https://launchpad.net/ubuntu/+source/voronota/1.21.3070-1/+build/20211856 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-002 4.15.0-121-generic #123-Ubuntu SMP Mon Oct 5 16:15:50 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 29 Oct 06:07:41 ntpdate[1747]: adjust time server 10.211.37.1 offset -0.000202 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20211856 --image-type chroot /home/buildd/filecache-default/9aaab3d1c3367126bc5b66d2474faf9141147628 Creating target for build PACKAGEBUILD-20211856 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20211856 Starting target for build PACKAGEBUILD-20211856 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20211856 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20211856 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20211856 Updating target for build PACKAGEBUILD-20211856 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [114 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x Packages [1320 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe s390x Packages [12.5 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5262 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x Packages [191 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [73.6 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x Packages [971 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [584 kB] Fetched 21.9 MB in 4s (5553 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-s390x-linux-gnu cpp-10 g++-10 gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libgcc-10-dev libgcc-s1 libgomp1 libitm1 libmpc3 libncurses6 libncursesw6 libnpth0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 ncurses-base ncurses-bin sysvinit-utils tzdata 47 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 194 MB of archives. After this operation, 772 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcrypt-dev s390x 1:4.4.17-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcrypt1 s390x 1:4.4.17-1ubuntu1 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x base-files s390x 11ubuntu16 [60.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncursesw6 s390x 6.2+20200918-1 [136 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses6 s390x 6.2+20200918-1 [106 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtinfo6 s390x 6.2+20200918-1 [92.5 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-bin s390x 6.2+20200918-1 [176 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libdebconfclient0 s390x 0.254ubuntu1 [6056 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x base-passwd s390x 3.5.48 [48.5 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-base all 6.2+20200918-1 [18.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main s390x sysvinit-utils s390x 2.96-5ubuntu1 [20.6 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libcc1-0 s390x 10.2.0-15ubuntu1 [39.3 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-10-base s390x 10.2.0-15ubuntu1 [19.5 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcc-s1 s390x 10.2.0-15ubuntu1 [30.4 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x libgomp1 s390x 10.2.0-15ubuntu1 [115 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main s390x libitm1 s390x 10.2.0-15ubuntu1 [28.6 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x libatomic1 s390x 10.2.0-15ubuntu1 [8388 B] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x libasan6 s390x 10.2.0-15ubuntu1 [351 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x libubsan1 s390x 10.2.0-15ubuntu1 [155 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x g++-10 s390x 10.2.0-15ubuntu1 [63.1 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x libstdc++-10-dev s390x 10.2.0-15ubuntu1 [1710 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcc-10-dev s390x 10.2.0-15ubuntu1 [778 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main s390x gcc-10 s390x 10.2.0-15ubuntu1 [63.8 MB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main s390x cpp-10 s390x 10.2.0-15ubuntu1 [56.7 MB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main s390x libstdc++6 s390x 10.2.0-15ubuntu1 [519 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libmpc3 s390x 1.2.0-1 [43.6 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf-nobfd0 s390x 2.35.1-2ubuntu1 [50.4 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf0 s390x 2.35.1-2ubuntu1 [49.5 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libbinutils s390x 2.35.1-2ubuntu1 [338 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-common s390x 2.35.1-2ubuntu1 [212 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils s390x 2.35.1-2ubuntu1 [3344 B] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-s390x-linux-gnu s390x 2.35.1-2ubuntu1 [1691 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libapt-pkg6.0 s390x 2.1.11 [848 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libseccomp2 s390x 2.4.3-1ubuntu5 [56.3 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x apt s390x 2.1.11 [1285 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit1 s390x 1:2.8.5-3ubuntu2 [38.1 