RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux chindi05 2.6.24-32-xen #1 SMP Mon Dec 3 16:12:25 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04 dpkg-dev_1.14.16.6ubuntu4.2. Syncing the system clock with the buildd NTP service... 26 Feb 12:39:29 ntpdate[3377]: step time server 10.211.37.1 offset -87626.284157 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5636986', '/home/buildd/filecache-default/2edf3d13dd20e6c791fc6a07999fc68aa9868cbd'] Unpacking chroot for build PACKAGEBUILD-5636986 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5636986'] Mounting chroot for build PACKAGEBUILD-5636986 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5636986', 'deb http://ppa.launchpad.net/genomeinformatics/bioinformatics-software/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5636986 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5636986', 'i386'] Updating debian chroot for build PACKAGEBUILD-5636986 Ign http://ppa.launchpad.net precise InRelease Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ppa.launchpad.net precise Release.gpg [316 B] Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:4 http://ppa.launchpad.net precise Release [11.9 kB] Get:5 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:6 http://ftpmaster.internal precise Release [49.6 kB] Get:7 http://ftpmaster.internal precise-security Release [49.6 kB] Get:8 http://ftpmaster.internal precise-updates Release [49.6 kB] Ign http://ppa.launchpad.net precise Release Get:9 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:10 http://ppa.launchpad.net precise/main i386 Packages [426 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [387 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [4620 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [95.4 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2641 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [74 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [72 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [72 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [774 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [12.2 kB] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [241 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [14.7 kB] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [170 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [1299 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [1253 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [56.4 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [337 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [8473 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [2988 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [138 kB] Fetched 12.8 MB in 8s (1486 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 4CD7AA60FCDFFF54 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files bash binutils build-essential busybox-initramfs coreutils dpkg dpkg-dev gnupg gpgv ifupdown initramfs-tools initramfs-tools-bin initscripts iproute libapt-pkg4.12 libasn1-8-heimdal libc-bin libc-dev-bin libc6 libc6-dev libcurl3-gnutls libdbus-1-3 libdpkg-perl libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblockfile-bin liblockfile1 libnih-dbus1 libnih1 libpciaccess0 libplymouth2 libroken18-heimdal libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 libwind0-heimdal linux-libc-dev login lsb-base make mountall multiarch-support openssl passwd perl perl-base perl-modules plymouth procps python-minimal python2.7-minimal sysv-rc sysvinit-utils tzdata ubuntu-keyring udev upstart 78 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After this operation, 126 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files bash dpkg coreutils login perl perl-base perl-modules sysv-rc plymouth libplymouth2 initramfs-tools-bin initramfs-tools mountall initscripts upstart libc-dev-bin libc6-dev libc-bin libc6 sysvinit-utils libdbus-1-3 libdrm2 libpciaccess0 libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libglib2.0-0 libudev0 busybox-initramfs lsb-base procps udev libnih-dbus1 libnih1 passwd iproute ifupdown linux-libc-dev tzdata libssl1.0.0 python2.7-minimal python-minimal libapt-pkg4.12 ubuntu-keyring gpgv gnupg apt liblockfile-bin liblockfile1 libsqlite3-0 libroken18-heimdal libasn1-8-heimdal libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-2 libldap-2.4-2 libcurl3-gnutls multiarch-support apt-transport-https openssl binutils make dpkg-dev libdpkg-perl build-essential Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.7 [61.