RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '976886-2170953', '/home/buildd/filecache-default/e5b83ecc7e319182568af474a670df2b3791a43d'] Synching the system clock with the buildd NTP service... 5 May 22:06:27 ntpdate[19548]: adjust time server 10.211.37.1 offset 0.002855 sec Unpacking chroot for build 976886-2170953 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '976886-2170953'] Mounting chroot for build 976886-2170953 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '976886-2170953', 'multiverse'] Attempting OGRE for multiverse in build-976886-2170953 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '976886-2170953', 'deb http://ftpmaster.internal/ubuntu karmic main restricted universe multiverse'] Overriding sources.list in build-976886-2170953 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '976886-2170953'] Updating debian chroot for build 976886-2170953 Get:1 http://ftpmaster.internal karmic Release.gpg [189B] Get:2 http://ftpmaster.internal karmic Release [74.6kB] Get:3 http://ftpmaster.internal karmic/main Packages [1258kB] Get:4 http://ftpmaster.internal karmic/restricted Packages [8883B] Get:5 http://ftpmaster.internal karmic/universe Packages [4879kB] Get:6 http://ftpmaster.internal karmic/multiverse Packages [198kB] Fetched 6418kB in 7s (856kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bsdutils coreutils cpio cpp-4.4 findutils g++-4.4 gcc-4.4 gcc-4.4-base libblkid1 libc6 libc6-dev libgcc1 libgomp1 libncurses5 libselinux1 libsepol1 libstdc++6 libstdc++6-4.4-dev libvolume-id1 linux-libc-dev mount ncurses-base ncurses-bin util-linux 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/27.7MB of archives. After this operation, 545kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! coreutils findutils linux-libc-dev libc6-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 libc6 libblkid1 mount ncurses-bin util-linux bsdutils libncurses5 ncurses-base libselinux1 libsepol1 libvolume-id1 cpio Preconfiguring packages ... Authentication warning overridden. (Reading database ... 9293 files and directories currently installed.) Preparing to replace coreutils 7.2-1 (using .../coreutils_7.3-1_i386.deb) ... Unpacking replacement coreutils ... Setting up coreutils (7.3-1) ... (Reading database ... 9293 files and directories currently installed.) Preparing to replace findutils 4.4.0-2ubuntu4 (using .../findutils_4.4.1-1ubuntu1_i386.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.1-1ubuntu1) ... (Reading database ... 9293 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.30-1.2 (using .../linux-libc-dev_2.6.30-2.3_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libc6-dev 2.9-4ubuntu6 (using .../libc6-dev_2.9-9ubuntu1_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libgomp1 4.4.0-0ubuntu5 (using .../libgomp1_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.0-0ubuntu5 (using .../cpp-4.4_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.0-0ubuntu5 (using .../gcc-4.4-base_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.0-3ubuntu1) ... (Reading database ... 9293 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.0-0ubuntu5 (using .../libgcc1_1%3a4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.0-3ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.0-0ubuntu5 (using .../gcc-4.4_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.0-0ubuntu5 (using .../g++-4.4_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.0-0ubuntu5 (using .../libstdc++6-4.4-dev_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.0-0ubuntu5 (using .../libstdc++6_4.4.0-3ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.0-3ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9294 files and directories currently installed.) Preparing to replace libc6 2.9-4ubuntu6 (using .../libc6_2.9-9ubuntu1_i386.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.9-9ubuntu1) ... Installing new version of config file /etc/init.d/glibc.sh ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9294 files and directories currently installed.) Preparing to replace libblkid1 1.41.5-1ubuntu1 (using .../libblkid1_2.15~rc2-1ubuntu1_i386.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.15~rc2-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9297 files and directories currently installed.) Preparing to replace mount 2.14.2-1ubuntu4 (using .../mount_2.15~rc2-1ubuntu1_i386.deb) ... Unpacking replacement mount ... Setting up mount (2.15~rc2-1ubuntu1) ... (Reading database ... 9297 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20090207-1ubuntu1 (using .../ncurses-bin_5.7+20090411-1ubuntu1_i386.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7+20090411-1ubuntu1) ... (Reading database ... 9297 files and directories currently installed.) Preparing to replace util-linux 2.14.2-1ubuntu4 (using .../util-linux_2.15~rc2-1ubuntu1_i386.deb) ... Unpacking replacement util-linux ... Replacing files in old package e2fsprogs ... Setting up util-linux (2.15~rc2-1ubuntu1) ... (Reading database ... 9300 files and directories currently installed.) Preparing to replace bsdutils 1:2.14.2-1ubuntu4 (using .../bsdutils_1%3a2.15~rc2-1ubuntu1_i386.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.15~rc2-1ubuntu1) ... (Reading database ... 9300 files and directories currently installed.) Preparing to replace libncurses5 5.7+20090207-1ubuntu1 (using .../libncurses5_5.7+20090411-1ubuntu1_i386.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7+20090411-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9300 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20090207-1ubuntu1 (using .../ncurses-base_5.7+20090411-1ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7+20090411-1ubuntu1) ... (Reading database ... 9300 files and directories currently installed.) Preparing to replace libselinux1 2.0.65-5build1 (using .../libselinux1_2.0.71-1_i386.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.0.71-1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9300 files and directories currently installed.) Preparing to replace libsepol1 2.0.30-2ubuntu1 (using .../libsepol1_2.0.32-1ubuntu1_i386.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.32-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9300 files and directories currently installed.) Preparing to replace libvolume-id1 141-1 (using .../libvolume-id1_141-1.1_i386.deb) ... Unpacking replacement libvolume-id1 ... Setting up libvolume-id1 (141-1.1) ... (Reading database ... 9300 files and directories currently installed.) Preparing to replace cpio 2.9-15ubuntu1 (using .../cpio_2.9.90-3ubuntu1_i386.deb) ... Unpacking replacement cpio ... Setting up linux-libc-dev (2.6.30-2.3) ... Setting up libc6-dev (2.9-9ubuntu1) ... Setting up libgomp1 (4.4.0-3ubuntu1) ... Setting up cpp-4.4 (4.4.0-3ubuntu1) ... Setting up gcc-4.4 (4.4.0-3ubuntu1) ... Setting up cpio (2.9.90-3ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.0-3ubuntu1) ... Setting up g++-4.4 (4.4.0-3ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '976886-2170953', '--nolog', '--batch', '--archive=ubuntu', '-A', '--purpose=PRIMARY', '--dist=karmic', '--comp=multiverse', 'weka_3.6.0-1.dsc'] Initiating build Automatic build of weka_3.6.0-1 on vernadsky by sbuild/i386 1.170.5 Build started at 20090505-2207 ****************************************************************************** weka_3.6.0-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 5), openjdk-6-jdk, ant, texlive-latex-base, texlive-latex-extra, ghostscript, quilt, jflex, cup (>= 0.11a+20060608) Checking for already installed source dependencies... cdbs: missing debhelper: missing openjdk-6-jdk: missing ant: missing texlive-latex-base: missing texlive-latex-extra: missing ghostscript: missing quilt: missing jflex: missing cup: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper openjdk-6-jdk ant texlive-latex-base texlive-latex-extra ghostscript quilt jflex cup Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates ca-certificates-java defoma diffstat ed fdupes file fontconfig-config gettext gettext-base groff-base gsfonts html2text intltool intltool-debian java-common libaccess-bridge-java libasound2 libcap2 libcroco3 libcups2 libcupsimage2 libexpat1 libfontconfig1 libfreetype6 libgcrypt11 libgif4 libglib2.0-0 libgnutls26 libgpg-error0 libgs8 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libjaxp1.3-java libjpeg62 libkeyutils1 libkpathsea4 libkrb53 liblcms1 libmagic1 libnewt0.52 libpaper1 libpng12-0 libpoppler4 libpopt0 libpulse0 libsm6 libssl0.9.8 libtasn1-3 libtiff4 liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxerces2-java libxext6 libxi6 libxml-parser-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxtst6 m4 man-db mime-support netbase openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl po-debconf preview-latex-style rhino tex-common texlive-base texlive-base-bin texlive-common texlive-doc-base texlive-pictures ttf-dejavu ttf-dejavu-core ttf-dejavu-extra tzdata-java ucf whiptail x11-common Suggested packages: ant-doc autoconf2.13 autobook autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make defoma-doc psfontmgr x-ttcidfont-conf dfontmgr libft-perl cvs gettext-doc ghostscript-x hpijs groff equivs libasound2-plugins cups-common rng-tools gnutls-bin libdata-dump-perl krb5-doc krb5-user liblcms-utils pulseaudio libcrypt-ssleay-perl libio-socket-ssl-perl libxerces2-java-doc less www-browser openjdk-6-demo openjdk-6-source visualvm icedtea6-plugin libnss-mdns sun-java6-fonts openssl-doc libmail-box-perl procmail graphviz rhino-doc perl-tk xpdf-reader pdf-viewer gv postscript-viewer texpower Recommended packages: ant-optional ant-gcj default-jdk java-compiler java-sdk curl wget lynx libglib2.0-data shared-mime-info libjaxp1.3-java-gcj libfribidi0 libpaper-utils libmailtools-perl libhtml-format-perl libcompress-zlib-perl libxerces2-java-gcj xml-core ifupdown libxt-dev ttf-baekmuk ttf-unfonts ttf-unfonts-core ttf-kochi-gothic ttf-sazanami-gothic ttf-kochi-mincho ttf-sazanami-mincho ttf-wqy-zenhei ttf-indic-fonts-core ttf-telugu-fonts ttf-oriya-fonts ttf-kannada-fonts ttf-bengali-fonts icedtea-6-jre-cacao libmail-sendmail-perl dvipdfmx lmodern texlive-base-bin-doc texlive-latex-base-doc texlive-humanities texlive-generic-extra texlive-latex-extra-doc texlive-latex-recommended texlive-pictures-doc pgf The following NEW packages will be installed: ant autoconf automake autotools-dev bsdmainutils ca-certificates ca-certificates-java cdbs cup debhelper defoma diffstat ed fdupes file fontconfig-config gettext gettext-base ghostscript groff-base gsfonts html2text intltool intltool-debian java-common jflex libaccess-bridge-java libasound2 libcap2 libcroco3 libcups2 libcupsimage2 libexpat1 libfontconfig1 libfreetype6 libgcrypt11 libgif4 libglib2.0-0 libgnutls26 libgpg-error0 libgs8 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libjaxp1.3-java libjpeg62 libkeyutils1 libkpathsea4 libkrb53 liblcms1 libmagic1 libnewt0.52 libpaper1 libpng12-0 libpoppler4 libpopt0 libpulse0 libsm6 libssl0.9.8 libtasn1-3 libtiff4 liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxaw7 libxcb1 libxdmcp6 libxerces2-java libxext6 libxi6 libxml-parser-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxtst6 m4 man-db mime-support netbase openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl po-debconf preview-latex-style quilt rhino tex-common texlive-base texlive-base-bin texlive-common texlive-doc-base texlive-latex-base texlive-latex-extra texlive-pictures ttf-dejavu ttf-dejavu-core ttf-dejavu-extra tzdata-java ucf whiptail x11-common 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 5161kB/94.7MB of archives. After this operation, 279MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libice6 libsm6 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxt6 openjdk-6-jre-lib libssl0.9.8 openssl ca-certificates ca-certificates-java tzdata-java rhino libaccess-bridge-java java-common libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1 libkrb53 libcups2 liblcms1 libjpeg62 libfreetype6 openjdk-6-jre-headless libasound2 libgif4 libpng12-0 libcap2 libpulse0 libxext6 libxi6 libxrender1 libxtst6 openjdk-6-jre openjdk-6-jdk libmagic1 file libnewt0.52 libpopt0 mime-support netbase whiptail bsdmainutils ed gettext-base groff-base libexpat1 libhtml-tagset-perl liburi-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db ucf libjaxp1.3-java libxerces2-java ant m4 autoconf autotools-dev automake html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs cup defoma diffstat ttf-dejavu-core ttf-dejavu-extra ttf-dejavu fontconfig-config libtiff4 libcupsimage2 libfontconfig1 libpaper1 libgs8 gsfonts ghostscript jflex libkpathsea4 libpoppler4 libxmu6 libxpm4 libxaw7 tex-common texlive-common texlive-base-bin preview-latex-style quilt texlive-doc-base texlive-base texlive-latex-base texlive-pictures texlive-latex-extra Authentication warning overridden. Get:1 http://ftpmaster.internal karmic/main cup 0.11a+20060608-1build2 [121kB] Get:2 http://ftpmaster.internal karmic/main jflex 1.4.2-2 [1060kB] Get:3 http://ftpmaster.internal karmic/main texlive-pictures 2007.dfsg.2-4 [569kB] Get:4 http://ftpmaster.internal karmic/main texlive-latex-extra 2007.dfsg.17-2ubuntu1 [3412kB] debconf: unable to initialize frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: unable to re-open stdin: Fetched 5161kB in 0s (13.6MB/s) Selecting previously deselected package x11-common. (Reading database ... 9300 files and directories currently installed.) Unpacking x11-common (from .../x11-common_1%3a7.4~5ubuntu19_all.deb) ... Selecting previously deselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.5-1_i386.deb) ... Selecting previously deselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.1.0-2_i386.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.4-2_i386.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.2-3_i386.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.2-1ubuntu1_i386.deb) ... Selecting previously deselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.1.99.2-1ubuntu2_all.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.1.99.2-1ubuntu2_i386.deb) ... Setting up x11-common (1:7.4~5ubuntu19) ... Selecting previously deselected package libxt6. (Reading database ... 9657 files and directories currently installed.) Unpacking libxt6 (from .../libxt6_1%3a1.0.5-3ubuntu1_i386.deb) ... Selecting previously deselected package openjdk-6-jre-lib. Unpacking openjdk-6-jre-lib (from .../openjdk-6-jre-lib_6b16~pre1-0ubuntu1_all.deb) ... 