https://launchpad.net/~ginggs/+archive/ubuntu/testing/+build/23722095 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-064 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_212~550~ubuntu20.04.1 python3-lpbuildd_212~550~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 7 May 09:43:43 ntpdate[2360529]: adjust time server 10.211.37.1 offset -0.000625 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 --image-type chroot /home/buildd/filecache-default/6534a4ff757521d8f8bbfb46d24688ecd71c00f8 Creating target for build PACKAGEBUILD-23722095 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 Starting target for build PACKAGEBUILD-23722095 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 'deb http://ppa.launchpadcontent.net/ginggs/testing/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu kinetic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-23722095 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 Adding trusted keys to build-PACKAGEBUILD-23722095 Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). OK Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). /etc/apt/trusted.gpg -------------------- pub rsa1024 2012-04-29 [SC] F749 99B3 5A9F 07F1 E13C 0C78 B5F1 95D2 08CC 41D2 uid [ unknown] Launchpad PPA for Graham Inggs /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 Updating target for build PACKAGEBUILD-23722095 Get:1 http://ppa.launchpadcontent.net/ginggs/testing/ubuntu kinetic InRelease [17.5 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:6 http://ppa.launchpadcontent.net/ginggs/testing/ubuntu kinetic/main riscv64 Packages [1652 B] Get:7 http://ppa.launchpadcontent.net/ginggs/testing/ubuntu kinetic/main Translation-en [932 B] Get:8 http://ftpmaster.internal/ubuntu kinetic/main riscv64 Packages [1290 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [511 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/restricted Translation-en [18.6 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 Packages [13.3 MB] Get:12 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5671 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/multiverse riscv64 Packages [158 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/multiverse Translation-en [112 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 Packages [195 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [82.4 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted riscv64 Packages [720 B] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted Translation-en [6720 B] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/universe riscv64 Packages [978 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [415 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse riscv64 Packages [8672 B] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse Translation-en [12.9 kB] Fetched 23.4 MB in 36s (656 kB/s) Reading package lists... W: http://ppa.launchpadcontent.net/ginggs/testing/ubuntu/dists/kinetic/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details. W: Target Packages (main/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (restricted/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (restricted/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (multiverse/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (multiverse/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (restricted/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (restricted/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (multiverse/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (multiverse/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: util-linux-extra The following packages have been kept back: dash The following packages will be upgraded: binutils binutils-common binutils-riscv64-linux-gnu bsdutils cpp-11 g++-11 gcc-11 gcc-11-base gcc-12-base libasan6 libassuan0 libatomic1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libgcc-11-dev libgcc-s1 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libjson-c5 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libreadline8 libseccomp2 libsmartcols1 libsqlite3-0 libssl3 libstdc++-11-dev libstdc++6 libtinfo6 libuuid1 libzstd1 linux-libc-dev lto-disabled-list mount ncurses-base ncurses-bin openssl pinentry-curses readline-common util-linux 54 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. Need to get 54.7 MB of archives. After this operation, 628 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 bsdutils riscv64 1:2.38-4ubuntu1 [91.0 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 ncurses-bin riscv64 6.3+20220423-2 [176 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libblkid1 riscv64 2.38-4ubuntu1 [149 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libmount1 riscv64 2.38-4ubuntu1 [157 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libsmartcols1 riscv64 2.38-4ubuntu1 [102 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 util-linux-extra riscv64 2.38-4ubuntu1 [103 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 util-linux riscv64 2.38-4ubuntu1 [1142 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpam0g riscv64 1.4.0-13ubuntu1 [55.6 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpam-modules-bin riscv64 1.4.0-13ubuntu1 [36.9 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpam-modules riscv64 1.4.0-13ubuntu1 [263 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 mount riscv64 2.38-4ubuntu1 [130 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libatomic1 riscv64 12-20220428-1ubuntu1 [7870 B] Get:14 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-12-base riscv64 12-20220428-1ubuntu1 [19.0 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libstdc++6 riscv64 12-20220428-1ubuntu1 [690 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgomp1 riscv64 12-20220428-1ubuntu1 [111 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcc1-0 riscv64 12-20220428-1ubuntu1 [43.6 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcc-s1 riscv64 12-20220428-1ubuntu1 [44.2 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libgpg-error0 riscv64 1.45-2 [62.7 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpam-runtime all 1.4.0-13ubuntu1 [40.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre2-8-0 riscv64 10.40-1 [141 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre3 riscv64 2:8.39-14 [171 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libncursesw6 riscv64 6.3+20220423-2 [127 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libncurses6 riscv64 6.3+20220423-2 [92.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libtinfo6 riscv64 6.3+20220423-2 [89.8 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libuuid1 riscv64 2.38-4ubuntu1 [26.2 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libzstd1 riscv64 1.5.2+dfsg-1 [318 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libp11-kit0 riscv64 0.24.1-1 [205 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libgnutls30 riscv64 3.7.4-2ubuntu1 [875 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu6 [18.0 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjson-c5 riscv64 0.16-1 [29.3 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 readline-common all 8.1.2-1.2 [53.6 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libreadline8 riscv64 8.1.2-1.2 [130 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libseccomp2 riscv64 2.5.4-1ubuntu1 [44.0 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libsqlite3-0 riscv64 3.38.3-1 [572 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libssl3 riscv64 3.0.3-0ubuntu1 [1437 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 openssl riscv64 3.0.3-0ubuntu1 [1135 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpng16-16 riscv64 1.6.37-5 [174 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libctf-nobfd0 riscv64 2.38-4ubuntu1 [98.9 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libctf0 riscv64 2.38-4ubuntu1 [96.8 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.38-4ubuntu1 [911 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libbinutils riscv64 2.38-4ubuntu1 [485 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 binutils riscv64 2.38-4ubuntu1 [3090 B] Get:44 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 binutils-common riscv64 2.38-4ubuntu1 [214 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libasan6 riscv64 11.3.0-1ubuntu1 [2107 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main riscv64 g++-11 riscv64 11.3.0-1ubuntu1 [9302 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-11 riscv64 11.3.0-1ubuntu1 [15.9 MB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libstdc++-11-dev riscv64 11.3.0-1ubuntu1 [4775 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcc-11-dev riscv64 11.3.0-1ubuntu1 [2396 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main riscv64 cpp-11 riscv64 11.3.0-1ubuntu1 [7990 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-11-base riscv64 11.3.0-1ubuntu1 [21.1 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libassuan0 riscv64 2.5.5-3 [31.9 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 linux-libc-dev riscv64 5.15.0-28.29 [1302 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main riscv64 lto-disabled-list all 25 [12.6 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 pinentry-curses riscv64 1.2.0-1 [37.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.7 MB in 9s (6087 kB/s) (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38-4ubuntu1_riscv64.deb ... Unpacking bsdutils (1:2.38-4ubuntu1) over (1:2.37.2-4ubuntu3) ... Setting up bsdutils (1:2.38-4ubuntu1) ... (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3+20220423-2_riscv64.deb ... Unpacking ncurses-bin (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-bin (6.3+20220423-2) ... (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../libblkid1_2.38-4ubuntu1_riscv64.deb ... Unpacking libblkid1:riscv64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libblkid1:riscv64 (2.38-4ubuntu1) ... (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../libmount1_2.38-4ubuntu1_riscv64.deb ... Unpacking libmount1:riscv64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libmount1:riscv64 (2.38-4ubuntu1) ... (Reading database ... 13361 files and directories currently installed.) 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Setting up binutils-riscv64-linux-gnu (2.38-4ubuntu1) ... Setting up binutils (2.38-4ubuntu1) ... Setting up libstdc++-11-dev:riscv64 (11.3.0-1ubuntu1) ... Setting up gcc-11 (11.3.0-1ubuntu1) ... Setting up g++-11 (11.3.0-1ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23722095 riscv64 kinetic -c chroot:build-PACKAGEBUILD-23722095 --arch=riscv64 --dist=kinetic --nolog 'r-base_4.2.0-1ubuntu1~ppa1.dsc' Initiating build PACKAGEBUILD-23722095 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-064.buildd +==============================================================================+ | r-base 4.2.0-1ubuntu1~ppa1 (riscv64) Sat, 07 May 2022 09:49:21 +0000 | +==============================================================================+ Package: r-base Version: 4.2.0-1ubuntu1~ppa1 Source Version: 4.2.0-1ubuntu1~ppa1 Distribution: kinetic Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23722095/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-blwoNe/resolver-JwjRPi' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-base_4.2.0-1ubuntu1~ppa1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-base-blwoNe/r-base-4.2.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-blwoNe' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, build-essential, fakeroot Filtered Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [678 B] Get:5 copy:/<>/apt_archive ./ Packages [730 B] Fetched 2371 B in 1s (4113 B/s) Reading package lists... Reading package lists... W: Target Packages (main/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (restricted/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (multiverse/binary-riscv64/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:5 and /etc/apt/sources.list.d/proposed.list:1 Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bison bsdextrautils ca-certificates-java debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-11 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base icu-devtools intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgfortran-11-dev libgfortran5 libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu71 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldap-2.5-0 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmd0 libmime-charset-perl libmount-dev libmpdec3 libncurses-dev libncurses5-dev libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol-dev libsigsegv2 libsm-dev libsm6 libsombok3 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl libvulkan1 libwebp7 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2 libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libzzip-0-13 lmodern m4 man-db media-types mpack openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless pango1.0-tools pkg-config po-debconf preview-latex-style python3 python3-distutils python3-lib2to3 python3-minimal python3.10 python3.10-minimal t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff libasound2-plugins alsa-utils liblapack-doc libcairo2-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev libdatrie-doc freetype2-doc libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils libice-doc icu-doc liblcms2-utils liblzma-doc libencode-hanextra-perl libpod2-base-perl ncurses-doc libpango1.0-doc pcscd readline-doc lm-sensors libsm-doc libthai-doc libtool-doc gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser default-mta | mail-transport-agent inews openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic graphicsmagick libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support tcl-tclreadline tcl8.6-doc ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec chktex dvidvi dvipng fragmaster lacheck latexdiff latexmk purifyeps xindy cm-super texlive-fonts-extra-doc texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex tk8.6-doc Recommended packages: curl | wget | lynx alsa-ucm-conf alsa-topology-conf bzip2-doc dbus libarchive-cpio-perl libgl1-amber-dri shared-mime-info xdg-user-dirs javascript-common libldap-common libpng-tools publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libwww-perl libxml-sax-expat-perl libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl dvisvgm ghostscript libfile-homedir-perl liblog-log4perl-perl libyaml-tiny-perl ruby fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-roboto-unhinted fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix texlive-fonts-extra-links tex-gyre tipa tk xterm | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bison bsdextrautils ca-certificates-java debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-11 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base icu-devtools intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgfortran-11-dev libgfortran5 libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu71 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldap-2.5-0 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmd0 libmime-charset-perl libmount-dev libmpdec3 libncurses-dev libncurses5-dev libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol-dev libsigsegv2 libsm-dev libsm6 libsombok3 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl libvulkan1 libwebp7 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2 libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libzzip-0-13 lmodern m4 man-db media-types mpack openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless pango1.0-tools pkg-config po-debconf preview-latex-style python3 python3-distutils python3-lib2to3 python3-minimal python3.10 python3.10-minimal sbuild-build-depends-main-dummy t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev 0 upgraded, 296 newly installed, 0 to remove and 1 not upgraded. Need to get 963 MB of archives. After this operation, 2721 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpython3.10-minimal riscv64 3.10.4-3 [793 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libexpat1 riscv64 2.4.8-1 [85.1 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main riscv64 python3.10-minimal riscv64 3.10.4-3 [1817 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main riscv64 python3-minimal riscv64 3.10.4-0ubuntu2 [24.4 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main riscv64 media-types all 7.1.0 [25.6 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libmpdec3 riscv64 2.5.1-2build2 [85.3 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpython3.10-stdlib riscv64 3.10.4-3 [1717 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main riscv64 python3.10 riscv64 3.10.4-3 [488 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpython3-stdlib riscv64 3.10.4-0ubuntu2 [6988 B] Get:11 http://ftpmaster.internal/ubuntu kinetic/main riscv64 python3 riscv64 3.10.4-0ubuntu2 [22.8 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main riscv64 ucf all 3.0043 [56.1 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 tex-common all 6.17 [33.7 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglib2.0-0 riscv64 2.72.1-1 [1310 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgirepository-1.0-1 riscv64 1.72.0-1 [80.8 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gir1.2-glib-2.0 riscv64 1.72.0-1 [164 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libmd0 riscv64 1.0.4-1build1 [30.1 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libbsd0 riscv64 0.11.6-1 [40.7 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdbus-1-3 riscv64 1.12.20-2ubuntu4 [173 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libelf1 riscv64 0.187-1 [46.4 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfribidi0 riscv64 1.0.8-2ubuntu3.1 [25.9 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglib2.0-data all 2.72.1-1 [4908 B] Get:23 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libicu71 riscv64 71.1-2 [10.6 MB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1 [597 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xkb-data all 2.35.1-1 [393 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 bash-completion all 1:2.11-6ubuntu1 [179 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 bsdextrautils riscv64 2.38-4ubuntu1 [81.5 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libmagic-mgc riscv64 1:5.41-4 [257 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libmagic1 riscv64 1:5.41-4 [88.7 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 file riscv64 1:5.41-4 [20.6 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gettext-base riscv64 0.21-4ubuntu4 [38.7 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libuchardet0 riscv64 0.0.7-1build2 [78.9 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main riscv64 groff-base riscv64 1.22.4-8build1 [925 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdrm-common all 2.4.110-1ubuntu1 [5360 B] Get:35 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdrm2 riscv64 2.4.110-1ubuntu1 [34.7 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libnghttp2-14 riscv64 1.47.0-1 [66.4 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpipeline1 riscv64 1.5.6-1 [26.1 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpsl5 riscv64 0.21.0-1.2build2 [57.3 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxau6 riscv64 1:1.0.9-1build5 [6836 B] Get:40 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu5 [10.3 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb1 riscv64 1.14-3ubuntu3 [42.6 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libx11-data all 2:1.7.5-1 [119 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libx11-6 riscv64 2:1.7.5-1 [621 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxext6 riscv64 2:1.3.4-1build1 [27.8 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxmuu1 riscv64 2:1.1.3-3 [9444 B] Get:46 http://ftpmaster.internal/ubuntu kinetic/main riscv64 man-db riscv64 2.10.2-1 [1144 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 xauth riscv64 1:1.1.1-1 [25.1 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsigsegv2 riscv64 2.13-1ubuntu3 [13.6 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main riscv64 m4 riscv64 1.4.18-5ubuntu2 [193 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main riscv64 autoconf all 2.71-2 [338 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main riscv64 automake all 1:1.16.5-1.3 [558 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main riscv64 autopoint all 0.21-4ubuntu4 [422 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main riscv64 bison riscv64 2:3.8.2+dfsg-1build1 [735 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main riscv64 java-common all 0.72build2 [6782 B] Get:56 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libavahi-common-data riscv64 0.8-5ubuntu5 [23.9 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libavahi-common3 riscv64 0.8-5ubuntu5 [20.1 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libavahi-client3 riscv64 