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main bash i386 4.2-2ubuntu2.1 [616 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main dpkg i386 1.16.1.2ubuntu7.2 [1815 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main coreutils i386 8.13-3ubuntu3.2 [2181 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-updates/main login i386 1:4.1.4.2+svn3283-3ubuntu5.1 [286 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main perl i386 5.14.2-6ubuntu2.4 [3697 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main perl-base i386 5.14.2-6ubuntu2.4 [1471 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-security/main perl-modules all 5.14.2-6ubuntu2.4 [3389 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main plymouth i386 0.8.2-2ubuntu31.1 [125 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libplymouth2 i386 0.8.2-2ubuntu31.1 [91.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-updates/main initramfs-tools-bin i386 0.99ubuntu13.4 [9742 B] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main initramfs-tools all 0.99ubuntu13.4 [49.2 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-updates/main mountall i386 2.36.4 [70.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7.2 [313 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libc-dev-bin i386 2.15-0ubuntu10.5 [78.2 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-security/main libc6-dev i386 2.15-0ubuntu10.5 [5107 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-security/main libc-bin i386 2.15-0ubuntu10.5 [1133 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-security/main libc6 i386 2.15-0ubuntu10.5 [3949 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-security/main libdbus-1-3 i386 1.4.18-1ubuntu1.4 [148 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main libdrm2 i386 2.4.46-1ubuntu0.0.0.1 [27.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main libpciaccess0 i386 0.12.902-1ubuntu0.2 [22.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main libdrm-intel1 i386 2.4.46-1ubuntu0.0.0.1 [65.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main libdrm-nouveau1a i386 2.4.46-1ubuntu0.0.0.1 [14.2 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-updates/main libdrm-radeon1 i386 2.4.46-1ubuntu0.0.0.1 [27.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.4-0ubuntu1 [1190 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.4 [32.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise-updates/main busybox-initramfs i386 1:1.18.5-1ubuntu4.1 [172 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise-updates/main lsb-base all 4.0-0ubuntu20.3 [10.5 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise-updates/main procps i386 1:3.2.8-11ubuntu6.3 [225 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.4 [350 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise-updates/main libnih-dbus1 i386 1.0.3-4ubuntu9.1 [15.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise-updates/main libnih1 i386 1.0.3-4ubuntu9.1 [53.7 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise-updates/main passwd i386 1:4.1.4.2+svn3283-3ubuntu5.1 [940 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise-updates/main iproute i386 20111117-1ubuntu2.1 [440 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise-updates/main ifupdown i386 0.7~beta2ubuntu10 [48.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-59.90 [862 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2013g-0ubuntu0.12.04 [471 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.11 [1007 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise-security/main python2.7-minimal i386 2.7.3-0ubuntu3.4 [1690 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise-updates/main python-minimal i386 2.7.3-0ubuntu2.2 [29.2 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise-updates/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.16 [947 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise-updates/main ubuntu-keyring all 2011.11.21.1 [16.7 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise-security/main gpgv i386 1.4.11-3ubuntu2.5 [179 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise-security/main gnupg i386 1.4.11-3ubuntu2.5 [790 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise-updates/main apt i386 0.8.16~exp12ubuntu10.16 [1098 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise-updates/main liblockfile-bin i386 1.09-3ubuntu0.1 [12.4 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise-updates/main liblockfile1 i386 1.09-3ubuntu0.1 [9216 B] Get:51 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise-updates/main libroken18-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [47.