RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux brownie 3.2.0-61-generic #93-Ubuntu SMP Fri May 2 21:31:50 UTC 2014 x86_64 Buildd toolchain package versions: launchpad-buildd_126 python-lpbuildd_126 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.6. Syncing the system clock with the buildd NTP service... 6 May 23:14:24 ntpdate[56634]: adjust time server 10.211.37.1 offset 0.000032 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7394603', '/home/buildd/filecache-default/29a30262335ea1a39771c1615f8eea53dfa537cc'] Unpacking chroot for build PACKAGEBUILD-7394603 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7394603'] Mounting chroot for build PACKAGEBUILD-7394603 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7394603', 'deb http://ftpmaster.internal/ubuntu wily main universe', 'deb http://ftpmaster.internal/ubuntu wily-security main universe', 'deb http://ftpmaster.internal/ubuntu wily-updates main universe', 'deb http://ftpmaster.internal/ubuntu wily-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-7394603 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7394603', 'amd64'] Updating debian chroot for build PACKAGEBUILD-7394603 Ign http://ftpmaster.internal wily InRelease Ign http://archive-team.internal wily InRelease Ign http://ftpmaster.internal wily-security InRelease Ign http://ftpmaster.internal wily-updates InRelease Ign http://archive-team.internal wily Release.gpg Ign http://ftpmaster.internal wily-proposed InRelease Get:1 http://archive-team.internal wily Release [726 B] Get:2 http://ftpmaster.internal wily Release.gpg [933 B] Get:3 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:4 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal wily-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal wily Release [217 kB] Get:7 http://ftpmaster.internal wily-security Release [63.5 kB] Get:8 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:9 http://archive-team.internal wily/main amd64 Packages Get:10 http://ftpmaster.internal wily-proposed Release [63.5 kB] Ign http://archive-team.internal wily/main Translation-en Get:11 http://ftpmaster.internal wily/main amd64 Packages [1375 kB] Get:12 http://ftpmaster.internal wily/universe amd64 Packages [6481 kB] Get:13 http://ftpmaster.internal wily/main Translation-en [800 kB] Get:14 http://ftpmaster.internal wily/universe Translation-en [4458 kB] Get:15 http://ftpmaster.internal wily-security/main amd64 Packages [28 B] Get:16 http://ftpmaster.internal wily-security/universe amd64 Packages [28 B] Get:17 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:18 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:19 http://ftpmaster.internal wily-updates/main amd64 Packages [28 B] Get:20 http://ftpmaster.internal wily-updates/universe amd64 Packages [28 B] Get:21 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:22 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Get:23 http://ftpmaster.internal wily-proposed/main amd64 Packages [19.6 kB] Get:24 http://ftpmaster.internal wily-proposed/universe amd64 Packages [263 kB] Get:25 http://ftpmaster.internal wily-proposed/main Translation-en [9740 B] Get:26 http://ftpmaster.internal wily-proposed/universe Translation-en [183 kB] Fetched 14.0 MB in 4s (2813 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: adduser dmsetup init libapparmor1 libcap2-bin libcryptsetup4 libdevmapper1.02.1 libkmod2 systemd systemd-sysv udev The following packages will be upgraded: apt apt-transport-https base-files binutils cpp-4.9 debianutils dpkg dpkg-dev g++-4.9 gcc-4.9 gcc-4.9-base gcc-5-base initscripts libapt-pkg4.12 libasan1 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libcap2 libcilkrts5 libcloog-isl4 libcurl3-gnutls libdpkg-perl libgcc-4.9-dev libgcc1 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl13 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblsan0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libquadmath0 libroken18-heimdal librtmp1 libsqlite3-0 libstdc++-4.9-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 libwind0-heimdal linux-libc-dev login passwd patch perl perl-base perl-modules pkg-create-dbgsym sysv-rc sysvinit-utils tzdata 67 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 56.9 MB of archives. After this operation, 30.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main base-files amd64 7.2ubuntu10 [68.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main debianutils amd64 4.5 [85.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main dpkg amd64 1.17.25ubuntu1 [2220 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libapparmor1 amd64 2.9.1-0ubuntu9 [24.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main libdevmapper1.02.1 amd64 2:1.02.90-2ubuntu1 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main dmsetup amd64 2:1.02.90-2ubuntu1 [40.1 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libudev1 amd64 219-7ubuntu4 [40.8 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libcryptsetup4 amd64 2:1.6.1-1ubuntu7 [68.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libkmod2 amd64 18-3ubuntu1 [39.7 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 amd64 219-7ubuntu4 [73.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily-proposed/main perl amd64 5.20.2-4 [2631 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily-proposed/main perl-base amd64 5.20.2-4 [1221 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily-proposed/main perl-modules all 5.20.2-4 [2508 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.3.7-1ubuntu2 [4176 B] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 amd64 1:2.3.7-1ubuntu2 [34.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libpam0g amd64 1.1.8-3.1ubuntu3 [58.1 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libpam-modules-bin amd64 1.1.8-3.1ubuntu3 [36.6 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main libpam-modules amd64 1.1.8-3.1ubuntu3 [245 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main passwd amd64 1:4.1.5.1-1.1ubuntu4 [760 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main adduser all 3.113+nmu3ubuntu3 [169 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main udev amd64 219-7ubuntu4 [929 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main libcap2 amd64 1:2.24-8 [12.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libcap2-bin amd64 1:2.24-8 [20.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main sysvinit-utils amd64 2.88dsf-53.2ubuntu12 [39.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main sysv-rc all 2.88dsf-53.2ubuntu12 [36.9 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main initscripts amd64 2.88dsf-53.2ubuntu12 [27.9 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main systemd amd64 219-7ubuntu4 [3531 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv amd64 219-7ubuntu4 [14.0 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main init amd64 1.22ubuntu11 [3734 B] Get:30 http://ftpmaster.internal/ubuntu/ wily/main login amd64 1:4.1.5.1-1.1ubuntu4 [302 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main gcc-5-base amd64 5.1.1-5ubuntu1 [16.2 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libgcc1 amd64 1:5.1.1-5ubuntu1 [39.1 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libstdc++6 amd64 5.1.1-5ubuntu1 [399 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libapt-pkg4.12 amd64 1.0.9.7ubuntu4 [682 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main apt amd64 1.0.9.7ubuntu4 [1004 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main libp11-kit0 amd64 0.23.1-2 [107 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily-proposed/main libsqlite3-0 amd64 3.8.9-2 [375 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily-proposed/main libroken18-heimdal amd64 1.6~rc2+dfsg-10 [40.9 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily-proposed/main libasn1-8-heimdal amd64 1.6~rc2+dfsg-10 [177 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main libgssapi-krb5-2 amd64 1.12.1+dfsg-19 [119 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libkrb5-3 amd64 1.12.1+dfsg-19 [270 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libkrb5support0 amd64 1.12.1+dfsg-19 [30.1 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main libk5crypto3 amd64 1.12.1+dfsg-19 [83.7 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main librtmp1 amd64 2.4+20150115.gita107cef-1 [54.7 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libcurl3-gnutls amd64 7.38.0-3ubuntu3 [172 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily-proposed/main libhcrypto4-heimdal amd64 1.6~rc2+dfsg-10 [86.0 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily-proposed/main libheimbase1-heimdal amd64 1.6~rc2+dfsg-10 [29.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily-proposed/main libwind0-heimdal amd64 1.6~rc2+dfsg-10 [48.4 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily-proposed/main libhx509-5-heimdal amd64 1.6~rc2+dfsg-10 [107 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily-proposed/main libkrb5-26-heimdal amd64 1.6~rc2+dfsg-10 [203 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily-proposed/main libheimntlm0-heimdal amd64 1.6~rc2+dfsg-10 [15.2 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgssapi3-heimdal amd64 1.6~rc2+dfsg-10 [94.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily/main libisl13 amd64 0.14-2 [456 kB] Get:54 http://ftpmaster.internal/ubuntu/ wily/main libcloog-isl4 amd64 0.18.3-1 [60.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ wily/main g++-4.9 amd64 4.9.2-10ubuntu13 [17.5 MB] Get:56 http://ftpmaster.internal/ubuntu/ wily/main gcc-4.9 amd64 4.9.2-10ubuntu13 [5650 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily/main cpp-4.9 amd64 4.9.2-10ubuntu13 [5194 kB] Get:58 http://ftpmaster.internal/ubuntu/ wily/main binutils amd64 2.25-5ubuntu7 [2226 kB] Get:59 http://ftpmaster.internal/ubuntu/ wily/main libgomp1 amd64 5.1.1-5ubuntu1 [55.4 kB] Get:60 http://ftpmaster.internal/ubuntu/ wily/main libitm1 amd64 5.1.1-5ubuntu1 [27.6 kB] Get:61 http://ftpmaster.internal/ubuntu/ wily/main libatomic1 amd64 5.1.1-5ubuntu1 [9158 B] Get:62 http://ftpmaster.internal/ubuntu/ wily/main liblsan0 amd64 5.1.1-5ubuntu1 [110 kB] Get:63 http://ftpmaster.internal/ubuntu/ wily/main libtsan0 amd64 5.1.1-5ubuntu1 [251 kB] Get:64 http://ftpmaster.internal/ubuntu/ wily/main libubsan0 amd64 5.1.1-5ubuntu1 [101 kB] Get:65 http://ftpmaster.internal/ubuntu/ wily/main libcilkrts5 amd64 5.1.1-5ubuntu1 [40.4 kB] Get:66 http://ftpmaster.internal/ubuntu/ wily/main libquadmath0 amd64 5.1.1-5ubuntu1 [131 kB] Get:67 http://ftpmaster.internal/ubuntu/ wily/main libstdc++-4.9-dev amd64 4.9.2-10ubuntu13 [1125 kB] Get:68 http://ftpmaster.internal/ubuntu/ wily/main libgcc-4.9-dev amd64 4.9.2-10ubuntu13 [2077 kB] Get:69 http://ftpmaster.internal/ubuntu/ wily/main libasan1 amd64 4.9.2-10ubuntu13 [198 kB] Get:70 http://ftpmaster.internal/ubuntu/ wily/main gcc-4.9-base amd64 4.9.2-10ubuntu13 [15.9 kB] Get:71 http://ftpmaster.internal/ubuntu/ wily/main libpam-runtime all 1.1.8-3.1ubuntu3 [39.8 kB] Get:72 http://ftpmaster.internal/ubuntu/ wily/main tzdata all 2015d-1 [183 kB] Get:73 http://ftpmaster.internal/ubuntu/ wily/main apt-transport-https amd64 1.0.9.7ubuntu4 [27.3 kB] Get:74 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.17.25ubuntu1 [762 kB] Get:75 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.17.25ubuntu1 [194 kB] Get:76 http://ftpmaster.internal/ubuntu/ wily/main patch amd64 2.7.5-1 [90.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ wily/main linux-libc-dev amd64 3.19.0-16.16 [791 kB] Get:78 http://ftpmaster.internal/ubuntu/ wily/main pkg-create-dbgsym all 0.67 [8956 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.9 MB in 2s (27.6 MB/s) (Reading database ... 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Created symlink from /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service to /lib/systemd/system/systemd-timesyncd.service. Initializing machine ID from random generator. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11648 files and directories currently installed.) Preparing to unpack .../systemd-sysv_219-7ubuntu4_amd64.deb ... Unpacking systemd-sysv (219-7ubuntu4) ... 