0.8-5ubuntu5 [24.7 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcups2 riscv64 2.4.1op1-1ubuntu4 [243 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblcms2-2 riscv64 2.12~rc1-2build2 [143 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjpeg-turbo8 riscv64 2.1.2-0ubuntu1 [113 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjpeg8 riscv64 8c-2ubuntu10 [2270 B] Get:63 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libbrotli1 riscv64 1.0.9-2build6 [330 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libfreetype6 riscv64 2.11.1+dfsg-2 [361 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main riscv64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main riscv64 fontconfig-config all 2.13.1-4.2ubuntu5 [29.1 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfontconfig1 riscv64 2.13.1-4.2ubuntu5 [117 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libnspr4 riscv64 2:4.33-1 [99.9 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libnss3 riscv64 2:3.68.2-0ubuntu1 [1161 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libasound2-data all 1.2.6.1-1ubuntu1 [19.1 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libasound2 riscv64 1.2.6.1-1ubuntu1 [345 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgraphite2-3 riscv64 1.3.14-1build2 [71.5 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libharfbuzz0b riscv64 2.7.4-1ubuntu4 [369 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpcsclite1 riscv64 1.9.5-3 [20.1 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 openjdk-11-jre-headless riscv64 11.0.15+10-0ubuntu0.22.04.1 [34.2 MB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main riscv64 default-jre-headless riscv64 2:1.11-72build2 [3046 B] Get:77 http://ftpmaster.internal/ubuntu kinetic/main riscv64 ca-certificates-java all 20190909 [12.1 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libtool all 2.4.7-4 [166 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:83 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main riscv64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:85 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libdw1 riscv64 0.187-1 [227 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main riscv64 debugedit riscv64 1:5.0-4build1 [50.0 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main riscv64 dwz riscv64 0.14-1build2 [105 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gettext riscv64 0.21-4ubuntu4 [817 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 debhelper all 13.7.1ubuntu1 [940 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglvnd0 riscv64 1.4.0-1 [81.9 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglapi-mesa riscv64 22.0.1-1ubuntu2 [51.4 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libx11-xcb1 riscv64 2:1.7.5-1 [7480 B] Get:95 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-dri2-0 riscv64 1.14-3ubuntu3 [6428 B] Get:96 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-dri3-0 riscv64 1.14-3ubuntu3 [6142 B] Get:97 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-glx0 riscv64 1.14-3ubuntu3 [21.0 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-present0 riscv64 1.14-3ubuntu3 [5254 B] Get:99 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-shm0 riscv64 1.14-3ubuntu3 [5256 B] Get:100 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-sync1 riscv64 1.14-3ubuntu3 [8094 B] Get:101 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-xfixes0 riscv64 1.14-3ubuntu3 [8698 B] Get:102 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxfixes3 riscv64 1:6.0.0-1 [10.2 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxshmfence1 riscv64 1.3-1build4 [4976 B] Get:104 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxxf86vm1 riscv64 1:1.1.4-1build3 [9744 B] Get:105 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdrm-nouveau2 riscv64 2.4.110-1ubuntu1 [15.4 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdrm-radeon1 riscv64 2.4.110-1ubuntu1 [20.4 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:108 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsensors5 riscv64 1:3.6.0-7ubuntu1 [24.4 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libvulkan1 riscv64 1.3.204.1-2 [112 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgl1-mesa-dri riscv64 22.0.1-1ubuntu2 [4346 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglx-mesa0 riscv64 22.0.1-1ubuntu2 [149 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglx0 riscv64 1.4.0-1 [25.9 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgl1 riscv64 1.4.0-1 [128 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libgif7 riscv64 5.2.1-2.4 [32.5 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxi6 riscv64 2:1.8-1build1 [29.7 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxrender1 riscv64 1:0.9.10-1build4 [17.2 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main riscv64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxtst6 riscv64 2:1.2.3-1build4 [12.0 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 openjdk-11-jre riscv64 11.0.15+10-0ubuntu0.22.04.1 [172 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main riscv64 default-jre riscv64 2:1.11-72build2 [898 B] Get:121 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 openjdk-11-jdk-headless riscv64 11.0.15+10-0ubuntu0.22.04.1 [134 MB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main riscv64 default-jdk-headless riscv64 2:1.11-72build2 [946 B] Get:123 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 openjdk-11-jdk riscv64 11.0.15+10-0ubuntu0.22.04.1 [13.6 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/main riscv64 default-jdk riscv64 2:1.11-72build2 [908 B] Get:125 http://ftpmaster.internal/ubuntu kinetic/main riscv64 fontconfig riscv64 2.13.1-4.2ubuntu5 [182 kB] Get:126 http://ftpmaster.internal/ubuntu kinetic-proposed/universe riscv64 fonts-lmodern all 2.005-1 [4799 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgfortran5 riscv64 12-20220428-1ubuntu1 [376 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgfortran-11-dev riscv64 11.3.0-1ubuntu1 [1157 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gfortran-11 riscv64 11.3.0-1ubuntu1 [8495 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gfortran riscv64 4:11.2.0-1ubuntu1 [1178 B] Get:131 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gir1.2-freedesktop riscv64 1.72.0-1 [22.3 kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gir1.2-harfbuzz-0.0 riscv64 2.7.4-1ubuntu4 [31.6 kB] Get:133 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libthai-data all 0.1.29-1build1 [162 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdatrie1 riscv64 0.2.13-2 [17.8 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libthai0 riscv64 0.1.29-1build1 [16.8 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpango-1.0-0 riscv64 1.50.7+ds-1 [207 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpixman-1-0 riscv64 0.40.0-1build4 [165 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-render0 riscv64 1.14-3ubuntu3 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcairo2 riscv64 1.16.0-5ubuntu2 [571 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpangoft2-1.0-0 riscv64 1.50.7+ds-1 [45.6 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpangocairo-1.0-0 riscv64 1.50.7+ds-1 [34.4 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxft2 riscv64 2.3.4-1 [37.1 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpangoxft-1.0-0 riscv64 1.50.7+ds-1 [27.5 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 gir1.2-pango-1.0 riscv64 1.50.7+ds-1 [43.4 kB] Get:145 http://ftpmaster.internal/ubuntu kinetic/main riscv64 icu-devtools riscv64 71.1-2 [201 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libapache-pom-java all 18-1 [4720 B] Get:147 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libblas3 riscv64 3.10.0-2ubuntu1 [123 kB] Get:148 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libblas-dev riscv64 3.10.0-2ubuntu1 [281 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libbrotli-dev riscv64 1.0.9-2build6 [820 kB] Get:150 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libbz2-dev riscv64 1.0.8-5build1 [88.9 kB] Get:151 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcairo-gobject2 riscv64 1.16.0-5ubuntu2 [18.3 kB] Get:152 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblzo2-2 riscv64 2.10-2build3 [52.8 kB] Get:153 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcairo-script-interpreter2 riscv64 1.16.0-5ubuntu2 [54.0 kB] Get:154 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libexpat1-dev riscv64 2.4.8-1 [331 kB] Get:155 http://ftpmaster.internal/ubuntu kinetic/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu9 [241 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpng-dev riscv64 1.6.37-5 [368 kB] Get:157 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libfreetype-dev riscv64 2.11.1+dfsg-2 [1184 kB] Get:158 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libfreetype6-dev riscv64 2.11.1+dfsg-2 [8288 B] Get:159 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 uuid-dev riscv64 2.38-4ubuntu1 [49.8 kB] Get:160 http://ftpmaster.internal/ubuntu kinetic/main riscv64 pkg-config riscv64 0.29.2-1ubuntu3 [46.2 kB] Get:161 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfontconfig-dev riscv64 2.13.1-4.2ubuntu5 [347 kB] Get:162 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfontconfig1-dev riscv64 2.13.1-4.2ubuntu5 [1840 B] Get:163 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:164 http://ftpmaster.internal/ubuntu kinetic/main riscv64 x11proto-dev all 2022.1-1 [605 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxau-dev riscv64 1:1.0.9-1build5 [12.9 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main riscv64 x11proto-core-dev all 2022.1-1 [2438 B] Get:167 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxdmcp-dev riscv64 1:1.1.3-0ubuntu5 [36.1 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:169 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpthread-stubs0-dev riscv64 0.4-1build2 [5500 B] Get:170 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb1-dev riscv64 1.14-3ubuntu3 [164 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libx11-dev riscv64 2:1.7.5-1 [1273 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxrender-dev riscv64 1:0.9.10-1build4 [49.3 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxext-dev riscv64 2:1.3.4-1build1 [127 kB] Get:174 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libice6 riscv64 2:1.0.10-1build2 [37.3 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsm6 riscv64 2:1.2.3-1build2 [15.3 kB] Get:176 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libice-dev riscv64 2:1.0.10-1build2 [112 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsm-dev riscv64 2:1.2.3-1build2 [37.4 kB] Get:178 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpixman-1-dev riscv64 0.40.0-1build4 [649 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-render0-dev riscv64 1.14-3ubuntu3 [34.6 kB] Get:180 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxcb-shm0-dev riscv64 1.14-3ubuntu3 [9512 B] Get:181 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libffi-dev riscv64 3.4.2-4 [93.4 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglib2.0-bin riscv64 2.72.1-1 [73.9 kB] Get:183 http://ftpmaster.internal/ubuntu kinetic/main riscv64 python3-lib2to3 all 3.10.4-0ubuntu1 [76.2 kB] Get:184 http://ftpmaster.internal/ubuntu kinetic/main riscv64 python3-distutils all 3.10.4-0ubuntu1 [138 kB] Get:185 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglib2.0-dev-bin riscv64 2.72.1-1 [116 kB] Get:186 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libblkid-dev riscv64 2.38-4ubuntu1 [453 kB] Get:187 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsepol-dev riscv64 3.3-1build1 [1050 kB] Get:188 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre2-16-0 riscv64 10.40-1 [124 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre2-32-0 riscv64 10.40-1 [117 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre2-posix3 riscv64 10.40-1 [5602 B] Get:191 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre2-dev riscv64 10.40-1 [1170 kB] Get:192 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libselinux1-dev riscv64 3.3-1build2 [275 kB] Get:193 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libmount-dev riscv64 2.38-4ubuntu1 [14.7 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre16-3 riscv64 2:8.39-14 [87.3 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre32-3 riscv64 2:8.39-14 [81.1 kB] Get:196 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcrecpp0v5 riscv64 2:8.39-14 [15.8 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpcre3-dev riscv64 2:8.39-14 [912 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libglib2.0-dev riscv64 2.72.1-1 [4161 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcairo2-dev riscv64 1.16.0-5ubuntu2 [1880 kB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libcommons-parent-java all 43-1 [10.8 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libcommons-logging-java all 1.2-3 [59.9 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg2-3ubuntu1 [19.5 kB] Get:203 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg2-3ubuntu1 [53.3 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libldap-2.5-0 riscv64 2.5.11+dfsg-1~exp1ubuntu3 [163 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build4 [54.6 kB] Get:206 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libssh-4 riscv64 0.9.6-2build1 [162 kB] Get:207 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libcurl4 riscv64 7.83.0-1 [258 kB] Get:208 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libcurl4-openssl-dev riscv64 7.83.0-1 [873 kB] Get:209 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdatrie-dev riscv64 0.2.13-2 [39.9 kB] Get:210 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdeflate0 riscv64 1.10-2 [68.0 kB] Get:211 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdeflate-dev riscv64 1.10-2 [132 kB] Get:212 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfontenc1 riscv64 1:1.1.4-1build3 [13.2 kB] Get:213 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfribidi-dev riscv64 1.0.8-2ubuntu3.1 [72.0 kB] Get:214 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgraphite2-dev riscv64 1.3.14-1build2 [14.7 kB] Get:215 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libharfbuzz-icu0 riscv64 2.7.4-1ubuntu4 [5294 B] Get:216 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libharfbuzz-gobject0 riscv64 2.7.4-1ubuntu4 [22.3 kB] Get:217 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libicu-dev riscv64 71.1-2 [16.8 MB] Get:218 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libharfbuzz-dev riscv64 2.7.4-1ubuntu4 [2074 kB] Get:219 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjpeg-turbo8-dev riscv64 2.1.2-0ubuntu1 [435 kB] Get:220 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu10 [1476 B] Get:221 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjpeg-dev riscv64 8c-2ubuntu10 [1476 B] Get:222 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:223 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libkpathsea6 riscv64 2021.20210626.59705-1build2 [56.3 kB] Get:224 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblapack3 riscv64 3.10.0-2ubuntu1 [1902 kB] Get:225 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblapack-dev riscv64 3.10.0-2ubuntu1 [10.2 MB] Get:226 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libmime-charset-perl all 1.012.2-1 [30.9 kB] Get:227 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libncurses-dev riscv64 6.3+20220423-2 [867 kB] Get:228 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libncurses5-dev riscv64 6.3+20220423-2 [796 B] Get:229 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libthai-dev riscv64 0.1.29-1build1 [43.4 kB] Get:230 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxft-dev riscv64 2.3.4-1 [109 kB] Get:231 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 pango1.0-tools riscv64 1.50.7+ds-1 [40.7 kB] Get:232 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libpango1.0-dev riscv64 1.50.7+ds-1 [154 kB] Get:233 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpaper1 riscv64 1.1.28build2 [12.9 kB] Get:234 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpaper-utils riscv64 1.1.28build2 [8254 B] Get:235 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libptexenc1 riscv64 2021.20210626.59705-1build2 [37.1 kB] Get:236 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libreadline-dev riscv64 8.1.2-1.2 [365 kB] Get:237 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libsombok3 riscv64 2.4.0-2 [24.2 kB] Get:238 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsynctex2 riscv64 2021.20210626.59705-1build2 [49.8 kB] Get:239 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libtcl8.6 riscv64 8.6.12+dfsg-1build1 [936 kB] Get:240 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libteckit0 riscv64 2.5.11+ds1-1 [352 kB] Get:241 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libtexlua53 riscv64 2021.20210626.59705-1build2 [103 kB] Get:242 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:243 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjbig0 riscv64 2.1-3.1build3 [27.5 kB] Get:244 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libjbig-dev riscv64 2.1-3.1build3 [54.6 kB] Get:245 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblzma-dev riscv64 5.2.5-2ubuntu1 [282 kB] Get:246 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libwebp7 riscv64 1.2.2-2 [162 kB] Get:247 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libtiff5 riscv64 4.3.0-7 [165 kB] Get:248 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libtiffxx5 riscv64 4.3.0-7 [5616 B] Get:249 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libtiff-dev riscv64 4.3.0-7 [617 kB] Get:250 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libtiff5-dev riscv64 4.3.0-7 [2100 B] Get:251 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxss1 riscv64 1:1.2.3-1build2 [7676 B] Get:252 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libtk8.6 riscv64 8.6.12-1build1 [700 kB] Get:253 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libunicode-linebreak-perl riscv64 0.0.20190101-1build3 [97.0 kB] Get:254 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxt6 riscv64 1:1.2.1-1 [150 kB] Get:255 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxmu6 riscv64 2:1.1.3-3 [43.7 kB] Get:256 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxpm4 riscv64 1:3.5.12-1build2 [33.2 kB] Get:257 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxaw7 riscv64 2:1.0.14-1 [163 kB] Get:258 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxfont2 riscv64 1:2.0.5-1build1 [88.6 kB] Get:259 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxkbfile1 riscv64 1:1.1.0-1build3 [65.1 kB] Get:260 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxml-namespacesupport-perl all 1.12-1.1 [13.2 kB] Get:261 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxml-sax-base-perl all 1.09-1.1 [19.0 kB] Get:262 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] Get:263 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxml-libxml-perl riscv64 2.0207+dfsg+really+2.0134-1 [312 kB] Get:264 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 libxrandr2 riscv64 2:1.5.2-2 [17.6 kB] Get:265 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxss-dev riscv64 1:1.2.3-1build2 [15.8 kB] Get:266 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libxt-dev riscv64 1:1.2.1-1 [638 kB] Get:267 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libzzip-0-13 riscv64 0.13.72+dfsg.1-1.1 [23.7 kB] Get:268 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:269 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xfonts-utils riscv64 1:7.7+6build2 [92.1 kB] Get:270 http://ftpmaster.internal/ubuntu kinetic-proposed/universe riscv64 lmodern all 2.005-1 [9542 kB] Get:271 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 mpack riscv64 1.6-18 [37.3 kB] Get:272 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:273 http://ftpmaster.internal/ubuntu kinetic/main riscv64 t1utils riscv64 1.41-4build2 [55.5 kB] Get:274 http://ftpmaster.internal/ubuntu kinetic/main riscv64 tcl8.6 riscv64 8.6.12+dfsg-1build1 [14.9 kB] Get:275 http://ftpmaster.internal/ubuntu kinetic/main riscv64 tcl8.6-dev riscv64 8.6.12+dfsg-1build1 [2555 kB] Get:276 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texinfo riscv64 6.8-4build1 [1415 kB] Get:277 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-binaries riscv64 2021.20210626.59705-1build2 [8039 kB] Get:278 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 xdg-utils all 1.1.3-4.1ubuntu2 [62.0 kB] Get:279 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-base all 2021.20220204-1 [21.0 MB] Get:280 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-latex-base all 2021.20220204-1 [1128 kB] Get:281 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-luatex all 2021.20220204-1 [17.4 MB] Get:282 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-plain-generic all 2021.20220204-1 [27.5 MB] Get:283 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-extra-utils all 2021.20220204-1 [52.0 MB] Get:284 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-fonts-extra all 2021.20220204-1 [484 MB] Get:285 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-fonts-recommended all 2021.20220204-1 [4972 kB] Get:286 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:287 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:288 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-latex-recommended all 2021.20220204-1 [14.4 MB] Get:289 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-pictures all 2021.20220204-1 [8720 kB] Get:290 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 texlive-latex-extra all 2021.20220204-1 [13.9 MB] Get:291 http://ftpmaster.internal/ubuntu kinetic/main riscv64 tk8.6 riscv64 8.6.12-1build1 [12.6 kB] Get:292 http://ftpmaster.internal/ubuntu kinetic/main riscv64 tk8.6-dev riscv64 8.6.12-1build1 [1693 kB] Get:293 http://ftpmaster.internal/ubuntu kinetic/main riscv64 x11-xkb-utils riscv64 7.7+7 [164 kB] Get:294 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xfonts-base all 1:1.0.5 [5896 kB] Get:295 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xserver-common all 2:21.1.3-2ubuntu2 [27.5 kB] Get:296 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 xvfb riscv64 2:21.1.3-2ubuntu2 [795 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 963 MB in 2min 21s (6850 kB/s) Selecting previously unselected package libpython3.10-minimal:riscv64. (Reading database ... 