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise-updates/main libasn1-8-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [242 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise-security/main libgcrypt11 i386 1.5.0-3ubuntu0.2 [281 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.5 [448 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise-updates/main libhcrypto4-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [104 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise-updates/main libheimbase1-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [33.3 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise-updates/main libwind0-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [77.8 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise-updates/main libhx509-5-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [127 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise-updates/main libkrb5-26-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [240 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise-updates/main libheimntlm0-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [16.8 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise-updates/main libgssapi3-heimdal i386 1.6~git20120311.dfsg.1-2ubuntu0.1 [112 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.4 [185 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise-security/main libcurl3-gnutls i386 7.22.0-3ubuntu4.7 [232 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise-security/main multiarch-support i386 2.15-0ubuntu10.5 [4482 B] Get:72 http://ftpmaster.internal/ubuntu/ precise-updates/main apt-transport-https i386 0.8.16~exp12ubuntu10.16 [16.3 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.11 [519 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise-security/main binutils i386 2.22-6ubuntu1.1 [2387 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise-updates/main make i386 3.81-8.1ubuntu1.1 [116 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise-updates/main dpkg-dev all 1.16.1.2ubuntu7.2 [469 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise-updates/main libdpkg-perl all 1.16.1.2ubuntu7.2 [180 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise-updates/main build-essential i386 11.5ubuntu2.1 [5796 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.4 MB in 2s (18.9 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.7_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.7) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12282 files and directories currently installed.) Preparing to replace bash 4.2-2ubuntu2 (using .../bash_4.2-2ubuntu2.1_i386.deb) ... Unpacking replacement bash ... Setting up bash (4.2-2ubuntu2.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 12282 files and directories currently installed.) Preparing to replace dpkg 1.16.1.2ubuntu7 (using .../dpkg_1.16.1.2ubuntu7.2_i386.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1.2ubuntu7.2) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace coreutils 8.13-3ubuntu3 (using .../coreutils_8.13-3ubuntu3.2_i386.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3ubuntu3.2) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu5 (using .../login_1%3a4.1.4.2+svn3283-3ubuntu5.1_i386.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.2+svn3283-3ubuntu5.1) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.4_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.4_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.4) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.4_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace plymouth 0.8.2-2ubuntu30 (using .../plymouth_0.8.2-2ubuntu31.1_i386.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2 0.8.2-2ubuntu30 (using .../libplymouth2_0.8.2-2ubuntu31.1_i386.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace initramfs-tools-bin 0.99ubuntu13 (using .../initramfs-tools-bin_0.99ubuntu13.4_i386.