yanosim 0.1-3 source package in Ubuntu
Changelog
yanosim (0.1-3) unstable; urgency=medium
* Team upload.
* make sure python3-pysam is avaliable on all architectures to enable
testing migration
-- Andreas Tille <email address hidden> Mon, 27 Jul 2020 15:12:53 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| yanosim_0.1-3.dsc | 2.0 KiB | 28055d5b64a997fca72ae8b2e5a0dcf683936748b41bcf1f3e280445ac683035 |
| yanosim_0.1.orig.tar.gz | 7.8 KiB | cd6d732c3869f97bb0b69de13861a887e81b9c25d93c007ad9c8c4d6a29d462a |
| yanosim_0.1-3.debian.tar.xz | 3.0 KiB | 7b9299ae6a56b004c80414cfc1a703d57de127188d48ab702c81e3ebe68cc972 |
Available diffs
- diff from 0.1-2 to 0.1-3 (478 bytes)
No changes file available.
Binary packages built by this source
- yanosim: read simulator nanopore DRS datasets
Yanosim has three options:
.
1. yanosim model:
Creates an model of mismatches, insertions and deletions
based on an alignment of nanopore DRS reads to a
reference. Reads should be aligned to a transcriptome
i.e. without spliced alignment, using minimap2. They
should have the cs tag.
2. yanosim quantify:
Quantify the number of reads mapping to each
transcript in a reference, so that the right number
of reads can be simulated.
3. yanosim simulate:
Given a model created using yanosim model, and
per-transcript read counts created using yanosim
simulate, simulate error-prone long-reads from the
given fasta file.