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main s390x libselinux1 s390x 3.1-2build1 [75.3 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage-common all 3.1-1build1 [10.1 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage1 s390x 3.1-1build1 [88.2 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-common all 1.2.6-3 [7444 B] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-dev s390x 1.2.6-3 [190 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc3 s390x 1.2.6-3 [75.2 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libapparmor1 s390x 3.0.0-0ubuntu2 [36.6 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcap2 s390x 1:2.44-1 [18.3 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main s390x tzdata all 2020d-1ubuntu1 [293 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libnpth0 s390x 1.6-3 [8048 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 194 MB in 5s (40.7 MB/s) (Reading database ... 12766 files and directories currently installed.) 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Setting up base-passwd (3.5.48) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20200918-1_all.deb ... Unpacking ncurses-base (6.2+20200918-1) over (6.2-1) ... Setting up ncurses-base (6.2+20200918-1) ... (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_s390x.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../libcc1-0_10.2.0-15ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... 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Setting up libtirpc-dev:s390x (1.2.6-3) ... Setting up libncurses6:s390x (6.2+20200918-1) ... Setting up libmpc3:s390x (1.2.0-1) ... Setting up libatomic1:s390x (10.2.0-15ubuntu1) ... Setting up libncursesw6:s390x (6.2+20200918-1) ... Setting up libubsan1:s390x (10.2.0-15ubuntu1) ... Setting up libcrypt-dev:s390x (1:4.4.17-1ubuntu1) ... Setting up libbinutils:s390x (2.35.1-2ubuntu1) ... Setting up libcc1-0:s390x (10.2.0-15ubuntu1) ... Setting up cpp-10 (10.2.0-15ubuntu1) ... Setting up libitm1:s390x (10.2.0-15ubuntu1) ... Setting up libctf0:s390x (2.35.1-2ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.35.1-2ubuntu1) ... Setting up libgcc-10-dev:s390x (10.2.0-15ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up gcc-10 (10.2.0-15ubuntu1) ... Setting up libstdc++-10-dev:s390x (10.2.0-15ubuntu1) ... Setting up g++-10 (10.2.0-15ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20211856 s390x hirsute-proposed -c chroot:build-PACKAGEBUILD-20211856 --arch=s390x --dist=hirsute-proposed --nolog voronota_1.21.3070-1.dsc Initiating build PACKAGEBUILD-20211856 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-121-generic #123-Ubuntu SMP Mon Oct 5 16:15:50 UTC 2020 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-002.buildd +==============================================================================+ | voronota 1.21.3070-1 (s390x) Thu, 29 Oct 2020 06:08:20 +0000 | +==============================================================================+ Package: voronota Version: 1.21.3070-1 Source Version: 1.21.3070-1 Distribution: hirsute-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20211856/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- voronota_1.21.3070-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/voronota-EOUPM8/voronota-1.21.3070' with '<>' I: NOTICE: Log filtering will replace 'build/voronota-EOUPM8' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-xcj4iR/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-xcj4iR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xcj4iR/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-xcj4iR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xcj4iR/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-xcj4iR/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-xcj4iR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12764 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man Filtered Build-Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'sbuild-build-depends-voronota-dummy' in '/<>/resolver-xcj4iR/apt_archive/sbuild-build-depends-voronota-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-voronota-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-xcj4iR/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xcj4iR/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-xcj4iR/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xcj4iR/apt_archive ./ Sources [499 B] Get:5 copy:/<>/resolver-xcj4iR/apt_archive ./ Packages [579 B] Fetched 2041 B in 0s (0 B/s) Reading package lists... Reading package lists... Install voronota build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 liblocale-gettext-perl libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-voronota-dummy 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 17.2 MB of archives. After this operation, 69.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-xcj4iR/apt_archive ./ sbuild-build-depends-voronota-dummy 0.invalid.0 [864 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main s390x liblocale-gettext-perl s390x 1.07-4 [16.5 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdextrautils s390x 2.36-3ubuntu1 [77.