diff -Nru fastml-3.1/debian/changelog fastml-3.1/debian/changelog --- fastml-3.1/debian/changelog 2014-04-08 10:35:53.000000000 +0000 +++ fastml-3.1/debian/changelog 2014-04-23 13:01:55.000000000 +0000 @@ -1,4 +1,11 @@ -fastml (3.1-1) saucy; urgency=low +fastml (3.1-2) saucy; urgency=medium + + * Proper Debian package. + * Incorporates some of AndrewJPage's source-level fixes. + + -- Aidan Delaney Wed, 23 Apr 2014 13:16:49 +0100 + +fastml (3.1-1) unstable; urgency=low * Initial package diff -Nru fastml-3.1/debian/compat fastml-3.1/debian/compat --- fastml-3.1/debian/compat 2014-04-08 10:35:53.000000000 +0000 +++ fastml-3.1/debian/compat 2014-04-23 13:01:55.000000000 +0000 @@ -1 +1 @@ -8 +9 Binary files /tmp/7LcvlBAwH2/fastml-3.1/debian/usr/bin/fastml and /tmp/UPoui8iYOd/fastml-3.1/debian/usr/bin/fastml differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/checkTreeLikelihoodGivenBranches and /tmp/UPoui8iYOd/fastml-3.1/libs/phylogeny/tests/checkTreeLikelihoodGivenBranches differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/computeNJtreeJCmodel and /tmp/UPoui8iYOd/fastml-3.1/libs/phylogeny/tests/computeNJtreeJCmodel differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/doubleRep and /tmp/UPoui8iYOd/fastml-3.1/libs/phylogeny/tests/doubleRep differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/given2seqEstimateTheDistanceK2P and /tmp/UPoui8iYOd/fastml-3.1/libs/phylogeny/tests/given2seqEstimateTheDistanceK2P differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/given2seqEstimateTheDistBetweenThem and /tmp/UPoui8iYOd/fastml-3.1/libs/phylogeny/tests/given2seqEstimateTheDistBetweenThem differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/given2seqEstimateTheDistBetweenThemGamma and /tmp/UPoui8iYOd/fastml-3.1/libs/phylogeny/tests/given2seqEstimateTheDistBetweenThemGamma differ Binary files /tmp/7LcvlBAwH2/fastml-3.1/libs/phylogeny/tests/given2seqTheDistBetweenThem-3 and 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fastml-3.1/programs/Makefile fastml-3.1/programs/Makefile --- fastml-3.1/programs/Makefile 2014-04-08 10:35:53.000000000 +0000 +++ fastml-3.1/programs/Makefile 2014-04-23 13:01:55.000000000 +0000 @@ -3,9 +3,11 @@ # this split is vital becouse of a bug in make 3.80.1 - see # http://www.cygwin.com/ml/cygwin/2004-09/msg01659.html -PROGRAMS1= fastml gainLoss -PROGRAMS2= indelCoder -PROGRAMS = $(PROGRAMS1) $(PROGRAMS2) +PROGRAMS1= fastml +# Do not build gainLoss or indelCoder +#gainLoss +#PROGRAMS2= indelCoder +PROGRAMS = $(PROGRAMS1) # all has to be the FIRST task! TASKS= all clean depend debug All install doubleRep