Binary package “amap-align” in ubuntu trusty

Protein multiple alignment by sequence annealing

 AMAP is a command line tool to perform multiple alignment of peptidic
 sequences. It utilizes posterior decoding, and a sequence-annealing
 alignment, instead of the traditional progressive alignment method. It is
 the only alignment program that allows one to control the sensitivity /
 specificity tradeoff. It is based on the ProbCons source code, but
 uses alignment metric accuracy and eliminates the consistency
 The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.