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic-mgc s390x 1:5.38-5 [219 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic1 s390x 1:5.38-5 [72.9 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main s390x file s390x 1:5.38-5 [23.1 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main s390x libelf1 s390x 0.181-1 [48.0 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libglib2.0-0 s390x 2.66.1-2 [1319 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libicu67 s390x 67.1-4 [8473 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libxml2 s390x 2.9.10+dfsg-6.1 [644 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main s390x libsigsegv2 s390x 2.12-2build1 [13.7 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x m4 s390x 1.4.18-4 [196 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x automake all 1:1.16.2-4ubuntu1 [548 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x dwz s390x 0.13-5 [146 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main s390x debhelper all 13.2.1ubuntu1 [879 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/universe s390x help2man s390x 1.47.16 [173 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.2 MB in 0s (47.6 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12764 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-4_s390x.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../01-bsdextrautils_2.36-3ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../02-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.3-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.3-2_s390x.deb ... Unpacking man-db (2.9.3-2) ... 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Setting up bsdextrautils (2.36-3ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:s390x (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.66.1-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libmagic1:s390x (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:s390x (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:s390x (0.181-1) ... Setting up libxml2:s390x (2.9.10+dfsg-6.1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up help2man (1.47.16) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-voronota-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-121-generic s390x (s390x) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-15ubuntu1 gcc-10_10.2.0-15ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-15ubuntu1 libstdc++6_10.2.0-15ubuntu1 linux-libc-dev_5.8.0-25.26 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.0-6ubuntu2 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-s390x-linux-gnu_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-15ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.2-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-15ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-15ubuntu1 gcc-10-base_10.2.0-15ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 help2man_1.47.16 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu2 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-15ubuntu1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-15ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-2ubuntu1 libblkid1_2.36-3ubuntu1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcc1-0_10.2.0-15ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.254ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.181-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.2-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-15ubuntu1 libgcc-s1_10.2.0-15ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-15ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libip4tc2_1.8.5-3ubuntu1 libisl22_0.22.1-1 libitm1_10.2.0-15ubuntu1 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-15ubuntu1 libstdc++6_10.2.0-15ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-15ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-1ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libxml2_2.9.10+dfsg-6.1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-25.26 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-voronota-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-1ubuntu1 systemd-sysv_246.6-1ubuntu1 systemd-timesyncd_246.6-1ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Sep 8 11:43:37 2020 UTC gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./voronota_1.21.3070-1.dsc dpkg-source: info: extracting voronota in /<> dpkg-source: info: unpacking voronota_1.21.3070.orig.tar.xz dpkg-source: info: unpacking voronota_1.21.3070-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20211856 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20211856 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20211856 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.21.3070-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/voronota.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. Makefile.am:2: warning: source file 'src/modes/mode_query_balls_clashes.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_get_balls_from_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_reprint_hbp.