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Unpacking java-common (from .../java-common_0.30ubuntu5_all.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.4-2ubuntu7_i386.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.4.1-2ubuntu1_i386.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_1.8-1_i386.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.6.6-1_i386.deb) ... Selecting previously deselected package libkeyutils1. Unpacking libkeyutils1 (from .../libkeyutils1_1.2-10_i386.deb) ... Selecting previously deselected package libkrb53. Unpacking libkrb53 (from .../libkrb53_1.6.dfsg.4~beta1-5ubuntu2_i386.deb) ... Selecting previously deselected package libcups2. Unpacking libcups2 (from .../libcups2_1.3.9-17ubuntu1_i386.deb) ... Selecting previously deselected package liblcms1. 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Setting up ghostscript (8.64.dfsg.1-0ubuntu8) ... Updating font configuration of gs... Cleaning up category psprint.. Cleaning up category cmap.. Cleaning up category cid.. Cleaning up category truetype.. Cleaning up category gsfontderivative.. Cleaning up category type3.. Cleaning up category type1.. Updating category type1.. Updating category type3.. Updating category gsfontderivative.. Updating category truetype.. Updating category cid.. Updating category cmap.. Updating category psprint.. Setting up libkpathsea4 (2007.dfsg.2-6ubuntu1) ... Setting up libpoppler4 (0.10.6-1ubuntu1) ... Setting up libxmu6 (2:1.0.4-1) ... Setting up libxpm4 (1:3.5.7-1) ... Setting up libxaw7 (2:1.0.5-2) ... Setting up tex-common (1.18) ... Creating config file /etc/texmf/texmf.d/05TeXMF.cnf with new version Creating config file /etc/texmf/texmf.d/15Plain.cnf with new version Creating config file /etc/texmf/texmf.d/45TeXinputs.cnf with new version Creating config file /etc/texmf/texmf.d/55Fonts.cnf with new version Creating config file /etc/texmf/texmf.d/65BibTeX.cnf with new version Creating config file /etc/texmf/texmf.d/75DviPS.cnf with new version Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version Creating config file /etc/texmf/texmf.cnf with new version Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Building format(s) --all. This may take some time... done. Setting up texlive-common (2007.dfsg.2-4) ... Setting up texlive-base-bin (2007.dfsg.2-6ubuntu1) ... Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Setting up preview-latex-style (11.84-0ubuntu2) ... mktexlsr: Updating /usr/local/share/texmf/ls-R... mktexlsr: Updating /var/lib/texmf/ls-R-TEXMFMAIN... mktexlsr: Updating /var/lib/texmf/ls-R-TEXLIVE... mktexlsr: Updating /var/lib/texmf/ls-R... mktexlsr: Done. Setting up quilt (0.46-6) ... Setting up texlive-doc-base (2007.dfsg.2-2) ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2007.dfsg.2-4) ... Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Setting up texlive-latex-base (2007.dfsg.2-4) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Setting up texlive-pictures (2007.dfsg.2-4) ... Running mktexlsr. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Setting up texlive-latex-extra (2007.dfsg.17-2ubuntu1) ... Running mktexlsr. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Setting up openjdk-6-jre-lib (6b16~pre1-0ubuntu1) ... Setting up libaccess-bridge-java (1.24.0-0ubuntu2) ... Setting up openjdk-6-jre-headless (6b16~pre1-0ubuntu1) ... Setting up libjaxp1.3-java (1.3.04-3ubuntu2) ... Setting up libxerces2-java (2.9.1-2ubuntu2) ... Setting up ant (1.7.1-0ubuntu2) ... Setting up cup (0.11a+20060608-1build2) ... Setting up ca-certificates-java (20081028) ... creating /etc/ssl/certs/java/cacerts... Certificate was added to keystore added certificate cacert.org/cacert.org.crt Certificate was added to keystore added certificate gouv.fr/cert_igca_dsa.crt Certificate was added to keystore added certificate gouv.fr/cert_igca_rsa.crt done. Setting up openjdk-6-jre (6b16~pre1-0ubuntu1) ... Setting up rhino (1.7R1-2) ... Setting up openjdk-6-jdk (6b16~pre1-0ubuntu1) ... Setting up jflex (1.4.2-2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.9-9ubuntu1 make_3.81-5 dpkg-dev_1.14.24ubuntu2 g++-4.4_4.4.0-3ubuntu1 gcc-4.4_4.4.0-3ubuntu1 binutils_2.19.51.20090423-0ubuntu2 libstdc++6_4.4.0-3ubuntu1 libstdc++6-4.4-dev_4.4.0-3ubuntu1 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Thu Dec 25 22:55:19 2008 GMT using DSA key ID D1E2B16F gpg: Can't check signature: public key not found dpkg-source: extracting weka in weka-3.6.0 dpkg-source: unpacking weka_3.6.0.orig.tar.gz dpkg-source: applying /home/buildd/build-976886-2170953/weka_3.6.0-1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package weka dpkg-buildpackage: source version 3.6.0-1 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_clean cd . && /usr/lib/jvm/java-6-openjdk/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/java/cup.jar:/usr/share/java/JFlex.jar:/usr/lib/jvm/java-6-openjdk/lib/tools.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -buildfile build.xml clean Buildfile: build.xml init_all: clean: BUILD SUCCESSFUL Total time: 0 seconds rm -f debian/stamp-ant-build /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/weka-3.6.0' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/weka-3.6.0' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/buildd/weka-3.6.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/weka-3.6.0' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/weka-3.6.0' cd . && QUILT_PATCHES=/build/buildd/weka-3.6.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch jar.patch patching file build.xml Applying patch java_cup.patch patching file parsers.xml patching file src/main/java/weka/core/MathematicalExpression.java patching file src/main/java/weka/core/mathematicalexpression/Parser.cup patching file src/main/java/weka/core/mathematicalexpression/Parser.java patching file src/main/java/weka/core/mathematicalexpression/Scanner.java patching file src/main/java/weka/core/mathematicalexpression/Scanner.jflex patching file src/main/java/weka/filters/unsupervised/attribute/MathExpression.java patching file src/main/java/weka/filters/unsupervised/instance/subsetbyexpression/Parser.cup patching file src/main/java/weka/filters/unsupervised/instance/subsetbyexpression/Parser.java patching file src/main/java/weka/filters/unsupervised/instance/subsetbyexpression/Scanner.java patching file src/main/java/weka/filters/unsupervised/instance/subsetbyexpression/Scanner.jflex Now at patch java_cup.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/weka-3.6.0' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/weka-3.6.0' cd . && /usr/lib/jvm/java-6-openjdk/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/java/cup.jar:/usr/share/java/JFlex.jar:/usr/lib/jvm/java-6-openjdk/lib/tools.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -buildfile build.xml exejar docs Buildfile: build.xml init_all: init_compile: [mkdir] Created dir: /build/buildd/weka-3.6.0/build/classes compile: [javac] Compiling 1080 source files to /build/buildd/weka-3.6.0/build/classes [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:57: warning: unmappable character for encoding ASCII [javac] * F?lix Garc?a L?pez (2004). Solving feature subset selection problem by a Parallel Scatter Search. Elsevier. [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:57: warning: unmappable character for encoding ASCII [javac] * F?lix Garc?a L?pez (2004). Solving feature subset selection problem by a Parallel Scatter Search. Elsevier. [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:57: warning: unmappable character for encoding ASCII [javac] * F?lix Garc?a L?pez (2004). Solving feature subset selection problem by a Parallel Scatter Search. Elsevier. [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:87: warning: unmappable character for encoding ASCII [javac] * @book{L?pez2004, [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:88: warning: unmappable character for encoding ASCII [javac] * author = {F?lix Garc?a L?pez}, [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:88: warning: unmappable character for encoding ASCII [javac] * author = {F?lix Garc?a L?pez}, [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:88: warning: unmappable character for encoding ASCII [javac] * author = {F?lix Garc?a L?pez}, [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:99: warning: unmappable character for encoding ASCII [javac] * from the Book: Solving feature subset selection problem by a Parallel Scatter Search, F?lix Garc?a L?pez. [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:99: warning: unmappable character for encoding ASCII [javac] * from the Book: Solving feature subset selection problem by a Parallel Scatter Search, F?lix Garc?a L?pez. [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:99: warning: unmappable character for encoding ASCII [javac] * from the Book: Solving feature subset selection problem by a Parallel Scatter Search, F?lix Garc?a L?pez. [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:213: warning: unmappable character for encoding ASCII [javac] result.setValue(Field.AUTHOR, "F?lix Garc?a L?pez"); [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:213: warning: unmappable character for encoding ASCII [javac] result.setValue(Field.AUTHOR, "F?lix Garc?a L?pez"); [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:213: warning: unmappable character for encoding ASCII [javac] result.setValue(Field.AUTHOR, "F?lix Garc?a L?pez"); [javac] ^ [javac] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:925: warning: unmappable character for encoding ASCII [javac] // m?todos auxiliares generales [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 14 warnings [copy] Copying 422 files to /build/buildd/weka-3.6.0/build/classes [rmic] RMI Compiling 1 class to /build/buildd/weka-3.6.0/build/classes init_dist: [mkdir] Created dir: /build/buildd/weka-3.6.0/dist exejar: [jar] Building jar: /build/buildd/weka-3.6.0/dist/weka.jar init_all: docs: [javadoc] Generating Javadoc [javadoc] Javadoc execution [javadoc] Loading source files for package weka.associations... [javadoc] Loading source files for package weka.associations.gsp... [javadoc] Loading source files for package weka.associations.tertius... [javadoc] Loading source files for package weka.attributeSelection... [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:57: warning: unmappable character for encoding ASCII [javadoc] * F?lix Garc?a L?pez (2004). Solving feature subset selection problem by a Parallel Scatter Search. Elsevier. [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:57: warning: unmappable character for encoding ASCII [javadoc] * F?lix Garc?a L?pez (2004). Solving feature subset selection problem by a Parallel Scatter Search. Elsevier. [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:57: warning: unmappable character for encoding ASCII [javadoc] * F?lix Garc?a L?pez (2004). Solving feature subset selection problem by a Parallel Scatter Search. Elsevier. [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:87: warning: unmappable character for encoding ASCII [javadoc] * @book{L?pez2004, [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:88: warning: unmappable character for encoding ASCII [javadoc] * author = {F?lix Garc?a L?pez}, [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:88: warning: unmappable character for encoding ASCII [javadoc] * author = {F?lix Garc?a L?pez}, [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:88: warning: unmappable character for encoding ASCII [javadoc] * author = {F?lix Garc?a L?pez}, [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:99: warning: unmappable character for encoding ASCII [javadoc] * from the Book: Solving feature subset selection problem by a Parallel Scatter Search, F?lix Garc?a L?pez. [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:99: warning: unmappable character for encoding ASCII [javadoc] * from the Book: Solving feature subset selection problem by a Parallel Scatter Search, F?lix Garc?a L?pez. [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:99: warning: unmappable character for encoding ASCII [javadoc] * from the Book: Solving feature subset selection problem by a Parallel Scatter Search, F?lix Garc?a L?pez. [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:213: warning: unmappable character for encoding ASCII [javadoc] result.setValue(Field.AUTHOR, "F?lix Garc?a L?pez"); [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:213: warning: unmappable character for encoding ASCII [javadoc] result.setValue(Field.AUTHOR, "F?lix Garc?a L?pez"); [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:213: warning: unmappable character for encoding ASCII [javadoc] result.setValue(Field.AUTHOR, "F?lix Garc?a L?pez"); [javadoc] ^ [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:925: warning: unmappable character for encoding ASCII [javadoc] // m?todos auxiliares generales [javadoc] ^ [javadoc] Loading source files for package weka.classifiers... [javadoc] Loading source files for package weka.classifiers.bayes... [javadoc] Loading source files for package weka.classifiers.bayes.blr... [javadoc] Loading source files for package weka.classifiers.bayes.net... [javadoc] Loading source files for package weka.classifiers.bayes.net.estimate... [javadoc] Loading source files for package weka.classifiers.bayes.net.search... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.ci... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.fixed... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.global... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.local... [javadoc] Loading source files for package weka.classifiers.evaluation... [javadoc] Loading source files for package weka.classifiers.functions... [javadoc] Loading source files for package weka.classifiers.functions.neural... [javadoc] Loading source files for package weka.classifiers.functions.pace... [javadoc] Loading source files for package weka.classifiers.functions.supportVector... [javadoc] Loading source files for package weka.classifiers.lazy... [javadoc] Loading source files for package weka.classifiers.lazy.kstar... [javadoc] Loading source files for package weka.classifiers.meta... [javadoc] Loading source files for package weka.classifiers.meta.ensembleSelection... [javadoc] Loading source files for package weka.classifiers.meta.nestedDichotomies... [javadoc] Loading source files for package weka.classifiers.mi... [javadoc] Loading source files for package weka.classifiers.mi.supportVector... [javadoc] Loading source files for package weka.classifiers.misc... [javadoc] Loading source files for package weka.classifiers.misc.monotone... [javadoc] Loading source files for package weka.classifiers.pmml.consumer... [javadoc] Loading source files for package weka.classifiers.rules... [javadoc] Loading source files for package weka.classifiers.rules.part... [javadoc] Loading source files for package weka.classifiers.trees... [javadoc] Loading source files for package weka.classifiers.trees.adtree... [javadoc] Loading source files for package weka.classifiers.trees.ft... [javadoc] Loading source files for package weka.classifiers.trees.j48... [javadoc] Loading source files for package weka.classifiers.trees.lmt... [javadoc] Loading source files for package weka.classifiers.trees.m5... [javadoc] Loading source files for package weka.classifiers.xml... [javadoc] Loading source files for package weka.clusterers... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.DataObjects... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Databases... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.OPTICS_GUI... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Utils... [javadoc] Loading source files for package weka.core... [javadoc] Loading source files for package weka.core.converters... [javadoc] Loading source files for package weka.core.logging... [javadoc] Loading source files for package weka.core.mathematicalexpression... [javadoc] Loading source files for package weka.core.matrix... [javadoc] Loading source files for package weka.core.neighboursearch... [javadoc] Loading source files for package weka.core.neighboursearch.balltrees... [javadoc] Loading source files for package weka.core.neighboursearch.covertrees... [javadoc] Loading source files for package weka.core.neighboursearch.kdtrees... [javadoc] Loading source files for package weka.core.pmml... [javadoc] Loading source files for package weka.core.stemmers... [javadoc] Loading source files for package weka.core.tokenizers... [javadoc] Loading source files for package weka.core.xml... [javadoc] Loading source files for package weka.datagenerators... [javadoc] Loading source files for package weka.datagenerators.classifiers.classification... [javadoc] Loading source files for package weka.datagenerators.classifiers.regression... [javadoc] Loading source files for package weka.datagenerators.clusterers... [javadoc] Loading source files for package weka.estimators... [javadoc] Loading source files for package weka.experiment... [javadoc] Loading source files for package weka.experiment.xml... [javadoc] Loading source files for package weka.filters... [javadoc] Loading source files for package weka.filters.supervised.attribute... [javadoc] Loading source files for package weka.filters.supervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.attribute... [javadoc] Loading source files for package weka.filters.unsupervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.instance.subsetbyexpression... [javadoc] Loading source files for package weka.gui... [javadoc] Loading source files for package weka.gui.arffviewer... [javadoc] Loading source files for package weka.gui.beans... [javadoc] Loading source files for package weka.gui.beans.xml... [javadoc] Loading source files for package weka.gui.boundaryvisualizer... [javadoc] Loading source files for package weka.gui.ensembleLibraryEditor... [javadoc] Loading source files for package weka.gui.ensembleLibraryEditor.tree... [javadoc] Loading source files for package weka.gui.experiment... [javadoc] Loading source files for package weka.gui.explorer... [javadoc] Loading source files for package weka.gui.graphvisualizer... [javadoc] Loading source files for package weka.gui.sql... [javadoc] Loading source files for package weka.gui.sql.event... [javadoc] Loading source files for package weka.gui.streams... [javadoc] Loading source files for package weka.gui.treevisualizer... [javadoc] Loading source files for package weka.gui.visualize... [javadoc] Loading source files for package weka.gui.visualize.plugins... [javadoc] Constructing Javadoc information... [javadoc] Standard Doclet version 1.6.0_0 [javadoc] Building tree for all the packages and classes... [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/LFSMethods.java:663: warning - @param argument "gr" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/LinearForwardSelection.java:588: warning - @param argument "d" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/LinearForwardSelection.java:736: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:526: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:676: warning - @param argument "bestSolutions" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:676: warning - @param argument "divSolutions" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/ScatterSearchV1.java:1047: warning - @param argument "size" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:605: warning - @param argument "d" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:713: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/Evaluation.java:449: warning - @param argument "forPredictionsString" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/Evaluation.java:1392: warning - @param argument "forPredictionsString" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/Evaluation.java:3033: warning - @return tag cannot be used in method with void return type. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/DMNBtext.java:152: warning - @param argument "instances" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/DMNBtext.java:445: warning - @param argument "instance" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/blr/LaplacePriorImpl.java:139: warning - @param argument "hyperparameter" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/EditableBayesNet.java:1142: warning - @param argument "iNode" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/EditableBayesNet.java:1443: warning - @param argument "iNode" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/MarginCalculator.java:42: warning - @return tag cannot be used in method with void return type. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/MarginCalculator.java:776: warning - @param argument "bayesNet:" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/MarginCalculator.java:816: warning - @param argument "order:" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/MarginCalculator.java:816: warning - @param argument "bAdjacencyMatrix:" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/MarginCalculator.java:241: warning - @param argument "node:" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/search/global/GlobalScoreSearchAlgorithm.java:378: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/search/SearchAlgorithm.java:367: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/bayes/net/search/local/LocalScoreSearchAlgorithm.java:560: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.java:240: warning - @param argument "value" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/functions/supportVector/RegOptimizer.java:434: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/meta/RegressionByDiscretization.java:528: warning - @param argument "numBins" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/trees/FT.java:538: warning - @param argument "c" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/trees/LADTree.java:1323: warning - @param argument "measureName" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/trees/ft/FTtree.java:379: warning - @param argument "" is not a type parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/trees/j48/C45PruneableClassifierTreeG.java:162: warning - @param argument "datathe" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/classifiers/trees/j48/C45PruneableClassifierTreeG.java:1162: warning - @param argument "double" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/clusterers/CLOPE.java:421: warning - @param argument "instances" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/clusterers/Clusterer.java:36: warning - @revision is an unknown tag. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/clusterers/forOPTICSAndDBScan/Utils/PriorityQueueElement.java:80: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/clusterers/forOPTICSAndDBScan/Utils/UpdateQueueElement.java:86: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Environment.java:146: warning - @param argument "a" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Instance.java:763: warning - Tag @author cannot be used in method documentation. It can only be used in the following types of documentation: overview, package, class/interface. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Instances.java:899: warning - Tag @author cannot be used in method documentation. It can only be used in the following types of documentation: overview, package, class/interface. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Instances.java:899: warning - Tag @see: reference not found: randomizeAttribute [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Instances.java:933: warning - Tag @author cannot be used in method documentation. It can only be used in the following types of documentation: overview, package, class/interface. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Instances.java:933: warning - Tag @see: reference not found: undoRandomizeAttribute [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Jython.java:91: warning - @param argument "o" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Jython.java:142: warning - @param argument "filename" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/Jython.java:156: warning - @param argument "filename" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/SparseInstance.java:465: warning - Tag @author cannot be used in method documentation. It can only be used in the following types of documentation: overview, package, class/interface. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/converters/ConverterUtils.java:454: warning - Tag @see: can't find DataSource(InputStream) in weka.core.converters.ConverterUtils.DataSource [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/converters/ConverterUtils.java:472: warning - Tag @see: can't find DataSource(Loader) in weka.core.converters.ConverterUtils.DataSource [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/converters/ConverterUtils.java:436: warning - Tag @see: can't find DataSource(String) in weka.core.converters.ConverterUtils.DataSource [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/neighboursearch/balltrees/MiddleOutConstructor.java:757: warning - @param argument "inst" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/pmml/PMMLFactory.java:152: warning - @returns is an unknown tag. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/core/xml/XStream.java:186: warning - @param argument "o" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/experiment/DensityBasedClustererSplitEvaluator.java:258: warning - @param argument "measureName" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/experiment/DensityBasedClustererSplitEvaluator.java:535: warning - @param argument "newClassifier" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/experiment/DensityBasedClustererSplitEvaluator.java:566: warning - @param argument "newClusterer" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/filters/unsupervised/attribute/StringToNominal.java:294: warning - @param argument "attIndex" is not a parameter name. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/gui/beans/KnowledgeFlowApp.java:2483: warning - @returns is an unknown tag. [javadoc] /build/buildd/weka-3.6.0/src/main/java/weka/gui/beans/KnowledgeFlowApp.java:2662: warning - Tag @author cannot be used in method documentation. It can only be used in the following types of documentation: overview, package, class/interface. [javadoc] Building index for all the packages and classes... [javadoc] Building index for all classes... [javadoc] Generating /build/buildd/weka-3.6.0/doc/stylesheet.css... [javadoc] 73 warnings BUILD SUCCESSFUL Total time: 3 minutes 14 seconds touch debian/stamp-ant-build DEB_ANT_CHECK_TARGET unset, not running checks ( cd wekadocs/manual && \ latex manual.tex ; latex manual.tex ; latex manual.tex ; \ dvipdf manual.dvi ) This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) %&-line parsing enabled. entering extended mode (./manual.tex LaTeX2e <2005/12/01> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/book.cls Document Class: book 2005/09/16 v1.4f Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/bk10.clo)) (/usr/share/texmf-texlive/tex/latex/graphics/epsfig.sty (/usr/share/texmf-texlive/tex/latex/graphics/graphicx.sty (/usr/share/texmf-texlive/tex/latex/graphics/keyval.sty) (/usr/share/texmf-texlive/tex/latex/graphics/graphics.sty (/usr/share/texmf-texlive/tex/latex/graphics/trig.sty) (/etc/texmf/tex/latex/config/graphics.cfg) (/usr/share/texmf-texlive/tex/latex/graphics/dvips.def)))) (/usr/share/texmf-texlive/tex/latex/wrapfig/wrapfig.sty) (./hyphenation.tex) (./extensions.tex) No file manual.aux. [1] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 25--30 [2] No file manual.toc. [3] [4] [5] [6] Chapter 1. (./commandline.tex [7] Overfull \hbox (1.64569pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 23--38 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 40--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--71 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 73--88 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 90--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--125 [] Underfull \vbox (badness 1616) has occurred while \output is active [8] Overfull \hbox (16.8051pt too wide) in paragraph at lines 139--140 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [9] Overfull \hbox (63.24817pt too wide) in paragraph at lines 150--151 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [10] [11] [12] Overfull \hbox (2.46945pt too wide) in paragraph at lines 359--360 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on LaTeX Warning: Citation `platt98' on page 13 undefined on input line 361. [13] Overfull \hbox (20.43309pt too wide) in paragraph at lines 375--402 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 404--419 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 421--456 [] Underfull \vbox (badness 10000) has occurred while \output is active [14] Overfull \hbox (20.43309pt too wide) in paragraph at lines 458--495 [] [15] Overfull \hbox (0.61818pt too wide) in paragraph at lines 506--507 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 535--536 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 517--539 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 541--564 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 576--577 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [16] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [17]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 647--647 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [18] [19] [20] Chapter 2. (./launching.tex [21] LaTeX Warning: Citation `wekawiki' on page 22 undefined on input line 69. Overfull \hbox (9.861pt too wide) in paragraph at lines 70--71 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. LaTeX Warning: Citation `mainextensions' on page 22 undefined on input line 82. [22] LaTeX Warning: Citation `witten' on page 23 undefined on input line 92. ) [23] [24] Chapter 3. (./simplecli.tex [25] [26] Overfull \hbox (67.06445pt too wide) in paragraph at lines 76--78 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [27] [28] Chapter 4. (./explorer.tex LaTeX Warning: Citation `explorertabs' on page 29 undefined on input line 34. 