13376 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.4-3_riscv64.deb ... Unpacking libpython3.10-minimal:riscv64 (3.10.4-3) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.4.8-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.4-3_riscv64.deb ... Unpacking python3.10-minimal (3.10.4-3) ... Setting up libpython3.10-minimal:riscv64 (3.10.4-3) ... Setting up libexpat1:riscv64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.4-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 13678 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.4-0ubuntu2_riscv64.deb ... Unpacking python3-minimal (3.10.4-0ubuntu2) ... Selecting previously unselected package media-types. 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Setting up libicu71:riscv64 (71.1-2) ... Setting up libxau6:riscv64 (1:1.0.9-1build5) ... Setting up libncurses-dev:riscv64 (6.3+20220423-2) ... Setting up libpsl5:riscv64 (0.21.0-1.2build2) ... Setting up libpixman-1-dev:riscv64 (0.40.0-1build4) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libpcre16-3:riscv64 (2:8.39-14) ... Setting up java-common (0.72build2) ... Setting up libdatrie1:riscv64 (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up mpack (1.6-18) ... Setting up libtexlua53:riscv64 (2021.20210626.59705-1build2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.72.1-1) ... No schema files found: doing nothing. Setting up libglvnd0:riscv64 (1.4.0-1) ... Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build6) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7ubuntu1) ... Setting up libnghttp2-14:riscv64 (1.47.0-1) ... Setting up libmagic1:riscv64 (1:5.41-4) ... Setting up libdeflate0:riscv64 (1.10-2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4ubuntu4) ... Setting up xkb-data (2.35.1-1) ... Setting up liblzo2-2:riscv64 (2.10-2build3) ... Setting up libzzip-0-13:riscv64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.41-4) ... Setting up libreadline-dev:riscv64 (8.1.2-1.2) ... Setting up libffi-dev:riscv64 (3.4.2-4) ... Setting up libpthread-stubs0-dev:riscv64 (0.4-1build2) ... Setting up libjbig0:riscv64 (2.1-3.1build3) ... Setting up libpcre2-16-0:riscv64 (10.40-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg2-3ubuntu1) ... Setting up libasound2-data (1.2.6.1-1ubuntu1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libgraphite2-dev:riscv64 (1.3.14-1build2) ... Setting up libfontenc1:riscv64 (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:riscv64 (10.40-1) ... Setting up libblas3:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libglib2.0-data (2.72.1-1) ... Setting up libexpat1-dev:riscv64 (2.4.8-1) ... Setting up libfreetype6:riscv64 (2.11.1+dfsg-2) ... Setting up libx11-data (2:1.7.5-1) ... Setting up libnspr4:riscv64 (2:4.33-1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libteckit0:riscv64 (2.5.11+ds1-1) ... Setting up bash-completion (1:2.11-6ubuntu1) ... Setting up uuid-dev:riscv64 (2.38-4ubuntu1) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:riscv64 (0.8-5ubuntu5) ... Setting up libdbus-1-3:riscv64 (1.12.20-2ubuntu4) ... Setting up libsigsegv2:riscv64 (2.13-1ubuntu3) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:riscv64 (1.0.8-2ubuntu3.1) ... Setting up t1utils (1.41-4build2) ... Setting up libpcre32-3:riscv64 (2:8.39-14) ... Setting up libtcl8.6:riscv64 (8.6.12+dfsg-1build1) ... Setting up autopoint (0.21-4ubuntu4) ... Setting up icu-devtools (71.1-2) ... Setting up pkg-config (0.29.2-1ubuntu3) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libsepol-dev:riscv64 (3.3-1build1) ... Setting up libpcsclite1:riscv64 (1.9.5-3) ... Setting up ucf (3.0043) ... Setting up libsensors5:riscv64 (1:3.6.0-7ubuntu1) ... Setting up libjpeg-turbo8:riscv64 (2.1.2-0ubuntu1) ... Setting up libglapi-mesa:riscv64 (22.0.1-1ubuntu2) ... Setting up libkpathsea6:riscv64 (2021.20210626.59705-1build2) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg2-3ubuntu1) ... Setting up libssh-4:riscv64 (0.9.6-2build1) ... Setting up libgfortran5:riscv64 (12-20220428-1ubuntu1) ... Setting up libvulkan1:riscv64 (1.3.204.1-2) ... Setting up libwebp7:riscv64 (1.2.2-2) ... Setting up liblzma-dev:riscv64 (5.2.5-2ubuntu1) ... Setting up libgif7:riscv64 (5.2.1-2.4) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu9) ... Setting up libpcre2-posix3:riscv64 (10.40-1) ... Setting up libmd0:riscv64 (1.0.4-1build1) ... Setting up libdatrie-dev:riscv64 (0.2.13-2) ... Setting up libxshmfence1:riscv64 (1.3-1build4) ... Setting up libmime-charset-perl (1.012.2-1) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libasound2:riscv64 (1.2.6.1-1ubuntu1) ... Setting up libncurses5-dev:riscv64 (6.3+20220423-2) ... Setting up libmpdec3:riscv64 (2.5.1-2build2) ... Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:riscv64 (2.7.4-1ubuntu4) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libgirepository-1.0-1:riscv64 (1.72.0-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libbsd0:riscv64 (0.11.6-1) ... Setting up libdeflate-dev:riscv64 (1.10-2) ... Setting up libdrm-common (2.4.110-1ubuntu1) ... Setting up libelf1:riscv64 (0.187-1) ... Setting up libxfont2:riscv64 (1:2.0.5-1build1) ... Setting up libicu-dev:riscv64 (71.1-2) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1ubuntu2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libbrotli-dev:riscv64 (1.0.9-2build6) ... Setting up libblas-dev:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up libsynctex2:riscv64 (2021.20210626.59705-1build2) ... Setting up libbz2-dev:riscv64 (1.0.8-5build1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu10) ... Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libblkid-dev:riscv64 (2.38-4ubuntu1) ... Setting up libpaper1:riscv64 (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:riscv64 (2:1.0.10-1build2) ... Setting up libdw1:riscv64 (0.187-1) ... Setting up libjpeg-turbo8-dev:riscv64 (2.1.2-0ubuntu1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu5) ... Setting up tcl8.6 (8.6.12+dfsg-1build1) ... Setting up liblapack3:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.14-3ubuntu3) ... Setting up gettext (0.21-4ubuntu4) ... Setting up libharfbuzz-icu0:riscv64 (2.7.4-1ubuntu4) ... Setting up libxcb-xfixes0:riscv64 (1.14-3ubuntu3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libxau-dev:riscv64 (1:1.0.9-1build5) ... Setting up libpcre2-dev:riscv64 (10.40-1) ... Setting up libice-dev:riscv64 (2:1.0.10-1build2) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:riscv64 (1.14-3ubuntu3) ... Setting up libselinux1-dev:riscv64 (3.3-1build2) ... Setting up libpcre3-dev:riscv64 (2:8.39-14) ... Setting up libgfortran-11-dev:riscv64 (11.3.0-1ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu5) ... Setting up libfribidi-dev:riscv64 (1.0.8-2ubuntu3.1) ... Setting up libxcb-glx0:riscv64 (1.14-3ubuntu3) ... Setting up tcl8.6-dev:riscv64 (8.6.12+dfsg-1build1) ... Setting up libpng-dev:riscv64 (1.6.37-5) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:riscv64 (0.8-5ubuntu5) ... Setting up libjbig-dev:riscv64 (2.1-3.1build3) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libglib2.0-bin (2.72.1-1) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libnss3:riscv64 (2:3.68.2-0ubuntu1) ... Setting up libxcb-shm0:riscv64 (1.14-3ubuntu3) ... Setting up libharfbuzz-gobject0:riscv64 (2.7.4-1ubuntu4) ... Setting up libpaper-utils (1.1.28build2) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libldap-2.5-0:riscv64 (2.5.11+dfsg-1~exp1ubuntu3) ... Setting up libfreetype-dev:riscv64 (2.11.1+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:riscv64 (1.14-3ubuntu3) ... Setting up libpython3.10-stdlib:riscv64 (3.10.4-3) ... Setting up tex-common (6.17) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libthai0:riscv64 (0.1.29-1build1) ... Setting up libxdmcp-dev:riscv64 (1:1.1.3-0ubuntu5) ... Setting up xfonts-base (1:1.0.5) ... Setting up libptexenc1:riscv64 (2021.20210626.59705-1build2) ... Setting up libxcb-sync1:riscv64 (1.14-3ubuntu3) ... Setting up x11proto-core-dev (2022.1-1) ... Setting up liblapack-dev:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:riscv64 (1.72.0-1) ... Setting up gfortran-11 (11.3.0-1ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up libthai-dev:riscv64 (0.1.29-1build1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-dri2-0:riscv64 (1.14-3ubuntu3) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libdrm2:riscv64 (2.4.110-1ubuntu1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up lmodern (2.005-1) ... Setting up bison (2:3.8.2+dfsg-1build1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:riscv64 (7.83.0-1) ... Setting up libx11-6:riscv64 (2:1.7.5-1) ... Setting up libtiff5:riscv64 (4.3.0-7) ... Setting up libfontconfig1:riscv64 (2.13.1-4.2ubuntu5) ... Setting up libxkbfile1:riscv64 (1:1.1.0-1build3) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu10) ... Setting up libsm6:riscv64 (2:1.2.3-1build2) ... Setting up libavahi-client3:riscv64 (0.8-5ubuntu5) ... Setting up libmount-dev:riscv64 (2.38-4ubuntu1) ... Setting up libxmuu1:riscv64 (2:1.1.3-3) ... Setting up libpython3-stdlib:riscv64 (3.10.4-0ubuntu2) ... Setting up libtiffxx5:riscv64 (4.3.0-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:riscv64 (1.14-3ubuntu3) ... Setting up libx11-xcb1:riscv64 (2:1.7.5-1) ... Setting up fontconfig (2.13.1-4.2ubuntu5) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:riscv64 (2.4.110-1ubuntu1) ... Setting up gir1.2-freedesktop:riscv64 (1.72.0-1) ... Setting up libxcb1-dev:riscv64 (1.14-3ubuntu3) ... Setting up python3.10 (3.10.4-3) ... Setting up libxpm4:riscv64 (1:3.5.12-1build2) ... Setting up libxrender1:riscv64 (1:0.9.10-1build4) ... Setting up libsombok3:riscv64 (2.4.0-2) ... Setting up libfontconfig-dev:riscv64 (2.13.1-4.2ubuntu5) ... Setting up libsm-dev:riscv64 (2:1.2.3-1build2) ... Setting up libdrm-radeon1:riscv64 (2.4.110-1ubuntu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libpango-1.0-0:riscv64 (1.50.7+ds-1) ... Setting up libgl1-mesa-dri:riscv64 (22.0.1-1ubuntu2) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu10) ... Setting up libx11-dev:riscv64 (2:1.7.5-1) ... Setting up libxext6:riscv64 (2:1.3.4-1build1) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gir1.2-harfbuzz-0.0:riscv64 (2.7.4-1ubuntu4) ... Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:riscv64 (1.16.0-5ubuntu2) ... Setting up libfreetype6-dev:riscv64 (2.11.1+dfsg-2) ... Setting up libxxf86vm1:riscv64 (1:1.1.4-1build3) ... Setting up dh-autoreconf (20) ... Setting up libxcb-shm0-dev:riscv64 (1.14-3ubuntu3) ... Setting up libtiff-dev:riscv64 (4.3.0-7) ... Setting up libxfixes3:riscv64 (1:6.0.0-1) ... Setting up libcurl4-openssl-dev:riscv64 (7.83.0-1) ... Setting up libunicode-linebreak-perl (0.0.20190101-1build3) ... Setting up libxrandr2:riscv64 (2:1.5.2-2) ... Setting up libxcb-render0-dev:riscv64 (1.14-3ubuntu3) ... Setting up libxt6:riscv64 (1:1.2.1-1) ... Setting up texinfo (6.8-4build1) ... Running mktexlsr. This may take some time. ... done. Setting up libxext-dev:riscv64 (2:1.3.4-1build1) ... Setting up libcups2:riscv64 (2.4.1op1-1ubuntu4) ... Setting up xauth (1:1.1.1-1) ... Setting up libcairo-gobject2:riscv64 (1.16.0-5ubuntu2) ... Setting up libxss1:riscv64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:riscv64 (1.50.7+ds-1) ... Setting up python3-lib2to3 (3.10.4-0ubuntu1) ... Setting up libxrender-dev:riscv64 (1:0.9.10-1build4) ... Setting up libpangocairo-1.0-0:riscv64 (1.50.7+ds-1) ... Setting up python3-distutils (3.10.4-0ubuntu1) ... Setting up libcairo-script-interpreter2:riscv64 (1.16.0-5ubuntu2) ... Setting up libglib2.0-dev-bin (2.72.1-1) ... Setting up libxft2:riscv64 (2.3.4-1) ... Setting up libxmu6:riscv64 (2:1.1.3-3) ... Setting up libfontconfig1-dev:riscv64 (2.13.1-4.2ubuntu5) ... Setting up libglx-mesa0:riscv64 (22.0.1-1ubuntu2) ... Setting up libpangoxft-1.0-0:riscv64 (1.50.7+ds-1) ... Setting up libxi6:riscv64 (2:1.8-1build1) ... Setting up libglx0:riscv64 (1.4.0-1) ... Setting up libxtst6:riscv64 (2:1.2.3-1build4) ... Setting up libtk8.6:riscv64 (8.6.12-1build1) ... Setting up pango1.0-tools (1.50.7+ds-1) ... Setting up libtiff5-dev:riscv64 (4.3.0-7) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libxaw7:riscv64 (2:1.0.14-1) ... Setting up libxss-dev:riscv64 (1:1.2.3-1build2) ... Setting up gir1.2-pango-1.0:riscv64 (1.50.7+ds-1) ... Setting up libgl1:riscv64 (1.4.0-1) ... Setting up libglib2.0-dev:riscv64 (2.72.1-1) ... Setting up libxt-dev:riscv64 (1:1.2.1-1) ... Setting up texlive-binaries (2021.20210626.59705-1build2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libcairo2-dev:riscv64 (1.16.0-5ubuntu2) ... Setting up texlive-base (2021.20220204-1) ... /usr/bin/ucfr /usr/bin/ucfr /usr/bin/ucfr /usr/bin/ucfr tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libxft-dev:riscv64 (2.3.4-1) ... Setting up tk8.6 (8.6.12-1build1) ... Setting up libharfbuzz-dev:riscv64 (2.7.4-1ubuntu4) ... Setting up texlive-luatex (2021.20220204-1) ... Setting up x11-xkb-utils (7.7+7) ... Setting up texlive-plain-generic (2021.20220204-1) ... Setting up texlive-latex-base (2021.20220204-1) ... Setting up texlive-extra-utils (2021.20220204-1) ... Setting up texlive-fonts-extra (2021.20220204-1) ... Setting up libpango1.0-dev:riscv64 (1.50.7+ds-1) ... Setting up texlive-latex-recommended (2021.20220204-1) ... Setting up texlive-pictures (2021.20220204-1) ... Setting up tk8.6-dev:riscv64 (8.6.12-1build1) ... Setting up texlive-fonts-recommended (2021.20220204-1) ... Setting up xserver-common (2:21.1.3-2ubuntu2) ... Setting up xvfb (2:21.1.3-2ubuntu2) ... Setting up texlive-latex-extra (2021.20220204-1) ... Setting up default-jre-headless (2:1.11-72build2) ... Setting up openjdk-11-jre-headless:riscv64 (11.0.15+10-0ubuntu0.22.04.1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:riscv64 (11.0.15+10-0ubuntu0.22.04.1) ... Setting up openjdk-11-jdk-headless:riscv64 (11.0.15+10-0ubuntu0.22.04.1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode Setting up default-jre (2:1.11-72build2) ... Setting up default-jdk-headless (2:1.11-72build2) ... Setting up openjdk-11-jdk:riscv64 (11.0.15+10-0ubuntu0.22.04.1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Certum_EC-384_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Certigna.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:GTS_Root_R2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:AffirmTrust_Networking.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:ISRG_Root_X1.pem Adding debian:ACCVRAIZ1.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsítvány.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Certigna_Root_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:GTS_Root_R1.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:SecureTrust_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Izenpe.com.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:GTS_Root_R3.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:GTS_Root_R4.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem done. Setting up default-jdk (2:1.11-72build2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.38-4ubuntu1 dpkg-dev_1.21.1ubuntu2 g++-11_11.3.0-1ubuntu1 gcc-11_11.3.0-1ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-1ubuntu1 libstdc++6_12-20220428-1ubuntu1 linux-libc-dev_5.15.0-28.29 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu2 apt_2.4.5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-4ubuntu4 autotools-dev_20220109.1 base-files_12ubuntu5 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 bash-completion_1:2.11-6ubuntu1 binutils_2.38-4ubuntu1 binutils-common_2.38-4ubuntu1 binutils-riscv64-linux-gnu_2.38-4ubuntu1 bison_2:3.8.2+dfsg-1build1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 ca-certificates-java_20190909 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-1ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3build1 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.5-1ubuntu2 debugedit_1:5.0-4build1 default-jdk_2:1.11-72build2 default-jdk-headless_2:1.11-72build2 default-jre_2:1.11-72build2 default-jre-headless_2:1.11-72build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.1ubuntu2 dpkg-dev_1.21.1ubuntu2 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu1 fakeroot_1.28-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 fontconfig_2.13.1-4.2ubuntu5 fontconfig-config_2.13.1-4.2ubuntu5 fonts-dejavu-core_2.37-2build1 fonts-lmodern_2.005-1 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-1ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-1ubuntu1 gcc-11-base_11.3.0-1ubuntu1 gcc-12-base_12-20220428-1ubuntu1 gettext_0.21-4ubuntu4 gettext-base_0.21-4ubuntu4 gfortran_4:11.2.0-1ubuntu1 gfortran-11_11.3.0-1ubuntu1 gir1.2-freedesktop_1.72.0-1 gir1.2-glib-2.0_1.72.0-1 gir1.2-harfbuzz-0.0_2.7.4-1ubuntu4 gir1.2-pango-1.0_1.50.7+ds-1 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 icu-devtools_71.1-2 init_1.62 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 java-common_0.72build2 libacl1_2.3.1-1 libapache-pom-java_18-1 libapparmor1_3.0.4-2ubuntu2 libapt-pkg6.0_2.4.5 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-1ubuntu1 libasound2_1.2.6.1-1ubuntu1 libasound2-data_1.2.6.1-1ubuntu1 libassuan0_2.5.5-3 libatomic1_12-20220428-1ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libavahi-client3_0.8-5ubuntu5 libavahi-common-data_0.8-5ubuntu5 libavahi-common3_0.8-5ubuntu5 libbinutils_2.38-4ubuntu1 libblas-dev_3.10.0-2ubuntu1 libblas3_3.10.0-2ubuntu1 libblkid-dev_2.38-4ubuntu1 libblkid1_2.38-4ubuntu1 libbrotli-dev_1.0.9-2build6 libbrotli1_1.0.9-2build6 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcairo-gobject2_1.16.0-5ubuntu2 libcairo-script-interpreter2_1.16.0-5ubuntu2 libcairo2_1.16.0-5ubuntu2 libcairo2-dev_1.16.0-5ubuntu2 libcap-ng0_0.7.9-2.2build3 libcap2_1:2.44-1build3 libcc1-0_12-20220428-1ubuntu1 libcom-err2_1.46.5-2ubuntu1 libcommons-logging-java_1.2-3 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38-4ubuntu1 libctf0_2.38-4ubuntu1 libcups2_2.4.1op1-1ubuntu4 libcurl4_7.83.0-1 libcurl4-openssl-dev_7.83.0-1 libdatrie-dev_0.2.13-2 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.8ubuntu3 libdbus-1-3_1.12.20-2ubuntu4 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdeflate-dev_1.10-2 libdeflate0_1.10-2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.1ubuntu2 libdrm-common_2.4.110-1ubuntu1 libdrm-nouveau2_2.4.110-1ubuntu1 libdrm-radeon1_2.4.110-1ubuntu1 libdrm2_2.4.110-1ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2ubuntu1 libfakeroot_1.28-1ubuntu1 libffi-dev_3.4.2-4 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontbox-java_1:1.8.16-2 libfontconfig-dev_2.13.1-4.2ubuntu5 libfontconfig1_2.13.1-4.2ubuntu5 libfontconfig1-dev_2.13.1-4.2ubuntu5 libfontenc1_1:1.1.4-1build3 libfreetype-dev_2.11.1+dfsg-2 libfreetype6_2.11.1+dfsg-2 libfreetype6-dev_2.11.1+dfsg-2 libfribidi-dev_1.0.8-2ubuntu3.1 libfribidi0_1.0.8-2ubuntu3.1 libgcc-11-dev_11.3.0-1ubuntu1 libgcc-s1_12-20220428-1ubuntu1 libgcrypt20_1.9.4-3ubuntu3 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r-base_4.2.0-1ubuntu1~ppa1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23722095 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23722095 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23722095 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.2.0-1ubuntu1~ppa1 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files debian/files* core debian/substvars rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build-arch *** configure *** #automake #autoconf dh_testdir R_SHELL=/bin/bash \ mkdir_p="/bin/mkdir -p" \ MKDIR_P="/bin/mkdir -p" \ R_TEXI2DVICMD=emulation \ R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_BZIPCMD=/bin/bzip2 \ R_GZIPCMD="/bin/gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ TAR=/bin/tar \ LIBnn=lib \ AWK=/usr/bin/awk \ DD=/bin/dd \ GREP=/bin/grep \ FGREP="/bin/grep -F" \ EGREP="/bin/grep -E" \ SED=/bin/sed \ GETWD="/bin/pwd" \ CC=gcc \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ FCFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ CPPFLAGS= \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-long-double \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build riscv64-linux-gnu checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for /bin/tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip -n checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ 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(cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... 