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_hypercut.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_solvation_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_quality.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_compare_files_as_sets.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_balls.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_place_membrane.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_potentials_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_compare_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_energy.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_plot_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_potential.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_vectorize_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_split_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_scores.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_mock_solvent.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_global_energy_by_cuts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_interface_exposure_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_balls_sequences_pairings_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_simulating_unfolding.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_ses.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_rotational_optimization_demo.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_vertices_in_parallel.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_vectorize_contact_environments.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_blank.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_write_qa_scores_in_casp_format.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_vertices.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_write_balls_to_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_draw_balls.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_run_script.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_expand_descriptors.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_simulate_potential_for_membrane_proteins.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_draw_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_vectorize_points.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_draw_values_bitmap.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_polygon_triangulation.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_energy_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_path_centralities.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_balls_distances.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_depth_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o voronota.o `test -f 'src/voronota.cpp' || echo './'`src/voronota.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_clashes.o `test -f 'src/modes/mode_query_balls_clashes.cpp' || echo './'`src/modes/mode_query_balls_clashes.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_get_balls_from_atoms_file.o `test -f 'src/modes/mode_get_balls_from_atoms_file.cpp' || echo './'`src/modes/mode_get_balls_from_atoms_file.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_reprint_hbp.o `test -f 'src/modes/mode_reprint_hbp.cpp' || echo './'`src/modes/mode_reprint_hbp.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_hypercut.o `test -f 'src/modes/mode_demo_hypercut.cpp' || echo './'`src/modes/mode_demo_hypercut.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_solvation_values.o `test -f 'src/modes/mode_query_contacts_solvation_values.cpp' || echo './'`src/modes/mode_query_contacts_solvation_values.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_quality.o `test -f 'src/modes/mode_score_contacts_quality.cpp' || echo './'`src/modes/mode_score_contacts_quality.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_compare_files_as_sets.o `test -f 'src/modes/mode_compare_files_as_sets.cpp' || echo './'`src/modes/mode_compare_files_as_sets.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls.o `test -f 'src/modes/mode_query_balls.cpp' || echo './'`src/modes/mode_query_balls.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_place_membrane.o `test -f 'src/modes/mode_place_membrane.cpp' || echo './'`src/modes/mode_place_membrane.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_potentials_stats.o `test -f 'src/modes/mode_score_contacts_potentials_stats.cpp' || echo './'`src/modes/mode_score_contacts_potentials_stats.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_compare_contacts.o `test -f 'src/modes/mode_compare_contacts.cpp' || echo './'`src/modes/mode_compare_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_energy.o `test -f 'src/modes/mode_score_contacts_energy.cpp' || echo './'`src/modes/mode_score_contacts_energy.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_plot_contacts.o `test -f 'src/modes/mode_plot_contacts.cpp' || echo './'`src/modes/mode_plot_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_potential.o `test -f 'src/modes/mode_score_contacts_potential.cpp' || echo './'`src/modes/mode_score_contacts_potential.