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace initramfs-tools 0.99ubuntu13 (using .../initramfs-tools_0.99ubuntu13.4_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace mountall 2.36 (using .../mountall_2.36.4_i386.deb) ... Unpacking replacement mountall ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7.2_i386.deb) ... Unpacking replacement upstart ... Preparing to replace libc-dev-bin 2.15-0ubuntu10 (using .../libc-dev-bin_2.15-0ubuntu10.5_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.15-0ubuntu10 (using .../libc6-dev_2.15-0ubuntu10.5_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.15-0ubuntu10 (using .../libc-bin_2.15-0ubuntu10.5_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.15-0ubuntu10.5) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace libc6 2.15-0ubuntu10 (using .../libc6_2.15-0ubuntu10.5_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.15-0ubuntu10.5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12283 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace libdbus-1-3 1.4.18-1ubuntu1 (using .../libdbus-1-3_1.4.18-1ubuntu1.4_i386.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libdrm2 2.4.32-1ubuntu1 (using .../libdrm2_2.4.46-1ubuntu0.0.0.1_i386.deb) ... Unpacking replacement libdrm2 ... Preparing to replace libpciaccess0 0.12.902-1 (using .../libpciaccess0_0.12.902-1ubuntu0.2_i386.deb) ... Unpacking replacement libpciaccess0 ... Preparing to replace libdrm-intel1 2.4.32-1ubuntu1 (using .../libdrm-intel1_2.4.46-1ubuntu0.0.0.1_i386.deb) ... Unpacking replacement libdrm-intel1 ... Preparing to replace libdrm-nouveau1a 2.4.32-1ubuntu1 (using .../libdrm-nouveau1a_2.4.46-1ubuntu0.0.0.1_i386.deb) ... Unpacking replacement libdrm-nouveau1a ... Preparing to replace libdrm-radeon1 2.4.32-1ubuntu1 (using .../libdrm-radeon1_2.4.46-1ubuntu0.0.0.1_i386.deb) ... Unpacking replacement libdrm-radeon1 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.4-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.4_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace busybox-initramfs 1:1.18.5-1ubuntu4 (using .../busybox-initramfs_1%3a1.18.5-1ubuntu4.1_i386.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace lsb-base 4.0-0ubuntu20 (using .../lsb-base_4.0-0ubuntu20.3_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu20.3) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace procps 1:3.2.8-11ubuntu6 (using .../procps_1%3a3.2.8-11ubuntu6.3_i386.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement procps ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.4_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libnih-dbus1 1.0.3-4ubuntu9 (using .../libnih-dbus1_1.0.3-4ubuntu9.1_i386.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libnih1 1.0.3-4ubuntu9 (using .../libnih1_1.0.3-4ubuntu9.1_i386.deb) ... Unpacking replacement libnih1 ... Preparing to replace passwd 1:4.1.4.2+svn3283-3ubuntu5 (using .../passwd_1%3a4.1.4.2+svn3283-3ubuntu5.1_i386.deb) ... Unpacking replacement passwd ... Setting up libdbus-1-3 (1.4.18-1ubuntu1.4) ... Setting up libnih1 (1.0.3-4ubuntu9.1) ... Setting up libnih-dbus1 (1.0.3-4ubuntu9.1) ... Setting up libudev0 (175-0ubuntu9.4) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up libglib2.0-0 (2.32.4-0ubuntu1) ... No schema files found: doing nothing. Setting up initramfs-tools-bin (0.99ubuntu13.4) ... Setting up busybox-initramfs (1:1.18.5-1ubuntu4.1) ... Setting up libdrm2 (2.4.46-1ubuntu0.0.0.1) ... Setting up libpciaccess0 (0.12.902-1ubuntu0.2) ... Setting up libdrm-intel1 (2.4.46-1ubuntu0.0.0.1) ... Setting up libdrm-nouveau1a (2.4.46-1ubuntu0.0.0.1) ... Setting up libdrm-radeon1 (2.4.46-1ubuntu0.0.0.1) ... Setting up libplymouth2 (0.8.2-2ubuntu31.1) ... Setting up upstart (1.5-0ubuntu7.2) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up passwd (1:4.1.4.2+svn3283-3ubuntu5.1) ... Setting up procps (1:3.2.8-11ubuntu6.3) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (175-0ubuntu9.4) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up initramfs-tools (0.99ubuntu13.4) ... update-initramfs: deferring update (trigger activated) Setting up plymouth (0.8.2-2ubuntu31.1) ... update-initramfs: deferring update (trigger activated) Setting up mountall (2.36.4) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... (Reading database ... 