glam2 1064-1 (i386 binary) in ubuntu trusty

 GLAM2 is a software package for finding motifs in sequences, typically
 amino-acid or nucleotide sequences. A motif is a re-occurring sequence
 pattern: typical examples are the TATA box and the CAAX prenylation motif. The
 main innovation of GLAM2 is that it allows insertions and deletions in motifs.
 .
 The package includes these programs:
  glam2: discovering motifs shared by a set of sequences;
  glam2scan: finding matches, in a sequence database, to a motif discovered
               by glam2;
  glam2format: converting glam2 motifs to standard alignment formats;
  glam2mask: masking glam2 motifs out of sequences, so that weaker motifs
               can be found;
  glam2-purge: removing highly similar members of a set of sequences.
 .
 In this package, the fast Fourier algorithm (FFT) was enabled for glam2.
 .
 If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey
 (2008) Discovering sequence motifs with arbitrary insertions and deletions,
 PLoS Computational Biology (in press).

Details

Package version:
1064-1
Source:
glam2 1064-1 source package in Ubuntu
Status:
Superseded
Component:
universe
Priority:
Optional

Downloadable files

Package relationships