RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '242d0a0777bd8c69f392212d11bd8447d6eb8728', '/home/buildd/filecache-default/7f84715a2487c0e25be20d612e2809c2352ed2ef'] Uncompressing the tarball... Synching the system clock with the buildd NTP service... 10 Dec 11:27:19 ntpdate[3428]: step time server 10.211.37.1 offset -1046720.350889 sec Unpacking chroot for build 242d0a0777bd8c69f392212d11bd8447d6eb8728 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '242d0a0777bd8c69f392212d11bd8447d6eb8728'] Mounting chroot for build 242d0a0777bd8c69f392212d11bd8447d6eb8728 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '242d0a0777bd8c69f392212d11bd8447d6eb8728', 'deb http://ppa.launchpad.net/genomeinformatics/bioinformatics-software/ubuntu oneiric main', 'deb http://ftpmaster.internal/ubuntu oneiric main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu oneiric-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu oneiric-updates main restricted universe multiverse'] Overriding sources.list in build-242d0a0777bd8c69f392212d11bd8447d6eb8728 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '242d0a0777bd8c69f392212d11bd8447d6eb8728', 'i386'] Updating debian chroot for build 242d0a0777bd8c69f392212d11bd8447d6eb8728 Ign http://ftpmaster.internal oneiric InRelease Ign http://ftpmaster.internal oneiric-security InRelease Ign http://ppa.launchpad.net oneiric InRelease Ign http://ftpmaster.internal oneiric-updates InRelease Get:1 http://ftpmaster.internal oneiric Release.gpg [198 B] Get:2 http://ftpmaster.internal oneiric-security Release.gpg [198 B] Get:3 http://ftpmaster.internal oneiric-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal oneiric Release [40.8 kB] Get:5 http://ftpmaster.internal oneiric-security Release [32.4 kB] Get:6 http://ftpmaster.internal oneiric-updates Release [32.4 kB] Get:7 http://ppa.launchpad.net oneiric Release.gpg [316 B] Get:8 http://ftpmaster.internal oneiric/main i386 Packages [1226 kB] Get:9 http://ppa.launchpad.net oneiric Release [9779 B] Ign http://ppa.launchpad.net oneiric Release Get:10 http://ppa.launchpad.net oneiric/main i386 Packages [1110 B] Ign http://ppa.launchpad.net oneiric/main TranslationIndex Ign http://ppa.launchpad.net oneiric/main Translation-en Get:11 http://ftpmaster.internal oneiric/restricted i386 Packages [8216 B] Get:12 http://ftpmaster.internal oneiric/universe i386 Packages [4468 kB] Get:13 http://ftpmaster.internal oneiric/multiverse i386 Packages [119 kB] Get:14 http://ftpmaster.internal oneiric/main TranslationIndex [3289 B] Get:15 http://ftpmaster.internal oneiric/multiverse TranslationIndex [2265 B] Get:16 http://ftpmaster.internal oneiric/restricted TranslationIndex [2263 B] Get:17 http://ftpmaster.internal oneiric/universe TranslationIndex [2640 B] Get:18 http://ftpmaster.internal oneiric-security/main i386 Packages [46.0 kB] Get:19 http://ftpmaster.internal oneiric-security/restricted i386 Packages [14 B] Get:20 http://ftpmaster.internal oneiric-security/universe i386 Packages [14.1 kB] Get:21 http://ftpmaster.internal oneiric-security/multiverse i386 Packages [1653 B] Get:22 http://ftpmaster.internal oneiric-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal oneiric-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal oneiric-security/restricted TranslationIndex [70 B] Get:25 http://ftpmaster.internal oneiric-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal oneiric-updates/main i386 Packages [205 kB] Get:27 http://ftpmaster.internal oneiric-updates/restricted i386 Packages [2935 B] Get:28 http://ftpmaster.internal oneiric-updates/universe i386 Packages [56.2 kB] Get:29 http://ftpmaster.internal oneiric-updates/multiverse i386 Packages [4396 B] Get:30 http://ftpmaster.internal oneiric-updates/main TranslationIndex [73 B] Get:31 http://ftpmaster.internal oneiric-updates/multiverse TranslationIndex [72 B] Get:32 http://ftpmaster.internal oneiric-updates/restricted TranslationIndex [71 B] Get:33 http://ftpmaster.internal oneiric-updates/universe TranslationIndex [73 B] Get:34 http://ftpmaster.internal oneiric/main Translation-en [701 kB] Get:35 http://ftpmaster.internal oneiric/multiverse Translation-en [92.6 kB] Get:36 http://ftpmaster.internal oneiric/restricted Translation-en [2229 B] Get:37 http://ftpmaster.internal oneiric/universe Translation-en [3165 kB] Get:38 http://ftpmaster.internal