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Preparing to unpack .../patch_2.7.5-1_amd64.deb ... Unpacking patch (2.7.5-1) over (2.7.4-2) ... Preparing to unpack .../linux-libc-dev_3.19.0-16.16_amd64.deb ... Unpacking linux-libc-dev:amd64 (3.19.0-16.16) over (3.19.0-11.11) ... Preparing to unpack .../pkg-create-dbgsym_0.67_all.deb ... Unpacking pkg-create-dbgsym (0.67) over (0.65) ... Setting up perl-modules (5.20.2-4) ... Setting up perl (5.20.2-4) ... Setting up libp11-kit0:amd64 (0.23.1-2) ... Setting up libsqlite3-0:amd64 (3.8.9-2) ... Setting up libroken18-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libasn1-8-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-19) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-19) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-19) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-19) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1) ... Setting up libcurl3-gnutls:amd64 (7.38.0-3ubuntu3) ... Setting up libhcrypto4-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libheimbase1-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libwind0-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libhx509-5-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libkrb5-26-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libheimntlm0-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libgssapi3-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libisl13:amd64 (0.14-2) ... Setting up libcloog-isl4:amd64 (0.18.3-1) ... Setting up gcc-4.9-base:amd64 (4.9.2-10ubuntu13) ... Setting up cpp-4.9 (4.9.2-10ubuntu13) ... Setting up binutils (2.25-5ubuntu7) ... Setting up libgomp1:amd64 (5.1.1-5ubuntu1) ... Setting up libitm1:amd64 (5.1.1-5ubuntu1) ... Setting up libatomic1:amd64 (5.1.1-5ubuntu1) ... Setting up libasan1:amd64 (4.9.2-10ubuntu13) ... Setting up liblsan0:amd64 (5.1.1-5ubuntu1) ... Setting up libtsan0:amd64 (5.1.1-5ubuntu1) ... Setting up libubsan0:amd64 (5.1.1-5ubuntu1) ... Setting up libcilkrts5:amd64 (5.1.1-5ubuntu1) ... Setting up libquadmath0:amd64 (5.1.1-5ubuntu1) ... Setting up libgcc-4.9-dev:amd64 (4.9.2-10ubuntu13) ... Setting up gcc-4.9 (4.9.2-10ubuntu13) ... Setting up libstdc++-4.9-dev:amd64 (4.9.2-10ubuntu13) ... Setting up g++-4.9 (4.9.2-10ubuntu13) ... Setting up apt-transport-https (1.0.9.7ubuntu4) ... Setting up libdpkg-perl (1.17.25ubuntu1) ... Setting up patch (2.7.5-1) ... Setting up dpkg-dev (1.17.25ubuntu1) ... Setting up linux-libc-dev:amd64 (3.19.0-16.16) ... Setting up pkg-create-dbgsym (0.67) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7394603', 'amd64', 'wily-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=wily-proposed', '-A', '--purpose=PRIMARY', '--build-debug-symbols', '--architecture=amd64', '--comp=universe', 'weka_3.6.12-2.dsc'] Initiating build PACKAGEBUILD-7394603 with 12 jobs across 12 processor cores. Kernel reported to sbuild: 3.2.0-61-generic #93-Ubuntu SMP Fri May 2 21:31:50 UTC 2014 x86_64 Automatic build of weka_3.6.12-2 on brownie by sbuild/amd64 1.170.5 Build started at 20150506-2317 ****************************************************************************** weka_3.6.12-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 9), default-jdk, ant, texlive-latex-base, texlive-latex-extra, ghostscript, jflex, cup (>= 0.11a+20060608) Checking for already installed source dependencies... cdbs: missing debhelper: missing default-jdk: missing ant: missing texlive-latex-base: missing texlive-latex-extra: missing ghostscript: missing jflex: missing cup: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper default-jdk ant texlive-latex-base texlive-latex-extra ghostscript jflex cup Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates-java default-jre default-jre-headless dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base gsfonts intltool intltool-debian java-common libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-icu0 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu52 libijs-0.35 libio-html-perl libio-socket-ssl-perl libjasper1 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjson-c2 libkpathsea6 liblcms2-2 libllvm3.6 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libnss3-nssdb libogg0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libpipeline1 libpixman-1-0 libpoppler49 libpotrace0 libptexenc1 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsndfile1 libsynctex1 libthai-data libthai0 libtiff5 libunistring0 liburi-perl libvorbis0a libvorbisenc2 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-parser-perl libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libzzip-0-13 m4 man-db mime-support netbase openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless po-debconf poppler-data preview-latex-style python python-minimal python-scour python2.7 python2.7-minimal shared-mime-info tex-common texlive-base texlive-binaries texlive-latex-recommended texlive-pictures tzdata-java ucf x11-common xdg-utils Suggested packages: ant-doc ant-gcj autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts java-compiler dh-make apparmor-easyprof gettext-doc ghostscript-x hpijs groff equivs libasound2-plugins alsa-utils cups-common fonts-droid librsvg2-common gvfs libdata-dump-perl libjasper-runtime liblcms2-utils libcrypt-ssleay-perl pciutils pcscd pulseaudio libauthen-ntlm-perl less www-browser openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin icedtea-7-jre-jamvm libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei fonts-indic libmail-box-perl poppler-utils fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support perl-tk gv postscript-viewer xpdf-reader pdf-viewer python-pygments libfile-which-perl texlive-pstricks libtcltk-ruby dot2tex prerex gvfs-bin Recommended packages: ant-optional curl wget lynx-cur libasprintf-dev libgettextpo-dev libtxc-dxtn-s2tc0 libtxc-dxtn0 libglib2.0-data xdg-user-dirs hicolor-icon-theme libgtk2.0-bin libhtml-format-perl tcpd libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core ifupdown libxt-dev libgnome2-0 libgnomevfs2-0 libgconf2-4 fonts-dejavu-extra libmail-sendmail-perl lmodern ruby wish texlive-latex-base-doc texlive-fonts-recommended texlive-latex-extra-doc prosper texlive-latex-recommended-doc texlive-pictures-doc libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ant autoconf automake autotools-dev bsdmainutils ca-certificates-java cdbs cup debhelper default-jdk default-jre default-jre-headless dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base ghostscript groff-base gsfonts intltool intltool-debian java-common jflex libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexpat1 libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-icu0 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu52 libijs-0.35 libio-html-perl libio-socket-ssl-perl libjasper1 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjson-c2 libkpathsea6 liblcms2-2 libllvm3.6 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libnss3-nssdb libogg0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libpipeline1 libpixman-1-0 libpoppler49 libpotrace0 libptexenc1 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsndfile1 libsynctex1 libthai-data libthai0 libtiff5 libunistring0 liburi-perl libvorbis0a libvorbisenc2 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-parser-perl libxml2 libxmu6 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libzzip-0-13 m4 man-db mime-support netbase openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless po-debconf poppler-data preview-latex-style python python-minimal python-scour python2.7 python2.7-minimal shared-mime-info tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata-java ucf x11-common xdg-utils 0 upgraded, 189 newly installed, 0 to remove and 0 not upgraded. Need to get 159 MB of archives. After this operation, 463 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main libexpat1 amd64 2.1.0-6ubuntu1 [70.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main libjson-c2 amd64 0.11-4ubuntu2 [22.3 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 amd64 1:5.20-1ubuntu2 [208 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0c2 amd64 0.19.2-2ubuntu1 [6296 B] Get:5 http://ftpmaster.internal/ubuntu/ wily/main libdrm2 amd64 2.4.60-3 [24.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libedit2 amd64 3.1-20140620-2 [81.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libelf1 amd64 0.160-0ubuntu3 [38.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 amd64 2.44.0-1ubuntu3 [1104 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libicu52 amd64 52.1-8 [6781 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 amd64 1.4.0-1 [25.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libxau6 amd64 1:1.0.8-1 [8376 B] Get:12 http://ftpmaster.internal/ubuntu/ wily/main libxdmcp6 amd64 1:1.1.2-1 [11.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libxcb1 amd64 1.10-2ubuntu1 [38.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libx11-data all 2:1.6.2-2ubuntu2 [112 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libx11-6 amd64 2:1.6.2-2ubuntu2 [571 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libxml2 amd64 2.9.2+dfsg1-3 [714 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main groff-base amd64 1.22.3-1 [1183 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main man-db amd64 2.7.0.2-5 [863 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main ucf all 3.0030 [55.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main libfreetype6 amd64 2.5.2-2ubuntu3 [315 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libfontconfig1 amd64 2.11.1-0ubuntu6 [127 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main fontconfig amd64 2.11.1-0ubuntu6 [176 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libasound2-data all 1.0.28-1 [27.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libasound2 amd64 1.0.28-1 [331 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libasyncns0 amd64 0.8-5build1 [12.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main libatk1.0-data all 2.14.0-1ubuntu1 [16.4 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main libatk1.0-0 amd64 2.14.0-1ubuntu1 [56.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libgtk2.0-common all 2.24.27-0ubuntu1 [121 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libpixman-1-0 amd64 0.32.6-3 [237 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libxcb-render0 amd64 1.10-2ubuntu1 [11.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main libxcb-shm0 amd64 1.10-2ubuntu1 [5432 B] Get:36 http://ftpmaster.internal/ubuntu/ wily/main libxrender1 amd64 1:0.9.8-1build1 [18.5 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main libcairo2 amd64 1.14.2-1ubuntu1 [559 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common-data amd64 0.6.31-4ubuntu4 [21.1 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common3 amd64 0.6.31-4ubuntu4 [22.0 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main libavahi-client3 amd64 0.6.31-4ubuntu4 [25.7 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libcups2 amd64 2.0.2-1ubuntu3 [195 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-turbo8 amd64 1.3.0-0ubuntu2 [104 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:44 http://ftpmaster.internal/ubuntu/ wily/main libjasper1 amd64 1.900.1-debian1-2.4 [131 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libjbig0 amd64 2.1-3.1 [26.6 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily/main libtiff5 amd64 4.0.3-12.3ubuntu2 [146 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily/main libgdk-pixbuf2.0-common all 2.31.3-1 [10.3 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily/main libgdk-pixbuf2.0-0 amd64 2.31.3-1 [168 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily/main libthai-data all 0.1.21-1 [131 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily/main libdatrie1 amd64 0.2.9-1 [17.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily/main libthai0 amd64 0.1.21-1 [17.2 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily/main libpango-1.0-0 amd64 1.36.8-3 [152 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily/main libgraphite2-3 amd64 1.2.4-3ubuntu1 [54.6 kB] Get:54 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz0b amd64 0.9.40-2 [136 kB] Get:55 http://ftpmaster.internal/ubuntu/ wily/main libpangoft2-1.0-0 amd64 1.36.8-3 [33.4 kB] Get:56 http://ftpmaster.internal/ubuntu/ wily/main libpangocairo-1.0-0 amd64 1.36.8-3 [20.6 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily/main libxcomposite1 amd64 1:0.4.4-1 [7714 B] Get:58 http://ftpmaster.internal/ubuntu/ wily/main libxfixes3 amd64 1:5.0.1-2 [11.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ wily/main libxcursor1 amd64 1:1.1.14-1 [22.8 kB] Get:60 http://ftpmaster.internal/ubuntu/ wily/main libxdamage1 amd64 1:1.1.4-2 [6946 B] Get:61 http://ftpmaster.internal/ubuntu/ wily/main libxi6 amd64 2:1.7.4-1 [28.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ wily/main libxinerama1 amd64 2:1.1.3-1 [7908 B] Get:63 http://ftpmaster.internal/ubuntu/ wily/main libxrandr2 amd64 2:1.4.2-1 [16.6 kB] Get:64 http://ftpmaster.internal/ubuntu/ wily/main shared-mime-info amd64 1.3-1 [389 kB] Get:65 http://ftpmaster.internal/ubuntu/ wily/main libgtk2.0-0 amd64 2.24.27-0ubuntu1 [1784 kB] Get:66 http://ftpmaster.internal/ubuntu/ wily/main libatk-wrapper-java all 0.30.5-1 [30.4 kB] Get:67 http://ftpmaster.internal/ubuntu/ wily/main libatk-wrapper-java-jni amd64 0.30.5-1 [25.3 kB] Get:68 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 amd64 0.6.8-3 [83.2 kB] Get:69 http://ftpmaster.internal/ubuntu/ wily/main libcupsfilters1 amd64 1.0.67-0ubuntu2 [80.1 kB] Get:70 http://ftpmaster.internal/ubuntu/ wily/main libcupsimage2 amd64 2.0.2-1ubuntu3 [15.