rna-star binary package in Ubuntu Focal amd64
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-03-23 01:53:20 UTC | Published | Ubuntu Focal amd64 | release | universe | science | Optional | 2.7.3a+dfsg-1build2 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.7.3a+dfsg-1build2 | |||
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2020-03-23 01:54:02 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.7.3a+dfsg-1build1 | ||
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2020-03-24 06:10:11 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.7.3a+dfsg-1build1 | ||
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2020-02-12 17:08:37 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.7.3a+dfsg-1 | ||
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2020-02-13 18:10:10 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.7.3a+dfsg-1 | ||
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2019-10-26 06:41:15 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.7.1a+dfsg-2 | ||
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