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[51] [52] [53] Underfull \vbox (badness 10000) has occurred while \output is active [54] [55] [56] Underfull \vbox (badness 7704) has occurred while \output is active [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] Overfull \hbox (74.99634pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [61] Overfull \hbox (1.49698pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [62] [63] Underfull \vbox (badness 10000) has occurred while \output is active [64] Underfull \vbox (badness 10000) has occurred while \output is active [65] [66] [67] Overfull \hbox (38.24666pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [68] [69] [70] Overfull \hbox (0.2135pt too wide) in paragraph at lines 568--569 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. 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[77] [78] [79] Underfull \vbox (badness 10000) has occurred while \output is active [80] [81] [82] LaTeX Warning: Citation `bengio' on page 83 undefined on input line 853. LaTeX Warning: Citation `witten' on page 83 undefined on input line 853. Underfull \vbox (badness 10000) has occurred while \output is active [83] ) [84] Chapter 6. (./knowledgeflow.tex [85] [86] [87] [88] LaTeX Warning: Reference `exampleroc' on page 89 undefined on input line 116. Overfull \hbox (36.43697pt too wide) in paragraph at lines 117--119 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 121--123 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [89] [90] [91] [92] LaTeX Warning: Citation `multipleroc' on page 93 undefined on input line 249. 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(./arffviewer.tex [99] [100] [101] [102] ) [103] [104] Chapter 8. (./bayesnet.tex [105] LaTeX Warning: Reference `eq.infer' on page 106 undefined on input line 77. [106] Underfull \vbox (badness 2103) has occurred while \output is active [107] LaTeX Warning: Reference `sec.estimate' on page 108 undefined on input line 161 . LaTeX Warning: Citation `Moore' on page 108 undefined on input line 164. Overfull \hbox (1.83237pt too wide) in paragraph at lines 163--168 \OT1/cmr/m/n/10 ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt/m/n /10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [108] [109] LaTeX Warning: Citation `bouck1995' on page 110 undefined on input line 235. LaTeX Warning: Citation `CooperHerskovits1992' on page 110 undefined on input l ine 264. LaTeX Warning: Citation `heckerman95' on page 110 undefined on input line 270. LaTeX Warning: Citation `CooperHerskovits1992' on page 110 undefined on input l ine 277. 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If missing, a cross-validation will b e performed on the[] [118] Overfull \hbox (14.09583pt too wide) in paragraph at lines 580--580 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [119] Overfull \hbox (57.99673pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. 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This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [122] Overfull \hbox (42.24687pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [123] Overfull \hbox (31.74696pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [124] Overfull \hbox (42.24687pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [125] Overfull \hbox (42.24687pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 944--944 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [126] [127] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1026--1026 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1044--1044 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] LaTeX Warning: Citation `Moore' on page 128 undefined on input line 1045. [128] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1106--1106 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1106--1106 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [129] [130] Underfull \hbox (badness 10000) in paragraph at lines 1164--1174 [131] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1182--1183 [] Underfull \vbox (badness 4569) has occurred while \output is active [132] LaTeX Warning: Citation `cozman' on page 133 undefined on input line 1213. Overfull \hbox (31.52597pt too wide) in paragraph at lines 1215--1227 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 1281--1291 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1299--1302 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [135] [136] LaTeX Warning: Citation `lauritzen' on page 137 undefined on input line 1351. Overfull \hbox (17.96149pt too wide) in paragraph at lines 1358--1359 [] Underfull \vbox (badness 10000) has occurred while \output is active [137] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1392--1393 [] [138] [139] [140] [141] [142] [143] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1553--1559 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1553--1559 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1553--1559 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1560--1565 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1560--1565 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1566--1570 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1571--1579 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1600--1604 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1605--1610 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1605--1610 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [144] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1627--1631 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1627--1631 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1638--1642 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1650--1654 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [145] [146] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1714--1718 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1714--1718 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [147] [148] [149] [150] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [151] [152] Overfull \hbox (2.27603pt too wide) in paragraph at lines 94--95 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [153] [154] [155]) [156] Chapter 10. (./xrff.tex [157] Overfull \hbox (80.24629pt too wide) in paragraph at lines 111--111 [] \OT1/cmtt/m/n/10 [] [158] [159] [160]) [161] [162] Chapter 11. (./converters.tex [163] Overfull \hbox (10.74715pt too wide) in paragraph at lines 54--54 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 83--83 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [164] Overfull \hbox (15.9971pt too wide) in paragraph at lines 88--88 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [165] [166] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 13--14 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: \ OT1/cmtt/m/n/10 http://snowball.tartarus.org/\OT1/cmr/m/n/10 ) [167] Overfull \hbox (46.33209pt too wide) in paragraph at lines 33--34 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 57--58 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [168] Chapter 13. (./databases.tex Overfull \hbox (8.94093pt too wide) in paragraph at lines 17--18 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 (>= 3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 19--21 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, [169] [170] Overfull \hbox (89.10794pt too wide) in paragraph at lines 81--86 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ [171] [172] Overfull \hbox (0.8047pt too wide) in paragraph at lines 179--180 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [173] [174] Chapter 14. (./windows_databases.tex [175] [176] Overfull \hbox (34.407pt too wide) in paragraph at lines 69--70 []\OT1/cmr/m/n/10 Start up the Weka Ex-plorer. If you want to be sure that the \OT1/cmtt/m/n/10 DatabaseUtils.props ) [177] [178] [179] [180] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 10--11 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [181] (./includes/get_wekatechinfo.tex [182] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [183] [184] Chapter 16. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 5--6 [185] Underfull \hbox (badness 10000) in paragraph at lines 70--71 Underfull \hbox (badness 10000) in paragraph at lines 72--73 Underfull \hbox (badness 10000) in paragraph at lines 74--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--86 Underfull \hbox (badness 10000) in paragraph at lines 87--88 Underfull \hbox (badness 10000) in paragraph at lines 93--94 [186] Underfull \hbox (badness 10000) in paragraph at lines 95--96 Overfull \hbox (95.24629pt too wide) in paragraph at lines 103--104 [][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-3.1.8-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 109--110 [][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-3.1.8-bin.jar Underfull \hbox (badness 10000) in paragraph at lines 130--132 Underfull \hbox (badness 10000) in paragraph at lines 135--136 Underfull \hbox (badness 10000) in paragraph at lines 137--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--143 [187] Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 159--165 Overfull \hbox (7.98488pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent []\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 170--171 []\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.Mai n Underfull \hbox (badness 10000) in paragraph at lines 178--179 Underfull \hbox (badness 10000) in paragraph at lines 180--181 Underfull \hbox (badness 10000) in paragraph at lines 201--202 [188] Underfull \hbox (badness 10000) in paragraph at lines 203--204 Underfull \hbox (badness 10000) in paragraph at lines 205--206 Overfull \hbox (37.4968pt too wide) in paragraph at lines 207--208 [][]\OT1/cmtt/m/n/10 https://svn.scms.waikato.ac.nz/svn/weka/branches/book2ndEd -branch/weka Underfull \hbox (badness 10000) in paragraph at lines 207--208 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (42.74675pt too wide) in paragraph at lines 216--217 [][]\OT1/cmtt/m/n/10 https://svn.scms.waikato.ac.nz/svn/weka/branches/book2ndEd -branch/tests Underfull \hbox (badness 10000) in paragraph at lines 236--237 Underfull \hbox (badness 10000) in paragraph at lines 238--239 [189] Underfull \hbox (badness 10000) in paragraph at lines 272--278 Underfull \hbox (badness 10000) in paragraph at lines 272--278 [190] Underfull \hbox (badness 10000) in paragraph at lines 332--337 Underfull \hbox (badness 10000) in paragraph at lines 338--339 Underfull \hbox (badness 10000) in paragraph at lines 340--341 Underfull \hbox (badness 10000) in paragraph at lines 342--343 Overfull \hbox (3.66528pt too wide) in paragraph at lines 344--347 \OT1/cmr/m/n/10 Where the []\OT1/cmtt/m/n/10 \OT1/cmr/m/n/10 cor-re-spond s to a key in the []\OT1/cmtt/m/n/10 GenericPropertiesCreator.props [191] Overfull \hbox (64.49643pt too wide) in paragraph at lines 369--369 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] Underfull \hbox (badness 10000) in paragraph at lines 372--383 Overfull \hbox (121.49606pt too wide) in paragraph at lines 384--385 [][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" weka .gui.experiment.Experimenter Underfull \hbox (badness 10000) in paragraph at lines 384--385 Underfull \hbox (badness 10000) in paragraph at lines 386--387 Overfull \hbox (32.24684pt too wide) in paragraph at lines 410--411 [][]\OT1/cmtt/m/n/10 java -classpath "weka.jar:dummy.jar" weka.gui.experiment.E xperimenter Underfull \hbox (badness 10000) in paragraph at lines 410--411 [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 445--446 Underfull \hbox (badness 10000) in paragraph at lines 447--448 Underfull \hbox (badness 10000) in paragraph at lines 449--450 Underfull \hbox (badness 10000) in paragraph at lines 472--476 [194] Overfull \hbox (17.24684pt too wide) in paragraph at lines 519--519 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 526--529 Underfull \hbox (badness 10000) in paragraph at lines 529--537 Underfull \hbox (badness 10000) in paragraph at lines 537--543 [195] Overfull \hbox (21.24706pt too wide) in paragraph at lines 551--551 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 557--562 Overfull \hbox (26.49701pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (0.24724pt too wide) in paragraph at lines 610--610 []\OT1/cmtt/m/n/10 [] Overfull \hbox (68.49664pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (68.49664pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (52.74678pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (99.99637pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (105.24632pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] [196] Overfull \hbox (57.99673pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (73.7466pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 613--617 [197] Underfull \hbox (badness 10000) in paragraph at lines 670--671 Underfull \hbox (badness 10000) in paragraph at lines 672--673 Overfull \hbox (22.80205pt too wide) in paragraph at lines 696--697 []\OT1/cmr/m/n/10 The DTD for KOML can be found at []\OT1/cmtt/m/n/10 http://ko ala.ilog.fr/XML/koml12.dtd Underfull \hbox (badness 10000) in paragraph at lines 696--697 Underfull \hbox (badness 10000) in paragraph at lines 698--699 Underfull \hbox (badness 10000) in paragraph at lines 700--701 Overfull \hbox (75.44197pt too wide) in paragraph at lines 703--706 \OT1/cmr/m/n/10 put file (see op-tions of []\OT1/cmtt/m/n/10 weka.experiment.Ex periment \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 weka.experiment.RemoteExperimen t [198] LaTeX Warning: Reference `xml_command_line' on page 199 undefined on input line 734. Underfull \hbox (badness 10000) in paragraph at lines 730--737 Overfull \hbox (3.01225pt too wide) in paragraph at lines 746--752 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([]\OT1/cmtt/m/n/10 weka.gui.graphvisual izer.GraphVisualizer\OT1/cmr/m/n/10 ) can save Overfull \hbox (17.24684pt too wide) in paragraph at lines 772--772 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 772--772 [] \OT1/cmtt/m/n/10 [] [199] LaTeX Warning: Reference `xrff' on page 200 undefined on input line 785. ) [200] Chapter 17. (./other_resources.tex Overfull \hbox (131.3022pt too wide) in paragraph at lines 11--14 \OT1/cmr/m/n/10 (Mirrors: []\OT1/cmtt/m/n/10 http://news.gmane.org/gmane.comp.a i.weka\OT1/cmr/m/n/10 , []\OT1/cmtt/m/n/10 http://www.nabble.com/WEKA-f435.html \OT1/cmr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 36--41 [201] Underfull \hbox (badness 10000) in paragraph at lines 42--43 Underfull \hbox (badness 10000) in paragraph at lines 50--53 LaTeX Warning: Reference `RunWeka.ini' on page 202 undefined on input line 61. Underfull \hbox (badness 10000) in paragraph at lines 76--78 Underfull \hbox (badness 10000) in paragraph at lines 79--80 [202] Underfull \hbox (badness 10000) in paragraph at lines 91--93 Overfull \hbox (5.99707pt too wide) in paragraph at lines 94--95 [][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filenam e.arff Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 97--99 Underfull \hbox (badness 10000) in paragraph at lines 100--101 Underfull \hbox (badness 10000) in paragraph at lines 108--111 Underfull \hbox (badness 10000) in paragraph at lines 112--113 Overfull \hbox (16.19777pt too wide) in paragraph at lines 117--123 \OT1/cmr/m/n/10 Get-ting []\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError \OT1 /cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 117--123 Underfull \hbox (badness 10000) in paragraph at lines 124--125 Underfull \hbox (badness 10000) in paragraph at lines 126--127 Underfull \hbox (badness 10000) in paragraph at lines 128--129 Underfull \hbox (badness 10000) in paragraph at lines 130--133 [203] Underfull \hbox (badness 10000) in paragraph at lines 134--135 LaTeX Warning: Reference `CLASSPATH' on page 204 undefined on input line 136. Underfull \hbox (badness 10000) in paragraph at lines 144--147 [204] Overfull \hbox (69.74638pt too wide) in paragraph at lines 221--221 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 230--232 Underfull \hbox (badness 10000) in paragraph at lines 233--234 Underfull \hbox (badness 10000) in paragraph at lines 235--236 Underfull \hbox (badness 10000) in paragraph at lines 237--238 Underfull \hbox (badness 10000) in paragraph at lines 240--241 [205] Underfull \hbox (badness 10000) in paragraph at lines 242--243 LaTeX Warning: Reference `GUIChooserButNotExplorer' on page 206 undefined on in put line 245. Overfull \hbox (9.16362pt too wide) in paragraph at lines 249--250 []\OT1/cmr/m/n/10 Java VM op-tions ([]\OT1/cmtt/m/n/10 http://java.sun.com/docs /hotspot/VMOptions.html\OT1/cmr/m/n/10 ) ) (./bibliography.tex [206] [207] Underfull \hbox (badness 1590) in paragraph at lines 83--86 []\OT1/cmr/m/n/9 Cozman. See \OT1/cmss/m/n/9 http://www-2.cs.cmu.edu/~fgcozman/ Research/ In-ter-change-For- ) [208] (./manual.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (208 pages, 393572 bytes). Transcript written on manual.log. This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) %&-line parsing enabled. entering extended mode (./manual.tex LaTeX2e <2005/12/01> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/book.cls Document Class: book 2005/09/16 v1.4f Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/bk10.clo)) (/usr/share/texmf-texlive/tex/latex/graphics/epsfig.sty (/usr/share/texmf-texlive/tex/latex/graphics/graphicx.sty (/usr/share/texmf-texlive/tex/latex/graphics/keyval.sty) (/usr/share/texmf-texlive/tex/latex/graphics/graphics.sty (/usr/share/texmf-texlive/tex/latex/graphics/trig.sty) (/etc/texmf/tex/latex/config/graphics.cfg) (/usr/share/texmf-texlive/tex/latex/graphics/dvips.def)))) (/usr/share/texmf-texlive/tex/latex/wrapfig/wrapfig.sty) (./hyphenation.tex) (./extensions.tex) (./manual.aux) [1] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 25--30 [2] (./manual.toc [3] [4] [5] [6]) [7] [8] [9] [10] Chapter 1. (./commandline.tex [11] Overfull \hbox (1.64569pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 23--38 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 40--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--71 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 73--88 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 90--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--125 [] Underfull \vbox (badness 1616) has occurred while \output is active [12] Overfull \hbox (16.8051pt too wide) in paragraph at lines 139--140 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [13] Overfull \hbox (63.24817pt too wide) in paragraph at lines 150--151 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [14] [15] [16] Overfull \hbox (2.46945pt too wide) in paragraph at lines 359--360 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [17] Overfull \hbox (20.43309pt too wide) in paragraph at lines 375--402 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 404--419 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 421--456 [] Underfull \vbox (badness 10000) has occurred while \output is active [18] Overfull \hbox (20.43309pt too wide) in paragraph at lines 458--495 [] [19] Overfull \hbox (0.61818pt too wide) in paragraph at lines 506--507 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 535--536 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 517--539 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 541--564 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 576--577 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [20] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [21]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 647--647 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [22] [23] [24] Chapter 2. (./launching.tex [25] Overfull \hbox (9.861pt too wide) in paragraph at lines 70--71 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [26]) [27] [28] Chapter 3. (./simplecli.tex [29] [30] Overfull \hbox (67.06445pt too wide) in paragraph at lines 76--78 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [31] [32] Chapter 4. (./explorer.tex [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 280--290 [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 639--648 [47] [48]) [49] [50] Chapter 5. (./experimenter.tex [51] [52] Underfull \vbox (badness 1082) has occurred while \output is active [53] [54] [55] [56] [57] Underfull \vbox (badness 10000) has occurred while \output is active [58] [59] [60] Underfull \vbox (badness 7704) has occurred while \output is active [61] [62] [63] Underfull \vbox (badness 10000) has occurred while \output is active [64] Overfull \hbox (74.99634pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [65] Overfull \hbox (1.49698pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [66] [67] Underfull \vbox (badness 10000) has occurred while \output is active [68] Underfull \vbox (badness 10000) has occurred while \output is active [69] [70] [71] Overfull \hbox (38.24666pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [72] [73] [74] Overfull \hbox (0.2135pt too wide) in paragraph at lines 568--569 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [75] Underfull \vbox (badness 10000) has occurred while \output is active [76] [77] Overfull \hbox (17.30408pt too wide) in paragraph at lines 609--610 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [78] Overfull \hbox (12.8892pt too wide) in paragraph at lines 660--661 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 668--668 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 676--676 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [79] Overfull \hbox (75.70413pt too wide) in paragraph at lines 701--702 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 701--702 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 708--708 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 714--715 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [80] Overfull \hbox (10.74715pt too wide) in paragraph at lines 751--752 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 751--752 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 751--752 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 753--754 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 753--754 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 753--754 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [81] [82] [83] Underfull \vbox (badness 10000) has occurred while \output is active [84] [85] [86] Underfull \vbox (badness 10000) has occurred while \output is active [87] ) [88] Chapter 6. (./knowledgeflow.tex [89] [90] [91] [92] Overfull \hbox (36.43697pt too wide) in paragraph at lines 117--119 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 121--123 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [93] [94] [95] [96] Overfull \hbox (11.53027pt too wide) in paragraph at lines 252--253 [] [97] [98] Overfull \hbox (24.88557pt too wide) in paragraph at lines 343--344 [] [99] [100] Overfull \hbox (1.07347pt too wide) in paragraph at lines 419--437 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 459--459 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 459--459 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [101] [102] Chapter 7. (./arffviewer.tex [103] [104] [105] [106] ) [107] [108] Chapter 8. (./bayesnet.tex [109] [110] Underfull \vbox (badness 2103) has occurred while \output is active [111] Overfull \hbox (13.24905pt too wide) in paragraph at lines 163--168 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 314--319 [115] Underfull \hbox (badness 10000) in paragraph at lines 335--339 Underfull \hbox (badness 10000) in paragraph at lines 344--359 [116] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 117 [117] Overfull \hbox (106.49606pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 417--425 [118] Underfull \vbox (badness 1867) has occurred while \output is active [119] [120] [121] Overfull \hbox (28.27066pt too wide) in paragraph at lines 580--580 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [122] Overfull \hbox (14.09583pt too wide) in paragraph at lines 580--580 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [123] Overfull \hbox (57.99673pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [124] Overfull \hbox (42.24687pt too wide) in paragraph at lines 682--682 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 682--682 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 682--682 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 703--703 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 703--703 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 703--703 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [125] Overfull \hbox (42.24687pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [126] Overfull \hbox (42.24687pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [127] Overfull \hbox (31.74696pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [128] Overfull \hbox (42.24687pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [129] Overfull \hbox (42.24687pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 944--944 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [130] [131] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1026--1026 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1044--1044 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [132] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1106--1106 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1106--1106 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 1164--1174 [135] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1182--1183 [] Underfull \vbox (badness 4569) has occurred while \output is active [136] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1215--1227 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [137] [138] Underfull \hbox (badness 10000) in paragraph at lines 1281--1291 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1299--1302 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [139] [140] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1358--1359 [] Underfull \vbox (badness 10000) has occurred while \output is active [141] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1392--1393 [] [142] [143] [144] [145] [146] [147] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1553--1559 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1553--1559 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1553--1559 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1560--1565 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1560--1565 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1566--1570 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1571--1579 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1600--1604 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1605--1610 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1605--1610 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [148] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1627--1631 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1627--1631 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1638--1642 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1650--1654 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [149] [150] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1714--1718 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1714--1718 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [151] [152] [153] [154] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [155] [156] Overfull \hbox (2.27603pt too wide) in paragraph at lines 94--95 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [157] [158] [159]) [160] Chapter 10. (./xrff.tex [161] Overfull \hbox (80.24629pt too wide) in paragraph at lines 111--111 [] \OT1/cmtt/m/n/10 [] [162] [163] [164]) [165] [166] Chapter 11. (./converters.tex [167] Overfull \hbox (10.74715pt too wide) in paragraph at lines 54--54 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 83--83 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [168] Overfull \hbox (15.9971pt too wide) in paragraph at lines 88--88 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [169] [170] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 13--14 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: \ OT1/cmtt/m/n/10 http://snowball.tartarus.org/\OT1/cmr/m/n/10 ) [171] Overfull \hbox (46.33209pt too wide) in paragraph at lines 33--34 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 57--58 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [172] Chapter 13. (./databases.tex Overfull \hbox (8.94093pt too wide) in paragraph at lines 17--18 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 (>= 3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 19--21 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, [173] [174] Overfull \hbox (89.10794pt too wide) in paragraph at lines 81--86 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ [175] [176] Overfull \hbox (0.8047pt too wide) in paragraph at lines 179--180 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [177] [178] Chapter 14. (./windows_databases.tex [179] [180] Overfull \hbox (34.407pt too wide) in paragraph at lines 69--70 []\OT1/cmr/m/n/10 Start up the Weka Ex-plorer. If you want to be sure that the \OT1/cmtt/m/n/10 DatabaseUtils.props ) [181] [182] [183] [184] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 10--11 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [185] (./includes/get_wekatechinfo.tex [186] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [187] [188] Chapter 16. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 5--6 [189] Underfull \hbox (badness 10000) in paragraph at lines 70--71 Underfull \hbox (badness 10000) in paragraph at lines 72--73 Underfull \hbox (badness 10000) in paragraph at lines 74--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--86 Underfull \hbox (badness 10000) in paragraph at lines 87--88 Underfull \hbox (badness 10000) in paragraph at lines 93--94 [190] Underfull \hbox (badness 10000) in paragraph at lines 95--96 Overfull \hbox (95.24629pt too wide) in paragraph at lines 103--104 [][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-3.1.8-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 109--110 [][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-3.1.8-bin.jar Underfull \hbox (badness 10000) in paragraph at lines 130--132 Underfull \hbox (badness 10000) in paragraph at lines 135--136 Underfull \hbox (badness 10000) in paragraph at lines 137--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--143 [191] Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 159--165 Overfull \hbox (7.98488pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent []\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 170--171 []\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.Mai n Underfull \hbox (badness 10000) in paragraph at lines 178--179 Underfull \hbox (badness 10000) in paragraph at lines 180--181 Underfull \hbox (badness 10000) in paragraph at lines 201--202 [192] Underfull \hbox (badness 10000) in paragraph at lines 203--204 Underfull \hbox (badness 10000) in paragraph at lines 205--206 Overfull \hbox (37.4968pt too wide) in paragraph at lines 207--208 [][]\OT1/cmtt/m/n/10 https://svn.scms.waikato.ac.nz/svn/weka/branches/book2ndEd -branch/weka Underfull \hbox (badness 10000) in paragraph at lines 207--208 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (42.74675pt too wide) in paragraph at lines 216--217 [][]\OT1/cmtt/m/n/10 https://svn.scms.waikato.ac.nz/svn/weka/branches/book2ndEd -branch/tests Underfull \hbox (badness 10000) in paragraph at lines 236--237 Underfull \hbox (badness 10000) in paragraph at lines 238--239 [193] Underfull \hbox (badness 10000) in paragraph at lines 272--278 Underfull \hbox (badness 10000) in paragraph at lines 272--278 [194] Underfull \hbox (badness 10000) in paragraph at lines 332--337 Underfull \hbox (badness 10000) in paragraph at lines 338--339 Underfull \hbox (badness 10000) in paragraph at lines 340--341 Underfull \hbox (badness 10000) in paragraph at lines 342--343 Overfull \hbox (3.66528pt too wide) in paragraph at lines 344--347 \OT1/cmr/m/n/10 Where the []\OT1/cmtt/m/n/10 \OT1/cmr/m/n/10 cor-re-spond s to a key in the []\OT1/cmtt/m/n/10 GenericPropertiesCreator.props [195] Overfull \hbox (64.49643pt too wide) in paragraph at lines 369--369 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] Underfull \hbox (badness 10000) in paragraph at lines 372--383 Overfull \hbox (121.49606pt too wide) in paragraph at lines 384--385 [][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" weka .gui.experiment.Experimenter Underfull \hbox (badness 10000) in paragraph at lines 384--385 Underfull \hbox (badness 10000) in paragraph at lines 386--387 Overfull \hbox (32.24684pt too wide) in paragraph at lines 410--411 [][]\OT1/cmtt/m/n/10 java -classpath "weka.jar:dummy.jar" weka.gui.experiment.E xperimenter Underfull \hbox (badness 10000) in paragraph at lines 410--411 [196] [197] Underfull \hbox (badness 10000) in paragraph at lines 445--446 Underfull \hbox (badness 10000) in paragraph at lines 447--448 Underfull \hbox (badness 10000) in paragraph at lines 449--450 Underfull \hbox (badness 10000) in paragraph at lines 472--476 [198] Overfull \hbox (17.24684pt too wide) in paragraph at lines 519--519 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 526--529 Underfull \hbox (badness 10000) in paragraph at lines 529--537 Underfull \hbox (badness 10000) in paragraph at lines 537--543 [199] Overfull \hbox (21.24706pt too wide) in paragraph at lines 551--551 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 557--562 Overfull \hbox (26.49701pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (0.24724pt too wide) in paragraph at lines 610--610 []\OT1/cmtt/m/n/10 [] Overfull \hbox (68.49664pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (68.49664pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (52.74678pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (99.99637pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (105.24632pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] [200] Overfull \hbox (57.99673pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (73.7466pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 613--617 [201] Underfull \hbox (badness 10000) in paragraph at lines 670--671 Underfull \hbox (badness 10000) in paragraph at lines 672--673 Overfull \hbox (22.80205pt too wide) in paragraph at lines 696--697 []\OT1/cmr/m/n/10 The DTD for KOML can be found at []\OT1/cmtt/m/n/10 http://ko ala.ilog.fr/XML/koml12.dtd Underfull \hbox (badness 10000) in paragraph at lines 696--697 Underfull \hbox (badness 10000) in paragraph at lines 698--699 Underfull \hbox (badness 10000) in paragraph at lines 700--701 Overfull \hbox (75.44197pt too wide) in paragraph at lines 703--706 \OT1/cmr/m/n/10 put file (see op-tions of []\OT1/cmtt/m/n/10 weka.experiment.Ex periment \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 weka.experiment.RemoteExperimen t [202] Underfull \hbox (badness 10000) in paragraph at lines 730--737 Overfull \hbox (3.01225pt too wide) in paragraph at lines 746--752 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([]\OT1/cmtt/m/n/10 weka.gui.graphvisual izer.GraphVisualizer\OT1/cmr/m/n/10 ) can save Overfull \hbox (17.24684pt too wide) in paragraph at lines 772--772 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 772--772 [] \OT1/cmtt/m/n/10 [] [203]) [204] Chapter 17. (./other_resources.tex Overfull \hbox (131.3022pt too wide) in paragraph at lines 11--14 \OT1/cmr/m/n/10 (Mirrors: []\OT1/cmtt/m/n/10 http://news.gmane.org/gmane.comp.a i.weka\OT1/cmr/m/n/10 , []\OT1/cmtt/m/n/10 http://www.nabble.com/WEKA-f435.html \OT1/cmr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 36--41 [205] Underfull \hbox (badness 10000) in paragraph at lines 42--43 Underfull \hbox (badness 10000) in paragraph at lines 50--53 Underfull \hbox (badness 10000) in paragraph at lines 76--78 Underfull \hbox (badness 10000) in paragraph at lines 79--80 [206] Underfull \hbox (badness 10000) in paragraph at lines 91--93 Overfull \hbox (5.99707pt too wide) in paragraph at lines 94--95 [][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filenam e.arff Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 97--99 Underfull \hbox (badness 10000) in paragraph at lines 100--101 Underfull \hbox (badness 10000) in paragraph at lines 108--111 Underfull \hbox (badness 10000) in paragraph at lines 112--113 Overfull \hbox (16.19777pt too wide) in paragraph at lines 117--123 \OT1/cmr/m/n/10 Get-ting []\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError \OT1 /cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 117--123 Underfull \hbox (badness 10000) in paragraph at lines 124--125 Underfull \hbox (badness 10000) in paragraph at lines 126--127 Underfull \hbox (badness 10000) in paragraph at lines 128--129 Underfull \hbox (badness 10000) in paragraph at lines 130--133 [207] Underfull \hbox (badness 10000) in paragraph at lines 134--135 Underfull \hbox (badness 10000) in paragraph at lines 144--147 [208] Overfull \hbox (69.74638pt too wide) in paragraph at lines 221--221 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 230--232 Underfull \hbox (badness 10000) in paragraph at lines 233--234 Underfull \hbox (badness 10000) in paragraph at lines 235--236 Underfull \hbox (badness 10000) in paragraph at lines 237--238 Underfull \hbox (badness 10000) in paragraph at lines 240--241 [209] Underfull \hbox (badness 10000) in paragraph at lines 242--243 Overfull \hbox (9.16362pt too wide) in paragraph at lines 249--250 []\OT1/cmr/m/n/10 Java VM op-tions ([]\OT1/cmtt/m/n/10 http://java.sun.com/docs /hotspot/VMOptions.html\OT1/cmr/m/n/10 ) ) (./bibliography.tex [210] [211] Underfull \hbox (badness 1590) in paragraph at lines 83--86 []\OT1/cmr/m/n/9 Cozman. See \OT1/cmss/m/n/9 http://www-2.cs.cmu.edu/~fgcozman/ Research/ In-ter-change-For- ) [212] (./manual.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (212 pages, 450056 bytes). Transcript written on manual.log. This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) %&-line parsing enabled. entering extended mode (./manual.tex LaTeX2e <2005/12/01> Babel and hyphenation patterns for english, usenglishmax, dumylang, noh yphenation, loaded. (/usr/share/texmf-texlive/tex/latex/base/book.cls Document Class: book 2005/09/16 v1.4f Standard LaTeX document class (/usr/share/texmf-texlive/tex/latex/base/bk10.clo)) (/usr/share/texmf-texlive/tex/latex/graphics/epsfig.sty (/usr/share/texmf-texlive/tex/latex/graphics/graphicx.sty (/usr/share/texmf-texlive/tex/latex/graphics/keyval.sty) (/usr/share/texmf-texlive/tex/latex/graphics/graphics.sty (/usr/share/texmf-texlive/tex/latex/graphics/trig.sty) (/etc/texmf/tex/latex/config/graphics.cfg) (/usr/share/texmf-texlive/tex/latex/graphics/dvips.def)))) (/usr/share/texmf-texlive/tex/latex/wrapfig/wrapfig.sty) (./hyphenation.tex) (./extensions.tex) (./manual.aux) [1] (/usr/share/texmf-texlive/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 25--30 [2] (./manual.toc [3] [4] [5] [6]) [7] [8] [9] [10] Chapter 1. (./commandline.tex [11] Overfull \hbox (1.64569pt too wide) in paragraph at lines 30--30 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 23--38 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 40--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--71 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 73--88 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 90--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--125 [] Underfull \vbox (badness 1616) has occurred while \output is active [12] Overfull \hbox (16.8051pt too wide) in paragraph at lines 139--140 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [13] Overfull \hbox (63.24817pt too wide) in paragraph at lines 150--151 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [14] [15] [16] Overfull \hbox (2.46945pt too wide) in paragraph at lines 359--360 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [17] Overfull \hbox (20.43309pt too wide) in paragraph at lines 375--402 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 404--419 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 421--456 [] Underfull \vbox (badness 10000) has occurred while \output is active [18] Overfull \hbox (20.43309pt too wide) in paragraph at lines 458--495 [] [19] Overfull \hbox (0.61818pt too wide) in paragraph at lines 506--507 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 531--531 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 535--536 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 517--539 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 541--564 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 576--577 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [20] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [21]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 647--647 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [22] [23] [24] Chapter 2. (./launching.tex [25] Overfull \hbox (9.861pt too wide) in paragraph at lines 70--71 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [26]) [27] [28] Chapter 3. (./simplecli.tex [29] [30] Overfull \hbox (67.06445pt too wide) in paragraph at lines 76--78 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [31] [32] Chapter 4. (./explorer.tex [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 280--290 [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 639--648 [47] [48]) [49] [50] Chapter 5. (./experimenter.tex [51] [52] Underfull \vbox (badness 1082) has occurred while \output is active [53] [54] [55] [56] [57] Underfull \vbox (badness 10000) has occurred while \output is active [58] [59] [60] Underfull \vbox (badness 7704) has occurred while \output is active [61] [62] [63] Underfull \vbox (badness 10000) has occurred while \output is active [64] Overfull \hbox (74.99634pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [65] Overfull \hbox (1.49698pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 393--393 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [66] [67] Underfull \vbox (badness 10000) has occurred while \output is active [68] Underfull \vbox (badness 10000) has occurred while \output is active [69] [70] [71] Overfull \hbox (38.24666pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 520--520 