oneiric-security/main Translation-en [25.9 kB] Get:39 http://ftpmaster.internal oneiric-security/multiverse Translation-en [840 B] Get:40 http://ftpmaster.internal oneiric-security/restricted Translation-en [14 B] Get:41 http://ftpmaster.internal oneiric-security/universe Translation-en [10.0 kB] Get:42 http://ftpmaster.internal oneiric-updates/main Translation-en [95.6 kB] Get:43 http://ftpmaster.internal oneiric-updates/multiverse Translation-en [2419 B] Get:44 http://ftpmaster.internal oneiric-updates/restricted Translation-en [508 B] Get:45 http://ftpmaster.internal oneiric-updates/universe Translation-en [34.7 kB] Fetched 10.4 MB in 7s (1339 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net oneiric Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 4CD7AA60FCDFFF54 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils initramfs-tools initramfs-tools-bin libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libpam-modules libpam-modules-bin libpam-runtime libpam0g linux-libc-dev tzdata upstart 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5196 kB of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpam0g libpam-modules-bin libpam-modules libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 libpam-runtime tzdata initramfs-tools initramfs-tools-bin upstart binutils linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric-security/main libpam0g i386 1.1.3-2ubuntu2.1 [56.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric-security/main libpam-modules-bin i386 1.1.3-2ubuntu2.1 [41.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric-security/main libpam-modules i386 1.1.3-2ubuntu2.1 [270 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric-updates/main libk5crypto3 i386 1.9.1+dfsg-1ubuntu2.1 [81.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric-updates/main libgssapi-krb5-2 i386 1.9.1+dfsg-1ubuntu2.1 [120 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric-updates/main libkrb5-3 i386 1.9.1+dfsg-1ubuntu2.1 [362 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric-updates/main libkrb5support0 i386 1.9.1+dfsg-1ubuntu2.1 [24.1 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric-security/main libldap-2.4-2 i386 2.4.25-1.1ubuntu4.1 [184 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric-security/main libpam-runtime i386 1.1.3-2ubuntu2.1 [45.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric-updates/main tzdata i386 2011n-0ubuntu0.11.10 [465 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric-updates/main initramfs-tools all 0.99ubuntu8 [51.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric-updates/main initramfs-tools-bin i386 0.99ubuntu8 [11.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric-updates/main upstart i386 1.3-0ubuntu11 [289 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric-updates/main binutils i386 2.21.53.20110810-0ubuntu5 [2383 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric-security/main linux-libc-dev i386 3.0.0-13.22 [812 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5196 kB in 0s (14.3 MB/s) (Reading database ... 14112 files and directories currently installed.) Preparing to replace libpam0g 1.1.3-2ubuntu1 (using .../libpam0g_1.1.3-2ubuntu2.1_i386.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.3-2ubuntu2.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14112 files and directories currently installed.) Preparing to replace libpam-modules-bin 1.1.3-2ubuntu1 (using .../libpam-modules-bin_1.1.3-2ubuntu2.1_i386.deb) ... Unpacking replacement libpam-modules-bin ... Setting up libpam-modules-bin (1.1.3-2ubuntu2.1) ... (Reading database ... 14112 files and directories currently installed.) Preparing to replace libpam-modules 1.1.3-2ubuntu1 (using .../libpam-modules_1.1.3-2ubuntu2.1_i386.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.3-2ubuntu2.1) ... (Reading database ... 14112 files and directories currently installed.) Preparing to replace libk5crypto3 1.9.1+dfsg-1ubuntu1 (using .../libk5crypto3_1.9.1+dfsg-1ubuntu2.1_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.9.1+dfsg-1ubuntu1 (using .../libgssapi-krb5-2_1.9.1+dfsg-1ubuntu2.1_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.9.1+dfsg-1ubuntu1 (using .../libkrb5-3_1.9.1+dfsg-1ubuntu2.1_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.9.1+dfsg-1ubuntu1 (using .../libkrb5support0_1.9.1+dfsg-1ubuntu2.1_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libldap-2.4-2 2.4.25-1.1ubuntu4 (using .../libldap-2.4-2_2.4.25-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace libpam-runtime 1.1.3-2ubuntu1 (using .../libpam-runtime_1.1.3-2ubuntu2.1_i386.