12292 files and directories currently installed.) Preparing to replace iproute 20111117-1ubuntu2 (using .../iproute_20111117-1ubuntu2.1_i386.deb) ... Unpacking replacement iproute ... Preparing to replace ifupdown 0.7~beta2ubuntu8 (using .../ifupdown_0.7~beta2ubuntu10_i386.deb) ... Unpacking replacement ifupdown ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-59.90_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace tzdata 2012b-1 (using .../tzdata_2013g-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2013g-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Feb 25 12:20:10 UTC 2014. Universal Time is now: Tue Feb 25 12:20:10 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12303 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.11_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.11) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12303 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.4_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.4) ... (Reading database ... 12303 files and directories currently installed.) Preparing to replace python-minimal 2.7.3-0ubuntu2 (using .../python-minimal_2.7.3-0ubuntu2.2_i386.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.7.3-0ubuntu2.2) ... (Reading database ... 12303 files and directories currently installed.) Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.16_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.16) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12303 files and directories currently installed.) Preparing to replace ubuntu-keyring 2011.11.21 (using .../ubuntu-keyring_2011.11.21.1_all.deb) ... Unpacking replacement ubuntu-keyring ... Setting up ubuntu-keyring (2011.11.21.1) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: public key "Ubuntu Archive Automatic Signing Key (2012) " imported gpg: key EFE21092: public key "Ubuntu CD Image Automatic Signing Key (2012) " imported gpg: Total number processed: 4 gpg: imported: 2 (RSA: 2) gpg: unchanged: 2 gpg: no ultimately trusted keys found (Reading database ... 12303 files and directories currently installed.) Preparing to replace gpgv 1.4.11-3ubuntu2 (using .../gpgv_1.4.11-3ubuntu2.5_i386.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.11-3ubuntu2.5) ... (Reading database ... 12303 files and directories currently installed.) Preparing to replace gnupg 1.4.11-3ubuntu2 (using .../gnupg_1.4.11-3ubuntu2.5_i386.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.11-3ubuntu2.5) ... (Reading database ... 12303 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.16_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.16) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 No packages found matching linux-image-[0-9]*. (Reading database ... 12304 files and directories currently installed.) Preparing to replace liblockfile-bin 1.09-3 (using .../liblockfile-bin_1.09-3ubuntu0.1_i386.deb) ... Unpacking replacement liblockfile-bin ... 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Preparing to replace libheimbase1-heimdal 1.6~git20120311.dfsg.1-2 (using .../libheimbase1-heimdal_1.6~git20120311.dfsg.1-2ubuntu0.1_i386.deb) ... Unpacking replacement libheimbase1-heimdal ... Preparing to replace libwind0-heimdal 1.6~git20120311.dfsg.1-2 (using .../libwind0-heimdal_1.6~git20120311.dfsg.1-2ubuntu0.1_i386.deb) ... Unpacking replacement libwind0-heimdal ... Preparing to replace libhx509-5-heimdal 1.6~git20120311.dfsg.1-2 (using .../libhx509-5-heimdal_1.6~git20120311.dfsg.1-2ubuntu0.1_i386.deb) ... Unpacking replacement libhx509-5-heimdal ... Preparing to replace libkrb5-26-heimdal 1.6~git20120311.dfsg.1-2 (using .../libkrb5-26-heimdal_1.6~git20120311.dfsg.1-2ubuntu0.1_i386.deb) ... Unpacking replacement libkrb5-26-heimdal ... Preparing to replace libheimntlm0-heimdal 1.6~git20120311.dfsg.1-2 (using .../libheimntlm0-heimdal_1.6~git20120311.dfsg.1-2ubuntu0.1_i386.deb) ... Unpacking replacement libheimntlm0-heimdal ... Preparing to replace libgssapi3-heimdal 1.6~git20120311.dfsg.1-2 (using .../libgssapi3-heimdal_1.6~git20120311.dfsg.1-2ubuntu0.1_i386.deb) ... Unpacking replacement libgssapi3-heimdal ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.4_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace libcurl3-gnutls 7.22.0-3ubuntu4 (using .../libcurl3-gnutls_7.22.0-3ubuntu4.7_i386.deb) ... Unpacking replacement libcurl3-gnutls ... Preparing to replace multiarch-support 2.15-0ubuntu10 (using .../multiarch-support_2.15-0ubuntu10.5_i386.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.15-0ubuntu10.5) ... (Reading database ... 12304 files and directories currently installed.) Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.16_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.11_i386.deb) ... Unpacking replacement openssl ... Preparing to replace binutils 2.22-6ubuntu1 (using .../binutils_2.22-6ubuntu1.1_i386.deb) ... Unpacking replacement binutils ... Preparing to replace make 3.81-8.1ubuntu1 (using .../make_3.81-8.1ubuntu1.1_i386.deb) ... Unpacking replacement make ... Preparing to replace dpkg-dev 1.16.1.2ubuntu7 (using .../dpkg-dev_1.16.1.2ubuntu7.2_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.1.2ubuntu7 (using .../libdpkg-perl_1.16.1.2ubuntu7.2_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace build-essential 11.5ubuntu2 (using .../build-essential_11.5ubuntu2.1_i386.deb) ... Unpacking replacement build-essential ... Setting up libc-dev-bin (2.15-0ubuntu10.5) ... Setting up linux-libc-dev (3.2.0-59.90) ... Setting up libc6-dev (2.15-0ubuntu10.5) ... Setting up iproute (20111117-1ubuntu2.1) ... Setting up ifupdown (0.7~beta2ubuntu10) ... Setting up liblockfile-bin (1.09-3ubuntu0.1) ... Setting up liblockfile1 (1.09-3ubuntu0.1) ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libroken18-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libasn1-8-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.2) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.5) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libhcrypto4-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libheimbase1-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libwind0-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libhx509-5-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libkrb5-26-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libheimntlm0-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libgssapi3-heimdal (1.6~git20120311.dfsg.1-2ubuntu0.1) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.4) ... Setting up libcurl3-gnutls (7.22.0-3ubuntu4.7) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.16) ... Setting up openssl (1.0.1-4ubuntu5.11) ... Setting up binutils (2.22-6ubuntu1.1) ... Setting up make (3.81-8.1ubuntu1.1) ... Setting up perl-modules (5.14.2-6ubuntu2.4) ... Setting up perl (5.14.2-6ubuntu2.4) ... Setting up libdpkg-perl (1.16.1.2ubuntu7.2) ... Setting up dpkg-dev (1.16.1.2ubuntu7.2) ... Setting up build-essential (11.5ubuntu2.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5636986', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'hdf5_1.8.11-5ubuntu7~precise1~ppa1.dsc'] Initiating build PACKAGEBUILD-5636986 with 1 jobs across 1 processor cores. Kernel reported to sbuild: 2.6.24-32-xen #1 SMP Mon Dec 3 16:12:25 UTC 2012 i686 Automatic build of hdf5_1.8.11-5ubuntu7~precise1~ppa1 on chindi05 by sbuild/i386 1.170.5 Build started at 20140225-1220 ****************************************************************************** hdf5_1.8.11-5ubuntu7~precise1~ppa1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: dpkg-dev (>= 1.16.1~), libmpich2-dev, zlib1g-dev, libopenmpi-dev [!hppa !mips !mipsel !s390 !s390x !sh4 !m68k], libjpeg-dev, debhelper (>= 8.1.3), sed (>= 4.1.5), gfortran, libibverbs-dev [!arm64 !arm !hppa !mips !mipsel !s390 !s390x !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !sh4], sharutils, mpi-default-dev, chrpath, dh-autoreconf Checking for already installed source dependencies... dpkg-dev: already installed (1.16.1.2ubuntu7.2 >= 1.16.1~ is satisfied) libmpich2-dev: missing zlib1g-dev: missing libopenmpi-dev: missing libjpeg-dev: missing debhelper: missing sed: already installed (4.2.1-9 >= 4.1.5 is satisfied) gfortran: missing libibverbs-dev: missing sharutils: missing mpi-default-dev: missing chrpath: missing dh-autoreconf: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install libmpich2-dev zlib1g-dev libopenmpi-dev libjpeg-dev debhelper gfortran libibverbs-dev sharutils mpi-default-dev chrpath dh-autoreconf Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-apparmor file gettext gettext-base gfortran-4.6 groff-base html2text intltool-debian libcr-dev libcr0 libcroco3 libgettextpo0 libgfortran3 libibverbs1 libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic1 libmpich2-3 libnuma1 libopenmpi1.3 libpipeline1 libtool libtorque2 libunistring0 libxml2 m4 man-db openmpi-common po-debconf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff blcr-dkms libtool-doc automaken gcj less www-browser libmail-box-perl bsd-mailx mailx Recommended packages: autopoint curl wget lynx-cur mpich2 libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils chrpath debhelper dh-apparmor dh-autoreconf file gettext gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian libcr-dev libcr0 libcroco3 libgettextpo0 libgfortran3 libibverbs-dev libibverbs1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic1 libmpich2-3 libmpich2-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libtool libtorque2 libunistring0 libxml2 m4 man-db mpi-default-dev openmpi-common po-debconf sharutils zlib1g-dev 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 20.0 MB of archives. After this operation, 64.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libgfortran3 libjpeg-turbo8 libmagic1 file bsdmainutils gettext-base groff-base man-db m4 autoconf autotools-dev automake chrpath html2text gettext intltool-debian po-debconf dh-apparmor debhelper libtool dh-autoreconf gfortran-4.6 gfortran libcr0 libcr-dev libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjpeg-dev libnuma1 libtorque2 openmpi-common sharutils zlib1g-dev libibverbs1 libibverbs-dev libmpich2-3 libmpich2-dev libopenmpi1.3 libopenmpi-dev mpi-default-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.6 [662 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main libcroco3 i386 0.6.5-1ubuntu0.1 [100 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libgfortran3 i386 4.6.3-1ubuntu5 [355 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu4.3 [118 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main man-db i386 2.6.1-2ubuntu1 [742 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main m4 i386 1.4.16-2ubuntu1 [195 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main autoconf all 2.68-1ubuntu2 [560 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main automake all 1:1.11.3-1ubuntu2 [571 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main chrpath i386 0.13-2build2 [13.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main dh-apparmor all 2.7.102-0ubuntu3.9 [8950 B] Get:24 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libtool i386 2.4.2-1ubuntu1 [302 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main dh-autoreconf all 5ubuntu1 [14.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main gfortran-4.6 i386 4.6.3-1ubuntu5 [5367 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main gfortran i386 4:4.6.3-1ubuntu5 [1202 B] Get:29 http://ftpmaster.internal/ubuntu/ precise-updates/universe libcr0 i386 0.8.2-15ubuntu2.1 [21.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise-updates/universe libcr-dev i386 0.8.2-15ubuntu2.1 [28.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise-security/main libjpeg-turbo8-dev i386 1.1.90+svn733-0ubuntu4.3 [414 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu7 [2112 B] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8-dev i386 8c-2ubuntu7 [1544 B] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libnuma1 i386 2.0.8~rc3-1 [23.5 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/universe libtorque2 i386 2.4.16+dfsg-1build1 [87.4 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/universe openmpi-common all 1.4.3-2.1ubuntu3 [84.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main sharutils i386 1:4.11-1 [140 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libibverbs1 i386 1.1.5-1ubuntu1 [28.5 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libibverbs-dev i386 1.1.5-1ubuntu1 [74.4 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-3 i386 1.4.1-1ubuntu1 [795 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-dev i386 1.4.1-1ubuntu1 [1031 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi1.3 i386 1.4.3-2.1ubuntu3 [1290 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi-dev i386 1.4.3-2.1ubuntu3 [2623 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/universe mpi-default-dev i386 1.0.1 [3642 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.0 MB in 1s (17.5 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 12304 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.6_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1ubuntu0.1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1ubuntu5_i386.deb) ... Selecting previously unselected package libjpeg-turbo8. Unpacking libjpeg-turbo8 (from .../libjpeg-turbo8_1.1.90+svn733-0ubuntu4.3_i386.deb) ... Selecting previously unselected package libmagic1. 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Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.6) ... Setting up libcroco3 (0.6.5-1ubuntu0.1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libgfortran3 (4.6.3-1ubuntu5) ... Setting up libjpeg-turbo8 (1.1.90+svn733-0ubuntu4.3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2ubuntu1) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20120210.1ubuntu1) ... Setting up automake (1:1.11.3-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up chrpath (0.13-2build2) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.9) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up libtool (2.4.2-1ubuntu1) ... Setting up dh-autoreconf (5ubuntu1) ... Setting up gfortran-4.6 (4.6.3-1ubuntu5) ... Setting up gfortran (4:4.6.3-1ubuntu5) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libcr0 (0.8.2-15ubuntu2.1) ... Setting up libcr-dev (0.8.2-15ubuntu2.1) ... Setting up libjpeg-turbo8-dev (1.1.90+svn733-0ubuntu4.3) ... Setting up libjpeg8 (8c-2ubuntu7) ... Setting up libjpeg8-dev (8c-2ubuntu7) ... Setting up libjpeg-dev (8c-2ubuntu7) ... Setting up libnuma1 (2.0.8~rc3-1) ... Setting up libtorque2 (2.4.16+dfsg-1build1) ... Setting up openmpi-common (1.4.3-2.1ubuntu3) ... Setting up sharutils (1:4.11-1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libibverbs1 (1.1.5-1ubuntu1) ... Setting up libibverbs-dev (1.1.5-1ubuntu1) ... Setting up libmpich2-3 (1.4.1-1ubuntu1) ... Setting up libmpich2-dev (1.4.1-1ubuntu1) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Setting up libopenmpi1.3 (1.4.3-2.1ubuntu3) ... Setting up libopenmpi-dev (1.4.3-2.1ubuntu3) ... Setting up mpi-default-dev (1.0.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10.5 make_3.81-8.1ubuntu1.1 dpkg-dev_1.16.1.2ubuntu7.2 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1.1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Feb 25 12:16:49 2014 UTC using RSA key ID F9AED7BA gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./hdf5_1.8.11-5ubuntu7~precise1~ppa1.dsc dpkg-source: info: extracting hdf5 in hdf5-1.8.11 dpkg-source: info: unpacking hdf5_1.8.11.orig.tar.gz dpkg-source: info: unpacking hdf5_1.8.11-5ubuntu7~precise1~ppa1.debian.tar.gz dpkg-source: info: applying path_max.diff dpkg-source: info: applying ullong_force.diff dpkg-source: info: applying relax-version-check.patch dpkg-source: info: applying skip_cxx_inclusion.diff dpkg-source: info: applying soname.diff dpkg-source: info: applying ftbfs-ia64.diff dpkg-source: info: applying 0001-Fix-long-double-detection.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package hdf5 dpkg-buildpackage: source version 1.8.11-5ubuntu7~precise1~ppa1 dpkg-source --before-build hdf5-1.8.11 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -f debian/control.in rm -rf debian/build rm -rf debian/build-openmpi rm -rf debian/build-mpich2 find debian -type l | xargs rm -f grep -v ^\% debian/control.in | sed -e "s/@SONAME@/7/g" -e "s/@ARCHS@/alpha armel armhf arm64 amd64 i386 ia64 powerpc powerpcspe ppc64 ppc64el sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386/" -e "s/@MAJOR_VERSION@/1.8/" > debian/control dh_autoreconf_clean dh_clean configure-stamp* build-stamp* install-stamp* debian/*.shlibs debian/rules build cd debian && for i in *_devlib; do j=`basename $i _devlib`; \ ln -sf $i libhdf5-dev.$j ; \ ln -sf $i libhdf5-openmpi-dev.$j ; \ ln -sf $i libhdf5-mpich2-dev.$j ; \ done cd debian && for i in *_shlib; do j=`basename $i _shlib`; \ ln -sf $i libhdf5-7.$j ; \ ln -sf $i libhdf5-openmpi-7.$j ; \ ln -sf $i libhdf5-mpich2-7.$j ; \ done sed -e "s/@SONAME@/7/g" debian/shlibs.in > debian/libhdf5-7.shlibs dh_autoreconf configure.ac:20: error: Autoconf version 2.69 or higher is required configure.ac:20: the top level autom4te: /usr/bin/m4 failed with exit status: 63 aclocal: /usr/bin/autom4te failed with exit status: 63 autoreconf: aclocal failed with exit status: 63 dh_autoreconf: autoreconf -f -i returned exit code 63 make: *** [configure-stamp-debian] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 ****************************************************************************** Build finished at 20140225-1221 FAILED [dpkg-buildpackage died] ****************************************************************************** Finished at 20140225-1221 Build needed 00:00:08, 93252k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5636986'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5636986/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5636986'] Unmounting chroot for build PACKAGEBUILD-5636986... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5636986'] Removing build PACKAGEBUILD-5636986