt -rw-r--r-- root/root 100 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac-0.10.0.egg-info/requires.txt -rw-r--r-- root/root 8 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac-0.10.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac/ -rw-r--r-- root/root 733 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac/__init__.py -rw-r--r-- root/root 341144 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac/_api.cpython-310-powerpc64le-linux-gnu.so -rw-r--r-- root/root 341144 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac/_api.cpython-39-powerpc64le-linux-gnu.so -rw-r--r-- root/root 3824 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/_meta.py -rw-r--r-- root/root 15416 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/_methods.py drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac/tests/ -rw-r--r-- root/root 349 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/__init__.py drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/lib/python3/dist-packages/unifrac/tests/data/ -rw-r--r-- root/root 137185 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/crawford.biom -rw-r--r-- root/root 9394 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/crawford.tre -rw-r--r-- root/root 33840 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/e1.biom -rw-r--r-- root/root 33840 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/e2.biom -rw-r--r-- root/root 35 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/t1.newick -rw-r--r-- root/root 27 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/t2.newick -rw-r--r-- root/root 276 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/data/test.faith.exp -rw-r--r-- root/root 33069 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/test_api.py -rw-r--r-- root/root 3687 2019-07-08 20:22 ./usr/lib/python3/dist-packages/unifrac/tests/test_methods.py drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/doc/python3-unifrac/ lrwxrwxrwx root/root 0 2021-09-14 12:09 ./usr/share/doc/python3-unifrac/changelog.Debian.gz -> ../libssu0/changelog.Debian.gz -rw-r--r-- root/root 2743 2021-09-14 12:07 ./usr/share/doc/python3-unifrac/copyright drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-09-14 12:09 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 118 2021-09-14 12:07 ./usr/share/lintian/overrides/python3-unifrac +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: n/a Build-Time: 132 Distribution: jammy-proposed Host Architecture: ppc64el Install-Time: 72 Job: unifrac_0.10.0-3.dsc Machine Architecture: ppc64el Package: unifrac Package-Time: 205 Source-Version: 0.10.0-3 Space: n/a Status: successful Version: 0.10.0-3 -------------------------------------------------------------------------------- Finished at 2021-11-30T12:29:02Z Build needed 00:03:25, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22312174 Scanning for processes to kill in build PACKAGEBUILD-22312174