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-2ubuntu2.1) ... (Reading database ... 14112 files and directories currently installed.) Preparing to replace tzdata 2011k-1 (using .../tzdata_2011n-0ubuntu0.11.10_i386.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2011n-0ubuntu0.11.10) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 28 08:43:07 UTC 2011. Universal Time is now: Mon Nov 28 08:43:07 UTC 2011. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 14112 files and directories currently installed.) Preparing to replace initramfs-tools 0.99ubuntu7 (using .../initramfs-tools_0.99ubuntu8_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.99ubuntu7 (using .../initramfs-tools-bin_0.99ubuntu8_i386.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace upstart 1.3-0ubuntu10 (using .../upstart_1.3-0ubuntu11_i386.deb) ... Unpacking replacement upstart ... Preparing to replace binutils 2.21.53.20110810-0ubuntu3 (using .../binutils_2.21.53.20110810-0ubuntu5_i386.deb) ... Unpacking replacement binutils ... Preparing to replace linux-libc-dev 3.0.0-12.20 (using .../linux-libc-dev_3.0.0-13.22_i386.deb) ... Unpacking replacement linux-libc-dev ... Setting up libkrb5support0 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libk5crypto3 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libkrb5-3 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libgssapi-krb5-2 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libldap-2.4-2 (2.4.25-1.1ubuntu4.1) ... Setting up initramfs-tools-bin (0.99ubuntu8) ... Setting up initramfs-tools (0.99ubuntu8) ... update-initramfs: deferring update (trigger activated) Setting up upstart (1.3-0ubuntu11) ... Installing new version of config file /etc/init/failsafe.conf ... Setting up binutils (2.21.53.20110810-0ubuntu5) ... Setting up linux-libc-dev (3.0.0-13.22) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '242d0a0777bd8c69f392212d11bd8447d6eb8728', 'i386', 'oneiric', '--nolog', '--batch', '--archive=ubuntu', '--dist=oneiric', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'mosdi_1.2-2.dsc'] Initiating build 242d0a0777bd8c69f392212d11bd8447d6eb8728 with 2 processor cores. Automatic build of mosdi_1.2-2 on samarium by sbuild/i386 1.170.5 Build started at 20111128-0843 ****************************************************************************** mosdi_1.2-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils file gettext gettext-base groff-base html2text intltool-debian libcroco3 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file gettext gettext-base groff-base html2text intltool-debian libcroco3 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 5440 kB of archives. After this operation, 18.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libmagic1 file bsdmainutils gettext-base groff-base libxml2 man-db html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main libpipeline1 i386 1.2.0-3 [25.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libmagic1 i386 5.04-5ubuntu3 [205 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main file i386 5.04-5ubuntu3 [19.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main bsdmainutils i386 8.2.3 [196 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main gettext-base i386 0.18.1.1-3ubuntu1 [56.6 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main groff-base i386 1.21-6 [1024 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2 i386 2.7.8.dfsg-4 [662 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main man-db i386 2.6.0.2-2 [717 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main html2text i386 1.3.2a-15 [101 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libcroco3 i386 0.6.2-1 [92.5 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libunistring0 i386 0.9.3-4 [431 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main gettext i386 0.18.1.1-3ubuntu1 [1180 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main po-debconf all 1.0.16+nmu1 [212 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main debhelper all 8.9.0ubuntu1 [487 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5440 kB in 0s (14.5 MB/s) Selecting previously deselected package libpipeline1. (Reading database ... 14112 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_i386.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu3_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.04-5ubuntu3_i386.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_i386.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-3ubuntu1_i386.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_i386.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_i386.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_i386.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-3ubuntu1_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.0ubuntu1_all.deb) ... Setting up libpipeline1 (1.2.0-3) ... Setting up libmagic1 (5.04-5ubuntu3) ... Setting up file (5.04-5ubuntu3) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-6) ... Setting up libxml2 (2.7.8.dfsg-4) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.0ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu5 make_3.81-8.1ubuntu1 dpkg-dev_1.16.0.3ubuntu5 gcc-4.6_4.6.1-9ubuntu3 g++-4.6_4.6.1-9ubuntu3 binutils_2.21.53.20110810-0ubuntu5 libstdc++6-4.6-dev_4.6.1-9ubuntu3 libstdc++6_4.6.1-9ubuntu3 ------------------------------------------------------------------------------ gpgv: Signature made Mon Nov 28 08:16:53 2011 UTC using RSA key ID 7107D536 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mosdi_1.2-2.dsc dpkg-source: info: extracting mosdi in mosdi-1.2 dpkg-source: info: unpacking mosdi_1.2.orig.tar.gz dpkg-source: info: applying mosdi_1.2-2.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 dpkg-buildpackage: source package mosdi dpkg-buildpackage: source version 1.2-2 dpkg-source --before-build mosdi-1.2 dpkg-buildpackage: host architecture i386 parsechangelog/debian: warning: mosdi-1.2/debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build dh_auto_test /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/mosdi-1.2' dh_auto_install mkdir -p /build/buildd/mosdi-1.2/debian/mosdi/usr/share/java/ mkdir -p /build/buildd/mosdi-1.2/debian/mosdi/usr/bin cp /build/buildd/mosdi-1.2/mosdi-1.2.jar /build/buildd/mosdi-1.2/debian/mosdi/usr/share/java/mosdi-1.2.jar chmod 644 /build/buildd/mosdi-1.2/debian/mosdi/usr/share/java/mosdi-1.2.jar echo "#!/bin/bash" > /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-stat; echo "java \$MOSDI_JVM_ARGS -classpath /usr/share/java/mosdi-1.2.jar mosdi.tools.Stat \$@" >> /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-stat; chmod 755 /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-stat; echo "#!/bin/bash" > /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-discovery; echo "java \$MOSDI_JVM_ARGS -classpath /usr/share/java/mosdi-1.2.jar mosdi.tools.Discovery \$@" >> /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-discovery; chmod 755 /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-discovery; echo "#!/bin/bash" > /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-pm-analysis; echo "java \$MOSDI_JVM_ARGS -classpath /usr/share/java/mosdi-1.2.jar mosdi.tools.PatternMatchingAnalysis \$@" >> /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-pm-analysis; chmod 755 /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-pm-analysis; echo "#!/bin/bash" > /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-utils; echo "java \$MOSDI_JVM_ARGS -classpath /usr/share/java/mosdi-1.2.jar mosdi.tools.Utils \$@" >> /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-utils; chmod 755 /build/buildd/mosdi-1.2/debian/mosdi/usr/bin/mosdi-utils; #/build/buildd/mosdi-1.2/install.sh /build/buildd/mosdi-1.2/debian/mosdi/usr # this has a problem with the prefix used during package building. make[1]: Leaving directory `/build/buildd/mosdi-1.2' dh_install dh_installdocs dh_installchangelogs parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link dh_compress dh_fixperms dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 dpkg-gencontrol: warning: Depends field of package mosdi: unknown substitution variable ${shlibs:Depends} dh_md5sums dh_builddeb parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 INFO: pkgstriptranslations version 104 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 INFO: Disabling pkgstriptranslations for PPA build parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 INFO: Disabling pkgmaintainermangler for PPA build parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `mosdi' in `../mosdi_1.2-2_all.