libbio-db-gff-perl 1.7.4-1 (riscv64 binary) in ubuntu kinetic
Bio::DB::GFF provides fast indexed access to a sequence annotation database.
It supports multiple database types (ACeDB, relational), and multiple schemas
through a system of adaptors and aggregators.
.
The following operations are supported by this module:
.
- retrieving a segment of sequence based on the ID of a landmark
.
- retrieving the DNA from that segment
.
- finding all annotations that overlap with the segment
.
- finding all annotations that are completely contained within the
segment
.
- retrieving all annotations of a particular type, either within a
segment, or globally
.
- conversion from absolute to relative coordinates and back again,
using any arbitrary landmark for the relative coordinates
.
- using a sequence segment to create new segments based on relative
offsets
Details
- Package version:
- 1.7.4-1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
- libbio-db-gff-perl_1.7.4-1_all.deb (266.5 KiB)
Package relationships
- Replaces:
- Breaks: