https://launchpad.net/ubuntu/+source/votca-csg/1.4.1-1build3/+build/16343580 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-016 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_166 python-lpbuildd_166 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Feb 23:17:51 ntpdate[1835]: adjust time server 10.211.37.1 offset -0.011800 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16343580 /home/buildd/filecache-default/a8e076447bc9c859868a26138221e631724b6c90 Creating target for build PACKAGEBUILD-16343580 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16343580 Starting target for build PACKAGEBUILD-16343580 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16343580 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16343580 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16343580 Updating target for build PACKAGEBUILD-16343580 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [963 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8702 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5217 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [68.5 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [35.5 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [213 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [123 kB] Fetched 16.3 MB in 9s (1890 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libreadline8 The following packages will be upgraded: adduser apt bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils ca-certificates coreutils cpp-8 dash debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libjson-c3 liblz4-1 liblzma5 libmount1 libmpfr6 libnettle6 libpng16-16 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login lsb-base mount passwd readline-common sed systemd systemd-sysv tar tzdata util-linux xz-utils zlib1g 87 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 47.3 MB of archives. After this operation, 6070 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf debianutils armhf 4.8.6.1 [84.2 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf bash armhf 5.0-2ubuntu1 [581 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf bsdutils armhf 1:2.33.1-0.1ubuntu1 [58.0 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf coreutils armhf 8.30-1ubuntu1 [1126 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf tar armhf 1.30+dfsg-4 [218 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf dpkg armhf 1.19.2ubuntu2 [1056 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf debconf all 1.5.70 [122 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf dash armhf 0.5.10.2-4ubuntu1 [78.2 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf findutils armhf 4.6.0+git+20190105-2 [307 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf grep armhf 3.3-1 [138 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf gzip armhf 1.9-3 [89.8 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libsmartcols1 armhf 2.33.1-0.1ubuntu1 [80.7 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf libuuid1 armhf 2.33.1-0.1ubuntu1 [20.2 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libblkid1 armhf 2.33.1-0.1ubuntu1 [119 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf libfdisk1 armhf 2.33.1-0.1ubuntu1 [159 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libmount1 armhf 2.33.1-0.1ubuntu1 [129 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf fdisk armhf 2.33.1-0.1ubuntu1 [106 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf login armhf 1:4.5-1.1ubuntu1 [261 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf util-linux armhf 2.33.1-0.1ubuntu1 [925 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf sed armhf 4.7-1 [181 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf init-system-helpers all 1.56+nmu1 [38.2 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf libnettle6 armhf 3.4.1-1 [123 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libhogweed4 armhf 3.4.1-1 [129 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf libgnutls30 armhf 3.6.5-2ubuntu1 [700 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libubsan1 armhf 8.2.0-16ubuntu1 [109 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gcc-8-base armhf 8.2.0-16ubuntu1 [18.8 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgcc1 armhf 1:8.2.0-16ubuntu1 [37.1 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgomp1 armhf 8.2.0-16ubuntu1 [66.6 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libatomic1 armhf 8.2.0-16ubuntu1 [7060 B] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libasan5 armhf 8.2.0-16ubuntu1 [349 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main armhf cpp-8 armhf 8.2.0-16ubuntu1 [6835 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libcc1-0 armhf 8.2.0-16ubuntu1 [40.2 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main armhf g++-8 armhf 8.2.0-16ubuntu1 [7815 kB] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gcc-8 armhf 8.2.0-16ubuntu1 [7599 kB] Get:35 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgcc-8-dev armhf 8.2.0-16ubuntu1 [634 kB] Get:36 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libstdc++-8-dev armhf 8.2.0-16ubuntu1 [1599 kB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libstdc++6 armhf 8.2.0-16ubuntu1 [349 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf libmpfr6 armhf 4.0.2-1 [196 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf zlib1g armhf 1:1.2.11.dfsg-1ubuntu2 [48.3 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.31.1-11ubuntu1 [309 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.31.1-11ubuntu1 [194 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.31.1-11ubuntu1 [3348 B] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-11ubuntu1 [2150 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf liblz4-1 armhf 1.8.3-1ubuntu1 [66.6 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf liblzma5 armhf 5.2.4-1 [84.6 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libudev1 armhf 240-5ubuntu2 [63.2 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main armhf libzstd1 armhf 1.3.8+dfsg-3 [195 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf libapt-pkg5.0 armhf 1.8.0~beta1 [732 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-2 [7016 B] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-2 [72.7 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf passwd armhf 1:4.5-1.1ubuntu1 [769 kB] Get:52 http://ftpmaster.internal/ubuntu disco-proposed/main armhf adduser all 3.118ubuntu1 [163 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main armhf libgpg-error0 armhf 1.33-3 [49.3 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpgv armhf 2.2.12-1ubuntu3 [167 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main armhf apt armhf 1.8.0~beta1 [1118 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd-sysv armhf 240-5ubuntu2 [9388 B] Get:57 http://ftpmaster.internal/ubuntu disco/main armhf mount armhf 2.33.1-0.1ubuntu1 [105 kB] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main armhf systemd armhf 240-5ubuntu2 [3147 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsystemd0 armhf 240-5ubuntu2 [226 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main armhf libext2fs2 armhf 1.44.5-1 [145 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main armhf e2fsprogs armhf 1.44.5-1 [492 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main armhf init armhf 1.56+nmu1 [6080 B] Get:63 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-2 [9656 B] Get:64 http://ftpmaster.internal/ubuntu disco/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.3 [590 kB] Get:65 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdebconfclient0 armhf 0.246ubuntu1 [5844 B] Get:66 http://ftpmaster.internal/ubuntu disco/main armhf libcom-err2 armhf 1.44.5-1 [8468 B] Get:67 http://ftpmaster.internal/ubuntu disco/main armhf libss2 armhf 1.44.5-1 [9324 B] Get:68 http://ftpmaster.internal/ubuntu disco-proposed/main armhf lsb-base all 10.2018112800ubuntu1 [12.6 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main armhf ca-certificates all 20190110 [146 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main armhf libargon2-1 armhf 0~20171227-0.2 [20.0 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main armhf libjson-c3 armhf 0.12.1+ds-2 [20.2 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main armhf readline-common all 8.0-1 [53.4 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main armhf libreadline8 armhf 8.0-1 [108 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main armhf libsqlite3-0 armhf 3.26.0+fossilbc891ac6b-2 [450 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018i-1 [189 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main armhf xz-utils armhf 5.2.4-1 [80.6 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-2build1 [24.6 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main armhf libpng16-16 armhf 1.6.36-3 [162 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main armhf dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main armhf libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main armhf e2fslibs armhf 1.44.5-1 [2704 B] Get:82 http://ftpmaster.internal/ubuntu disco/main armhf libassuan0 armhf 2.5.2-1 [28.7 kB] Get:83 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpg armhf 2.2.12-1ubuntu3 [415 kB] Get:84 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpgconf armhf 2.2.12-1ubuntu3 [105 kB] Get:85 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpg-agent armhf 2.2.12-1ubuntu3 [190 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main armhf libcomerr2 armhf 1.44.5-1 [2700 B] Get:87 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-2build1 [5800 B] Get:88 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.19.0-12.13 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.3 MB in 3s (13.5 MB/s) (Reading database ... 12402 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16343580 armhf disco-proposed -c chroot:build-PACKAGEBUILD-16343580 --arch=armhf --dist=disco-proposed --nolog votca-csg_1.4.1-1build3.dsc Initiating build PACKAGEBUILD-16343580 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-016.buildd +==============================================================================+ | votca-csg 1.4.1-1build3 (armhf) 01 Feb 2019 23:20 | +==============================================================================+ Package: votca-csg Version: 1.4.1-1build3 Source Version: 1.4.1-1build3 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/votca-csg-qx0KXc/votca-csg-1.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/votca-csg-qx0KXc' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16343580/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- votca-csg_1.4.1-1build3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-30a2dH/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-30a2dH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-30a2dH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-30a2dH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-30a2dH/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-30a2dH/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (34.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-30a2dH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (74.6 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12435 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: bash-completion, cmake, debhelper (>= 9.0.0), dh-python, libboost-filesystem-dev, libboost-program-options-dev, libboost-system-dev, libgromacs-dev, libgsl-dev, libsqlite3-dev, libvotca-tools-dev (>= 1.4.1), libvotca-tools-dev (<= 1.5~), pkg-config, python, txt2tags Filtered Build-Depends: bash-completion, cmake, debhelper (>= 9.0.0), dh-python, libboost-filesystem-dev, libboost-program-options-dev, libboost-system-dev, libgromacs-dev, libgsl-dev, libsqlite3-dev, libvotca-tools-dev (>= 1.4.1), libvotca-tools-dev (<= 1.5~), pkg-config, python, txt2tags dpkg-deb: building package 'sbuild-build-depends-votca-csg-dummy' in '/<>/resolver-l3WejF/apt_archive/sbuild-build-depends-votca-csg-dummy.deb'. Ign:1 copy:/<>/resolver-l3WejF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-l3WejF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-l3WejF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-l3WejF/apt_archive ./ Sources [324 B] Get:5 copy:/<>/resolver-l3WejF/apt_archive ./ Packages [644 B] Fetched 3087 B in 0s (23.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install votca-csg build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas3 libboost-filesystem-dev libboost-filesystem1.67-dev libboost-filesystem1.67.0 libboost-program-options-dev libboost-program-options1.67-dev libboost-program-options1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost1.67-dev libbsd0 libcroco3 libcurl4 libelf1 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgromacs-dev libgromacs4 libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc5 libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-dev libssh-4 libtool libuchardet0 libuv1 libvotca-tools-dev libvotca-tools4 libwind0-heimdal libxml2 m4 man-db mime-support pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal txt2tags Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libfftw3-doc gromacs-mpich | gromacs-openmpi libmpich-dev libx11-dev zlib1g-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libhwloc-contrib-plugins sqlite3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs gromacs-data libhwloc-plugins krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas3 libboost-filesystem-dev libboost-filesystem1.67-dev libboost-filesystem1.67.0 libboost-program-options-dev libboost-program-options1.67-dev libboost-program-options1.67.0 libboost-system-dev libboost-system1.67-dev libboost-system1.67.0 libboost1.67-dev libbsd0 libcroco3 libcurl4 libelf1 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgromacs-dev libgromacs4 libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc5 libhx509-5-heimdal libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libltdl7 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-dev libssh-4 libtool libuchardet0 libuv1 libvotca-tools-dev libvotca-tools4 libwind0-heimdal libxml2 m4 man-db mime-support pkg-config po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal sbuild-build-depends-votca-csg-dummy txt2tags 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[29.7 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:113 http://ftpmaster.internal/ubuntu disco/universe armhf txt2tags all 2.6-4.1 [409 kB] Get:114 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf libgromacs-dev armhf 2019-1 [213 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.3 MB in 6s (8906 kB/s) Selecting previously unselected package libpython3.7-minimal:armhf. 