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [72] [73] [74] Overfull \hbox (0.2135pt too wide) in paragraph at lines 568--569 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [75] Underfull \vbox (badness 10000) has occurred while \output is active [76] [77] Overfull \hbox (17.30408pt too wide) in paragraph at lines 609--610 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [78] Overfull \hbox (12.8892pt too wide) in paragraph at lines 660--661 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 668--668 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 676--676 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [79] Overfull \hbox (75.70413pt too wide) in paragraph at lines 701--702 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 701--702 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 708--708 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 714--715 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [80] Overfull \hbox (10.74715pt too wide) in paragraph at lines 751--752 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 751--752 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 751--752 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 753--754 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 753--754 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 753--754 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [81] [82] [83] Underfull \vbox (badness 10000) has occurred while \output is active [84] [85] [86] Underfull \vbox (badness 10000) has occurred while \output is active [87] ) [88] Chapter 6. (./knowledgeflow.tex [89] [90] [91] [92] Overfull \hbox (36.43697pt too wide) in paragraph at lines 117--119 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 121--123 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [93] [94] [95] [96] Overfull \hbox (11.53027pt too wide) in paragraph at lines 252--253 [] [97] [98] Overfull \hbox (24.88557pt too wide) in paragraph at lines 343--344 [] [99] [100] Overfull \hbox (1.07347pt too wide) in paragraph at lines 419--437 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 459--459 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 459--459 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 459--459 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [101] [102] Chapter 7. (./arffviewer.tex [103] [104] [105] [106] ) [107] [108] Chapter 8. (./bayesnet.tex [109] [110] Underfull \vbox (badness 2103) has occurred while \output is active [111] Overfull \hbox (13.24905pt too wide) in paragraph at lines 163--168 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 314--319 [115] Underfull \hbox (badness 10000) in paragraph at lines 335--339 Underfull \hbox (badness 10000) in paragraph at lines 344--359 [116] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 117 [117] Overfull \hbox (106.49606pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 417--425 [118] Underfull \vbox (badness 1867) has occurred while \output is active [119] [120] [121] Overfull \hbox (28.27066pt too wide) in paragraph at lines 580--580 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [122] Overfull \hbox (14.09583pt too wide) in paragraph at lines 580--580 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [123] Overfull \hbox (57.99673pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 627--627 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [124] Overfull \hbox (42.24687pt too wide) in paragraph at lines 682--682 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 682--682 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 682--682 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 703--703 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 703--703 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 703--703 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [125] Overfull \hbox (42.24687pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 721--721 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 747--747 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 757--757 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [126] Overfull \hbox (42.24687pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 767--767 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 782--782 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [127] Overfull \hbox (31.74696pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 812--812 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 832--832 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 852--852 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [128] Overfull \hbox (42.24687pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 876--876 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 897--897 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [129] Overfull \hbox (42.24687pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 926--926 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 939--939 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 944--944 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [130] [131] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1026--1026 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1044--1044 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [132] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1106--1106 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1106--1106 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 1164--1174 [135] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1182--1183 [] Underfull \vbox (badness 4569) has occurred while \output is active [136] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1215--1227 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [137] [138] Underfull \hbox (badness 10000) in paragraph at lines 1281--1291 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1299--1302 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [139] [140] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1358--1359 [] Underfull \vbox (badness 10000) has occurred while \output is active [141] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1392--1393 [] [142] [143] [144] [145] [146] [147] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1553--1559 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1553--1559 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1553--1559 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1560--1565 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1560--1565 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1566--1570 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1571--1579 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1600--1604 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1605--1610 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1605--1610 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [148] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1627--1631 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1627--1631 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1638--1642 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1650--1654 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [149] [150] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1714--1718 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1714--1718 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [151] [152] [153] [154] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 25--25 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [155] [156] Overfull \hbox (2.27603pt too wide) in paragraph at lines 94--95 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [157] [158] [159]) [160] Chapter 10. (./xrff.tex [161] Overfull \hbox (80.24629pt too wide) in paragraph at lines 111--111 [] \OT1/cmtt/m/n/10 [] [162] [163] [164]) [165] [166] Chapter 11. (./converters.tex [167] Overfull \hbox (10.74715pt too wide) in paragraph at lines 54--54 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 83--83 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [168] Overfull \hbox (15.9971pt too wide) in paragraph at lines 88--88 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [169] [170] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 13--14 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: \ OT1/cmtt/m/n/10 http://snowball.tartarus.org/\OT1/cmr/m/n/10 ) [171] Overfull \hbox (46.33209pt too wide) in paragraph at lines 33--34 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 57--58 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [172] Chapter 13. (./databases.tex Overfull \hbox (8.94093pt too wide) in paragraph at lines 17--18 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 (>= 3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 19--21 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, [173] [174] Overfull \hbox (89.10794pt too wide) in paragraph at lines 81--86 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ [175] [176] Overfull \hbox (0.8047pt too wide) in paragraph at lines 179--180 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [177] [178] Chapter 14. (./windows_databases.tex [179] [180] Overfull \hbox (34.407pt too wide) in paragraph at lines 69--70 []\OT1/cmr/m/n/10 Start up the Weka Ex-plorer. If you want to be sure that the \OT1/cmtt/m/n/10 DatabaseUtils.props ) [181] [182] [183] [184] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 10--11 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [185] (./includes/get_wekatechinfo.tex [186] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [187] [188] Chapter 16. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 5--6 [189] Underfull \hbox (badness 10000) in paragraph at lines 70--71 Underfull \hbox (badness 10000) in paragraph at lines 72--73 Underfull \hbox (badness 10000) in paragraph at lines 74--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--86 Underfull \hbox (badness 10000) in paragraph at lines 87--88 Underfull \hbox (badness 10000) in paragraph at lines 93--94 [190] Underfull \hbox (badness 10000) in paragraph at lines 95--96 Overfull \hbox (95.24629pt too wide) in paragraph at lines 103--104 [][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-3.1.8-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 109--110 [][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-3.1.8-bin.jar Underfull \hbox (badness 10000) in paragraph at lines 130--132 Underfull \hbox (badness 10000) in paragraph at lines 135--136 Underfull \hbox (badness 10000) in paragraph at lines 137--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--143 [191] Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 159--165 Overfull \hbox (7.98488pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent []\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 170--171 []\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.Mai n Underfull \hbox (badness 10000) in paragraph at lines 178--179 Underfull \hbox (badness 10000) in paragraph at lines 180--181 Underfull \hbox (badness 10000) in paragraph at lines 201--202 [192] Underfull \hbox (badness 10000) in paragraph at lines 203--204 Underfull \hbox (badness 10000) in paragraph at lines 205--206 Overfull \hbox (37.4968pt too wide) in paragraph at lines 207--208 [][]\OT1/cmtt/m/n/10 https://svn.scms.waikato.ac.nz/svn/weka/branches/book2ndEd -branch/weka Underfull \hbox (badness 10000) in paragraph at lines 207--208 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (42.74675pt too wide) in paragraph at lines 216--217 [][]\OT1/cmtt/m/n/10 https://svn.scms.waikato.ac.nz/svn/weka/branches/book2ndEd -branch/tests Underfull \hbox (badness 10000) in paragraph at lines 236--237 Underfull \hbox (badness 10000) in paragraph at lines 238--239 [193] Underfull \hbox (badness 10000) in paragraph at lines 272--278 Underfull \hbox (badness 10000) in paragraph at lines 272--278 [194] Underfull \hbox (badness 10000) in paragraph at lines 332--337 Underfull \hbox (badness 10000) in paragraph at lines 338--339 Underfull \hbox (badness 10000) in paragraph at lines 340--341 Underfull \hbox (badness 10000) in paragraph at lines 342--343 Overfull \hbox (3.66528pt too wide) in paragraph at lines 344--347 \OT1/cmr/m/n/10 Where the []\OT1/cmtt/m/n/10 \OT1/cmr/m/n/10 cor-re-spond s to a key in the []\OT1/cmtt/m/n/10 GenericPropertiesCreator.props [195] Overfull \hbox (64.49643pt too wide) in paragraph at lines 369--369 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] Underfull \hbox (badness 10000) in paragraph at lines 372--383 Overfull \hbox (121.49606pt too wide) in paragraph at lines 384--385 [][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" weka .gui.experiment.Experimenter Underfull \hbox (badness 10000) in paragraph at lines 384--385 Underfull \hbox (badness 10000) in paragraph at lines 386--387 Overfull \hbox (32.24684pt too wide) in paragraph at lines 410--411 [][]\OT1/cmtt/m/n/10 java -classpath "weka.jar:dummy.jar" weka.gui.experiment.E xperimenter Underfull \hbox (badness 10000) in paragraph at lines 410--411 [196] [197] Underfull \hbox (badness 10000) in paragraph at lines 445--446 Underfull \hbox (badness 10000) in paragraph at lines 447--448 Underfull \hbox (badness 10000) in paragraph at lines 449--450 Underfull \hbox (badness 10000) in paragraph at lines 472--476 [198] Overfull \hbox (17.24684pt too wide) in paragraph at lines 519--519 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 526--529 Underfull \hbox (badness 10000) in paragraph at lines 529--537 Underfull \hbox (badness 10000) in paragraph at lines 537--543 [199] Overfull \hbox (21.24706pt too wide) in paragraph at lines 551--551 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 557--562 Overfull \hbox (26.49701pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (0.24724pt too wide) in paragraph at lines 610--610 []\OT1/cmtt/m/n/10 [] Overfull \hbox (68.49664pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (68.49664pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (52.74678pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (99.99637pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (105.24632pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] [200] Overfull \hbox (57.99673pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (73.7466pt too wide) in paragraph at lines 610--610 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 613--617 [201] Underfull \hbox (badness 10000) in paragraph at lines 670--671 Underfull \hbox (badness 10000) in paragraph at lines 672--673 Overfull \hbox (22.80205pt too wide) in paragraph at lines 696--697 []\OT1/cmr/m/n/10 The