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checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/riscv64-linux-gnu/11 -L/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lgfortran -lm checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/riscv64-linux-gnu/11 -L/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking for g++ -std=gnu++14 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking 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checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... -ltirpc checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes configure: searching for an external BLAS configure: searching for BLAS in default libraries checking for dgemm_... no configure: searching for OpenBLAS checking for sgemm_ in -lopenblas... no configure: searching for ATLAS checking for ATL_xerbla in -latlas... no configure: searching for PhiPACK checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no configure: searching for IBM ESSL checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no configure: searching for generic BLAS library checking for dgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... no checking for dpstrf_ in -llapack... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... no checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... yes checking for tirpc/rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.83.0 checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for riscv64-unknown-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong Default C++ compiler: g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 C++11 compiler: g++ -std=gnu++11 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 C++14 compiler: g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 C++17 compiler: g++ -std=gnu++17 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 C++20 compiler: g++ -std=gnu++20 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling Capabilities skipped: Options not enabled: shared BLAS Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ FCFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ CC=gcc \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="/bin/gzip -n" \ R make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' creating src/scripts/R.fe make[4]: Entering directory '/<>/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' mkdir -p -- ../../include make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/<>/src/appl' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dchdc.f -o dchdc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpoco.f -o dpoco.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpodi.f -o dpodi.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpofa.f -o dpofa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dposl.f -o dposl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrls.f -o dqrls.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dtrco.f -o dtrco.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/<>/src/nmath' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making clippath.d from clippath.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making mask.d from mask.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/<>/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n make[5]: Entering directory '/<>/src/main' mkdir -p -- /<>/bin/exec mkdir -p -- /<>/lib make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/<>/src/main' make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/<>/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[6]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/modules make[6]: Leaving directory '/<>/src/modules/internet' make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/<>/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm make[6]: Entering directory '/<>/src/modules/lapack' make[6]: Leaving directory '/<>/src/modules/lapack' make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/<>/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- ../../library make[4]: Entering directory '/<>/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory '/<>/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tools' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/<>/src/library/compiler' mkdir -p -- ../../../library/compiler/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' byte-compiling package 'compiler' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' byte-compiling package 'base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' byte-compiling package 'tools' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/<>/src/library/utils' mkdir -p -- ../../../library/utils/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c making hashtab.d from hashtab.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' byte-compiling package 'utils' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/<>/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making group.d from group.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' byte-compiling package 'grDevices' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/<>/src/library/graphics' mkdir -p -- ../../../library/graphics/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' byte-compiling package 'graphics' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory '/<>/src/library/stats' mkdir -p -- ../../../library/stats/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c bvalue.f -o bvalue.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c bvalus.f -o bvalus.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c loessf.f -o loessf.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c ppr.f -o ppr.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c qsbart.f -o qsbart.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c sgram.f -o sgram.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c sinerp.f -o sinerp.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c stxwx.f -o stxwx.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c hclust.f -o hclust.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c kmns.f -o kmns.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c eureka.f -o eureka.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c stl.f -o stl.o gfortran -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c portsrc.f -o portsrc.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' byte-compiling package 'stats' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/<>/src/library/datasets' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/datasets' mkdir -p -- ../../../library/datasets/data Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/<>/src/library/methods' mkdir -p -- ../../../library/methods/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' byte-compiling package 'methods' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory initializing class and method definitions ... done make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/<>/src/library/grid' mkdir -p -- ../../../library/grid/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making path.d from path.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' byte-compiling package 'grid' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/<>/src/library/splines' mkdir -p -- ../../../library/splines/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' byte-compiling package 'splines' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/<>/src/library/stats4' mkdir -p -- ../../../library/stats4/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' byte-compiling package 'stats4' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/<>/src/library/tcltk' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory mkdir -p -- ../../../library/tcltk/exec Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -L/usr/lib/riscv64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/<>/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' byte-compiling package 'tcltk' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/<>/src/library/parallel' mkdir -p -- ../../../library/parallel/R Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' byte-compiling package 'parallel' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory installing parsed NAMESPACE files Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[1]: Leaving directory '/<>' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ R_GZIPCMD="/bin/gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/<>/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' Copying source files make[2]: Entering directory '/<>/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. 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fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o 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install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tools' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/datasets' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory installing parsed NAMESPACE files Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[2]: Entering directory '/<>/doc' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory creating doc/NEWS Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory creating doc/NEWS.pdf Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Entering directory '/<>/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory '/<>/doc/html' make[4]: Leaving directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' installing parsed Rd make[4]: Entering directory '/<>/src/library' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory base Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory stats Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory utils Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory methods Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory graphics Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory grDevices Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory datasets Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory grid Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory tools Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory tcltk Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory splines Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory stats4 Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory compiler Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory parallel make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' building/updating package metadata ... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' writing package indices make[4]: Entering directory '/<>/src/library' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src/library' make[1]: Leaving directory '/<>' /usr/bin/make javaconf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tools' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/datasets' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[4]: Leaving directory '/<>/src/library/base' Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory installing parsed NAMESPACE files Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' configuring Java ... Java interpreter : /usr/lib/jvm/default-java/bin/java Java version : 11.0.15 Java home path : /usr/lib/jvm/default-java Java compiler : /usr/lib/jvm/default-java/bin/javac Java headers gen.: Java archive tool: /usr/lib/jvm/default-java/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Entering directory '/tmp/Rjavareconf.xvo3nm' gcc -I"/<>/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o gcc -shared -L/<>/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/<>/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.xvo3nm' JAVA_HOME : /usr/lib/jvm/default-java Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /<> Done. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' touch make-arch-stamp fakeroot debian/rules binary-arch *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /<>/debian/r-base-core /usr/bin/make DESTDIR=/<>/debian/r-base-core install make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' installing doc ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc mkdir -p -- /<>/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/<>/doc/html' installing doc/html ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' installing doc/manual ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' installing share ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/share mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/R mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/java mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/make mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- /<>/debian/r-base-core/usr/share/R/include/R_ext make[4]: 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make[3]: Entering directory '/<>/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /<>/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tests' make[1]: Leaving directory '/<>' (cd src/unix; \ rm -vf Rscript /<>/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/<>/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/<>/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/<>/src/unix' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /<>/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/<>/debian/r-base-core/usr/bin/Rscript' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings /<>/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/<>/debian/r-base-core install ) make[1]: Entering directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' /<>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/<>/src/nmath/standalone' chmod a+x /<>/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /<>/debian/r-base-core/usr/lib/R/COPYING removed '/<>/debian/r-base-core/usr/lib/R/COPYING' (cd /<>/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /<>/debian/r-base-core/usr/share/R/doc/COPYING removed '/<>/debian/r-base-core/usr/share/R/doc/COPYING' (cd /<>/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) (cd /<>/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html make prefix=/<>/debian/r-base-core/usr \ rdocdir=/<>/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' creating doc/manual/version.tex Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'base' ... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Converting parsed Rd's to LaTeX ........................................... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'tools' ... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Converting parsed Rd's to LaTeX ...... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'utils' ... 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Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Converting parsed Rd's to LaTeX ........ Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'methods' ... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Converting parsed Rd's to LaTeX ........ Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'grid' ... 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Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Converting parsed Rd's to LaTeX . Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'tcltk' ... Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Converting parsed Rd's to LaTeX . Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory Warning message: In normalizePath("~") : path[1]="/sbuild-nonexistent": No such file or directory collecting LaTeX docs for package 'compiler' ... 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This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 388. 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] Underfull \hbox (badness 6252) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 328--331 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 567--573 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1578--1584 [26] [27] [28] [29] [30] [31] [32] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2056--2056 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Underfull \hbox (badness 1721) in paragraph at lines 2720--2724 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 3901--3903 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 2521) in paragraph at lines 5196--5198 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6387--6387 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] Underfull \hbox (badness 1303) in paragraph at lines 7281--7288 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [113] Underfull \hbox (badness 2111) in paragraph at lines 7292--7297 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] [124] Underfull \hbox (badness 2096) in paragraph at lines 7962--7966 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [125] Underfull \hbox (badness 2351) in paragraph at lines 8076--8079 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] [130] Underfull \hbox (badness 4479) in paragraph at lines 8393--8404 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1629) in paragraph at lines 8845--8857 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 8845--8857 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Underfull \hbox (badness 2744) in paragraph at lines 11903--11905 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] Underfull \hbox (badness 2253) in paragraph at lines 14094--14096 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [216] [217] Underfull \hbox (badness 1565) in paragraph at lines 14170--14174 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and Underfull \hbox (badness 4927) in paragraph at lines 14214--14216 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [218] [219] Underfull \hbox (badness 3148) in paragraph at lines 14316--14321 [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [ ][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file. show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co n-sider [220] Underfull \hbox (badness 1466) in paragraph at lines 14363--14366 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [221] [222] Underfull \hbox (badness 10000) in paragraph at lines 14494--14498 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14505--14508 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [223] [224] [225] [226] Underfull \hbox (badness 3965) in paragraph at lines 14802--14806 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Underfull \hbox (badness 4429) in paragraph at lines 15583--15586 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [240] Underfull \hbox (badness 10000) in paragraph at lines 15689--15691 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [241] Underfull \hbox (badness 2035) in paragraph at lines 15762--15766 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] Underfull \hbox (badness 2452) in paragraph at lines 16374--16378 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16374--16378 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [252] [253] [254] Underfull \hbox (badness 1092) in paragraph at lines 16547--16552 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [255] [256] [257] Underfull \hbox (badness 6741) in paragraph at lines 16800--16804 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \vbox (badness 10000) has occurred while \output is active [269] Underfull \vbox (badness 10000) has occurred while \output is active [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \hbox (badness 1478) in paragraph at lines 18252--18255 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [280] [281] [282] [283] Underfull \hbox (badness 10000) in paragraph at lines 18524--18526 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 18530--18539 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] Underfull \hbox (badness 1442) in paragraph at lines 19138--19140 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [294] [295] [296] [297] [298] Underfull \hbox (badness 10000) in paragraph at lines 19469--19475 [299] [300] [301] [302] Underfull \hbox (badness 1248) in paragraph at lines 19714--19717 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [303] [304] [305] [306] Underfull \hbox (badness 4739) in paragraph at lines 19977--19979 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [307] [308] [309] [310] Underfull \hbox (badness 1603) in paragraph at lines 20204--20207 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] [323] Underfull \hbox (badness 2469) in paragraph at lines 21057--21062 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [324] [325] Underfull \hbox (badness 1675) in paragraph at lines 21145--21154 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21155--21170 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21205--21208 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21205--21208 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [326] [327] Underfull \hbox (badness 1014) in paragraph at lines 21339--21344 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 1264) in paragraph at lines 22188--22196 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [341] Underfull \hbox (badness 4441) in paragraph at lines 22222--22225 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] Underfull \hbox (badness 5231) in paragraph at lines 23019--23021 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] Underfull \hbox (badness 10000) in paragraph at lines 24112--24118 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24112--24118 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [371] [372] [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 2790) in paragraph at lines 24609--24612 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24609--24612 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [379] [380] [381] [382] [383] Underfull \hbox (badness 1194) in paragraph at lines 24932--24935 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [384] [385] [386] Underfull \hbox (badness 2368) in paragraph at lines 25139--25145 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [387] [388] [389] [390] [391] [392] Underfull \hbox (badness 10000) in paragraph at lines 25529--25532 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] Underfull \hbox (badness 10000) in paragraph at lines 26150--26152 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1881) in paragraph at lines 27045--27048 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27069--27071 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [416] [417] Underfull \hbox (badness 2142) in paragraph at lines 27210--27214 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 27267--27272 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [418] [419] [420] [421] Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27574--27577 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt m/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 27600--27602 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [422] Underfull \hbox (badness 10000) in paragraph at lines 27642--27647 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27648--27659 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27648--27659 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 27660--27663 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [423] [424] [425] [426] [427] Underfull \vbox (badness 3803) has occurred while \output is active [428] Underfull \hbox (badness 10000) in paragraph at lines 28060--28064 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [429] [430] Underfull \hbox (badness 10000) in paragraph at lines 28207--28210 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [431] Underfull \hbox (badness 7925) in paragraph at lines 28288--28292 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 28288--28292 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 28293--28302 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] Underfull \hbox (badness 2726) in paragraph at lines 29289--29292 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \hbox (badness 1603) in paragraph at lines 30039--30042 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] Underfull \hbox (badness 1533) in paragraph at lines 31076--31079 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [475] [476] [477] Underfull \hbox (badness 1163) in paragraph at lines 31239--31250 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] Underfull \hbox (badness 10000) in paragraph at lines 32902--32906 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32902--32906 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32923--32925 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32926--32930 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [504] [505] Underfull \vbox (badness 10000) has occurred while \output is active [506] [507] [508] [509] [510] [511] [512] [513] Underfull \hbox (badness 1655) in paragraph at lines 33520--33522 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \hbox (badness 2261) in paragraph at lines 34726--34731 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 35846--35857 \T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars ing-[]c-[]command-[]line-[]arguments ? [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] Underfull \hbox (badness 10000) in paragraph at lines 37377--37379 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [574] Underfull \vbox (badness 10000) has occurred while \output is active [575] [576] [577] [578] [579] [580] Underfull \hbox (badness 2913) in paragraph at lines 37797--37801 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [581] [582] [583] Underfull \hbox (badness 1072) in paragraph at lines 38043--38047 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 38048--38052 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', [584] Underfull \hbox (badness 10000) in paragraph at lines 38088--38094 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 38088--38094 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 38088--38094 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 38103--38110 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [585] [586] [587] Underfull \hbox (badness 2644) in paragraph at lines 38338--38342 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [588] [589] [590] Underfull \hbox (badness 1142) in paragraph at lines 38491--38497 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] Underfull \hbox (badness 1158) in paragraph at lines 39792--39794 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [612] [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 1137) in paragraph at lines 40382--40388 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails [621] Underfull \hbox (badness 4967) in paragraph at lines 40401--40406 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [622] [623] Underfull \hbox (badness 1616) in paragraph at lines 40521--40526 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [624] [625] [626] [627] [628] [629] [630] [631] Underfull \hbox (badness 1472) in paragraph at lines 41068--41071 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 10000) in paragraph at lines 41994--41998 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/ m/n/10 length(bin) > [647] [648] [649] [650] Underfull \hbox (badness 10000) in paragraph at lines 42245--42248 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [651] [652] [653] Underfull \hbox (badness 10000) in paragraph at lines 42429--42433 [][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [654] [655] [656] [657] [658] [659] [660] [661] [662] Underfull \hbox (badness 10000) in paragraph at lines 43055--43058 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [663] [664] [665] [666] [667] Underfull \vbox (badness 3803) has occurred while \output is active [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 1990) in paragraph at lines 43977--43985 []\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43977--43985 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] Underfull \hbox (badness 2452) in paragraph at lines 44946--44952 [][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 3668) in paragraph at lines 45344--45346 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [697] [698] Underfull \hbox (badness 2401) in paragraph at lines 45474--45478 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [699] [700] [701] Underfull \hbox (badness 2111) in paragraph at lines 45682--45687 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [702] [703] [704] [705] Underfull \hbox (badness 4001) in paragraph at lines 45928--45930 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [706] [707] [708] [709] [710] [711] Underfull \hbox (badness 5417) in paragraph at lines 46293--46297 []\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [712] Underfull \hbox (badness 10000) in paragraph at lines 46354--46358 []\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [713]) (./compiler-pkg.tex [714] Chapter 2. [715] [716] [717] [718]) (./datasets-pkg.tex Chapter 3. [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801]) (./grDevices-pkg.tex [802] Chapter 4. [803] [804] [805] [806] [807] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\ T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/ ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p tm/m/n/10 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i-fied as [818] [819] [820] [821] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [822] [823] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [824] [825] [826] [827] [828] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [ ][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T 1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1624--1628 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [829] [830] [831] [832] [833] [834] [835] Underfull \hbox (badness 1325) in paragraph at lines 2038--2048 []\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1 0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10 , [836] Underfull \hbox (badness 10000) in paragraph at lines 2150--2152 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [837] [838] [839] Underfull \hbox (badness 6758) in paragraph at lines 2329--2332 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 10000) in paragraph at lines 2940--2941 [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] Underfull \vbox (badness 3803) has occurred while \output is active [862] [863] [864] [865] Underfull \vbox (badness 3803) has occurred while \output is active [866] Underfull \hbox (badness 10000) in paragraph at lines 4016--4019 []\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10 give a C in-te-ger for-mat such as [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] Underfull \vbox (badness 3803) has occurred while \output is active [879] [880] Underfull \hbox (badness 1584) in paragraph at lines 4907--4909 []\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/ zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4911--4918 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [881] [882] [883] [884] Underfull \hbox (badness 1377) in paragraph at lines 5217--5222 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [885] Underfull \hbox (badness 1418) in paragraph at lines 5293--5300 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\ T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m /n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet ica-Narrow"[]\T1/ptm/m/n/10 , [886] Underfull \hbox (badness 1755) in paragraph at lines 5311--5313 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [887] Underfull \hbox (badness 1377) in paragraph at lines 5422--5427 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [888] Underfull \hbox (badness 7344) in paragraph at lines 5491--5493 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [889] Underfull \vbox (badness 3803) has occurred while \output is active [890] Underfull \hbox (badness 2035) in paragraph at lines 5629--5638 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5629--5638 \T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na rrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5629--5638 []\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi 4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m /n/10 , [891] [892] Underfull \hbox (badness 10000) in paragraph at lines 5697--5699 []\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [893] [894] Underfull \hbox (badness 1546) in paragraph at lines 5841--5849 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , [] \T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] [902] Underfull \hbox (badness 10000) in paragraph at lines 6379--6382 []\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [903] [904] Underfull \vbox (badness 3803) has occurred while \output is active [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] Underfull \hbox (badness 1189) in paragraph at lines 7208--7210 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [917] Underfull \hbox (badness 10000) in paragraph at lines 7313--7315 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [918] [919] [920] [921] [922] Underfull \hbox (badness 3780) in paragraph at lines 7627--7633 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n /10 "AvantGarde"[]\T1/ptm/m/n/10 , [923] [924] [925] [926] [927] [928]) (./graphics-pkg.tex Chapter 5. [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Overfull \hbox (12.71341pt too wide) in paragraph at lines 983--983 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [945] [946] [947] [948] [949] [950] Underfull \hbox (badness 4634) in paragraph at lines 1357--1360 [][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p tm/m/n/10 , [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] Underfull \hbox (badness 1728) in paragraph at lines 2335--2337 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [968] Underfull \hbox (badness 1009) in paragraph at lines 2428--2435 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] Underfull \vbox (badness 10000) has occurred while \output is active [992] Underfull \vbox (badness 10000) has occurred while \output is active [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] Underfull \hbox (badness 3229) in paragraph at lines 4652--4657 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1005] [1006] [1007] [1008] [1009] Underfull \hbox (badness 1107) in paragraph at lines 5081--5087 []\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch) , [1010] [1011] Underfull \hbox (badness 10000) in paragraph at lines 5210--5213 [1012 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5271--5273 Underfull \vbox (badness 10000) has occurred while \output is active [1013] [1014 >/library/graphics/help/figures//oma.pdf >] [1015] [1016] Underfull \vbox (badness 3803) has occurred while \output is active [1017] [1018] [1019] [1020] [1021] [1022] [1023]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.plot}) has been already used, duplicate ignored \relax l.5943 \aliasA{plot}{plot.default}{plot} [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6848--6849 [][] [1038 >/library/graphics/help/figures//pch.pdf >] [1039] Underfull \vbox (badness 3803) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 4954) in paragraph at lines 8936--8938 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /n/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 8938--8940 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par (c("font.lab", "cex.lab", [1073]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.9018 \HeaderA{units}{Graphical Units}{units} [1074] [1075] [1076] [1077]) (./grid-pkg.tex [1078] Chapter 6. [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 2680) in paragraph at lines 550--553 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c u-la-tion of [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \hbox (badness 4279) in paragraph at lines 1187--1196 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 , [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] Underfull \hbox (badness 10000) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] Underfull \vbox (badness 10000) has occurred while \output is active [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] Underfull \hbox (badness 1067) in paragraph at lines 4761--4764 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1160] [1161] [1162] [1163] [1164] [1165] Underfull \hbox (badness 7256) in paragraph at lines 5112--5114 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 2142) in paragraph at lines 5561--5565 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1 0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1173] [1174] Underfull \hbox (badness 4699) in paragraph at lines 5632--5637 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206]) (./methods-pkg.tex Chapter 7. [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] Underfull \vbox (badness 10000) has occurred while \output is active [1215] Underfull \vbox (badness 10000) has occurred while \output is active [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1 0 "package"[]\T1/ptm/m/n/10 , also of class [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m /n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1235] [1236] [1237] Underfull \hbox (badness 2213) in paragraph at lines 2213--2218 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/n/10 where = [1238] [1239] [1240] [1241] [1242] Underfull \hbox (badness 10000) in paragraph at lines 2573--2576 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class [1243] [1244] Underfull \hbox (badness 1132) in paragraph at lines 2713--2717 []\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4 /m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl ot of the re-turned re-sult is in [1245] Underfull \hbox (badness 1033) in paragraph at lines 2745--2750 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 re-stores the [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 1102) in paragraph at lines 3302--3304 []\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1253] [1254] [1255] [1256] [1257] [1258] Underfull \hbox (badness 10000) in paragraph at lines 3641--3650 []\T1/ptm/m/n/10 The [1259] Underfull \hbox (badness 10000) in paragraph at lines 3761--3762 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = "numeric", [1260] Underfull \hbox (badness 10000) in paragraph at lines 3845--3846 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 1769) in paragraph at lines 4476--4482 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4476--4482 []\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [] [][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use d by [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \vbox (badness 10000) has occurred while \output is active [1281] [1282] [1283] Underfull \hbox (badness 4036) in paragraph at lines 5445--5448 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/ n/10 the method to use in re-sponse to a [1284] [1285] Underfull \hbox (badness 3803) in paragraph at lines 5520--5522 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1286] [1287] [1288] Underfull \hbox (badness 1087) in paragraph at lines 5752--5757 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] Underfull \hbox (badness 1675) in paragraph at lines 6459--6465 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1298] [1299] [1300] [1301] Underfull \vbox (badness 10000) has occurred while \output is active [1302] [1303] [1304]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6981 \aliasA{S4}{S3Part}{S4} [1305] [1306] [1307]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7237 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7239 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7240 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7242 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7243 \aliasA{Summary}{S4groupGeneric}{Summary} [1308] Underfull \hbox (badness 2050) in paragraph at lines 7304--7308 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1309] [1310] [1311] Underfull \hbox (badness 1286) in paragraph at lines 7492--7494 []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t yp-i-cally [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] Underfull \vbox (badness 10000) has occurred while \output is active [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 1852) in paragraph at lines 10572--10576 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1354] [1355] [1356] [1357]) (./parallel-pkg.tex [1358] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1359] [1360] [1361] [1362] [1363] Underfull \hbox (badness 1320) in paragraph at lines 301--304 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] Underfull \hbox (badness 3386) in paragraph at lines 1402--1405 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the [1381] [1382] [1383]) (./splines-pkg.tex [1384] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400]) (./stats-pkg.tex Chapter 10. [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] Underfull \hbox (badness 1412) in paragraph at lines 887--889 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 2503) in paragraph at lines 1369--1372 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \hbox (badness 2503) in paragraph at lines 3530--3533 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] Underfull \hbox (badness 3989) in paragraph at lines 4787--4794 