RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 6 Oct 19:19:26 ntpdate[3401]: step time server 10.211.37.1 offset -1074903.700783 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3'] Mounting chroot for build d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3', 'deb http://ppa.launchpad.net/genomeinformatics/bioinformatics-software/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3', 'i386'] Updating debian chroot for build d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3 Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Ign http://ppa.launchpad.net precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ppa.launchpad.net precise Release.gpg [316 B] Get:4 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:5 http://ftpmaster.internal precise Release [49.6 kB] Get:6 http://ppa.launchpad.net precise Release [11.9 kB] Get:7 http://ftpmaster.internal precise-security Release [49.6 kB] Get:8 http://ftpmaster.internal precise-updates Release [49.6 kB] Ign http://ppa.launchpad.net precise Release Get:9 http://ppa.launchpad.net precise/main i386 Packages [382 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Get:10 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Ign http://ppa.launchpad.net precise/main Translation-en Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [169 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [44.6 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [394 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [133 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9673 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [78.8 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [27.7 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [192 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [79.3 kB] Fetched 11.7 MB in 6s (1719 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 4CD7AA60FCDFFF54 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files build-essential gnupg gpgv initscripts libapt-pkg4.12 libdbus-1-3 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 33 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB of archives. After this operation, 29.7 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 gpgv gnupg apt libssl1.0.0 libsqlite3-0 libdbus-1-3 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev openssl apt-transport-https build-essential linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main gpgv i386 1.4.11-3ubuntu2.1 [179 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main gnupg i386 1.4.11-3ubuntu2.1 [789 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libssl1.0.0 i386 1.0.1-4ubuntu5.5 [1003 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-security/main libdbus-1-3 i386 1.4.18-1ubuntu1.1 [148 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-security/main tzdata all 2012e-0ubuntu0.12.04.1 [474 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise-updates/main openssl i386 1.0.1-4ubuntu5.5 [519 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise-updates/main build-essential i386 11.5ubuntu2.1 [5796 B] Get:33 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-31.50 [866 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.3 MB in 1s (13.9 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace gpgv 1.4.11-3ubuntu2 (using .../gpgv_1.4.11-3ubuntu2.1_i386.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.11-3ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace gnupg 1.4.11-3ubuntu2 (using .../gnupg_1.4.11-3ubuntu2.1_i386.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.11-3ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.5_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libdbus-1-3 1.4.18-1ubuntu1 (using .../libdbus-1-3_1.4.18-1ubuntu1.1_i386.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04.1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04.1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 24 08:46:48 UTC 2012. Universal Time is now: Mon Sep 24 08:46:48 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.5_i386.deb) ... Unpacking replacement openssl ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace build-essential 11.5ubuntu2 (using .../build-essential_11.5ubuntu2.1_i386.deb) ... Unpacking replacement build-essential ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-31.50_i386.deb) ... Unpacking replacement linux-libc-dev ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libdbus-1-3 (1.4.18-1ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up openssl (1.0.1-4ubuntu5.5) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up build-essential (11.5ubuntu2.1) ... Setting up linux-libc-dev (3.2.0-31.50) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'python3-snakemake_1.2.3.dsc'] Initiating build d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3 with 2 jobs across 2 processor cores. Automatic build of python3-snakemake_1.2.3 on nannyberry by sbuild/i386 1.170.5 Build started at 20120924-0846 ****************************************************************************** python3-snakemake_1.2.3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8.9) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB of archives. After this operation, 17.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:17 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5687 kB in 0s (14.1 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 12283 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ gpgv: Signature made Mon Sep 24 08:39:01 2012 UTC using RSA key ID F9AED7BA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./python3-snakemake_1.2.3.dsc dpkg-source: info: extracting python3-snakemake in python3-snakemake-1.2.3 dpkg-source: info: unpacking python3-snakemake_1.2.3.tar.gz dpkg-buildpackage: source package python3-snakemake dpkg-buildpackage: source version 1.2.3 dpkg-source --before-build python3-snakemake-1.2.3 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean Can't exec "pyversions": No such file or directory at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 120. Use of uninitialized value $python_default in substitution (s///) at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 121. Use of uninitialized value $python_default in substitution (s///) at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 122. dh_clean debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build Can't exec "pyversions": No such file or directory at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 120. Use of uninitialized value $python_default in substitution (s///) at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 121. Use of uninitialized value $python_default in substitution (s///) at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 122. dh_auto_test /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install Can't exec "pyversions": No such file or directory at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 120. Use of uninitialized value $python_default in substitution (s///) at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 121. Use of uninitialized value $python_default in substitution (s///) at /usr/share/perl5/Debian/Debhelper/Buildsystem/python_distutils.pm line 122. dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link dh_compress dh_fixperms dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `python3-snakemake' in `../python3-snakemake_1.2.3_all.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../python3-snakemake_1.2.3_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build python3-snakemake-1.2.3 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120924-0847 chroot-autobuild/build/buildd/python3-snakemake_1.2.3_all.deb: new debian package, version 2.0. size 23310 bytes: control archive= 762 bytes. 290 bytes, 9 lines control 971 bytes, 12 lines md5sums Package: python3-snakemake Version: 1.2.3 Architecture: all Maintainer: Johannes Koester Installed-Size: 124 Depends: python3 (>= 3.2) Section: science Priority: extra Description: A Python based language and execution environment for make-like workflows. chroot-autobuild/build/buildd/python3-snakemake_1.2.3_all.deb: drwxr-xr-x root/root 0 2012-09-24 08:47 ./ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/bin/ -rwxr-xr-x root/root 4676 2012-07-13 14:27 ./usr/bin/snakemake drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/lib/ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/lib/python3/ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/lib/python3/dist-packages/snakemake/ -rw-r--r-- root/root 9914 2012-09-24 08:00 ./usr/lib/python3/dist-packages/snakemake/workflow.py -rw-r--r-- root/root 2935 2012-09-24 08:33 ./usr/lib/python3/dist-packages/snakemake/__init__.py -rw-r--r-- root/root 1526 2012-04-23 09:54 ./usr/lib/python3/dist-packages/snakemake/logging.py -rw-r--r-- root/root 5488 2012-09-17 11:25 ./usr/lib/python3/dist-packages/snakemake/shell.py -rw-r--r-- root/root 12600 2012-09-24 08:19 ./usr/lib/python3/dist-packages/snakemake/jobs.py -rw-r--r-- root/root 16158 2012-09-24 08:32 ./usr/lib/python3/dist-packages/snakemake/rules.py -rw-r--r-- root/root 4903 2012-09-07 08:40 ./usr/lib/python3/dist-packages/snakemake/exceptions.py -rw-r--r-- root/root 1430 2012-09-17 12:19 ./usr/lib/python3/dist-packages/snakemake/utils.py -rw-r--r-- root/root 7837 2012-09-24 07:58 ./usr/lib/python3/dist-packages/snakemake/io.py -rw-r--r-- root/root 13640 2012-09-05 09:02 ./usr/lib/python3/dist-packages/snakemake/parser.py drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/share/ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-09-24 08:47 ./usr/share/doc/python3-snakemake/ -rw-r--r-- root/root 337 2012-09-24 08:34 ./usr/share/doc/python3-snakemake/changelog.gz python3-snakemake_1.2.3_i386.changes: Format: 1.8 Date: Mon, 24 Sep 2012 10:34:46 +0100 Source: python3-snakemake Binary: python3-snakemake Architecture: all Version: 1.2.3 Distribution: precise Urgency: high Maintainer: Ubuntu Build Daemon Changed-By: Johannes Koester Description: python3-snakemake - A Python based language and execution environment for make-like w Changes: python3-snakemake (1.2.3) precise; urgency=high . * New upstream release. Checksums-Sha1: 852d3186ada0be37204ae9bf4c79fe3e379023fb 23310 python3-snakemake_1.2.3_all.deb Checksums-Sha256: 9467b0d331ca965d1da15635d94d7bb9e269ca878dfa4f5d8a9fc67327cb8357 23310 python3-snakemake_1.2.3_all.deb Files: 19f8b9b9d725e518f95a2958b1e54247 23310 science extra python3-snakemake_1.2.3_all.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120924-0847 Build needed 00:00:05, 3372k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3'] Scanning for processes to kill in build /home/buildd/build-d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3'] Unmounting chroot for build d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'd7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3'] Removing build d7416b7d3ca6e0deef1d1f1a413931fbc35b1eb3