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../mosdi_1.2-2_i386.changes parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 parsechangelog/debian: warning: debian/changelog(l11): badly formatted trailer line LINE: -- Johannes Koester Tue, 08 Nov 2011 11:02:58 +0100 dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mosdi-1.2 parsechangelog/debian: warning: mosdi-1.2/debian/changelog(l5): badly formatted trailer line LINE: -- Johannes Koester Mon, 28 Nov 2011 09:16:58 +0100 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111128-0846 chroot-autobuild/build/buildd/mosdi_1.2-2_all.deb: new debian package, version 2.0. size 382828 bytes: control archive= 603 bytes. 322 bytes, 10 lines control 362 bytes, 6 lines md5sums Package: mosdi Version: 1.2-2 Architecture: all Maintainer: Johannes Koester Installed-Size: 460 Depends: java-runtime Section: science Priority: optional Homepage: http://code.google.com/p/mosdi/ Description: Motif Statistics and Discovery - Sequence analysis toolkit for bioinformatics chroot-autobuild/build/buildd/mosdi_1.2-2_all.deb: drwxr-xr-x root/root 0 2011-11-28 08:46 ./ drwxr-xr-x root/root 0 2011-11-28 08:46 ./usr/ drwxr-xr-x root/root 0 2011-11-28 08:46 ./usr/bin/ -rwxr-xr-x root/root 94 2011-11-28 08:46 ./usr/bin/mosdi-stat -rwxr-xr-x root/root 95 2011-11-28 08:46 ./usr/bin/mosdi-utils -rwxr-xr-x root/root 113 2011-11-28 08:46 ./usr/bin/mosdi-pm-analysis -rwxr-xr-x root/root 99 2011-11-28 08:46 ./usr/bin/mosdi-discovery drwxr-xr-x root/root 0 2011-11-28 08:46 ./usr/share/ drwxr-xr-x root/root 0 2011-11-28 08:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-11-28 08:46 ./usr/share/doc/mosdi/ -rw-r--r-- root/root 221 2011-11-28 08:46 ./usr/share/doc/mosdi/changelog.Debian.gz drwxr-xr-x root/root 0 2011-11-28 08:46 ./usr/share/java/ -rw-r--r-- root/root 412318 2011-11-28 08:46 ./usr/share/java/mosdi-1.2.jar mosdi_1.2-2_i386.changes: Format: 1.8 Date: Mon, 28 Nov 2011 09:16:58 +0100 Source: mosdi Binary: mosdi Architecture: all Version: 1.2-2 Distribution: oneiric Urgency: high Maintainer: Ubuntu/i386 Build Daemon Changed-By: Johannes Koester Description: mosdi - Motif Statistics and Discovery - Sequence analysis toolkit for bi Changes: mosdi (1.2-2) oneiric; urgency=high . * Fixed paths in scripts by porting installation script into rules makefile. Checksums-Sha1: a174c2fdd605aa8f38f64e99e474dc7d0ca1a641 382828 mosdi_1.2-2_all.deb Checksums-Sha256: a1fe9f8d618a0694a2089e61811f5ae61a691c073e9981dcd22d1f3d9d45cbbc 382828 mosdi_1.2-2_all.deb Files: 93bcb4f5cbfb3bdad83ec289c741254b 382828 science optional mosdi_1.2-2_all.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mosdi-1.2 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge po-debconf libunistring0 intltool-debian groff-base libcroco3 libmagic1 gettext file libpipeline1 libxml2 bsdmainutils html2text gettext-base man-db debhelper (Reading database ... 15254 files and directories currently installed.) Removing debhelper ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing file ... Removing html2text ... Purging configuration files for html2text ... Removing gettext-base ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing groff-base ... Purging configuration files for groff-base ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111128-0846 Build needed 00:00:06, 1336k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '242d0a0777bd8c69f392212d11bd8447d6eb8728'] Scanning for processes to kill in build /home/buildd/build-242d0a0777bd8c69f392212d11bd8447d6eb8728/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '242d0a0777bd8c69f392212d11bd8447d6eb8728'] Unmounting chroot for build 242d0a0777bd8c69f392212d11bd8447d6eb8728... none /home/buildd/build-242d0a0777bd8c69f392212d11bd8447d6eb8728/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-242d0a0777bd8c69f392212d11bd8447d6eb8728/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-242d0a0777bd8c69f392212d11bd8447d6eb8728/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-242d0a0777bd8c69f392212d11bd8447d6eb8728/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '242d0a0777bd8c69f392212d11bd8447d6eb8728'] Removing build 242d0a0777bd8c69f392212d11bd8447d6eb8728