high-throughput genome sequencing read analysis utilities

 HTSeq can be used to performing a number of common analysis tasks
 when working with high-throughput genome sequencing reads:
 .
   * Getting statistical summaries about the base-call quality scores to
     study the data quality.
   * Calculating a coverage vector and exporting it for visualization in
     a genome browser.
   * Reading in annotation data from a GFF file.
   * Assigning aligned reads from an RNA-Seq experiments to exons and
     genes.