abacas binary package in Ubuntu Bionic amd64

 ABACAS is intended to rapidly contiguate (align, order, orientate),
 visualize and design primers to close gaps on shotgun assembled contigs
 based on a reference sequence.
 ABACAS uses MUMmer to find alignment positions and identify syntenies
 of assembled contigs against the reference. The output is then processed
 to generate a pseudomolecule taking overlapping contigs and gaps in to
 account. ABACAS generates a comparison file that can be used to
 visualize ordered and oriented contigs in ACT. Synteny is represented by
 red bars where colour intensity decreases with lower values of percent
 identity between comparable blocks. Information on contigs such as the
 orientation, percent identity, coverage and overlap with other contigs
 can also be visualized by loading the outputted feature file on ACT.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2017-11-01 13:55:20 UTC Published Ubuntu Bionic amd64 release universe science Optional 1.3.1-4
  • Published
  • Copied from ubuntu bionic-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Bionic amd64 proposed universe science Optional 1.3.1-4
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2017-11-01 14:25:38 UTC Superseded Ubuntu Bionic amd64 release universe science Optional 1.3.1-3
  • Removal requested .
  • Superseded by amd64 build of abacas 1.3.1-4 in ubuntu bionic PROPOSED
  • Published
  • Copied from ubuntu xenial-proposed amd64 in Primary Archive for Ubuntu

Source package