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_contacts.o `test -f 'src/modes/mode_vectorize_contacts.cpp' || echo './'`src/modes/mode_vectorize_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_split_atoms_file.o `test -f 'src/modes/mode_split_atoms_file.cpp' || echo './'`src/modes/mode_split_atoms_file.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_scores.o `test -f 'src/modes/mode_score_scores.cpp' || echo './'`src/modes/mode_score_scores.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_mock_solvent.o `test -f 'src/modes/mode_calculate_mock_solvent.cpp' || echo './'`src/modes/mode_calculate_mock_solvent.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_global_energy_by_cuts.o `test -f 'src/modes/mode_score_contacts_global_energy_by_cuts.cpp' || echo './'`src/modes/mode_score_contacts_global_energy_by_cuts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_interface_exposure_values.o `test -f 'src/modes/mode_query_contacts_interface_exposure_values.cpp' || echo './'`src/modes/mode_query_contacts_interface_exposure_values.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_sequences_pairings_stats.o `test -f 'src/modes/mode_query_balls_sequences_pairings_stats.cpp' || echo './'`src/modes/mode_query_balls_sequences_pairings_stats.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_contacts.o `test -f 'src/modes/mode_calculate_contacts.cpp' || echo './'`src/modes/mode_calculate_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_simulating_unfolding.o `test -f 'src/modes/mode_query_contacts_simulating_unfolding.cpp' || echo './'`src/modes/mode_query_contacts_simulating_unfolding.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_ses.o `test -f 'src/modes/mode_demo_ses.cpp' || echo './'`src/modes/mode_demo_ses.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_rotational_optimization_demo.o `test -f 'src/modes/mode_rotational_optimization_demo.cpp' || echo './'`src/modes/mode_rotational_optimization_demo.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_vertices_in_parallel.o `test -f 'src/modes/mode_calculate_vertices_in_parallel.cpp' || echo './'`src/modes/mode_calculate_vertices_in_parallel.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_contact_environments.o `test -f 'src/modes/mode_vectorize_contact_environments.cpp' || echo './'`src/modes/mode_vectorize_contact_environments.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_blank.o `test -f 'src/modes/mode_demo_blank.cpp' || echo './'`src/modes/mode_demo_blank.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_write_qa_scores_in_casp_format.o `test -f 'src/modes/mode_write_qa_scores_in_casp_format.cpp' || echo './'`src/modes/mode_write_qa_scores_in_casp_format.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_vertices.o `test -f 'src/modes/mode_calculate_vertices.cpp' || echo './'`src/modes/mode_calculate_vertices.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_write_balls_to_atoms_file.o `test -f 'src/modes/mode_write_balls_to_atoms_file.cpp' || echo './'`src/modes/mode_write_balls_to_atoms_file.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_balls.o `test -f 'src/modes/mode_draw_balls.cpp' || echo './'`src/modes/mode_draw_balls.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_run_script.o `test -f 'src/modes/mode_run_script.cpp' || echo './'`src/modes/mode_run_script.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_expand_descriptors.o `test -f 'src/modes/mode_expand_descriptors.cpp' || echo './'`src/modes/mode_expand_descriptors.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_simulate_potential_for_membrane_proteins.o `test -f 'src/modes/mode_simulate_potential_for_membrane_proteins.cpp' || echo './'`src/modes/mode_simulate_potential_for_membrane_proteins.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_contacts.o `test -f 'src/modes/mode_draw_contacts.cpp' || echo './'`src/modes/mode_draw_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_points.o `test -f 'src/modes/mode_vectorize_points.cpp' || echo './'`src/modes/mode_vectorize_points.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts.o `test -f 'src/modes/mode_query_contacts.cpp' || echo './'`src/modes/mode_query_contacts.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_values_bitmap.o `test -f 'src/modes/mode_draw_values_bitmap.cpp' || echo './'`src/modes/mode_draw_values_bitmap.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_polygon_triangulation.o `test -f 'src/modes/mode_demo_polygon_triangulation.cpp' || echo './'`src/modes/mode_demo_polygon_triangulation.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_energy_stats.o `test -f 'src/modes/mode_score_contacts_energy_stats.cpp' || echo './'`src/modes/mode_score_contacts_energy_stats.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_path_centralities.o `test -f 'src/modes/mode_calculate_path_centralities.cpp' || echo './'`src/modes/mode_calculate_path_centralities.