Binary package “libbio-db-gff-perl” in ubuntu kinetic
Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database.
It supports multiple database types (ACeDB, relational), and multiple schemas
through a system of adaptors and aggregators.
.
The following operations are supported by this module:
.
- retrieving a segment of sequence based on the ID of a landmark
.
- retrieving the DNA from that segment
.
- finding all annotations that overlap with the segment
.
- finding all annotations that are completely contained within the
segment
.
- retrieving all annotations of a particular type, either within a
segment, or globally
.
- conversion from absolute to relative coordinates and back again,
using any arbitrary landmark for the relative coordinates
.
- using a sequence segment to create new segments based on relative
offsets
Source package
Published versions
- libbio-db-gff-perl 1.7.4-1 in amd64 (Release)
- libbio-db-gff-perl 1.7.4-1 in arm64 (Release)
- libbio-db-gff-perl 1.7.4-1 in armhf (Release)
- libbio-db-gff-perl 1.7.4-1 in i386 (Release)
- libbio-db-gff-perl 1.7.4-1 in ppc64el (Release)
- libbio-db-gff-perl 1.7.4-1 in riscv64 (Release)
- libbio-db-gff-perl 1.7.4-1 in s390x (Release)