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] Underfull \hbox (badness 2556) in paragraph at lines 5424--5427 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[] \T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi lter"[]\T1/ptm/m/n/10 . For [1487] [1488] [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 2503) in paragraph at lines 5838--5842 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 7081) in paragraph at lines 6632--6635 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6636--6638 []\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] Underfull \hbox (badness 10000) in paragraph at lines 7493--7496 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \vbox (badness 10000) has occurred while \output is active [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 2626) in paragraph at lines 9172--9175 []\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1547] [1548] Underfull \hbox (badness 2503) in paragraph at lines 9279--9283 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] Underfull \hbox (badness 4518) in paragraph at lines 10631--10636 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1570] [1571] [1572] [1573] [1574] Underfull \hbox (badness 2142) in paragraph at lines 10992--10995 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11011--11014 []\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-er-a-tion. Hence, [1575] Underfull \hbox (badness 1708) in paragraph at lines 11073--11077 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1576] [1577] [1578] [1579] [1580] [1581] Underfull \hbox (badness 1694) in paragraph at lines 11469--11472 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11950 \aliasA{hat}{influence.measures}{hat} [1590] [1591] Underfull \hbox (badness 1484) in paragraph at lines 12092--12094 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 10000) in paragraph at lines 12694--12696 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit = [1602] [1603] [1604] [1605] [1606] [1607] Underfull \hbox (badness 2894) in paragraph at lines 13030--13034 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 1496) in paragraph at lines 13444--13450 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1614] [1615] [1616] [1617] [1618] [1619] [1620] Underfull \hbox (badness 4518) in paragraph at lines 13842--13847 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 4518) in paragraph at lines 14503--14508 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1631] [1632] Underfull \hbox (badness 6412) in paragraph at lines 14641--14645 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte rpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14648--14650 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] Underfull \hbox (badness 2503) in paragraph at lines 15724--15728 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1651] [1652] Underfull \vbox (badness 10000) has occurred while \output is active [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 10000) in paragraph at lines 16237--16243 []\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/ 10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16237--16243 []\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/ ptm/m/n/10 sums any terms [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 1158) in paragraph at lines 17888--17891 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1 /ptm/m/n/10 as the data ar-gu-ment. The ac- [1686] [1687] Underfull \vbox (badness 3803) has occurred while \output is active [1688] Underfull \vbox (badness 10000) has occurred while \output is active [1689] Underfull \vbox (badness 10000) has occurred while \output is active [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] Underfull \hbox (badness 1377) in paragraph at lines 18915--18920 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18920--18923 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18933--18937 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18933--18937 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18941--18945 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T 1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1 0 "SANN" []\T1/ptm/m/n/10 meth-ods if [1704] [1705] [1706] Underfull \vbox (badness 10000) has occurred while \output is active [1707] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19166--19166 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19169--19169 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1708] [1709] [1710] [1711] [1712] [1713] [1714] Underfull \hbox (badness 1337) in paragraph at lines 19628--19631 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] Underfull \hbox (badness 10000) in paragraph at lines 20099--20105 \T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty = cook.lty, col = cook.col, text.col [1724] [1725] [1726] [1727] [1728] Underfull \hbox (badness 1194) in paragraph at lines 20429--20432 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1729] [1730] [1731] [1732] [1733] [1734] Underfull \hbox (badness 2503) in paragraph at lines 20808--20811 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1735] Underfull \hbox (badness 3919) in paragraph at lines 20835--20837 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] Underfull \hbox (badness 10000) in paragraph at lines 21913--21919 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 23270--23276 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 1436) in paragraph at lines 23695--23698 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2, [1784] Underfull \hbox (badness 10000) in paragraph at lines 23836--23837 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 1824) in paragraph at lines 24808--24814 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f irst re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24808--24814 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1801] Underfull \hbox (badness 10000) in paragraph at lines 24829--24832 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] = [1802] Underfull \vbox (badness 3803) has occurred while \output is active [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] Underfull \hbox (badness 2165) in paragraph at lines 25410--25415 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1 /ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1811] [1812] [1813] [1814] Underfull \hbox (badness 1867) in paragraph at lines 25619--25621 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25634--25638 []\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <- [1815] [1816] [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838] [1839] Underfull \vbox (badness 10000) has occurred while \output is active [1840] [1841] Underfull \hbox (badness 3514) in paragraph at lines 27282--27287 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1842] [1843] [1844] [1845] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27516--27516 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27552--27558 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1846] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27609--27609 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27611--27611 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1847] [1848] [1849] Underfull \hbox (badness 3514) in paragraph at lines 27785--27790 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1850] [1851] Underfull \hbox (badness 3514) in paragraph at lines 27872--27877 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1852] Underfull \hbox (badness 3514) in paragraph at lines 27937--27942 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1853] [1854] Underfull \hbox (badness 3514) in paragraph at lines 28031--28036 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1855] [1856] Underfull \hbox (badness 6691) in paragraph at lines 28123--28128 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] Underfull \hbox (badness 4024) in paragraph at lines 28614--28617 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 5431) in paragraph at lines 29220--29222 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1875] [1876] [1877] Underfull \hbox (badness 5431) in paragraph at lines 29430--29433 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1878] [1879] [1880] [1881] [1882] [1883] Underfull \hbox (badness 1337) in paragraph at lines 29745--29749 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1884] [1885] [1886] [1887] [1888] Underfull \hbox (badness 1616) in paragraph at lines 30057--30060 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 3557) in paragraph at lines 31192--31196 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[ ]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect []\T1/zi4/m/n/10 interval = [1908] [1909] [1910] Underfull \vbox (badness 10000) has occurred while \output is active [1911] [1912] [1913] Underfull \hbox (badness 1337) in paragraph at lines 31556--31560 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] Underfull \hbox (badness 1337) in paragraph at lines 32085--32089 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1923] [1924] [1925] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32292--32292 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1926] [1927] [1928] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32453--32453 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1929] [1930] [1931] [1932] [1933]) (./stats4-pkg.tex [1934] Chapter 11. [1935] [1936] [1937] Underfull \vbox (badness 10000) has occurred while \output is active [1938] Underfull \vbox (badness 10000) has occurred while \output is active [1939] [1940] [1941] [1942]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1943] [1944] [1945]) (./tcltk-pkg.tex [1946] Chapter 12. [1947] [1948] [1949] [1950] [1951] [1952] [1953] Underfull \vbox (badness 10000) has occurred while \output is active [1954] Underfull \vbox (badness 10000) has occurred while \output is active [1955] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning [1956] [1957] [1958] [1959] [1960] Underfull \vbox (badness 10000) has occurred while \output is active [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968]) (./tools-pkg.tex Chapter 13. [1969] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1970] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1971] [1972] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi 4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and [1973] [1974] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1975] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1988] Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 []\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [ ]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1989] [1990] [1991] [1992] [1993] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit h its func-tion-al-ity in-te-grated into that of [1994] [1995] Underfull \hbox (badness 4096) in paragraph at lines 1707--1715 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1996] [1997] [1998] [1999]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2000] [2001] [2002] [2003] [2004] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [2005] [2006] [2007] Underfull \hbox (badness 4096) in paragraph at lines 2391--2399 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2008] [2009] [2010] [2011] [2012] [2013] [2014] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [2015] [2016] [2017] [2018] [2019] Underfull \hbox (badness 1424) in paragraph at lines 3188--3190 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2020] [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2031] [2032] Underfull \hbox (badness 10000) in paragraph at lines 4029--4032 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2033] [2034] Underfull \hbox (badness 1137) in paragraph at lines 4131--4133 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [2035] [2036] [2037] [2038] [2039] Underfull \hbox (badness 1796) in paragraph at lines 4439--4444 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = [2040] Underfull \hbox (badness 4699) in paragraph at lines 4489--4493 []\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 msgmerge []\T1/ptm/m/n/10 in ad-di-tion to Underfull \hbox (badness 1946) in paragraph at lines 4489--4493 []\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m /n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called from Underfull \hbox (badness 1838) in paragraph at lines 4517--4523 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4517--4523 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2041] [2042] [2043] [2044] [2045] Underfull \hbox (badness 2197) in paragraph at lines 4792--4802 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 1571) in paragraph at lines 4858--4862 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2046] [2047] [2048] [2049]) (./utils-pkg.tex [2050] Chapter 14. [2051] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] Underfull \hbox (badness 10000) in paragraph at lines 726--732 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 726--732 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2062] [2063] [2064] Underfull \hbox (badness 3861) in paragraph at lines 931--936 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2065] [2066] [2067] Underfull \hbox (badness 3323) in paragraph at lines 1115--1123 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it /10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m $\T1/ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 2875) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex. max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c ally. Underfull \hbox (badness 1817) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1127--1129 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1371) in paragraph at lines 1637--1639 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2076] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1707. [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] Underfull \hbox (badness 2057) in paragraph at lines 2358--2360 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2087] [2088] [2089] [2090] [2091] [2092]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig nored \relax l.2709 ... the Clipboard in MS Windows}{clipboard} [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 6842) in paragraph at lines 4006--4011 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2113] Underfull \hbox (badness 1430) in paragraph at lines 4069--4077 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2114] [2115] [2116] Underfull \hbox (badness 10000) in paragraph at lines 4274--4276 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4983 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4983 ...mat Unordered and Ordered Lists}{format} [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] Underfull \hbox (badness 1622) in paragraph at lines 5506--5510 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2137] [2138] [2139] [2140] [2141] [2142] Underfull \hbox (badness 1448) in paragraph at lines 5885--5890 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6431. Underfull \hbox (badness 1371) in paragraph at lines 6435--6437 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2151] Underfull \hbox (badness 1502) in paragraph at lines 6524--6529 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6524--6529 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2152] [2153] [2154] Underfull \hbox (badness 10000) in paragraph at lines 6697--6706 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2155] Underfull \hbox (badness 2150) in paragraph at lines 6761--6764 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2156] [2157] Underfull \hbox (badness 3118) in paragraph at lines 6900--6902 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2158] [2159] [2160] Underfull \hbox (badness 1325) in paragraph at lines 7079--7083 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2161] Underfull \hbox (badness 1424) in paragraph at lines 7171--7174 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2162] Underfull \hbox (badness 3219) in paragraph at lines 7242--7249 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7242--7249 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7242--7249 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7242--7249 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7250--7253 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2163] Underfull \hbox (badness 1024) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2164] Underfull \hbox (badness 10000) in paragraph at lines 7410--7415 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] Underfull \hbox (badness 10000) in paragraph at lines 8114--8116 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] Underfull \hbox (badness 2310) in paragraph at lines 8874--8879 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] Underfull \hbox (badness 1248) in paragraph at lines 9400--9404 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2197] Underfull \hbox (badness 1789) in paragraph at lines 9480--9482 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] Underfull \hbox (badness 1097) in paragraph at lines 10317--10320 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2211] [2212] Underfull \hbox (badness 3000) in paragraph at lines 10453--10458 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] Underfull \hbox (badness 2134) in paragraph at lines 11042--11047 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2222] Underfull \hbox (badness 10000) in paragraph at lines 11098--11103 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11098--11103 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] Underfull \hbox (badness 2469) in paragraph at lines 11592--11596 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11592--11596 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . 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[]\T1/zi4/m/it/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/it/10 tar []\T1/ptm/m/n /10 which used [2274] [2275] Underfull \hbox (badness 6510) in paragraph at lines 14496--14500 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/it/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14503--14506 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14503--14506 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2276] [2277] [2278] [2279] [2280] [2281] [2282] [2283] [2284] [2285] Underfull \hbox (badness 10000) in paragraph at lines 15172--15177 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/it/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/it/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15172--15177 [][][]\T1/zi4/m/it/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/i t/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15178--15180 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX 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replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt0900 mkdir: cannot create directory ‘././sbuild-nonexistent’: Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt0900 This is METAFONT, Version 2.71828182 (TeX Live 2022/dev/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 328--331 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 567--573 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1578--1584 [26] [27] [28] [29] [30] [31] [32] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2056--2056 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Underfull \hbox (badness 1721) in paragraph at lines 2720--2724 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 3901--3903 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 2521) in paragraph at lines 5196--5198 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6387--6387 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] Underfull \hbox (badness 1303) in paragraph at lines 7281--7288 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [113] Underfull \hbox (badness 2111) in paragraph at lines 7292--7297 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] [124] Underfull \hbox (badness 2096) in paragraph at lines 7962--7966 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [125] Underfull \hbox (badness 2351) in paragraph at lines 8076--8079 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] [130] Underfull \hbox (badness 4479) in paragraph at lines 8393--8404 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1629) in paragraph at lines 8845--8857 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 8845--8857 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Underfull \hbox (badness 2744) in paragraph at lines 11903--11905 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] Underfull \hbox (badness 2253) in paragraph at lines 14094--14096 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [216] [217] Underfull \hbox (badness 1565) in paragraph at lines 14170--14174 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and Underfull \hbox (badness 4927) in paragraph at lines 14214--14216 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [218] [219] Underfull \hbox (badness 3148) in