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_distances.o `test -f 'src/modes/mode_query_balls_distances.cpp' || echo './'`src/modes/mode_query_balls_distances.cpp g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_depth_values.o `test -f 'src/modes/mode_query_contacts_depth_values.cpp' || echo './'`src/modes/mode_query_contacts_depth_values.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o voronota voronota.o mode_query_balls_clashes.o mode_get_balls_from_atoms_file.o mode_reprint_hbp.o mode_demo_hypercut.o mode_query_contacts_solvation_values.o mode_score_contacts_quality.o mode_compare_files_as_sets.o mode_query_balls.o mode_place_membrane.o mode_score_contacts_potentials_stats.o mode_compare_contacts.o mode_score_contacts_energy.o mode_plot_contacts.o mode_score_contacts_potential.o mode_vectorize_contacts.o mode_split_atoms_file.o mode_score_scores.o mode_calculate_mock_solvent.o mode_score_contacts_global_energy_by_cuts.o mode_query_contacts_interface_exposure_values.o mode_query_balls_sequences_pairings_stats.o mode_calculate_contacts.o mode_query_contacts_simulating_unfolding.o mode_demo_ses.o mode_rotational_optimization_demo.o mode_calculate_vertices_in_parallel.o mode_vectorize_contact_environments.o mode_demo_blank.o mode_write_qa_scores_in_casp_format.o mode_calculate_vertices.o mode_write_balls_to_atoms_file.o mode_draw_balls.o mode_run_script.o mode_expand_descriptors.o mode_simulate_potential_for_membrane_proteins.o mode_draw_contacts.o mode_vectorize_points.o mode_query_contacts.o mode_draw_values_bitmap.o mode_demo_polygon_triangulation.o mode_score_contacts_energy_stats.o mode_calculate_path_centralities.o mode_query_balls_distances.o mode_query_contacts_depth_values.o make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/debian/voronota AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' make[2]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/voronota/usr/bin' /bin/mkdir -p '/<>/debian/voronota/usr/bin' /bin/mkdir -p '/<>/debian/voronota/usr/share/man/man1' /usr/bin/install -c -m 644 'voronota.man' '/<>/debian/voronota/usr/share/man/man1/voronota.1' /usr/bin/install -c voronota-resources voronota-voromqa voronota-contacts voronota-cadscore voronota-volumes voronota-pocket voronota-membrane '/<>/debian/voronota/usr/bin' /usr/bin/install -c voronota '/<>/debian/voronota/usr/bin' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' for BIN in ./voronota-*; \ do \ grep -qle --help ${BIN} && help2man ${BIN} --version-string 1.21.3070 --no-discard-stderr --no-info > ${BIN}.1; \ done dh_installman make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing voronota (in debian/voronota); do_strip: , oemstrip: pkgstriptranslations: processing voronota-dbgsym (in debian/.debhelper/voronota/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/voronota/DEBIAN/control, package voronota, directory debian/voronota pkgstripfiles: Running PNG optimization (using 4 cpus) for package voronota ... pkgstripfiles: No PNG files. dpkg-deb: building package 'voronota' in '../voronota_1.21.3070-1_s390x.deb'. pkgstripfiles: processing control file: debian/.debhelper/voronota/dbgsym-root/DEBIAN/control, package voronota-dbgsym, directory debian/.debhelper/voronota/dbgsym-root dpkg-deb: building package 'voronota-dbgsym' in 'debian/.debhelper/scratch-space/build-voronota/voronota-dbgsym_1.21.3070-1_s390x.deb'. Renaming voronota-dbgsym_1.21.3070-1_s390x.deb to voronota-dbgsym_1.21.3070-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../voronota_1.21.3070-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-10-29T06:15:34Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ voronota_1.21.3070-1_s390x.changes: ----------------------------------- Format: 1.8 Date: Tue, 08 Sep 2020 07:27:59 -0400 Source: voronota Binary: voronota Architecture: s390x Version: 1.21.3070-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: voronota - Voronoi diagram-based tool to find atom contacts Changes: voronota (1.21.3070-1) unstable; urgency=medium . * New upstream version 1.21.3070 * Excluding prebuilt files. * Bumping debhelper-compat (no changes). * Generating manpages with help2man. * Removing unneeded lintian override. * Adding 'Rules-Requires-Root: no'. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: voronota Binary: voronota voronota-dbgsym Architecture: s390x Version: 1.21.3070-1 Checksums-Md5: 39bec2c76d630418414bc05aea98305d 27671336 voronota-dbgsym_1.21.3070-1_s390x.ddeb 935d4e3cfb7fdd333c6540ba722d9876 1912384 voronota_1.21.3070-1_s390x.deb Checksums-Sha1: 3cfd17b69803cc4b217e627c55784fe8a743d247 27671336 voronota-dbgsym_1.21.3070-1_s390x.ddeb 8363882d3fca28b4f6d68d8b82afe997b9b3d192 1912384 voronota_1.21.3070-1_s390x.deb Checksums-Sha256: f45a09bb938d038ad9ff5232a234de229efc24747a937fe58c2167d9988ca06d 27671336 voronota-dbgsym_1.21.3070-1_s390x.ddeb 04d7bcde13a15fe90cc513e80728b48bc78d686dccffcb0cb0e4bde3543189e4 1912384 voronota_1.21.3070-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 29 Oct 2020 06:15:34 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.0-6ubuntu2), binutils (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), binutils-s390x-linux-gnu (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-15ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-15ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-15ubuntu1), gcc-10-base (= 10.2.0-15ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), help2man (= 1.47.16), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-15ubuntu1), libatomic1 (= 10.2.0-15ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu3), libc-dev-bin (= 2.32-0ubuntu3), libc6 (= 2.32-0ubuntu3), libc6-dev (= 2.32-0ubuntu3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-15ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.254ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.181-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-15ubuntu1), libgcc-s1 (= 10.2.0-15ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.1-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-15ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-15ubuntu1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblocale-gettext-perl (= 1.07-4), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnss-nis (= 3.1-0ubuntu4), libnss-nisplus (= 1.3-0ubuntu4), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-15ubuntu1), libstdc++6 (= 10.2.0-15ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-1ubuntu1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-15ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libxml2 (= 2.9.10+dfsg-6.1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-25.26), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1599564479" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ voronota_1.21.3070-1_s390x.deb ------------------------------ new Debian package, version 2.0. size 1912384 bytes: control archive=1460 bytes. 1325 bytes, 25 lines control 1131 bytes, 17 lines md5sums Package: voronota Version: 1.21.3070-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 11200 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://bitbucket.org/kliment/voronota Description: Voronoi diagram-based tool to find atom contacts The analysis of macromolecular structures often requires a comprehensive definition of atomic neighborhoods. Such a definition can be based on the Voronoi diagram of balls, where each ball represents an atom of some van der Waals radius. Voronota is a software tool for finding all the vertices of the Voronoi diagram of balls. Such vertices correspond to the centers of the empty tangent spheres defined by quadruples of balls. Voronota is especially suitable for processing three-dimensional structures of biological macromolecules such as proteins and RNA. . Since version 1.2 Voronota also uses the Voronoi vertices to construct inter-atom contact surfaces and solvent accessible surfaces. Voronota provides tools to query contacts, generate contacts graphics, compare contacts and evaluate quality of protein structural models using contacts. drwxr-xr-x root/root 0 2020-09-08 11:27 ./ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/bin/ -rwxr-xr-x root/root 3356808 2020-09-08 11:27 ./usr/bin/voronota -rwxr-xr-x root/root 15580 2020-09-08 11:27 ./usr/bin/voronota-cadscore -rwxr-xr-x root/root 6286 2020-09-08 11:27 ./usr/bin/voronota-contacts -rwxr-xr-x root/root 6189 2020-09-08 11:27 ./usr/bin/voronota-membrane -rwxr-xr-x root/root 15341 2020-09-08 11:27 ./usr/bin/voronota-pocket -rwxr-xr-x root/root 7977431 2020-09-08 11:27 ./usr/bin/voronota-resources -rwxr-xr-x root/root 4414 2020-09-08 11:27 ./usr/bin/voronota-volumes -rwxr-xr-x root/root 59631 2020-09-08 11:27 ./usr/bin/voronota-voromqa drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/doc/voronota/ -rw-r--r-- root/root 701 2020-09-08 11:27 ./usr/share/doc/voronota/changelog.Debian.gz -rw-r--r-- root/root 1486 2020-09-08 09:09 ./usr/share/doc/voronota/copyright drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/man/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/man/man1/ -rw-r--r-- root/root 1055 2020-09-08 11:27 ./usr/share/man/man1/voronota-cadscore.1.gz -rw-r--r-- root/root 697 2020-09-08 11:27 ./usr/share/man/man1/voronota-contacts.1.gz -rw-r--r-- root/root 230 2020-09-08 11:27 ./usr/share/man/man1/voronota-membrane.1.gz -rw-r--r-- root/root 229 2020-09-08 11:27 ./usr/share/man/man1/voronota-pocket.1.gz -rw-r--r-- root/root 591 2020-09-08 11:27 ./usr/share/man/man1/voronota-volumes.1.gz -rw-r--r-- root/root 809 2020-09-08 11:27 ./usr/share/man/man1/voronota-voromqa.1.gz -rw-r--r-- root/root 1066 2020-09-08 11:27 ./usr/share/man/man1/voronota.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 427 Distribution: hirsute-proposed Host Architecture: s390x Install-Time: 6 Job: voronota_1.21.3070-1.dsc Machine Architecture: s390x Package: voronota Package-Time: 434 Source-Version: 1.21.3070-1 Space: n/a Status: successful Version: 1.21.3070-1 -------------------------------------------------------------------------------- Finished at 2020-10-29T06:15:34Z Build needed 00:07:14, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20211856 Scanning for processes to kill in build PACKAGEBUILD-20211856