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ wily/main libpciaccess0 amd64 0.13.3-1 [18.2 kB] Get:72 http://ftpmaster.internal/ubuntu/ wily/main libdrm-intel1 amd64 2.4.60-3 [57.8 kB] Get:73 http://ftpmaster.internal/ubuntu/ wily/main libdrm-nouveau2 amd64 2.4.60-3 [14.2 kB] Get:74 http://ftpmaster.internal/ubuntu/ wily/main libdrm-radeon1 amd64 2.4.60-3 [23.7 kB] Get:75 http://ftpmaster.internal/ubuntu/ wily/main libogg0 amd64 1.3.2-1 [17.2 kB] Get:76 http://ftpmaster.internal/ubuntu/ wily/main libflac8 amd64 1.3.1-1ubuntu1 [208 kB] Get:77 http://ftpmaster.internal/ubuntu/ wily/main libgif4 amd64 4.1.6-11 [28.6 kB] Get:78 http://ftpmaster.internal/ubuntu/ wily/main libllvm3.6 amd64 1:3.6-2ubuntu1 [8272 kB] Get:79 http://ftpmaster.internal/ubuntu/ wily/main libgl1-mesa-dri amd64 10.5.2-0ubuntu1 [3468 kB] Get:80 http://ftpmaster.internal/ubuntu/ wily/main libglapi-mesa amd64 10.5.2-0ubuntu1 [22.3 kB] Get:81 http://ftpmaster.internal/ubuntu/ wily/main libx11-xcb1 amd64 2:1.6.2-2ubuntu2 [9366 B] Get:82 http://ftpmaster.internal/ubuntu/ wily/main libxcb-dri2-0 amd64 1.10-2ubuntu1 [6710 B] Get:83 http://ftpmaster.internal/ubuntu/ wily/main libxcb-dri3-0 amd64 1.10-2ubuntu1 [5118 B] Get:84 http://ftpmaster.internal/ubuntu/ wily/main libxcb-glx0 amd64 1.10-2ubuntu1 [20.0 kB] Get:85 http://ftpmaster.internal/ubuntu/ wily/main libxcb-present0 amd64 1.10-2ubuntu1 [5254 B] Get:86 http://ftpmaster.internal/ubuntu/ wily/main libxcb-sync1 amd64 1.10-2ubuntu1 [8090 B] Get:87 http://ftpmaster.internal/ubuntu/ wily/main libxshmfence1 amd64 1.2-1 [5042 B] Get:88 http://ftpmaster.internal/ubuntu/ wily/main libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB] Get:89 http://ftpmaster.internal/ubuntu/ wily/main libgl1-mesa-glx amd64 10.5.2-0ubuntu1 [150 kB] Get:90 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz-icu0 amd64 0.9.40-2 [5430 B] Get:91 http://ftpmaster.internal/ubuntu/ wily/main x11-common all 1:7.7+7ubuntu4 [58.6 kB] Get:92 http://ftpmaster.internal/ubuntu/ wily/main libice6 amd64 2:1.0.9-1 [39.2 kB] Get:93 http://ftpmaster.internal/ubuntu/ wily/main libijs-0.35 amd64 0.35-10build1 [15.6 kB] Get:94 http://ftpmaster.internal/ubuntu/ wily/main liblcms2-2 amd64 2.6-3ubuntu2 [137 kB] Get:95 http://ftpmaster.internal/ubuntu/ wily/main libnspr4 amd64 2:4.10.7-1ubuntu1 [112 kB] Get:96 http://ftpmaster.internal/ubuntu/ wily/main libnss3-nssdb all 2:3.17.4-0ubuntu1 [10.6 kB] Get:97 http://ftpmaster.internal/ubuntu/ wily/main libnss3 amd64 2:3.17.4-0ubuntu1 [1123 kB] Get:98 http://ftpmaster.internal/ubuntu/ wily/main libpaper1 amd64 1.1.24+nmu2ubuntu3 [13.4 kB] Get:99 http://ftpmaster.internal/ubuntu/ wily/main libpcsclite1 amd64 1.8.11-3ubuntu1 [21.3 kB] Get:100 http://ftpmaster.internal/ubuntu/ wily/main libpoppler49 amd64 0.30.0-0ubuntu1 [756 kB] Get:101 http://ftpmaster.internal/ubuntu/ wily/main libvorbis0a amd64 1.3.4-2 [87.3 kB] Get:102 http://ftpmaster.internal/ubuntu/ wily/main libvorbisenc2 amd64 1.3.4-2 [70.4 kB] Get:103 http://ftpmaster.internal/ubuntu/ wily/main libsndfile1 amd64 1.0.25-9.1 [137 kB] Get:104 http://ftpmaster.internal/ubuntu/ wily/main libwrap0 amd64 7.6.q-25 [46.2 kB] Get:105 http://ftpmaster.internal/ubuntu/ wily/main libpulse0 amd64 1:6.0-0ubuntu6 [246 kB] Get:106 http://ftpmaster.internal/ubuntu/ wily/main libsigsegv2 amd64 2.10-4 [14.1 kB] Get:107 http://ftpmaster.internal/ubuntu/ wily/main libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:108 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:109 http://ftpmaster.internal/ubuntu/ wily/main libxt6 amd64 1:1.1.4-1 [185 kB] Get:110 http://ftpmaster.internal/ubuntu/ wily/main libxmu6 amd64 2:1.1.2-1 [45.3 kB] Get:111 http://ftpmaster.internal/ubuntu/ wily/main libxpm4 amd64 1:3.5.11-1 [33.1 kB] Get:112 http://ftpmaster.internal/ubuntu/ wily/main libxaw7 amd64 2:1.0.12-2 [168 kB] Get:113 http://ftpmaster.internal/ubuntu/ wily/main libxtst6 amd64 2:1.2.2-1 [14.1 kB] Get:114 http://ftpmaster.internal/ubuntu/ wily/main libzzip-0-13 amd64 0.13.62-3 [26.1 kB] Get:115 http://ftpmaster.internal/ubuntu/ wily/main java-common all 0.52 [131 kB] Get:116 http://ftpmaster.internal/ubuntu/ wily/main default-jre-headless amd64 2:1.7-52 [4086 B] Get:117 http://ftpmaster.internal/ubuntu/ wily/main ca-certificates-java all 20140324 [12.3 kB] Get:118 http://ftpmaster.internal/ubuntu/ wily/main tzdata-java all 2015d-1 [70.0 kB] Get:119 http://ftpmaster.internal/ubuntu/ wily/main openjdk-7-jre-headless amd64 7u79-2.5.5-0ubuntu1 [39.7 MB] Get:120 http://ftpmaster.internal/ubuntu/ wily/main poppler-data all 0.4.7-1 [1476 kB] Get:121 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-minimal amd64 2.7.9-2ubuntu3 [338 kB] Get:122 http://ftpmaster.internal/ubuntu/ wily/main python2.7-minimal amd64 2.7.9-2ubuntu3 [1353 kB] Get:123 http://ftpmaster.internal/ubuntu/ wily/main python-minimal amd64 2.7.9-1 [28.2 kB] Get:124 http://ftpmaster.internal/ubuntu/ wily/main mime-support all 3.58ubuntu1 [31.6 kB] Get:125 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-stdlib amd64 2.7.9-2ubuntu3 [1850 kB] Get:126 http://ftpmaster.internal/ubuntu/ wily/main python2.7 amd64 2.7.9-2ubuntu3 [210 kB] Get:127 http://ftpmaster.internal/ubuntu/ wily/main libpython-stdlib amd64 2.7.9-1 [7754 B] Get:128 http://ftpmaster.internal/ubuntu/ wily/main python amd64 2.7.9-1 [137 kB] Get:129 http://ftpmaster.internal/ubuntu/ wily/main file amd64 1:5.20-1ubuntu2 [20.1 kB] Get:130 http://ftpmaster.internal/ubuntu/ wily/main netbase all 5.3 [12.9 kB] Get:131 http://ftpmaster.internal/ubuntu/ wily/main gettext-base amd64 0.19.2-2ubuntu1 [48.3 kB] Get:132 http://ftpmaster.internal/ubuntu/ wily/main ant all 1.9.4-3ubuntu1 [1880 kB] Get:133 http://ftpmaster.internal/ubuntu/ wily/main m4 amd64 1.4.17-4 [193 kB] Get:134 http://ftpmaster.internal/ubuntu/ wily/main autoconf all 2.69-8 [321 kB] Get:135 http://ftpmaster.internal/ubuntu/ wily/main autotools-dev all 20140911.1 [39.6 kB] Get:136 http://ftpmaster.internal/ubuntu/ wily/main automake all 1:1.14.1-3ubuntu1 [510 kB] Get:137 http://ftpmaster.internal/ubuntu/ wily/main gettext amd64 0.19.2-2ubuntu1 [851 kB] Get:138 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:139 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:140 http://ftpmaster.internal/ubuntu/ wily/main dh-apparmor all 2.9.1-0ubuntu9 [11.1 kB] Get:141 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150101ubuntu1 [727 kB] Get:142 http://ftpmaster.internal/ubuntu/ wily/main liburi-perl all 1.64-1 [84.1 kB] Get:143 http://ftpmaster.internal/ubuntu/ wily/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:144 http://ftpmaster.internal/ubuntu/ wily/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:145 http://ftpmaster.internal/ubuntu/ wily/main libfile-listing-perl all 6.04-1 [9774 B] Get:146 http://ftpmaster.internal/ubuntu/ wily/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:147 http://ftpmaster.internal/ubuntu/ wily/main libhtml-parser-perl amd64 3.71-1build2 [90.8 kB] Get:148 http://ftpmaster.internal/ubuntu/ wily/main libhtml-tree-perl all 5.03-1 [215 kB] Get:149 http://ftpmaster.internal/ubuntu/ wily/main libio-html-perl all 1.001-1 [14.9 kB] Get:150 http://ftpmaster.internal/ubuntu/ wily/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:151 http://ftpmaster.internal/ubuntu/ wily/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:152 http://ftpmaster.internal/ubuntu/ wily/main libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:153 http://ftpmaster.internal/ubuntu/ wily/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:154 http://ftpmaster.internal/ubuntu/ wily/main libnet-ssleay-perl amd64 1.65-1build1 [257 kB] Get:155 http://ftpmaster.internal/ubuntu/ wily/main libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] Get:156 http://ftpmaster.internal/ubuntu/ wily/main libnet-http-perl all 6.07-1 [23.8 kB] Get:157 http://ftpmaster.internal/ubuntu/ wily/main liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:158 http://ftpmaster.internal/ubuntu/ wily/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:159 http://ftpmaster.internal/ubuntu/ wily/main libwww-perl all 6.08-1 [146 kB] Get:160 http://ftpmaster.internal/ubuntu/ wily/main libxml-parser-perl amd64 2.41-3 [201 kB] Get:161 http://ftpmaster.internal/ubuntu/ wily/main intltool all 0.51.0-1 [44.7 kB] Get:162 http://ftpmaster.internal/ubuntu/ wily/main dh-translations all 121 [21.6 kB] Get:163 http://ftpmaster.internal/ubuntu/ wily/main python-scour all 0.26-3build1 [40.5 kB] Get:164 http://ftpmaster.internal/ubuntu/ wily/main cdbs all 0.4.127ubuntu1 [43.5 kB] Get:165 http://ftpmaster.internal/ubuntu/ wily/main cup all 0.11a+20060608-3build1 [120 kB] Get:166 http://ftpmaster.internal/ubuntu/ wily/main openjdk-7-jre amd64 7u79-2.5.5-0ubuntu1 [173 kB] Get:167 http://ftpmaster.internal/ubuntu/ wily/main default-jre amd64 2:1.7-52 [1010 B] Get:168 http://ftpmaster.internal/ubuntu/ wily/main openjdk-7-jdk amd64 7u79-2.5.5-0ubuntu1 [16.1 MB] Get:169 http://ftpmaster.internal/ubuntu/ wily/main default-jdk amd64 2:1.7-52 [1006 B] Get:170 http://ftpmaster.internal/ubuntu/ wily/main libjbig2dec0 amd64 0.11+20120125-1ubuntu1 [48.6 kB] Get:171 http://ftpmaster.internal/ubuntu/ wily/main libgs9-common all 9.15+dfsg-0ubuntu2 [2096 kB] Get:172 http://ftpmaster.internal/ubuntu/ wily/main libgs9 amd64 9.15+dfsg-0ubuntu2 [2059 kB] Get:173 http://ftpmaster.internal/ubuntu/ wily/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] Get:174 http://ftpmaster.internal/ubuntu/ wily/main ghostscript amd64 9.15+dfsg-0ubuntu2 [41.2 kB] Get:175 http://ftpmaster.internal/ubuntu/ wily/main jflex all 1.4.3-3 [1066 kB] Get:176 http://ftpmaster.internal/ubuntu/ wily/main libkpathsea6 amd64 2014.20140926.35254-6build1 [54.3 kB] Get:177 http://ftpmaster.internal/ubuntu/ wily/main libpaper-utils amd64 1.1.24+nmu2ubuntu3 [8244 B] Get:178 http://ftpmaster.internal/ubuntu/ wily/main libpotrace0 amd64 1.12-1 [17.8 kB] Get:179 http://ftpmaster.internal/ubuntu/ wily/main libptexenc1 amd64 2014.20140926.35254-6build1 [33.9 kB] Get:180 http://ftpmaster.internal/ubuntu/ wily/main libsynctex1 amd64 2014.20140926.35254-6build1 [40.8 kB] Get:181 http://ftpmaster.internal/ubuntu/ wily/main tex-common all 5.03 [606 kB] Get:182 http://ftpmaster.internal/ubuntu/ wily/main preview-latex-style all 11.88-1ubuntu1 [186 kB] Get:183 http://ftpmaster.internal/ubuntu/ wily/main xdg-utils all 1.1.0~rc1-2ubuntu10 [53.8 kB] Get:184 http://ftpmaster.internal/ubuntu/ wily/main texlive-binaries amd64 2014.20140926.35254-6build1 [9199 kB] Get:185 http://ftpmaster.internal/ubuntu/ wily/main texlive-base all 2014.20141024-2ubuntu1 [17.7 MB] Get:186 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-base all 2014.20141024-2ubuntu1 [839 kB] Get:187 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-recommended all 2014.20141024-2ubuntu1 [7601 kB] Get:188 http://ftpmaster.internal/ubuntu/ wily/main texlive-pictures all 2014.20141024-2ubuntu1 [3017 kB] Get:189 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-extra all 2014.20141024-1 [7573 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 159 MB in 7s (20.8 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11673 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6ubuntu1) ... Selecting previously unselected package libjson-c2:amd64. Preparing to unpack .../libjson-c2_0.11-4ubuntu2_amd64.deb ... Unpacking libjson-c2:amd64 (0.11-4ubuntu2) ... Selecting previously unselected package libmagic1:amd64. 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Setting up libx11-6:amd64 (2:1.6.2-2ubuntu2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxml2:amd64 (2.9.2+dfsg1-3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libfreetype6:amd64 (2.5.2-2ubuntu3) ... Setting up libfontconfig1:amd64 (2.11.1-0ubuntu6) ... Setting up fontconfig (2.11.1-0ubuntu6) ... Regenerating fonts cache... done. Setting up libasound2-data (1.0.28-1) ... Setting up libasound2:amd64 (1.0.28-1) ... Setting up libasyncns0:amd64 (0.8-5build1) ... Setting up libatk1.0-data (2.14.0-1ubuntu1) ... Setting up libatk1.0-0:amd64 (2.14.0-1ubuntu1) ... Setting up libgtk2.0-common (2.24.27-0ubuntu1) ... Setting up libpixman-1-0:amd64 (0.32.6-3) ... Setting up libxcb-render0:amd64 (1.10-2ubuntu1) ... Setting up libxcb-shm0:amd64 (1.10-2ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.8-1build1) ... Setting up libcairo2:amd64 (1.14.2-1ubuntu1) ... Setting up libavahi-common-data:amd64 (0.6.31-4ubuntu4) ... Setting up libavahi-common3:amd64 (0.6.31-4ubuntu4) ... Setting up libavahi-client3:amd64 (0.6.31-4ubuntu4) ... Setting up libcups2:amd64 (2.0.2-1ubuntu3) ... Setting up libjpeg-turbo8:amd64 (1.3.0-0ubuntu2) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libjasper1:amd64 (1.900.1-debian1-2.4) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libtiff5:amd64 (4.0.3-12.3ubuntu2) ... Setting up libgdk-pixbuf2.0-common (2.31.3-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.31.3-1) ... Setting up libthai-data (0.1.21-1) ... Setting up libdatrie1:amd64 (0.2.9-1) ... Setting up libthai0:amd64 (0.1.21-1) ... Setting up libpango-1.0-0:amd64 (1.36.8-3) ... Setting up libgraphite2-3:amd64 (1.2.4-3ubuntu1) ... Setting up libharfbuzz0b:amd64 (0.9.40-2) ... Setting up libpangoft2-1.0-0:amd64 (1.36.8-3) ... Setting up libpangocairo-1.0-0:amd64 (1.36.8-3) ... Setting up libxcomposite1:amd64 (1:0.4.4-1) ... Setting up libxfixes3:amd64 (1:5.0.1-2) ... Setting up libxcursor1:amd64 (1:1.1.14-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2) ... Setting up libxi6:amd64 (2:1.7.4-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1) ... Setting up libxrandr2:amd64 (2:1.4.2-1) ... Setting up shared-mime-info (1.3-1) ... Setting up libgtk2.0-0:amd64 (2.24.27-0ubuntu1) ... Setting up libatk-wrapper-java (0.30.5-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.30.5-1) ... Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libcupsfilters1:amd64 (1.0.67-0ubuntu2) ... Setting up libcupsimage2:amd64 (2.0.2-1ubuntu3) ... Setting up libpciaccess0:amd64 (0.13.3-1) ... Setting up libdrm-intel1:amd64 (2.4.60-3) ... Setting up libdrm-nouveau2:amd64 (2.4.60-3) ... Setting up libdrm-radeon1:amd64 (2.4.60-3) ... Setting up libogg0:amd64 (1.3.2-1) ... Setting up libflac8:amd64 (1.3.1-1ubuntu1) ... Setting up libgif4:amd64 (4.1.6-11) ... Setting up libllvm3.6:amd64 (1:3.6-2ubuntu1) ... Setting up libgl1-mesa-dri:amd64 (10.5.2-0ubuntu1) ... Setting up libglapi-mesa:amd64 (10.5.2-0ubuntu1) ... Setting up libx11-xcb1:amd64 (2:1.6.2-2ubuntu2) ... Setting up libxcb-dri2-0:amd64 (1.10-2ubuntu1) ... Setting up libxcb-dri3-0:amd64 (1.10-2ubuntu1) ... Setting up libxcb-glx0:amd64 (1.10-2ubuntu1) ... Setting up libxcb-present0:amd64 (1.10-2ubuntu1) ... Setting up libxcb-sync1:amd64 (1.10-2ubuntu1) ... Setting up libxshmfence1:amd64 (1.2-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1) ... Setting up libgl1-mesa-glx:amd64 (10.5.2-0ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/x86_64-linux-gnu_GL.conf (x86_64-linux-gnu_gl_conf) in auto mode Setting up libharfbuzz-icu0:amd64 (0.9.40-2) ... Setting up x11-common (1:7.7+7ubuntu4) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1) ... Setting up libijs-0.35:amd64 (0.35-10build1) ... Setting up liblcms2-2:amd64 (2.6-3ubuntu2) ... Setting up libnspr4:amd64 (2:4.10.7-1ubuntu1) ... Setting up libpaper1:amd64 (1.1.24+nmu2ubuntu3) ... Creating config file /etc/papersize with new version Setting up libpcsclite1:amd64 (1.8.11-3ubuntu1) ... Setting up libpoppler49:amd64 (0.30.0-0ubuntu1) ... Setting up libvorbis0a:amd64 (1.3.4-2) ... Setting up libvorbisenc2:amd64 (1.3.4-2) ... Setting up libsndfile1:amd64 (1.0.25-9.1) ... Setting up libwrap0:amd64 (7.6.q-25) ... Setting up libpulse0:amd64 (1:6.0-0ubuntu6) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libxt6:amd64 (1:1.1.4-1) ... Setting up libxmu6:amd64 (2:1.1.2-1) ... Setting up libxpm4:amd64 (1:3.5.11-1) ... Setting up libxaw7:amd64 (2:1.0.12-2) ... Setting up libxtst6:amd64 (2:1.2.2-1) ... Setting up libzzip-0-13:amd64 (0.13.62-3) ... Setting up java-common (0.52) ... Setting up tzdata-java (2015d-1) ... Setting up poppler-data (0.4.7-1) ... Setting up mime-support (3.58ubuntu1) ... Setting up libpython2.7-stdlib:amd64 (2.7.9-2ubuntu3) ... Setting up python2.7 (2.7.9-2ubuntu3) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up file (1:5.20-1ubuntu2) ... Setting up netbase (5.3) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.14.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up dh-apparmor (2.9.1-0ubuntu9) ... Setting up debhelper (9.20150101ubuntu1) ... Setting up liburi-perl (1.64-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build2) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1build1) ... Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3build1) ... Setting up libjbig2dec0 (0.11+20120125-1ubuntu1) ... Setting up libgs9-common (9.15+dfsg-0ubuntu2) ... update-alternatives: using /usr/share/ghostscript/9.15 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9 (9.15+dfsg-0ubuntu2) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ... Setting up ghostscript (9.15+dfsg-0ubuntu2) ... Setting up libkpathsea6 (2014.20140926.35254-6build1) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... Setting up libpotrace0 (1.12-1) ... Setting up libptexenc1 (2014.20140926.35254-6build1) ... Setting up libsynctex1 (2014.20140926.35254-6build1) ... Setting up tex-common (5.03) ... Setting up preview-latex-style (11.88-1ubuntu1) ... Setting up xdg-utils (1.1.0~rc1-2ubuntu10) ... Setting up texlive-binaries (2014.20140926.35254-6build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2014.20141024-2ubuntu1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2014.20141024-2ubuntu1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Processing triggers for tex-common (5.03) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2014.20141024-2ubuntu1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Setting up texlive-pictures (2014.20141024-2ubuntu1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2014.20141024-1) ... Processing triggers for tex-common (5.03) ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up libwww-perl (6.08-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up intltool (0.51.0-1) ... Setting up dh-translations (121) ... Setting up cdbs (0.4.127ubuntu1) ... Setting up libnss3-nssdb (2:3.17.4-0ubuntu1) ... Setting up libnss3:amd64 (2:3.17.4-0ubuntu1) ... Setting up openjdk-7-jre-headless:amd64 (7u79-2.5.5-0ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20140324) ... Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Adding debian:IGC_A.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:AffirmTrust_Networking.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:Certigna.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:CNNIC_ROOT.pem Adding debian:SG_TRUST_SERVICES_RACINE.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Taiwan_GRCA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:PSCProcert.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Equifax_Secure_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:ACEDICOM_Root.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:WoSign.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Izenpe.com.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Secure_Global_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:CA_Disig.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Thawte_Server_CA.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:SecureTrust_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:ComSign_CA.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Certum_Root_CA.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:ComSign_Secured_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:WoSign_China.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Juur-SK.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:EC-ACC.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:A-Trust-nQual-03.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:ACCVRAIZ1.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:spi-cacert-2008.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem done. Setting up default-jre-headless (2:1.7-52) ... Setting up ant (1.9.4-3ubuntu1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up cup (0.11a+20060608-3build1) ... Setting up openjdk-7-jre:amd64 (7u79-2.5.5-0ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52) ... Setting up openjdk-7-jdk:amd64 (7u79-2.5.5-0ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode Setting up default-jdk (2:1.7-52) ... Setting up jflex (1.4.3-3) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Processing triggers for systemd (219-7ubuntu4) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... done. done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.21-0ubuntu4 make_4.0-8.1 dpkg-dev_1.17.25ubuntu1 gcc-4.9_4.9.2-10ubuntu13 g++-4.9_4.9.2-10ubuntu13 binutils_2.25-5ubuntu7 libstdc++-4.9-dev_4.9.2-10ubuntu13 libstdc++6_5.1.1-5ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sun Apr 26 17:10:52 2015 UTC using RSA key ID 974B3E96 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./weka_3.6.12-2.dsc dpkg-source: info: extracting weka in weka-3.6.12 dpkg-source: info: unpacking weka_3.6.12.orig.tar.gz dpkg-source: info: unpacking weka_3.6.12-2.debian.tar.xz dpkg-source: info: applying jar.patch dpkg-buildpackage: source package weka dpkg-buildpackage: source version 3.6.12-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build weka-3.6.12 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean CDBS: parsing wekaexamples.zip ... Parsing wekaexamples.zip... /bin/sh: 1: unzip: not found test -x debian/rules rm -f wekaexamples.zip.cdbs-config_list dh_clean cd . && /usr/lib/jvm/default-java/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/java/cup.jar:/usr/share/java/JFlex.jar:/usr/lib/jvm/default-java/lib/tools.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -buildfile build.xml clean Buildfile: /build/buildd/weka-3.6.12/build.xml init_all: clean: [delete] Deleting directory /build/buildd/weka-3.6.12/doc BUILD SUCCESSFUL Total time: 0 seconds rm -f debian/stamp-ant-build debian/rules build CDBS: parsing wekaexamples.zip ... Parsing wekaexamples.zip... /bin/sh: 1: unzip: not found test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 cd . && /usr/lib/jvm/default-java/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/java/cup.jar:/usr/share/java/JFlex.jar:/usr/lib/jvm/default-java/lib/tools.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -buildfile build.xml exejar docs Buildfile: /build/buildd/weka-3.6.12/build.xml init_all: init_compile: [mkdir] Created dir: /build/buildd/weka-3.6.12/build/classes compile: [javac] Compiling 1053 source files to /build/buildd/weka-3.6.12/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 1 warning [copy] Copying 505 files to /build/buildd/weka-3.6.12/build/classes [rmic] RMI Compiling 1 class to /build/buildd/weka-3.6.12/build/classes init_dist: [mkdir] Created dir: /build/buildd/weka-3.6.12/dist exejar: [jar] Building jar: /build/buildd/weka-3.6.12/dist/weka.jar init_all: docs: [mkdir] Created dir: /build/buildd/weka-3.6.12/doc [javadoc] Generating Javadoc [javadoc] Javadoc execution [javadoc] Loading source files for package weka.associations... [javadoc] Loading source files for package weka.associations.gsp... [javadoc] Loading source files for package weka.associations.tertius... [javadoc] Loading source files for package weka.attributeSelection... [javadoc] Loading source files for package weka.classifiers... [javadoc] Loading source files for package weka.classifiers.bayes... [javadoc] Loading source files for package weka.classifiers.bayes.blr... [javadoc] Loading source files for package weka.classifiers.bayes.net... [javadoc] Loading source files for package weka.classifiers.bayes.net.estimate... [javadoc] Loading source files for package weka.classifiers.bayes.net.search... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.ci... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.fixed... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.global... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.local... [javadoc] Loading source files for package weka.classifiers.evaluation... [javadoc] Loading source files for package weka.classifiers.functions... [javadoc] Loading source files for package weka.classifiers.functions.neural... [javadoc] Loading source files for package weka.classifiers.functions.pace... [javadoc] Loading source files for package weka.classifiers.functions.supportVector... [javadoc] Loading source files for package weka.classifiers.lazy... [javadoc] Loading source files for package weka.classifiers.lazy.kstar... [javadoc] Loading source files for package weka.classifiers.meta... [javadoc] Loading source files for package weka.classifiers.meta.nestedDichotomies... [javadoc] Loading source files for package weka.classifiers.mi... [javadoc] Loading source files for package weka.classifiers.mi.supportVector... [javadoc] Loading source files for package weka.classifiers.misc... [javadoc] Loading source files for package weka.classifiers.pmml.consumer... [javadoc] Loading source files for package weka.classifiers.rules... [javadoc] Loading source files for package weka.classifiers.rules.part... [javadoc] Loading source files for package weka.classifiers.trees... [javadoc] Loading source files for package weka.classifiers.trees.adtree... [javadoc] Loading source files for package weka.classifiers.trees.ft... [javadoc] Loading source files for package weka.classifiers.trees.j48... [javadoc] Loading source files for package weka.classifiers.trees.lmt... [javadoc] Loading source files for package weka.classifiers.trees.m5... [javadoc] Loading source files for package weka.classifiers.xml... [javadoc] Loading source files for package weka.clusterers... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.DataObjects... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Databases... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.OPTICS_GUI... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Utils... [javadoc] Loading source files for package weka.core... [javadoc] Loading source files for package weka.core.converters... [javadoc] Loading source files for package weka.core.logging... [javadoc] Loading source files for package weka.core.mathematicalexpression... [javadoc] Loading source files for package weka.core.matrix... [javadoc] Loading source files for package weka.core.neighboursearch... [javadoc] Loading source files for package weka.core.neighboursearch.balltrees... [javadoc] Loading source files for package weka.core.neighboursearch.covertrees... [javadoc] Loading source files for package weka.core.neighboursearch.kdtrees... [javadoc] Loading source files for package weka.core.pmml... [javadoc] Loading source files for package weka.core.stemmers... [javadoc] Loading source files for package weka.core.tokenizers... [javadoc] Loading source files for package weka.core.xml... [javadoc] Loading source files for package weka.datagenerators... [javadoc] Loading source files for package weka.datagenerators.classifiers.classification... [javadoc] Loading source files for package weka.datagenerators.classifiers.regression... [javadoc] Loading source files for package weka.datagenerators.clusterers... [javadoc] Loading source files for package weka.estimators... [javadoc] Loading source files for package weka.experiment... [javadoc] Loading source files for package weka.experiment.xml... [javadoc] Loading source files for package weka.filters... [javadoc] Loading source files for package weka.filters.supervised.attribute... [javadoc] Loading source files for package weka.filters.supervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.attribute... [javadoc] Loading source files for package weka.filters.unsupervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.instance.subsetbyexpression... [javadoc] Loading source files for package weka.gui... [javadoc] Loading source files for package weka.gui.arffviewer... [javadoc] Loading source files for package weka.gui.beans... [javadoc] Loading source files for package weka.gui.beans.xml... [javadoc] Loading source files for package weka.gui.boundaryvisualizer... [javadoc] Loading source files for package weka.gui.experiment... [javadoc] Loading source files for package weka.gui.explorer... [javadoc] Loading source files for package weka.gui.graphvisualizer... [javadoc] Loading source files for package weka.gui.hierarchyvisualizer... [javadoc] Loading source files for package weka.gui.sql... [javadoc] Loading source files for package weka.gui.sql.event... [javadoc] Loading source files for package weka.gui.streams... [javadoc] Loading source files for package weka.gui.treevisualizer... [javadoc] Loading source files for package weka.gui.visualize... [javadoc] Loading source files for package weka.gui.visualize.plugins... [javadoc] Constructing Javadoc information... [javadoc] Standard Doclet version 1.7.0_79 [javadoc] Building tree for all the packages and classes... [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/associations/Messages.java:46: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/associations/Messages.java:58: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/associations/Messages.java:76: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/associations/gsp/Messages.java:46: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/associations/gsp/Messages.java:58: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/associations/gsp/Messages.java:76: warning - @return tag has no arguments. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/attributeSelection/LFSMethods.java:663: warning - @param argument "gr" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/attributeSelection/LinearForwardSelection.java:597: warning - @param argument "d" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/attributeSelection/LinearForwardSelection.java:745: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:643: warning - @param argument "d" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:752: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/classifiers/Evaluation.java:3261: warning - Tag @see: can't find printClassifications(Classifier, Instances, String, int, Range, [javadoc] boolean) in weka.classifiers.Evaluation [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/classifiers/Evaluation.java:469: warning - @param argument "forPredictionsString" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/classifiers/Evaluation.java:1462: warning - @param argument "forPredictionsString" is not a parameter name. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/classifiers/Evaluation.java:3148: warning - @return tag cannot be used in method with void return type. [javadoc] /build/buildd/weka-3.6.12/src/main/java/weka/classifiers/bayes/DMNBtext.java:160: warning - @param argument "instances" is not a parameter name. 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[javadoc] 106 warnings BUILD SUCCESSFUL Total time: 1 minute 14 seconds touch debian/stamp-ant-build DEB_ANT_CHECK_TARGET unset, not running checks ( cd wekadocs/manual && \ latex manual.tex ; latex manual.tex ; latex manual.tex ; \ dvipdf manual.dvi ) This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (default): hdvips. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))) (./hyphenation.tex) (./extensions.tex) No file manual.aux. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) Package hyperref Warning: Rerun to get /PageLabels entry. [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] [3] [4] [5] [6] Chapter 1. (./commandline.tex [7] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [8] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [9] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [10] [11] [12] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on LaTeX Warning: Citation `platt98' on page 13 undefined on input line 377. [13] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [14] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [15] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [16] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [17]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [18] [19] [20] Chapter 2. (./launching.tex [21] LaTeX Warning: Citation `wekawiki' on page 22 undefined on input line 85. Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. LaTeX Warning: Citation `mainextensions' on page 22 undefined on input line 98. [22] LaTeX Warning: Citation `witten' on page 23 undefined on input line 108. ) [23] [24] Chapter 3. (./simplecli.tex [25] [26] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [27] [28] Chapter 4. (./explorer.tex LaTeX Warning: Citation `explorertabs' on page 29 undefined on input line 52. [29] [30] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [34] [35] [36] [37] LaTeX Warning: Citation `drummond' on page 38 undefined on input line 517. LaTeX Warning: Citation `explorervisplugins' on page 38 undefined on input line 521. [38] LaTeX Warning: Reference `sec:classifier' on page 39 undefined on input line 54 6. [39] [40] [41] LaTeX Warning: Reference `sec:classifier' on page 42 undefined on input line 64 0. [42] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [43] [44]) [45] [46] Chapter 5. (./experimenter.tex [47] [48] Underfull \vbox (badness 1082) has occurred while \output is active [49] [50] LaTeX Warning: Citation `quinlan' on page 51 undefined on input line 152. LaTeX Warning: Citation `bengio' on page 51 undefined on input line 154. [51] [52] [53] Underfull \vbox (badness 10000) has occurred while \output is active [54] [55] [56] Underfull \vbox (badness 7704) has occurred while \output is active [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [61] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [62] [63] Underfull \vbox (badness 10000) has occurred while \output is active [64] Underfull \vbox (badness 10000) has occurred while \output is active [65] [66] [67] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [68] [69] [70] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [71] Underfull \vbox (badness 10000) has occurred while \output is active [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [74] [75] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [76] LaTeX Warning: Citation `hsql' on page 77 undefined on input line 667. LaTeX Warning: Citation `mysql' on page 77 undefined on input line 667. Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . LaTeX Warning: Citation `subversion' on page 77 undefined on input line 690. [77] LaTeX Warning: Citation `subversion' on page 78 undefined on input line 733. Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [78] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [79] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [80] LaTeX Warning: Citation `subversion' on page 81 undefined on input line 840. [81] [82] Underfull \vbox (badness 10000) has occurred while \output is active [83] [84] [85] LaTeX Warning: Citation `bengio' on page 86 undefined on input line 934. LaTeX Warning: Citation `witten' on page 86 undefined on input line 934. Underfull \vbox (badness 10000) has occurred while \output is active [86] ) [87] [88] Chapter 6. (./knowledgeflow.tex [89] [90] [91] [92] LaTeX Warning: Reference `exampleroc' on page 93 undefined on input line 132. Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [93] [94] [95] [96] LaTeX Warning: Citation `multipleroc' on page 97 undefined on input line 265. 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(./arffviewer.tex [103] [104] [105] [106] ) [107] [108] Chapter 8. (./bayesnet.tex [109] LaTeX Warning: Reference `eq.infer' on page 110 undefined on input line 93. [110] Underfull \vbox (badness 2103) has occurred while \output is active [111] LaTeX Warning: Reference `sec.estimate' on page 112 undefined on input line 178 . LaTeX Warning: Citation `Moore' on page 112 undefined on input line 181. Overfull \hbox (1.83237pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt/m/n /10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [112] [113] LaTeX Warning: Citation `bouck1995' on page 114 undefined on input line 252. LaTeX Warning: Citation `CooperHerskovits1992' on page 114 undefined on input l ine 281. LaTeX Warning: Citation `heckerman95' on page 114 undefined on input line 287. LaTeX Warning: Citation `CooperHerskovits1992' on page 114 undefined on input l ine 294. 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If missing, a cross-validation will b e performed on the[] [122] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [123] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. 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This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [127] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [128] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [129] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [130] [131] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] LaTeX Warning: Citation `Moore' on page 132 undefined on input line 1062. [132] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [135] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [136] LaTeX Warning: Citation `cozman' on page 137 undefined on input line 1230. Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [137] [138] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [139] [140] LaTeX Warning: Citation `lauritzen' on page 141 undefined on input line 1368. Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [141] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [142] [143] [144] [145] [146] [147] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [148] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [149] [150] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [151] [152] [153] [154] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [155] [156] Overfull \hbox (2.27603pt too wide) in paragraph at lines 110--111 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [157] [158] [159]) [160] Chapter 10. (./xrff.tex [161] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [162] [163] [164]) [165] [166] Chapter 11. (./converters.tex [167] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [168] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [169] [170] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [171] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [172] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [173] [174] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [175] [176] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [177] [178] Chapter 14. (./windows_databases.tex [179] [180]) [181] [182] [183] [184] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [185] (./includes/get_wekatechinfo.tex [186] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [187] [188] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [189] LaTeX Warning: Citation `wekawiki' on page 190 undefined on input line 108. LaTeX Warning: Citation `wekaexamples' on page 190 undefined on input line 111. Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [190] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [191] LaTeX Warning: Reference `databases' on page 192 undefined on input line 168. LaTeX Warning: Citation `wekaexamples' on page 192 undefined on input line 174. Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [192] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [193] [194] LaTeX Warning: Citation `wekaexamples' on page 195 undefined on input line 319. Overfull \hbox (21.69957pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [195] Overfull \vbox (30.71523pt too high) has occurred while \output is active [196] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [197] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [198] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [199] LaTeX Warning: Reference `api_filtering' on page 200 undefined on input line 56 9. Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [200] LaTeX Warning: Citation `wekaexamples' on page 201 undefined on input line 650. [201] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [202] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). LaTeX Warning: Reference `api_classification' on page 203 undefined on input li ne 729. [203] LaTeX Warning: Citation `wekaexamples' on page 204 undefined on input line 780. LaTeX Warning: Reference `api_loading_data' on page 204 undefined on input line 823. Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [204] [205] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation LaTeX Warning: Reference `api_randomizing_data' on page 206 undefined on input line 890. [206] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [207] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [208] LaTeX Warning: Reference `api_filtering_onthefly' on page 209 undefined on inpu t line 996. Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [209] LaTeX Warning: Citation `wekaexamples' on page 210 undefined on input line 1069 . Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [210] Overfull \vbox (81.61792pt too high) has occurred while \output is active [211] [212] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [213] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [214] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [215] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These LaTeX Warning: Citation `wekaexamples' on page 216 undefined on input line 1339 . [216] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [217] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [218] [219] LaTeX Warning: Reference `api_loading_data' on page 220 undefined on input line 1459. LaTeX Warning: Citation `wekaexamples' on page 220 undefined on input line 1462 . Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [220] [221] LaTeX Warning: Citation `wekaexamples' on page 222 undefined on input line 1562 . Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [222] LaTeX Warning: Citation `dotformat' on page 223 undefined on input line 1641. Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [223] LaTeX Warning: Citation `dotformat' on page 224 undefined on input line 1673. LaTeX Warning: Citation `cozman' on page 224 undefined on input line 1674. [224] [225] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [226] Chapter 17. (./extending.tex LaTeX Warning: Reference `genericobjecteditor' on page 227 undefined on input l ine 35. [227] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [228] Overfull \vbox (64.17354pt too high) has occurred while \output is active [229] [230] [231] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] LaTeX Warning: Reference `classifier_capabilities' on page 232 undefined on inp ut line 200. Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [232] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [233] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [236] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [237] Overfull \vbox (104.0pt too high) has occurred while \output is active [238] [239] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [240] (./extending_filter.tex LaTeX Warning: Reference `filter_capabilities' on page 241 undefined on input l ine 63. LaTeX Warning: Reference `filter_optionhandling' on page 241 undefined on input line 66. Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [241] [242] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [243] (./includes/BatchFilter.tex) [244] (./includes/BatchFilter2.tex) [245] (./includes/BatchFilter3.tex) Overfull \vbox (69.04163pt too high) has occurred while \output is active [246] (./includes/StreamFilter.tex) [247] LaTeX Warning: Reference `filter_revisions' on page 248 undefined on input line 236. LaTeX Warning: Reference `classifier_methods' on page 248 undefined on input li ne 247. LaTeX Warning: Reference `classifier_parameters' on page 248 undefined on input line 248. [248] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [249] LaTeX Warning: Reference `filter_revisions' on page 250 undefined on input line 267. LaTeX Warning: Reference `classifier_methods' on page 250 undefined on input li ne 278. [250] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [251] LaTeX Warning: Reference `classifier_capabilities' on page 252 undefined on inp ut line 314. Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter LaTeX Warning: Reference `classifier_javadoc' on page 252 undefined on input li ne 337. Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' LaTeX Warning: Reference `classifier_revisions' on page 252 undefined on input line 348. [252] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [253] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [254] LaTeX Warning: Reference `classifier_capabilities' on page 255 undefined on inp ut line 87. Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [255] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [256] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [257] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] LaTeX Warning: Reference `classifier_capabilities' on page 258 undefined on inp ut line 261. [258] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [259] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props LaTeX Warning: Citation `wekaexamples' on page 260 undefined on input line 52. Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [260] Overfull \vbox (91.59024pt too high) has occurred while \output is active [261] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [262] [263] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [264] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [265] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [266] LaTeX Warning: Citation `wekawiki' on page 267 undefined on input line 375. Overfull \vbox (57.81944pt too high) has occurred while \output is active [267] LaTeX Warning: Citation `wekaexamples' on page 268 undefined on input line 402. Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [268] [269] LaTeX Warning: Citation `jmathplot' on page 270 undefined on input line 453. )) [270] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [271] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-5.1.7-bin.jar [272] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [273] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent []\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 []\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.Mai n Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [274] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [275] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the []\O T1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [276] Overfull \vbox (24.59024pt too high) has occurred while \output is active [277] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the []\OT1/cmtt/m/n/10 \OT1/cmr/m/n/10 cor-re-spond s to a key in the []\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [278] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" weka .gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [279] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [282] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [283] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [284] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [285] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [286] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of []\OT1/cmtt/m/n/10 weka.experiment.Ex periment \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 weka.experiment.RemoteExperimen t LaTeX Warning: Reference `xml_command_line' on page 287 undefined on input line 787. Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([]\OT1/cmtt/m/n/10 weka.gui.graphvisual izer.GraphVisualizer\OT1/cmr/m/n/10 ) can save [287] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] LaTeX Warning: Reference `xrff' on page 288 undefined on input line 838. ) [288] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [289] Underfull \hbox (badness 10000) in paragraph at lines 65--68 LaTeX Warning: Reference `RunWeka.ini' on page 290 undefined on input line 76. Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [290] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filenam e.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting []\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError \OT1 /cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [291] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 LaTeX Warning: Reference `CLASSPATH' on page 292 undefined on input line 151. Underfull \hbox (badness 10000) in paragraph at lines 159--162 [292] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [293] Underfull \hbox (badness 10000) in paragraph at lines 257--258 LaTeX Warning: Reference `GUIChooserButNotExplorer' on page 294 undefined on in put line 260. Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [294] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [295] Overfull \vbox (45.33775pt too high) has occurred while \output is active [296] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [297] (./manual.aux) Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (297 pages, 792280 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (default): hdvips. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))) (./hyphenation.tex) (./extensions.tex) (./manual.aux) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./manual.out) (./manual.out) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] (./manual.toc [3] [4] [5] [6] [7] [8]) [9] [10] [11] [12] Chapter 1. (./commandline.tex [13] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [14] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [15] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [16] [17] [18] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [19] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [20] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [21] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [22] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [23]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [24] [25] [26] Chapter 2. (./launching.tex [27] Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [28]) [29] [30] Chapter 3. (./simplecli.tex [31] [32] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [33] [34] Chapter 4. (./explorer.tex [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [40] [41] [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [49] [50]) [51] [52] Chapter 5. (./experimenter.tex [53] [54] Underfull \vbox (badness 1082) has occurred while \output is active [55] [56] [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] [61] [62] Underfull \vbox (badness 7704) has occurred while \output is active [63] [64] [65] Underfull \vbox (badness 10000) has occurred while \output is active [66] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [67] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [68] [69] Underfull \vbox (badness 10000) has occurred while \output is active [70] Underfull \vbox (badness 10000) has occurred while \output is active [71] [72] [73] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [74] [75] [76] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [77] Underfull \vbox (badness 10000) has occurred while \output is active [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [80] [81] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [82] Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [83] Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [84] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [85] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [86] [87] [88] Underfull \vbox (badness 10000) has occurred while \output is active [89] [90] [91] Underfull \vbox (badness 10000) has occurred while \output is active [92] ) [93] [94] Chapter 6. (./knowledgeflow.tex [95] [96] [97] [98] Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [99] [100] [101] [102] Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [103] [104] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [105] [106] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [107] [108] Chapter 7. (./arffviewer.tex [109] [110] [111] [112] ) [113] [114] Chapter 8. (./bayesnet.tex [115] [116] Underfull \vbox (badness 2103) has occurred while \output is active [117] Overfull \hbox (13.24905pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 331--336 [121] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [122] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 123 [123] Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [124] Underfull \vbox (badness 1867) has occurred while \output is active [125] [126] [127] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [128] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [129] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [130] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [131] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [132] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [133] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [134] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [135] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [136] [137] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [138] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [141] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [142] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [145] [146] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [147] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [148] [149] [150] [151] [152] [153] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [154] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [155] [156] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [157] [158] [159] [160] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [161] [162] Overfull \hbox (2.27603pt too wide) in paragraph at lines 110--111 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [163] [164] [165]) [166] Chapter 10. (./xrff.tex [167] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [168] [169] [170]) [171] [172] Chapter 11. (./converters.tex [173] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [174] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [175] [176] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [177] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [178] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [179] [180] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [181] [182] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [183] [184] Chapter 14. (./windows_databases.tex [185] [186]) [187] [188] [189] [190] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [191] (./includes/get_wekatechinfo.tex [192] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [193] [194] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [195] Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [196] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [197] Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [198] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [199] [200] Overfull \hbox (21.26906pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [201] Overfull \vbox (30.71523pt too high) has occurred while \output is active [202] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [203] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [204] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [205] Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [206] [207] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [208] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). [209] Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [210] [211] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation [212] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [213] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [214] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [215] Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [216] Overfull \vbox (81.61792pt too high) has occurred while \output is active [217] [218] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [219] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [220] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [221] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These [222] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [223] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [224] [225] Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [226] [227] Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [228] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [229] [230] [231] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [232] Chapter 17. (./extending.tex [233] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [234] Overfull \vbox (64.17354pt too high) has occurred while \output is active [235] [236] [237] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [238] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [239] [240] [241] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [242] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [243] Overfull \vbox (104.0pt too high) has occurred while \output is active [244] [245] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [246] (./extending_filter.tex Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [247] [248] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [249] (./includes/BatchFilter.tex) [250] (./includes/BatchFilter2.tex) [251] (./includes/BatchFilter3.tex) Overfull \vbox (69.04163pt too high) has occurred while \output is active [252] (./includes/StreamFilter.tex) [253] [254] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [255] [256] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [257] Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' [258] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [259] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [260] Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [261] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [262] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [263] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] [264] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [265] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [266] Overfull \vbox (91.59024pt too high) has occurred while \output is active [267] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [268] [269] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [270] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [271] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [272] Overfull \vbox (57.81944pt too high) has occurred while \output is active [273] Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [274] [275] )) [276] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [277] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-5.1.7-bin.jar [278] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [279] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent []\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 []\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.Mai n Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [280] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [281] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the []\O T1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [282] Overfull \vbox (24.59024pt too high) has occurred while \output is active [283] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the []\OT1/cmtt/m/n/10 \OT1/cmr/m/n/10 cor-re-spond s to a key in the []\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [284] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" weka .gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [285] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [288] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [289] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [290] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [291] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [292] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of []\OT1/cmtt/m/n/10 weka.experiment.Ex periment \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 weka.experiment.RemoteExperimen t Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([]\OT1/cmtt/m/n/10 weka.gui.graphvisual izer.GraphVisualizer\OT1/cmr/m/n/10 ) can save [293] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] ) [294] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [295] Underfull \hbox (badness 10000) in paragraph at lines 65--68 Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [296] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filenam e.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting []\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError \OT1 /cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [297] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 Underfull \hbox (badness 10000) in paragraph at lines 159--162 [298] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [299] Underfull \hbox (badness 10000) in paragraph at lines 257--258 Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [300] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [301] Overfull \vbox (45.33775pt too high) has occurred while \output is active [302] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [303] (./manual.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (303 pages, 965588 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (default): hdvips. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))) (./hyphenation.tex) (./extensions.tex) (./manual.aux) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./manual.out) (./manual.out) [1] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] (./manual.toc [3] [4] [5] [6] [7] [8]) [9] [10] [11] [12] Chapter 1. (./commandline.tex [13] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [14] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [15] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [16] [17] [18] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [19] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [20] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [21] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [22] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [23]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [24] [25] [26] Chapter 2. (./launching.tex [27] Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [28]) [29] [30] Chapter 3. (./simplecli.tex [31] [32] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [33] [34] Chapter 4. (./explorer.tex [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [40] [41] [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [49] [50]) [51] [52] Chapter 5. (./experimenter.tex [53] [54] Underfull \vbox (badness 1082) has occurred while \output is active [55] [56] [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] [61] [62] Underfull \vbox (badness 7704) has occurred while \output is active [63] [64] [65] Underfull \vbox (badness 10000) has occurred while \output is active [66] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [67] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [68] [69] Underfull \vbox (badness 10000) has occurred while \output is active [70] Underfull \vbox (badness 10000) has occurred while \output is active [71] [72] [73] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [74] [75] [76] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [77] Underfull \vbox (badness 10000) has occurred while \output is active [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [80] [81] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [82] Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [83] Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [84] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [85] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [86] [87] [88] Underfull \vbox (badness 10000) has occurred while \output is active [89] [90] [91] Underfull \vbox (badness 10000) has occurred while \output is active [92] ) [93] [94] Chapter 6. (./knowledgeflow.tex [95] [96] [97] [98] Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [99] [100] [101] [102] Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [103] [104] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [105] [106] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [107] [108] Chapter 7. (./arffviewer.tex [109] [110] [111] [112] ) [113] [114] Chapter 8. (./bayesnet.tex [115] [116] Underfull \vbox (badness 2103) has occurred while \output is active [117] Overfull \hbox (13.24905pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 331--336 [121] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [122] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 123 [123] Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [124] Underfull \vbox (badness 1867) has occurred while \output is active [125] [126] [127] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [128] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [129] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [130] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [131] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [132] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [133] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [134] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [135] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [136] [137] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [138] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [141] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [142] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [145] [146] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [147] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [148] [149] [150] [151] [152] [153] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [154] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [155] [156] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [157] [158] [159] [160] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [161] [162] Overfull \hbox (2.27603pt too wide) in paragraph at lines 110--111 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [163] [164] [165]) [166] Chapter 10. (./xrff.tex [167] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [168] [169] [170]) [171] [172] Chapter 11. (./converters.tex [173] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [174] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [175] [176] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [177] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [178] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [179] [180] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [181] [182] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [183] [184] Chapter 14. (./windows_databases.tex [185] [186]) [187] [188] [189] [190] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [191] (./includes/get_wekatechinfo.tex [192] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [193] [194] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [195] Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [196] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [197] Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [198] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [199] [200] Overfull \hbox (21.26906pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [201] Overfull \vbox (30.71523pt too high) has occurred while \output is active [202] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [203] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [204] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [205] Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [206] [207] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [208] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). [209] Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [210] [211] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation [212] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [213] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [214] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [215] Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [216] Overfull \vbox (81.61792pt too high) has occurred while \output is active [217] [218] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [219] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [220] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [221] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These [222] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [223] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [224] [225] Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [226] [227] Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [228] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [229] [230] [231] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [232] Chapter 