r-bioc-qusage binary package in Ubuntu Hirsute amd64

 This package is an implementation the Quantitative Set
 Analysis for Gene Expression (QuSAGE) method described in
 (Yaari G. et al, Nucl Acids Res, 2013). This is a novel Gene
 Set Enrichment-type test, which is designed to provide a
 faster, more accurate, and easier to understand test for gene
 expression studies. qusage accounts for inter-gene correlations
 using the Variance Inflation Factor technique proposed by Wu et
 al. (Nucleic Acids Res, 2012). In addition, rather than simply
 evaluating the deviation from a null hypothesis with a single
 number (a P value), qusage quantifies gene set activity with a
 complete probability density function (PDF). From this PDF, P
 values and confidence intervals can be easily extracted.
 Preserving the PDF also allows for post-hoc analysis (e.g.,
 pair-wise comparisons of gene set activity) while maintaining
 statistical traceability. Finally, while qusage is compatible
 with individual gene statistics from existing methods (e.g.,
 LIMMA), a Welch-based method is implemented that is shown to
 improve specificity. For questions, contact Chris Bolen
 (cbolen1@gmail.com) or Steven Kleinstein

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2021-03-01 01:28:20 UTC Published Ubuntu Hirsute amd64 release universe gnu-r Optional 2.24.0-1
  • Published on 2021-03-01
  • Copied from ubuntu hirsute-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Hirsute amd64 proposed universe gnu-r Optional 2.24.0-1
  • Removal requested on 2021-03-01.
  • Deleted on 2021-03-01 by Ubuntu Archive Robot

    moved to Release

  • Published on 2020-11-02
  2021-03-01 01:29:02 UTC Superseded Ubuntu Hirsute amd64 release universe gnu-r Optional 2.22.0-1build1
  • Removal requested on 2021-03-02.
  • Superseded on 2021-03-01 by amd64 build of r-bioc-qusage 2.24.0-1 in ubuntu hirsute PROPOSED
  • Published on 2020-10-23
  • Copied from ubuntu groovy-proposed amd64 in Primary Archive for Ubuntu