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Setting up bash-completion (1:2.8-1ubuntu1) ... Setting up libelf1:armhf (0.175-2) ... Setting up libglib2.0-0:armhf (2.58.2-4) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1build1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1build1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up cmake-data (3.13.2-1) ... Setting up libpipeline1:armhf (1.5.1-1) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libfftw3-double3:armhf (3.3.8-2) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libboost-program-options1.67.0:armhf (1.67.0-12) ... Setting up libkrb5support0:armhf (1.17-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:armhf (1:5.35-2) ... Setting up librhash0:armhf (1.3.7-1) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libblas3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:armhf (1.67.0-12) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libltdl7:armhf (2.4.6-9) ... Setting up libfftw3-single3:armhf (3.3.8-2) ... Setting up libkeyutils1:armhf (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgslcblas0:armhf (2.5+dfsg-6) ... Setting up libboost-system1.67.0:armhf (1.67.0-12) ... Setting up libgfortran5:armhf (8.2.0-16ubuntu1) ... Setting up libpython2.7-stdlib:armhf (2.7.15-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libk5crypto3:armhf (1.17-1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libpython3.7-stdlib:armhf (3.7.2-1build1) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libgsl23:armhf (2.5+dfsg-6) ... Setting up gettext (0.19.8.1-9) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libarchive13:armhf (3.3.3-3) ... Setting up libboost-filesystem1.67.0:armhf (1.67.0-12) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up groff-base (1.22.4-2) ... Setting up liblapack3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up python2.7 (2.7.15-6) ... Setting up python3.7 (3.7.2-1build1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.35-2) ... Setting up libhwloc5:armhf (1.11.12-1) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-program-options1.67-dev:armhf (1.67.0-12) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libboost-system1.67-dev:armhf (1.67.0-12) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:armhf (2.7.15-4) ... Setting up libkrb5-3:armhf (1.17-1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up libboost-program-options-dev:armhf (1.67.0.1) ... Setting up libtool (2.4.6-9) ... Setting up libpython3-stdlib:armhf (3.7.2-1) ... Setting up libboost-filesystem1.67-dev:armhf (1.67.0-12) ... Setting up libgromacs4:armhf (2019-1) ... Setting up libvotca-tools4 (1.4.1-2build1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.2-1) ... Setting up libboost-system-dev:armhf (1.67.0.1) ... Setting up libvotca-tools-dev (1.4.1-2build1) ... Setting up libgromacs-dev (2019-1) ... Setting up libboost-filesystem-dev:armhf (1.67.0.1) ... Setting up python2 (2.7.15-4) ... Setting up libgssapi-krb5-2:armhf (1.17-1) ... Setting up libpython-stdlib:armhf (2.7.15-4) ... Setting up libssh-4:armhf (0.8.6-2) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-2.1) ... Setting up python3-lib2to3 (3.7.2-3) ... Setting up python3-distutils (3.7.2-3) ... Setting up python (2.7.15-4) ... Setting up txt2tags (2.6-4.1) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-2ubuntu1) ... Setting up dh-python (3.20180927ubuntu2) ... Setting up libcurl4:armhf (7.63.0-1ubuntu1) ... Setting up cmake (3.13.2-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-votca-csg-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-16ubuntu1 gcc-8_8.2.0-16ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-16ubuntu1 libstdc++6_8.2.0-16ubuntu1 linux-libc-dev_4.19.0-12.13 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-1 apt_1.8.0~beta1 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_5.0-2ubuntu1 bash-completion_1:2.8-1ubuntu1 binutils_2.31.1-11ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20190110 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libhx509-5-heimdal_7.5.0+dfsg-2.1 libicu63_63.1-6 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libjson-c3_0.12.1+ds-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.17-1 libkrb5support0_1.17-1 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-2ubuntu1 libldap-common_2.4.47+dfsg-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl7_2.4.6-9 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1-1 libnghttp2-14_1.36.0-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.1-1 libpng16-16_1.6.36-3 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libpython-stdlib_2.7.15-4 libpython2-stdlib_2.7.15-4 libpython2.7-minimal_2.7.15-6 libpython2.7-stdlib_2.7.15-6 libpython3-stdlib_3.7.2-1 libpython3.7-minimal_3.7.2-1build1 libpython3.7-stdlib_3.7.2-1build1 libreadline7_7.0-5 libreadline8_8.0-1 librhash0_1.3.7-1 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1build1 libsasl2-modules-db_2.1.27+dfsg-1build1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.33.1-0.1ubuntu1 libsqlite3-0_3.26.0+fossilbc891ac6b-2 libsqlite3-dev_3.26.0+fossilbc891ac6b-2 libss2_1.44.5-1 libssh-4_0.8.6-2 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-16ubuntu1 libstdc++6_8.2.0-16ubuntu1 libsystemd0_240-5ubuntu2 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-9 libubsan1_8.2.0-16ubuntu1 libuchardet0_0.0.6-3 libudev1_240-5ubuntu2 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.33.1-0.1ubuntu1 libuv1_1.24.1-1 