17. (./extending.tex [233] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [234] Overfull \vbox (64.17354pt too high) has occurred while \output is active [235] [236] [237] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [238] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [239] [240] [241] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [242] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [243] Overfull \vbox (104.0pt too high) has occurred while \output is active [244] [245] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [246] (./extending_filter.tex Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [247] [248] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [249] (./includes/BatchFilter.tex) [250] (./includes/BatchFilter2.tex) [251] (./includes/BatchFilter3.tex) Overfull \vbox (69.04163pt too high) has occurred while \output is active [252] (./includes/StreamFilter.tex) [253] [254] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [255] [256] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [257] Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' [258] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [259] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [260] Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [261] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [262] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [263] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] [264] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [265] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [266] Overfull \vbox (91.59024pt too high) has occurred while \output is active [267] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [268] [269] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [270] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [271] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [272] Overfull \vbox (57.81944pt too high) has occurred while \output is active [273] Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [274] [275] )) [276] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [277] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-conne ctor-java-5.1.7-bin.jar [278] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [279] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent []\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 []\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.Mai n Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [280] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [281] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the []\O T1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [282] Overfull \vbox (24.59024pt too high) has occurred while \output is active [283] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the []\OT1/cmtt/m/n/10 \OT1/cmr/m/n/10 cor-re-spond s to a key in the []\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [284] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" weka .gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [285] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [288] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [289] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [290] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [291] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [292] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of []\OT1/cmtt/m/n/10 weka.experiment.Ex periment \OT1/cmr/m/n/10 and []\OT1/cmtt/m/n/10 weka.experiment.RemoteExperimen t Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([]\OT1/cmtt/m/n/10 weka.gui.graphvisual izer.GraphVisualizer\OT1/cmr/m/n/10 ) can save [293] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] ) [294] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [295] Underfull \hbox (badness 10000) in paragraph at lines 65--68 Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [296] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filenam e.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting []\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError \OT1 /cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [297] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 Underfull \hbox (badness 10000) in paragraph at lines 159--162 [298] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [299] Underfull \hbox (badness 10000) in paragraph at lines 257--258 Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [300] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [301] Overfull \vbox (45.33775pt too high) has occurred while \output is active [302] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [303] (./manual.aux) ) (see the transcript file for additional information) Output written on manual.dvi (303 pages, 965600 bytes). Transcript written on manual.log. touch debian/stamp-build-weka-doc /usr/bin/fakeroot debian/rules binary CDBS: parsing wekaexamples.zip ... test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 DEB_ANT_CHECK_TARGET unset, not running checks DEB_ANT_INSTALL_TARGET unset, skipping default ant.mk common-install target Adding cdbs dependencies to debian/weka.substvars dh_installdirs -pweka install -m644 -D dist/weka.jar debian/weka/usr/share/java/weka-3.6.12.jar dh_link -pweka /usr/share/java/weka-3.6.12.jar /usr/share/java/weka.jar Adding cdbs dependencies to debian/weka-doc.substvars dh_installdirs -pweka-doc #main overview page install -m755 -d debian/weka-doc/usr/share/doc/weka-doc install -m644 documentation.css documentation.html weka.gif -t debian/weka-doc/usr/share/doc/weka-doc/ #javadoc cp -r doc debian/weka-doc/usr/share/doc/weka-doc/ #pdf's install -m644 wekadocs/manual/manual.pdf debian/weka-doc/usr/share/doc/weka-doc/WekaManual.pdf touch debian/stamp-install-weka-doc dh_installdocs -pweka ./README dh_installexamples -pweka dh_installman -pweka dh_installinfo -pweka dh_installmenu -pweka dh_installcron -pweka dh_installinit -pweka dh_installdebconf -pweka dh_installemacsen -pweka dh_installcatalogs -pweka dh_installpam -pweka dh_installlogrotate -pweka dh_installlogcheck -pweka dh_installchangelogs -pweka dh_installudev -pweka dh_lintian -pweka dh_bugfiles -pweka dh_install -pweka dh_link -pweka dh_installmime -pweka dh_installgsettings -pweka dh_installdocs -pweka-doc ./README dh_installexamples -pweka-doc dh_installman -pweka-doc dh_installinfo -pweka-doc dh_installmenu -pweka-doc dh_installcron -pweka-doc dh_installinit -pweka-doc dh_installdebconf -pweka-doc dh_installemacsen -pweka-doc dh_installcatalogs -pweka-doc dh_installpam -pweka-doc dh_installlogrotate -pweka-doc dh_installlogcheck -pweka-doc dh_installchangelogs -pweka-doc dh_installudev -pweka-doc dh_lintian -pweka-doc dh_bugfiles -pweka-doc dh_install -pweka-doc dh_link -pweka-doc dh_installmime -pweka-doc dh_installgsettings -pweka-doc dh_strip -pweka dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: dh_strip debug symbol extraction: packages to act on: dh_strip debug symbol extraction: ignored packages: dh_compress -pweka -X .pdf dh_fixperms -pweka dh_makeshlibs -pweka dh_strip -pweka-doc dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: dh_strip debug symbol extraction: packages to act on: dh_strip debug symbol extraction: ignored packages: dh_compress -pweka-doc -X .pdf dh_fixperms -pweka-doc dh_makeshlibs -pweka-doc dh_installdeb -pweka dh_perl -pweka dh_shlibdeps -pweka dh_installdeb -pweka-doc dh_perl -pweka-doc dh_shlibdeps -pweka-doc dh_gencontrol -pweka dpkg-gencontrol: warning: Depends field of package weka: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pweka ; fi dh_md5sums -pweka dh_builddeb -pweka INFO: pkgstriptranslations version 121 pkgstriptranslations: processing weka (in debian/weka); do_strip: , oemstrip: debian/weka/usr/share/applications/weka.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/weka/DEBIAN/control, package weka, directory debian/weka pkgstripfiles: Truncating usr/share/doc/weka/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package weka took 0 s dpkg-deb: building package `weka' in `../weka_3.6.12-2_all.deb'. dh_gencontrol -pweka-doc dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pweka-doc ; fi dh_md5sums -pweka-doc dh_builddeb -pweka-doc INFO: pkgstriptranslations version 121 pkgstriptranslations: processing weka-doc (in debian/weka-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/weka-doc/DEBIAN/control, package weka-doc, directory debian/weka-doc pkgstripfiles: Truncating usr/share/doc/weka-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package weka-doc (to save build time) dpkg-deb: building package `weka-doc' in `../weka-doc_3.6.12-2_all.deb'. dpkg-genchanges -b -mUbuntu/amd64 Build Daemon >../weka_3.6.12-2_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build weka-3.6.12 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20150506-2325 chroot-autobuild/build/buildd/weka_3.6.12-2_all.deb: new debian package, version 2.0. size 7217750 bytes: control archive= 1890 bytes. 1173 bytes, 25 lines control 2316 bytes, 30 lines md5sums Package: weka Version: 3.6.12-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Java Maintainers Installed-Size: 8040 Depends: default-jre | java7-runtime | java6-runtime, java-wrappers, cup (>= 0.11a+20060608) Suggests: libsvm-java Section: science Priority: optional Homepage: http://www.cs.waikato.ac.nz/~ml/weka/ Description: Machine learning algorithms for data mining tasks Weka is a collection of machine learning algorithms in Java that can either be used from the command-line, or called from your own Java code. Weka is also ideally suited for developing new machine learning schemes. . Implemented schemes cover decision tree inducers, rule learners, model tree generators, support vector machines, locally weighted regression, instance-based learning, bagging, boosting, and stacking. Also included are clustering methods, and an association rule learner. Apart from actual learning schemes, Weka also contains a large variety of tools that can be used for pre-processing datasets. . This package contains the binaries and examples. chroot-autobuild/build/buildd/weka-doc_3.6.12-2_all.deb: new debian package, version 2.0. size 4766870 bytes: control archive= 45550 bytes. 1081 bytes, 25 lines control 144608 bytes, 1393 lines md5sums Package: weka-doc Source: weka Version: 3.6.12-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Java Maintainers Installed-Size: 41612 Recommends: weka Section: doc Priority: optional Homepage: http://www.cs.waikato.ac.nz/~ml/weka/ Description: Machine learning algorithms for data mining tasks Weka is a collection of machine learning algorithms in Java that can either be used from the command-line, or called from your own Java code. Weka is also ideally suited for developing new machine learning schemes. . Implemented schemes cover decision tree inducers, rule learners, model tree generators, support vector machines, locally weighted regression, instance-based learning, bagging, boosting, and stacking. Also included are clustering methods, and an association rule learner. Apart from actual learning schemes, Weka also contains a large variety of tools that can be used for pre-processing datasets. . This package contains the documentation. chroot-autobuild/build/buildd/weka_3.6.12-2_all.deb: drwxr-xr-x root/root 0 2015-05-06 23:25 ./ drwxr-xr-x root/root 0 2015-05-06 23:25 ./usr/ drwxr-xr-x root/root 0 2015-05-06 23:25 ./usr/share/ drwxr-xr-x root/root 0 2015-05-06 23:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-05-06 23:25 ./usr/share/doc/weka/ -rw-r--r-- root/root 1004 2015-05-06 23:25 ./usr/share/doc/weka/changelog.Debian.gz drwxr-xr-x root/root 0 2015-05-06 23:25 ./usr/share/doc/weka/examples/ -rw-r--r-- root/root 2890 2014-12-16 19:01 ./usr/share/doc/weka/examples/contact-lenses.arff -rw-r--r-- root/root 64173 2014-12-16 19:01 ./usr/share/doc/weka/examples/unbalanced.arff.gz -rw-r--r-- root/root 18220 2014-12-16 19:01 ./usr/share/doc/weka/examples/credit-g.arff.gz -rw-r--r-- root/root 183419 2014-12-16 19:01 ./usr/share/doc/weka/examples/ReutersCorn-test.arff.gz -rw-r--r-- root/root 183454 2014-12-16 19:01 ./usr/share/doc/weka/examples/ReutersGrain-test.arff.gz -rw-r--r-- 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Checksums-Sha1: ada3fc5eabbbc0a85fb8bac6b77e03c3093df3ff 7217750 weka_3.6.12-2_all.deb 1d4f9161a4d7aa1362aec71cb3b9f38b5dd6690f 4766870 weka-doc_3.6.12-2_all.deb Checksums-Sha256: fea3cb286eec683be66c5fdcdddd7c2c0b89574b20af47511d42dada42d6a2ca 7217750 weka_3.6.12-2_all.deb 5fae4057730451eb41ddfefee32ae499c78da5cc7e153785f8fc5947bf6cd87e 4766870 weka-doc_3.6.12-2_all.deb Files: 77b7f2e7ef809fc21ea521c55edb696c 7217750 science optional weka_3.6.12-2_all.deb 39919613f6c8c031090141df70566944 4766870 doc optional weka-doc_3.6.12-2_all.deb ****************************************************************************** Built successfully NOTE: The package could have used binaries from the following packages (access time changed) without a source dependency: tetex-bin: /usr/bin/dvips ****************************************************************************** Finished at 20150506-2325 Build needed 00:02:42, 247848k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7394603'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7394603/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7394603'] Unmounting chroot for build PACKAGEBUILD-7394603... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7394603'] Removing build PACKAGEBUILD-7394603