DTD for KOML can be found at []\OT1/cmtt/m/n/10 http://ko ala.ilog.fr/XML/koml12.dtd Underfull \hbox (badness 10000) in paragraph at lines 696--697 Underfull \hbox (badness 10000) in paragraph at lines 698--699 Underfull \hbox (badness 10000) in paragraph at lines 700--701 Overfull \hbox (75.44197pt too wide) in paragraph at lines 703--706 \OT1/cmr/m/n/10 put file (see op-tions of []\OT1/cmtt/m/n/10 weka.experiment.Ex periment \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 weka.experiment.RemoteExperimen t [202] Underfull \hbox (badness 10000) in paragraph at lines 730--737 Overfull \hbox (3.01225pt too wide) in paragraph at lines 746--752 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([]\OT1/cmtt/m/n/10 weka.gui.graphvisual izer.GraphVisualizer\OT1/cmr/m/n/10 ) can save Overfull \hbox (17.24684pt too wide) in paragraph at lines 772--772 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 772--772 [] \OT1/cmtt/m/n/10 [] [203]) [204] Chapter 17. (./other_resources.tex Overfull \hbox (131.3022pt too wide) in paragraph at lines 11--14 \OT1/cmr/m/n/10 (Mirrors: []\OT1/cmtt/m/n/10 http://news.gmane.org/gmane.comp.a i.weka\OT1/cmr/m/n/10 , []\OT1/cmtt/m/n/10 http://www.nabble.com/WEKA-f435.html \OT1/cmr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 36--41 [205] Underfull \hbox (badness 10000) in paragraph at lines 42--43 Underfull \hbox (badness 10000) in paragraph at lines 50--53 Underfull \hbox (badness 10000) in paragraph at lines 76--78 Underfull \hbox (badness 10000) in paragraph at lines 79--80 [206] Underfull \hbox (badness 10000) in paragraph at lines 91--93 Overfull \hbox (5.99707pt too wide) in paragraph at lines 94--95 [][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filenam e.arff Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 97--99 Underfull \hbox (badness 10000) in paragraph at lines 100--101 Underfull \hbox (badness 10000) in paragraph at lines 108--111 Underfull \hbox (badness 10000) in paragraph at lines 112--113 Overfull \hbox (16.19777pt too wide) in paragraph at lines 117--123 \OT1/cmr/m/n/10 Get-ting []\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError \OT1 /cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 117--123 Underfull \hbox (badness 10000) in paragraph at lines 124--125 Underfull \hbox (badness 10000) in paragraph at lines 126--127 Underfull \hbox (badness 10000) in paragraph at lines 128--129 Underfull \hbox (badness 10000) in paragraph at lines 130--133 [207] Underfull \hbox (badness 10000) in paragraph at lines 134--135 Underfull \hbox (badness 10000) in paragraph at lines 144--147 [208] Overfull \hbox (69.74638pt too wide) in paragraph at lines 221--221 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 230--232 Underfull \hbox (badness 10000) in paragraph at lines 233--234 Underfull \hbox (badness 10000) in paragraph at lines 235--236 Underfull \hbox (badness 10000) in paragraph at lines 237--238 Underfull \hbox (badness 10000) in paragraph at lines 240--241 [209] Underfull \hbox (badness 10000) in paragraph at lines 242--243 Overfull \hbox (9.16362pt too wide) in paragraph at lines 249--250 []\OT1/cmr/m/n/10 Java VM op-tions ([]\OT1/cmtt/m/n/10 http://java.sun.com/docs /hotspot/VMOptions.html\OT1/cmr/m/n/10 ) ) (./bibliography.tex [210] [211] Underfull \hbox (badness 1590) in paragraph at lines 83--86 []\OT1/cmr/m/n/9 Cozman. See \OT1/cmss/m/n/9 http://www-2.cs.cmu.edu/~fgcozman/ Research/ In-ter-change-For- ) [212] (./manual.aux) ) (see the transcript file for additional information) Output written on manual.dvi (212 pages, 450064 bytes). Transcript written on manual.log. touch debian/stamp-build-weka-doc /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_clean -k dh_installdirs -A mkdir -p "." DEB_ANT_CHECK_TARGET unset, not running checks DEB_ANT_INSTALL_TARGET unset, skipping default ant.mk common-install target dh_installdirs -pweka install -m644 -D dist/weka.jar debian/weka/usr/share/java/weka-3.6.0.jar dh_link -pweka /usr/share/java/weka-3.6.0.jar /usr/share/java/weka.jar dh_installdirs -pweka-doc #main overview page install -m755 -d debian/weka-doc/usr/share/doc/weka-doc install -m644 documentation.css documentation.html weka.gif -t debian/weka-doc/usr/share/doc/weka-doc/ #javadoc cp -r doc debian/weka-doc/usr/share/doc/weka-doc/ #pdf's install -m644 wekadocs/manual/manual.pdf debian/weka-doc/usr/share/doc/weka-doc/WekaManual.pdf touch debian/stamp-install-weka-doc dh_installdocs -pweka ./README dh_installexamples -pweka dh_installman -pweka dh_installinfo -pweka dh_installmenu -pweka dh_installcron -pweka dh_installinit -pweka dh_installdebconf -pweka dh_installemacsen -pweka dh_installcatalogs -pweka dh_installpam -pweka dh_installlogrotate -pweka dh_installlogcheck -pweka dh_installchangelogs -pweka dh_installudev -pweka dh_lintian -pweka dh_install -pweka dh_link -pweka dh_installmime -pweka dh_installdocs -pweka-doc ./README dh_installexamples -pweka-doc dh_installman -pweka-doc dh_installinfo -pweka-doc dh_installmenu -pweka-doc dh_installcron -pweka-doc dh_installinit -pweka-doc dh_installdebconf -pweka-doc dh_installemacsen -pweka-doc dh_installcatalogs -pweka-doc dh_installpam -pweka-doc dh_installlogrotate -pweka-doc dh_installlogcheck -pweka-doc dh_installchangelogs -pweka-doc dh_installudev -pweka-doc dh_lintian -pweka-doc dh_install -pweka-doc dh_link -pweka-doc dh_installmime -pweka-doc dh_strip -pweka dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: dh_strip debug symbol extraction: packages to act on: dh_strip debug symbol extraction: ignored packages: dh_compress -pweka -X .pdf dh_fixperms -pweka dh_makeshlibs -pweka dh_strip -pweka-doc dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: dh_strip debug symbol extraction: packages to act on: dh_strip debug symbol extraction: ignored packages: dh_compress -pweka-doc -X .pdf dh_fixperms -pweka-doc dh_makeshlibs -pweka-doc dh_installdeb -pweka dh_perl -pweka dh_shlibdeps -pweka dh_installdeb -pweka-doc dh_perl -pweka-doc dh_shlibdeps -pweka-doc dh_gencontrol -pweka dpkg-gencontrol: warning: unknown substitution variable ${shlibs:Depends} # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/weka/usr/share/doc ] || \ [ ! -d debian/weka/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/weka/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/weka/usr/share/doc/weka; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/weka/usr/share/doc/weka/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in weka to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/weka/usr/share/gnome/help ]; then \ cd debian/weka && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p weka dh_md5sums -pweka dh_builddeb -pweka pkgstriptranslations: processing control file: ./debian/weka/DEBIAN/control, package weka, directory ./debian/weka ./debian/weka/usr/share/applications/weka.desktop: does not have gettext domain, not stripping pkgstriptranslations: weka does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/weka/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `weka' in `../weka_3.6.0-1_all.deb'. dh_gencontrol -pweka-doc # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/weka-doc/usr/share/doc ] || \ [ ! -d debian/weka-doc/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/weka-doc/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/weka-doc/usr/share/doc/weka-doc; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/weka-doc/usr/share/doc/weka-doc/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in weka-doc to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/weka-doc/usr/share/gnome/help ]; then \ cd debian/weka-doc && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p weka-doc dh_md5sums -pweka-doc dh_builddeb -pweka-doc pkgstriptranslations: processing control file: ./debian/weka/DEBIAN/control, package weka, directory ./debian/weka ./debian/weka/usr/share/applications/weka.desktop: does not have gettext domain, not stripping pkgstriptranslations: weka does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/weka-doc/DEBIAN/control, package weka-doc, directory ./debian/weka-doc pkgstriptranslations: weka-doc does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/weka-doc/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `weka-doc' in `../weka-doc_3.6.0-1_all.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../weka_3.6.0-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090505-2214 chroot-autobuild/build/buildd/weka_3.6.0-1_all.deb: new debian package, version 2.0. size 4374394 bytes: control archive= 1386 bytes. 1098 bytes, 24 lines control 1243 bytes, 17 lines md5sums Package: weka Version: 3.6.0-1 Architecture: all Maintainer: Ubuntu MOTU Developers Original-Maintainer: Soeren Sonnenburg Installed-Size: 5220 Depends: openjdk-6-jre | sun-java6-jre, java-wrappers, cup (>= 0.11a+20060608) Section: science Priority: optional Homepage: http://www.cs.waikato.ac.nz/~ml/weka/ Description: Machine learning algorithms for data mining tasks Weka is a collection of machine learning algorithms in Java that can either be used from the command-line, or called from your own Java code. Weka is also ideally suited for developing new machine learning schemes. . Implemented schemes cover decision tree inducers, rule learners, model tree generators, support vector machines, locally weighted regression, instance-based learning, bagging, boosting, and stacking. Also included are clustering methods, and an association rule learner. Apart from actual learning schemes, Weka also contains a large variety of tools that can be used for pre-processing datasets. . This package contains the binaries and examples. chroot-autobuild/build/buildd/weka-doc_3.6.0-1_all.deb: new debian package, version 2.0. size 6197378 bytes: control archive= 41379 bytes. 1042 bytes, 25 lines control 148108 bytes, 1419 lines md5sums Package: weka-doc Source: weka Version: 3.6.0-1 Architecture: all Maintainer: Ubuntu MOTU Developers Original-Maintainer: Soeren Sonnenburg Installed-Size: 46144 Recommends: weka Section: doc Priority: optional Homepage: http://www.cs.waikato.ac.nz/~ml/weka/ Description: Machine learning algorithms for data mining tasks Weka is a collection of machine learning algorithms in Java that can either be used from the command-line, or called from your own Java code. Weka is also ideally suited for developing new machine learning schemes. . Implemented schemes cover decision tree inducers, rule learners, model tree generators, support vector machines, locally weighted regression, instance-based learning, bagging, boosting, and stacking. Also included are clustering methods, and an association rule learner. Apart from actual learning schemes, Weka also contains a large variety of tools that can be used for pre-processing datasets. . This package contains the documentation. chroot-autobuild/build/buildd/weka_3.6.0-1_all.deb: drwxr-xr-x root/root 0 2009-05-05 22:14 ./ drwxr-xr-x root/root 0 2009-05-05 22:14 ./usr/ drwxr-xr-x root/root 0 2009-05-05 22:14 ./usr/share/ drwxr-xr-x root/root 0 2009-05-05 22:14 ./usr/share/java/ -rw-r--r-- root/root 5079729 2009-05-05 22:14 ./usr/share/java/weka-3.6.0.jar drwxr-xr-x root/root 0 2009-05-05 22:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-05-05 22:14 ./usr/share/doc/weka/ -rw-r--r-- root/root 26819 2009-05-05 22:08 ./usr/share/doc/weka/copyright drwxr-xr-x root/root 0 2009-05-05 22:14 ./usr/share/doc/weka/examples/ -rw-r--r-- root/root 2890 2008-12-18 10:29 ./usr/share/doc/weka/examples/contact-lenses.arff -rw-r--r-- root/root 2318 2008-12-18 10:29 ./usr/share/doc/weka/examples/iris.arff.gz -rw-r--r-- root/root 2572 2008-12-18 10:29 ./usr/share/doc/weka/examples/labor.arff.gz -rw-r--r-- root/root 61951 2008-12-18 10:29 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version. * Update copyright and patches to reflect upstream changes. * Build single .pdf document. * Add ${misc:Depends} to weka-doc dependencies to fix lintian warning. Checksums-Sha1: a388293aa1c8f7eb737af52ed7c7a310a69f1bb1 4374394 weka_3.6.0-1_all.deb cb4a967908f9d2d48a626218f274a78e4d806c88 6197378 weka-doc_3.6.0-1_all.deb Checksums-Sha256: ccb292e84ff603f3f449bcd107bd9f15b98eebb0134ad0baf234708948f7914c 4374394 weka_3.6.0-1_all.deb 6a36d504579bd8c998d4409d0745a7624900db56c143e282d77cfdcdb1b2755a 6197378 weka-doc_3.6.0-1_all.deb Files: 15c650d1e65e8cc769d00ab2a2c2e16b 4374394 science optional weka_3.6.0-1_all.deb c7dc839a9e47f9d6eb233868533ab35f 6197378 doc optional weka-doc_3.6.0-1_all.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/weka-3.6.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-976886-2170953/chroot-autobuild --purge libxmu6 groff-base libx11-data m4 gsfonts fontconfig-config defoma ttf-dejavu-core libkpathsea4 gettext file libxaw7 libhtml-parser-perl libpulse0 libjaxp1.3-java ttf-dejavu openssl liburi-perl ghostscript libxpm4 texlive-common openjdk-6-jdk x11-common autotools-dev rhino openjdk-6-jre-lib libcroco3 texlive-base-bin libxi6 libpopt0 libfreetype6 automake libjpeg62 libssl0.9.8 texlive-pictures libxcb1 tex-common libgcrypt11 diffstat html2text libxerces2-java libfontconfig1 debhelper libkeyutils1 libcupsimage2 libgnutls26 libmagic1 libtiff4 libexpat1 texlive-latex-extra bsdmainutils libxau6 fdupes libx11-6 libkrb53 libglib2.0-0 mime-support libgif4 libnewt0.52 whiptail intltool libxt6 libtasn1-3 libwww-perl libxdmcp6 texlive-base libhtml-tree-perl texlive-doc-base po-debconf quilt cup libxml-parser-perl libpaper1 openjdk-6-jre-headless libgs8 libhtml-tagset-perl libxml2 liblcms1 netbase ed libpng12-0 jflex man-db libice6 intltool-debian libxrender1 texlive-latex-base ant libcups2 ucf cdbs libgpg-error0 ca-certificates libpoppler4 gettext-base openjdk-6-jre ttf-dejavu-extra libaccess-bridge-java libsm6 libxtst6 libxext6 libcap2 libasound2 preview-latex-style tzdata-java java-common ca-certificates-java autoconf (Reading database ... 19470 files and directories currently installed.) 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Purging configuration files for libgpg-error0 ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20090505-2214 Build needed 00:05:35, 217796k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '976886-2170953'] Scanning for processes to kill in build 976886-2170953... Scanning for processes to kill in build /home/buildd/build-976886-2170953/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '976886-2170953'] Unmounting chroot for build 976886-2170953... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '976886-2170953'] Removing build 976886-2170953