libvotca-tools-dev_1.4.1-2build1 libvotca-tools4_1.4.1-2build1 libwind0-heimdal_7.5.0+dfsg-2.1 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-12.13 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu1 lsb-base_10.2018112800ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.33.1-0.1ubuntu1 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1.1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-4 python-minimal_2.7.15-4 python2_2.7.15-4 python2-minimal_2.7.15-4 python2.7_2.7.15-6 python2.7-minimal_2.7.15-6 python3_3.7.2-1 python3-distutils_3.7.2-3 python3-lib2to3_3.7.2-3 python3-minimal_3.7.2-1 python3.7_3.7.2-1build1 python3.7-minimal_3.7.2-1build1 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-votca-csg-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-5ubuntu2 systemd-sysv_240-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 txt2tags_2.6-4.1 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.33.1-0.1ubuntu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Feb 1 23:16:22 2019 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./votca-csg_1.4.1-1build3.dsc dpkg-source: info: extracting votca-csg in votca-csg-1.4.1 dpkg-source: info: unpacking votca-csg_1.4.1.orig.tar.gz dpkg-source: info: unpacking votca-csg_1.4.1.orig-tutorials.tar.gz dpkg-source: info: unpacking votca-csg_1.4.1-1build3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying solvematlab-syntax.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16343580 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16343580 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16343580 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package votca-csg dpkg-buildpackage: info: source version 1.4.1-1build3 dpkg-buildpackage: info: source distribution disco dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with bash-completion,python2 dh_clean debian/rules build-arch dh build-arch --with bash-completion,python2 dh_update_autotools_config -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DLIB=lib/arm-linux-gnueabihf cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DLIB=lib/arm-linux-gnueabihf .. -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found TXT2TAGS: /usr/bin/txt2tags -- Found UnixCommands: /bin/bash -- Boost version: 1.67.0 -- Found the following Boost libraries: -- program_options -- filesystem -- system -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'libvotca_tools' -- Found libvotca_tools, version 1.4.1 -- Checking for module 'sqlite3' -- Found sqlite3, version 3.26.0 -- Found SQLITE3: /usr/lib/arm-linux-gnueabihf/libsqlite3.so -- Found VOTCA_TOOLS: /usr/lib/arm-linux-gnueabihf/libvotca_tools.so -- Looking for VotcaToolsFromC in /usr/lib/arm-linux-gnueabihf/libvotca_tools.so -- Looking for VotcaToolsFromC in /usr/lib/arm-linux-gnueabihf/libvotca_tools.so - found -- Checking for module 'libgromacs_d' -- Found libgromacs_d, version 2019 -- Checking for module 'libgromacs' -- Found libgromacs, version 2019 -- Looking for GromacsVersion in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for GromacsVersion in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - not found -- Looking for c++ gmx_version in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for c++ gmx_version in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - found -- Looking for init_domdec_vsites in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for init_domdec_vsites in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - not found -- Looking for gmx_gpu_sharing_supported in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for gmx_gpu_sharing_supported in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - not found -- Looking for c++ gmx_is_single_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for c++ gmx_is_single_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - not found -- Looking for c++ gmx_is_double_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for c++ gmx_is_double_precision in /usr/lib/arm-linux-gnueabihf/libgromacs_d.so - found -- Found GROMACS: /usr/lib/arm-linux-gnueabihf/libgromacs_d.so -- Looking for assert.h -- Looking for assert.h - found -- Looking for C++ include algorithm -- Looking for C++ include algorithm - found -- Looking for C++ include fstream -- Looking for C++ include fstream - found -- Looking for C++ include iomanip -- Looking for C++ include iomanip - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Looking for C++ include list -- Looking for C++ include list - found -- Looking for C++ include map -- Looking for C++ include map - found -- Looking for C++ include numeric -- Looking for C++ include numeric - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Looking for C++ include cstdlib -- Looking for C++ include cstdlib - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- The following OPTIONAL packages have been found: * TXT2TAGS * UnixCommands * PkgConfig -- The following REQUIRED packages have been found: * Threads * Boost (required version >= 1.39.0) * SQLITE3 * VOTCA_TOOLS * GROMACS -- The following OPTIONAL packages have