rna-star binary package in Ubuntu Focal amd64

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2020-03-23 01:53:20 UTC Published Ubuntu Focal amd64 release universe science Optional 2.7.3a+dfsg-1build2
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Focal amd64 proposed universe science Optional 2.7.3a+dfsg-1build2
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-03-23 01:54:02 UTC Superseded Ubuntu Focal amd64 release universe science Optional 2.7.3a+dfsg-1build1
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of rna-star 2.7.3a+dfsg-1build2 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu
  2020-03-24 06:10:11 UTC Deleted Ubuntu Focal amd64 proposed universe science Optional 2.7.3a+dfsg-1build1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-02-12 17:08:37 UTC Superseded Ubuntu Focal amd64 release universe science Optional 2.7.3a+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of rna-star 2.7.3a+dfsg-1build1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu
  2020-02-13 18:10:10 UTC Deleted Ubuntu Focal amd64 proposed universe science Optional 2.7.3a+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2019-10-26 06:41:15 UTC Superseded Ubuntu Focal amd64 release universe science Optional 2.7.1a+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of rna-star 2.7.3a+dfsg-1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu eoan-proposed amd64 in Primary Archive for Ubuntu