not been found: * Doxygen -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/man /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/share/man /<>/obj-arm-linux-gnueabihf/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake --color= Scanning dependencies of target votca-csg_manpage make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Building votca-csg manpage cd /<>/obj-arm-linux-gnueabihf/share/man && /usr/bin/txt2tags -q -t man -i /<>/share/man/votca-csg.t2t -o /<>/obj-arm-linux-gnueabihf/share/man/votca-csg.man make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Built target votca-csg_manpage make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake --color= Scanning dependencies of target help2t2t_build make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Generating help2t2t, ALL cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="help2t2t.out" -DOUTPUT="help2t2t" -DGIT_EXECUTABLE="" -DMERCURIAL_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 2%] Built target help2t2t_build make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake --color= Scanning dependencies of target csg_call_manpage make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 3%] Generating csg_call cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_call.out" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DMERCURIAL_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake [ 4%] Generating csg_call.man cd /<>/obj-arm-linux-gnueabihf/scripts && VOTCASHARE=/<>/share /bin/bash /<>/obj-arm-linux-gnueabihf/scripts/csg_call --help > csg_call.help cd /<>/obj-arm-linux-gnueabihf/scripts && /bin/bash /<>/obj-arm-linux-gnueabihf/scripts/help2t2t csg_call.help > csg_call.t2t cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_call.t2t -o csg_call.man make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 4%] Built target csg_call_manpage make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/scripts /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/scripts /<>/obj-arm-linux-gnueabihf/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake --color= Scanning dependencies of target csg_inverse_manpage make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 5%] Generating csg_inverse cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/cmake -DINPUT="csg_inverse.out" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DMERCURIAL_EXECUTABLE="" -DTOP_SOURCE_DIR="/<>" -P /<>/CMakeModules/gitscript.cmake [ 6%] Generating csg_inverse.man cd /<>/obj-arm-linux-gnueabihf/scripts && VOTCASHARE=/<>/share /bin/bash /<>/obj-arm-linux-gnueabihf/scripts/csg_inverse --help > csg_inverse.help cd /<>/obj-arm-linux-gnueabihf/scripts && /bin/bash /<>/obj-arm-linux-gnueabihf/scripts/help2t2t csg_inverse.help > csg_inverse.t2t cd /<>/obj-arm-linux-gnueabihf/scripts && /usr/bin/txt2tags -q -t man -i csg_inverse.t2t -o csg_inverse.man make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 6%] Built target csg_inverse_manpage make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/libcsg /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src/libcsg /<>/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake --color= Scanning dependencies of target gitversion-csg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/<>" -DGIT_EXECUTABLE="" -DMERCURIAL_EXECUTABLE="" -P /<>/CMakeModules/gitversion.cmake make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 6%] Built target gitversion-csg make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/libcsg /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src/libcsg /<>/obj-arm-linux-gnueabihf/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake --color= Scanning dependencies of target votca_csg make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 7%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/beadlist.cc.o -c /<>/src/libcsg/beadlist.cc [ 8%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/boundarycondition.cc.o -c /<>/src/libcsg/boundarycondition.cc [ 9%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/cgengine.cc.o -c /<>/src/libcsg/cgengine.cc [ 10%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /<>/src/libcsg/cgmoleculedef.cc [ 11%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /<>/src/libcsg/csgapplication.cc [ 13%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /<>/src/libcsg/exclusionlist.cc [ 14%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/imcio.cc.o -c /<>/src/libcsg/imcio.cc [ 15%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/map.cc.o -c /<>/src/libcsg/map.cc In file included from /usr/include/c++/8/vector:69, from /<>/include/votca/csg/map.h:22, from /<>/src/libcsg/map.cc:18: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const votca::csg::Map_Sphere::element_t&}; _Tp = votca::csg::Map_Sphere::element_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /<>/include/votca/csg/map.h:22, from /<>/src/libcsg/map.cc:18: /usr/include/c++/8/bits/stl_vector.h: In member function ‘virtual void votca::csg::Map_Sphere::Initialize(votca::csg::Molecule*, votca::csg::Bead*, votca::tools::Property*, votca::tools::Property*)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 16%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /<>/src/libcsg/molecule.cc [ 17%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/nblist.cc.o -c /<>/src/libcsg/nblist.cc [ 18%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /<>/src/libcsg/nblistgrid.cc [ 19%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/nematicorder.cc.o -c /<>/src/libcsg/nematicorder.cc [ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/openbox.cc.o -c /<>/src/libcsg/openbox.cc [ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /<>/src/libcsg/orthorhombicbox.cc [ 22%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -c /<>/src/libcsg/potentialfunctions/potentialfunction.cc [ 23%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o -c /<>/src/libcsg/potentialfunctions/potentialfunctioncbspl.cc [ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -c /<>/src/libcsg/potentialfunctions/potentialfunctionlj126.cc [ 26%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -c /<>/src/libcsg/potentialfunctions/potentialfunctionljg.cc [ 27%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/topology.cc.o -c /<>/src/libcsg/topology.cc [ 28%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/topologymap.cc.o -c /<>/src/libcsg/topologymap.cc [ 29%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/topologyreader.cc.o -c /<>/src/libcsg/topologyreader.cc [ 30%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -c /<>/src/libcsg/trajectoryreader.cc [ 31%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/trajectorywriter.cc.o -c /<>/src/libcsg/trajectorywriter.cc [ 32%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/triclinicbox.cc.o -c /<>/src/libcsg/triclinicbox.cc [ 33%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/version.cc.o -c /<>/src/libcsg/version.cc /<>/src/libcsg/version.cc:58:96: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] static const std::string version_str = std::string(VERSION) + " " + gitversion + " (compiled " __DATE__ ", " __TIME__ ")"; ^~~~~~~~ /<>/src/libcsg/version.cc:58:110: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] static const std::string version_str = std::string(VERSION) + " " + gitversion + " (compiled " __DATE__ ", " __TIME__ ")"; ^~~~~~~~ [ 34%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o cd /<>/obj-arm-linux-gnueabihf/src/libcsg && /usr/bin/c++ -DGMX_DOUBLE=1 -Dvotca_csg_EXPORTS -I/<>/include -I/<>/obj-arm-linux-gnueabihf/src/libcsg -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o -c /<>/src/libcsg/modules/io/gmxtopologyreader.cc /<>/src/libcsg/modules/io/gmxtopologyreader.cc: In member function ‘virtual bool votca::csg::GMXTopologyReader::ReadTopology(std::__cxx11::string, votca::csg::Topology&)’: /<>/src/libcsg/modules/io/gmxtopologyreader.cc:62:35: error: ‘struct gmx_mtop_t’ has no member named ‘nmolblock’; did you mean ‘molblock’? for(int iblock=0; iblock>/src/libcsg/modules/io/gmxtopologyreader.cc:65:22: error: ‘struct gmx_mtop_t’ has no member named ‘mols’ if(count != mtop.mols.nr ) { ^~~~ /<>/src/libcsg/modules/io/gmxtopologyreader.cc:73:35: error: ‘struct gmx_mtop_t’ has no member named ‘nmolblock’; did you mean ‘molblock’? for(int iblock=0; iblock>/src/libcsg/modules/io/gmxtopologyreader.cc:91:58: error: ‘__gnu_cxx::__alloc_traits, gmx_molblock_t>::value_type’ {aka ‘struct gmx_molblock_t’} has no member named ‘natoms_mol’ for(int iatom=0; iatom>/src/libcsg/modules/io/gmxtopologyreader.cc:103:58: error: ‘__gnu_cxx::__alloc_traits, gmx_molblock_t>::value_type’ {aka ‘struct gmx_molblock_t’} has no member named ‘natoms_mol’ for(int iatom=0; iatom>/src/libcsg/modules/io/gmxtopologyreader.cc:113:47: error: ‘__gnu_cxx::__alloc_traits, gmx_molblock_t>::value_type’ {aka ‘struct gmx_molblock_t’} has no member named ‘natoms_mol’ ifirstatom+=mtop.molblock[iblock].natoms_mol; ^~~~~~~~~~ make[3]: *** [src/libcsg/CMakeFiles/votca_csg.dir/build.make:391: src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o] Error 1 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[2]: *** [CMakeFiles/Makefile2:427: src/libcsg/CMakeFiles/votca_csg.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[1]: *** [Makefile:133: all] Error 2 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_build: cd obj-arm-linux-gnueabihf && make -j1 returned exit code 2 make: *** [debian/rules:29: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20190201-2328 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 48588 Build-Time: 349 Distribution: disco-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 138 Job: votca-csg_1.4.1-1build3.dsc Machine Architecture: arm64 Package: votca-csg Package-Time: 493 Source-Version: 1.4.1-1build3 Space: 48588 Status: attempted Version: 1.4.1-1build3 -------------------------------------------------------------------------------- Finished at 20190201-2328 Build needed 00:08:13, 48588k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16343580 Scanning for processes to kill in build PACKAGEBUILD-16343580