paragraph at lines 14316--14321 [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [ ][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file. show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co n-sider [220] Underfull \hbox (badness 1466) in paragraph at lines 14363--14366 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [221] [222] Underfull \hbox (badness 10000) in paragraph at lines 14494--14498 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14505--14508 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [223] [224] [225] [226] Underfull \hbox (badness 3965) in paragraph at lines 14802--14806 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Underfull \hbox (badness 4429) in paragraph at lines 15583--15586 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [240] Underfull \hbox (badness 10000) in paragraph at lines 15689--15691 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [241] Underfull \hbox (badness 2035) in paragraph at lines 15762--15766 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] Underfull \hbox (badness 2452) in paragraph at lines 16374--16378 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16374--16378 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [252] [253] [254] Underfull \hbox (badness 1092) in paragraph at lines 16547--16552 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [255] [256] [257] Underfull \hbox (badness 6741) in paragraph at lines 16800--16804 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \vbox (badness 10000) has occurred while \output is active [269] Underfull \vbox (badness 10000) has occurred while \output is active [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \hbox (badness 1478) in paragraph at lines 18252--18255 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [280] [281] [282] [283] Underfull \hbox (badness 10000) in paragraph at lines 18524--18526 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 18530--18539 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] Underfull \hbox (badness 1442) in paragraph at lines 19138--19140 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [294] [295] [296] [297] [298] Underfull \hbox (badness 10000) in paragraph at lines 19469--19475 [299] [300] [301] [302] Underfull \hbox (badness 1248) in paragraph at lines 19714--19717 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [303] [304] [305] [306] Underfull \hbox (badness 4739) in paragraph at lines 19977--19979 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [307] [308] [309] [310] Underfull \hbox (badness 1603) in paragraph at lines 20204--20207 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] [323] Underfull \hbox (badness 2469) in paragraph at lines 21057--21062 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [324] [325] Underfull \hbox (badness 1675) in paragraph at lines 21145--21154 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21155--21170 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21205--21208 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21205--21208 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [326] [327] Underfull \hbox (badness 1014) in paragraph at lines 21339--21344 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 1264) in paragraph at lines 22188--22196 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [341] Underfull \hbox (badness 4441) in paragraph at lines 22222--22225 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] Underfull \hbox (badness 5231) in paragraph at lines 23019--23021 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] Underfull \hbox (badness 10000) in paragraph at lines 24112--24118 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24112--24118 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [371] [372] [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 2790) in paragraph at lines 24609--24612 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24609--24612 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [379] [380] [381] [382] [383] Underfull \hbox (badness 1194) in paragraph at lines 24932--24935 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [384] [385] [386] Underfull \hbox (badness 2368) in paragraph at lines 25139--25145 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [387] [388] [389] [390] [391] [392] Underfull \hbox (badness 10000) in paragraph at lines 25529--25532 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] Underfull \hbox (badness 10000) in paragraph at lines 26150--26152 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1881) in paragraph at lines 27045--27048 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27069--27071 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [416] [417] Underfull \hbox (badness 2142) in paragraph at lines 27210--27214 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 27267--27272 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [418] [419] [420] [421] Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27574--27577 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt m/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 27600--27602 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [422] Underfull \hbox (badness 10000) in paragraph at lines 27642--27647 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27648--27659 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27648--27659 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 27660--27663 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [423] [424] [425] [426] [427] Underfull \vbox (badness 3803) has occurred while \output is active [428] Underfull \hbox (badness 10000) in paragraph at lines 28060--28064 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [429] [430] Underfull \hbox (badness 10000) in paragraph at lines 28207--28210 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [431] Underfull \hbox (badness 7925) in paragraph at lines 28288--28292 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 28288--28292 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 28293--28302 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] Underfull \hbox (badness 2726) in paragraph at lines 29289--29292 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \hbox (badness 1603) in paragraph at lines 30039--30042 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] Underfull \hbox (badness 1533) in paragraph at lines 31076--31079 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [475] [476] [477] Underfull \hbox (badness 1163) in paragraph at lines 31239--31250 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] Underfull \hbox (badness 10000) in paragraph at lines 32902--32906 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32902--32906 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32923--32925 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32926--32930 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [504] [505] Underfull \vbox (badness 10000) has occurred while \output is active [506] [507] [508] [509] [510] [511] [512] [513] Underfull \hbox (badness 1655) in paragraph at lines 33520--33522 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \hbox (badness 2261) in paragraph at lines 34726--34731 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 35846--35857 \T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars ing-[]c-[]command-[]line-[]arguments ? [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] Underfull \hbox (badness 10000) in paragraph at lines 37377--37379 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [574] Underfull \vbox (badness 10000) has occurred while \output is active [575] [576] [577] [578] [579] [580] Underfull \hbox (badness 2913) in paragraph at lines 37797--37801 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [581] [582] [583] Underfull \hbox (badness 1072) in paragraph at lines 38043--38047 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 38048--38052 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', [584] Underfull \hbox (badness 10000) in paragraph at lines 38088--38094 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 38088--38094 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 38088--38094 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 38103--38110 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [585] [586] [587] Underfull \hbox (badness 2644) in paragraph at lines 38338--38342 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [588] [589] [590] Underfull \hbox (badness 1142) in paragraph at lines 38491--38497 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] Underfull \hbox (badness 1158) in paragraph at lines 39792--39794 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [612] [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 1137) in paragraph at lines 40382--40388 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails [621] Underfull \hbox (badness 4967) in paragraph at lines 40401--40406 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [622] [623] Underfull \hbox (badness 1616) in paragraph at lines 40521--40526 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [624] [625] [626] [627] [628] [629] [630] [631] Underfull \hbox (badness 1472) in paragraph at lines 41068--41071 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 10000) in paragraph at lines 41994--41998 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/ m/n/10 length(bin) > [647] [648] [649] [650] Underfull \hbox (badness 10000) in paragraph at lines 42245--42248 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [651] [652] [653] Underfull \hbox (badness 10000) in paragraph at lines 42429--42433 [][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [654] [655] [656] [657] [658] [659] [660] [661] [662] Underfull \hbox (badness 10000) in paragraph at lines 43055--43058 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [663] [664] [665] [666] [667] Underfull \vbox (badness 3803) has occurred while \output is active [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 1990) in paragraph at lines 43977--43985 []\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43977--43985 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] Underfull \hbox (badness 2452) in paragraph at lines 44946--44952 [][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 3668) in paragraph at lines 45344--45346 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [697] [698] Underfull \hbox (badness 2401) in paragraph at lines 45474--45478 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [699] [700] [701] Underfull \hbox (badness 2111) in paragraph at lines 45682--45687 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [702] [703] [704] [705] Underfull \hbox (badness 4001) in paragraph at lines 45928--45930 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [706] [707] [708] [709] [710] [711] Underfull \hbox (badness 5417) in paragraph at lines 46293--46297 []\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [712] Underfull \hbox (badness 10000) in paragraph at lines 46354--46358 []\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [713]) (./compiler-pkg.tex [714] Chapter 2. [715] [716] [717] [718]) (./datasets-pkg.tex Chapter 3. [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801]) (./grDevices-pkg.tex [802] Chapter 4. [803] [804] [805] [806] [807] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\ T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/ ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p tm/m/n/10 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i-fied as [818] [819] [820] [821] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [822] [823] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [824] [825] [826] [827] [828] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [ ][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T 1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1624--1628 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [829] [830] [831] [832] [833] [834] [835] Underfull \hbox (badness 1325) in paragraph at lines 2038--2048 []\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1 0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10 , [836] Underfull \hbox (badness 10000) in paragraph at lines 2150--2152 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [837] [838] [839] Underfull \hbox (badness 6758) in paragraph at lines 2329--2332 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 10000) in paragraph at lines 2940--2941 [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] Underfull \vbox (badness 3803) has occurred while \output is active [862] [863] [864] [865] Underfull \vbox (badness 3803) has occurred while \output is active [866] Underfull \hbox (badness 10000) in paragraph at lines 4016--4019 []\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10 give a C in-te-ger for-mat such as [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] Underfull \vbox (badness 3803) has occurred while \output is active [879] [880] Underfull \hbox (badness 1584) in paragraph at lines 4907--4909 []\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/ zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4911--4918 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [881] [882] [883] [884] Underfull \hbox (badness 1377) in paragraph at lines 5217--5222 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [885] Underfull \hbox (badness 1418) in paragraph at lines 5293--5300 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\ T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m /n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet ica-Narrow"[]\T1/ptm/m/n/10 , [886] Underfull \hbox (badness 1755) in paragraph at lines 5311--5313 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [887] Underfull \hbox (badness 1377) in paragraph at lines 5422--5427 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [888] Underfull \hbox (badness 7344) in paragraph at lines 5491--5493 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [889] Underfull \vbox (badness 3803) has occurred while \output is active [890] Underfull \hbox (badness 2035) in paragraph at lines 5629--5638 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5629--5638 \T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na rrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5629--5638 []\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi 4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m /n/10 , [891] [892] Underfull \hbox (badness 10000) in paragraph at lines 5697--5699 []\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [893] [894] Underfull \hbox (badness 1546) in paragraph at lines 5841--5849 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , [] \T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] [902] Underfull \hbox (badness 10000) in paragraph at lines 6379--6382 []\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [903] [904] Underfull \vbox (badness 3803) has occurred while \output is active [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] Underfull \hbox (badness 1189) in paragraph at lines 7208--7210 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [917] Underfull \hbox (badness 10000) in paragraph at lines 7313--7315 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [918] [919] [920] [921] [922] Underfull \hbox (badness 3780) in paragraph at lines 7627--7633 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n /10 "AvantGarde"[]\T1/ptm/m/n/10 , [923] [924] [925] [926] [927] [928]) (./graphics-pkg.tex Chapter 5. [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Overfull \hbox (12.71341pt too wide) in paragraph at lines 983--983 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [945] [946] [947] [948] [949] [950] Underfull \hbox (badness 4634) in paragraph at lines 1357--1360 [][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p tm/m/n/10 , [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] Underfull \hbox (badness 1728) in paragraph at lines 2335--2337 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [968] Underfull \hbox (badness 1009) in paragraph at lines 2428--2435 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] Underfull \vbox (badness 10000) has occurred while \output is active [992] Underfull \vbox (badness 10000) has occurred while \output is active [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] Underfull \hbox (badness 3229) in paragraph at lines 4652--4657 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1005] [1006] [1007] [1008] [1009] Underfull \hbox (badness 1107) in paragraph at lines 5081--5087 []\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch) , [1010] [1011] Underfull \hbox (badness 10000) in paragraph at lines 5210--5213 [1012 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5271--5273 Underfull \vbox (badness 10000) has occurred while \output is active [1013] [1014 >/library/graphics/help/figures//oma.pdf >] [1015] [1016] Underfull \vbox (badness 3803) has occurred while \output is active [1017] [1018] [1019] [1020] [1021] [1022] [1023]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.plot}) has been already used, duplicate ignored \relax l.5943 \aliasA{plot}{plot.default}{plot} [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6848--6849 [][] [1038 >/library/graphics/help/figures//pch.pdf >] [1039] Underfull \vbox (badness 3803) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 4954) in paragraph at lines 8936--8938 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /n/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 8938--8940 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par (c("font.lab", "cex.lab", [1073]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.9018 \HeaderA{units}{Graphical Units}{units} [1074] [1075] [1076] [1077]) (./grid-pkg.tex [1078] Chapter 6. [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 2680) in paragraph at lines 550--553 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c u-la-tion of [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \hbox (badness 4279) in paragraph at lines 1187--1196 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 , [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] Underfull \hbox (badness 10000) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] Underfull \vbox (badness 10000) has occurred while \output is active [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] Underfull \hbox (badness 1067) in paragraph at lines 4761--4764 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1160] [1161] [1162] [1163] [1164] [1165] Underfull \hbox (badness 7256) in paragraph at lines 5112--5114 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 2142) in paragraph at lines 5561--5565 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1 0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1173] [1174] Underfull \hbox (badness 4699) in paragraph at lines 5632--5637 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206]) (./methods-pkg.tex Chapter 7. [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] Underfull \vbox (badness 10000) has occurred while \output is active [1215] Underfull \vbox (badness 10000) has occurred while \output is active [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1 0 "package"[]\T1/ptm/m/n/10 , also of class [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m /n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1235] [1236] [1237] Underfull \hbox (badness 2213) in paragraph at lines 2213--2218 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/n/10 where = [1238] [1239] [1240] [1241] [1242] Underfull \hbox (badness 10000) in paragraph at lines 2573--2576 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class [1243] [1244] Underfull \hbox (badness 1132) in paragraph at lines 2713--2717 []\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4 /m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl ot of the re-turned re-sult is in [1245] Underfull \hbox (badness 1033) in paragraph at lines 2745--2750 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 re-stores the [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 1102) in paragraph at lines 3302--3304 []\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1253] [1254] [1255] [1256] [1257] [1258] Underfull \hbox (badness 10000) in paragraph at lines 3641--3650 []\T1/ptm/m/n/10 The [1259] Underfull \hbox (badness 10000) in paragraph at lines 3761--3762 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = "numeric", [1260] Underfull \hbox (badness 10000) in paragraph at lines 3845--3846 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 1769) in paragraph at lines 4476--4482 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4476--4482 []\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [] [][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use d by [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \vbox (badness 10000) has occurred while \output is active [1281] [1282] [1283] Underfull \hbox (badness 4036) in paragraph at lines 5445--5448 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/ n/10 the method to use in re-sponse to a [1284] [1285] Underfull \hbox (badness 3803) in paragraph at lines 5520--5522 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1286] [1287] [1288] Underfull \hbox (badness 1087) in paragraph at lines 5752--5757 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] Underfull \hbox (badness 1675) in paragraph at lines 6459--6465 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1298] [1299] [1300] [1301] Underfull \vbox (badness 10000) has occurred while \output is active [1302] [1303] [1304]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6981 \aliasA{S4}{S3Part}{S4} [1305] [1306] [1307]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7237 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7239 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7240 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7242 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7243 \aliasA{Summary}{S4groupGeneric}{Summary} [1308] Underfull \hbox (badness 2050) in paragraph at lines 7304--7308 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1309] [1310] [1311] Underfull \hbox (badness 1286) in paragraph at lines 7492--7494 []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t yp-i-cally [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] Underfull \vbox (badness 10000) has occurred while \output is active [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 1852) in paragraph at lines 10572--10576 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1354] [1355] [1356] [1357]) (./parallel-pkg.tex [1358] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1359] [1360] [1361] [1362] [1363] Underfull \hbox (badness 1320) in paragraph at lines 301--304 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] Underfull \hbox (badness 3386) in paragraph at lines 1402--1405 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the [1381] [1382] [1383]) (./splines-pkg.tex [1384] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400]) (./stats-pkg.tex Chapter 10. [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] Underfull \hbox (badness 1412) in paragraph at lines 887--889 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 2503) in paragraph at lines 1369--1372 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \hbox (badness 2503) in paragraph at lines 3530--3533 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] Underfull \hbox (badness 3989) in paragraph at lines 4787--4794 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] Underfull \hbox (badness 2556) in paragraph at lines 5424--5427 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[] \T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi lter"[]\T1/ptm/m/n/10 . For [1487] [1488] [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 2503) in paragraph at lines 5838--5842 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 7081) in paragraph at lines 6632--6635 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6636--6638 []\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] Underfull \hbox (badness 10000) in paragraph at lines 7493--7496 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \vbox (badness 10000) has occurred while \output is active [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 2626) in paragraph at lines 9172--9175 []\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1547] [1548] Underfull \hbox (badness 2503) in paragraph at lines 9279--9283 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] Underfull \hbox (badness 4518) in paragraph at lines 10631--10636 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1570] [1571] [1572] [1573] [1574] Underfull \hbox (badness 2142) in paragraph at lines 10992--10995 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11011--11014 []\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-er-a-tion. Hence, [1575] Underfull \hbox (badness 1708) in paragraph at lines 11073--11077 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1576] [1577] [1578] [1579] [1580] [1581] Underfull \hbox (badness 1694) in paragraph at lines 11469--11472 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11950 \aliasA{hat}{influence.measures}{hat} [1590] [1591] Underfull \hbox (badness 1484) in paragraph at lines 12092--12094 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 10000) in paragraph at lines 12694--12696 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit = [1602] [1603] [1604] [1605] [1606] [1607] Underfull \hbox (badness 2894) in paragraph at lines 13030--13034 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 1496) in paragraph at lines 13444--13450 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1614] [1615] [1616] [1617] [1618] [1619] [1620] Underfull \hbox (badness 4518) in paragraph at lines 13842--13847 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 4518) in paragraph at lines 14503--14508 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1631] [1632] Underfull \hbox (badness 6412) in paragraph at lines 14641--14645 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte rpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14648--14650 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] Underfull \hbox (badness 2503) in paragraph at lines 15724--15728 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1651] [1652] Underfull \vbox (badness 10000) has occurred while \output is active [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 10000) in paragraph at lines 16237--16243 []\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/ 10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16237--16243 []\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/ ptm/m/n/10 sums any terms [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 1158) in paragraph at lines 17888--17891 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1 /ptm/m/n/10 as the data ar-gu-ment. The ac- [1686] [1687] Underfull \vbox (badness 3803) has occurred while \output is active [1688] Underfull \vbox (badness 10000) has occurred while \output is active [1689] Underfull \vbox (badness 10000) has occurred while \output is active [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] Underfull \hbox (badness 1377) in paragraph at lines 18915--18920 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18920--18923 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18933--18937 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18933--18937 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18941--18945 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T 1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1 0 "SANN" []\T1/ptm/m/n/10 meth-ods if [1704] [1705] [1706] Underfull \vbox (badness 10000) has occurred while \output is active [1707] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19166--19166 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19169--19169 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1708] [1709] [1710] [1711] [1712] [1713] [1714] Underfull \hbox (badness 1337) in paragraph at lines 19628--19631 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] Underfull \hbox (badness 10000) in paragraph at lines 20099--20105 \T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty = cook.lty, col = cook.col, text.col [1724] [1725] [1726] [1727] [1728] Underfull \hbox (badness 1194) in paragraph at lines 20429--20432 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1729] [1730] [1731] [1732] [1733] [1734] Underfull \hbox (badness 2503) in paragraph at lines 20808--20811 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1735] Underfull \hbox (badness 3919) in paragraph at lines 20835--20837 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] Underfull \hbox (badness 10000) in paragraph at lines 21913--21919 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 23270--23276 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 1436) in paragraph at lines 23695--23698 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2, [1784] Underfull \hbox (badness 10000) in paragraph at lines 23836--23837 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 1824) in paragraph at lines 24808--24814 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f irst re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24808--24814 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1801] Underfull \hbox (badness 10000) in paragraph at lines 24829--24832 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] = [1802] Underfull \vbox (badness 3803) has occurred while \output is active [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] Underfull \hbox (badness 2165) in paragraph at lines 25410--25415 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1 /ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1811] [1812] [1813] [1814] Underfull \hbox (badness 1867) in paragraph at lines 25619--25621 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25634--25638 []\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <- [1815] [1816] [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838] [1839] Underfull \vbox (badness 10000) has occurred while \output is active [1840] [1841] Underfull \hbox (badness 3514) in paragraph at lines 27282--27287 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1842] [1843] [1844] [1845] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27516--27516 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27552--27558 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1846] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27609--27609 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27611--27611 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1847] [1848] [1849] Underfull \hbox (badness 3514) in paragraph at lines 27785--27790 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1850] [1851] Underfull \hbox (badness 3514) in paragraph at lines 27872--27877 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1852] Underfull \hbox (badness 3514) in paragraph at lines 27937--27942 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1853] [1854] Underfull \hbox (badness 3514) in paragraph at lines 28031--28036 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1855] [1856] Underfull \hbox (badness 6691) in paragraph at lines 28123--28128 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] Underfull \hbox (badness 4024) in paragraph at lines 28614--28617 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 5431) in paragraph at lines 29220--29222 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1875] [1876] [1877] Underfull \hbox (badness 5431) in paragraph at lines 29430--29433 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1878] [1879] [1880] [1881] [1882] [1883] Underfull \hbox (badness 1337) in paragraph at lines 29745--29749 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1884] [1885] [1886] [1887] [1888] Underfull \hbox (badness 1616) in paragraph at lines 30057--30060 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 3557) in paragraph at lines 31192--31196 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[ ]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect []\T1/zi4/m/n/10 interval = [1908] [1909] [1910] Underfull \vbox (badness 10000) has occurred while \output is active [1911] [1912] [1913] Underfull \hbox (badness 1337) in paragraph at lines 31556--31560 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] Underfull \hbox (badness 1337) in paragraph at lines 32085--32089 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1923] [1924] [1925] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32292--32292 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1926] [1927] [1928] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32453--32453 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1929] [1930] [1931] [1932] [1933]) (./stats4-pkg.tex [1934] Chapter 11. [1935] [1936] [1937] Underfull \vbox (badness 10000) has occurred while \output is active [1938] Underfull \vbox (badness 10000) has occurred while \output is active [1939] [1940] [1941] [1942]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1943] [1944] [1945]) (./tcltk-pkg.tex [1946] Chapter 12. [1947] [1948] [1949] [1950] [1951] [1952] [1953] Underfull \vbox (badness 10000) has occurred while \output is active [1954] Underfull \vbox (badness 10000) has occurred while \output is active [1955] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning [1956] [1957] [1958] [1959] [1960] Underfull \vbox (badness 10000) has occurred while \output is active [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968]) (./tools-pkg.tex Chapter 13. [1969] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1970] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1971] [1972] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi 4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and [1973] [1974] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1975] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1988] Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 []\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [ ]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1989] [1990] [1991] [1992] [1993] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit h its func-tion-al-ity in-te-grated into that of [1994] [1995] Underfull \hbox (badness 4096) in paragraph at lines 1707--1715 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1996] [1997] [1998] [1999]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2000] [2001] [2002] [2003] [2004] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [2005] [2006] [2007] Underfull \hbox (badness 4096) in paragraph at lines 2391--2399 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2008] [2009] [2010] [2011] [2012] [2013] [2014] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [2015] [2016] [2017] [2018] [2019] Underfull \hbox (badness 1424) in paragraph at lines 3188--3190 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2020] [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2031] [2032] Underfull \hbox (badness 10000) in paragraph at lines 4029--4032 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2033] [2034] Underfull \hbox (badness 1137) in paragraph at lines 4131--4133 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [2035] [2036] [2037] [2038] [2039] Underfull \hbox (badness 1796) in paragraph at lines 4439--4444 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = [2040] Underfull \hbox (badness 4699) in paragraph at lines 4489--4493 []\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 msgmerge []\T1/ptm/m/n/10 in ad-di-tion to Underfull \hbox (badness 1946) in paragraph at lines 4489--4493 []\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m /n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called from Underfull \hbox (badness 1838) in paragraph at lines 4517--4523 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4517--4523 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2041] [2042] [2043] [2044] [2045] Underfull \hbox (badness 2197) in paragraph at lines 4792--4802 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 1571) in paragraph at lines 4858--4862 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2046] [2047] [2048] [2049]) (./utils-pkg.tex [2050] Chapter 14. [2051] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] Underfull \hbox (badness 10000) in paragraph at lines 726--732 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 726--732 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2062] [2063] [2064] Underfull \hbox (badness 3861) in paragraph at lines 931--936 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2065] [2066] [2067] Underfull \hbox (badness 3323) in paragraph at lines 1115--1123 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it /10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m $\T1/ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 2875) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex. max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c ally. Underfull \hbox (badness 1817) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1127--1129 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1371) in paragraph at lines 1637--1639 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2076] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1707. [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] Underfull \hbox (badness 2057) in paragraph at lines 2358--2360 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2087] [2088] [2089] [2090] [2091] [2092]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig nored \relax l.2709 ... the Clipboard in MS Windows}{clipboard} [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 6842) in paragraph at lines 4006--4011 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2113] Underfull \hbox (badness 1430) in paragraph at lines 4069--4077 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2114] [2115] [2116] Underfull \hbox (badness 10000) in paragraph at lines 4274--4276 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4983 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4983 ...mat Unordered and Ordered Lists}{format} [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] Underfull \hbox (badness 1622) in paragraph at lines 5506--5510 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2137] [2138] [2139] [2140] [2141] [2142] Underfull \hbox (badness 1448) in paragraph at lines 5885--5890 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6431. Underfull \hbox (badness 1371) in paragraph at lines 6435--6437 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2151] Underfull \hbox (badness 1502) in paragraph at lines 6524--6529 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6524--6529 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2152] [2153] [2154] Underfull \hbox (badness 10000) in paragraph at lines 6697--6706 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2155] Underfull \hbox (badness 2150) in paragraph at lines 6761--6764 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2156] [2157] Underfull \hbox (badness 3118) in paragraph at lines 6900--6902 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2158] [2159] [2160] Underfull \hbox (badness 1325) in paragraph at lines 7079--7083 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2161] Underfull \hbox (badness 1424) in paragraph at lines 7171--7174 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2162] Underfull \hbox (badness 3219) in paragraph at lines 7242--7249 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7242--7249 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7242--7249 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7242--7249 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7250--7253 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2163] Underfull \hbox (badness 1024) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2164] Underfull \hbox (badness 10000) in paragraph at lines 7410--7415 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] Underfull \hbox (badness 10000) in paragraph at lines 8114--8116 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] Underfull \hbox (badness 2310) in paragraph at lines 8874--8879 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] Underfull \hbox (badness 1248) in paragraph at lines 9400--9404 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2197] Underfull \hbox (badness 1789) in paragraph at lines 9480--9482 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] Underfull \hbox (badness 1097) in paragraph at lines 10317--10320 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2211] [2212] Underfull \hbox (badness 3000) in paragraph at lines 10453--10458 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] Underfull \hbox (badness 2134) in paragraph at lines 11042--11047 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2222] Underfull \hbox (badness 10000) in paragraph at lines 11098--11103 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11098--11103 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] Underfull \hbox (badness 2469) in paragraph at lines 11592--11596 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11592--11596 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 328--331 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 567--573 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1578--1584 [26] [27] [28] [29] [30] [31] [32] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2056--2056 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Underfull \hbox (badness 1721) in paragraph at lines 2720--2724 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 3901--3903 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 2521) in paragraph at lines 5196--5198 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6387--6387 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] Underfull \hbox (badness 1303) in paragraph at lines 7281--7288 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [113] Underfull \hbox (badness 2111) in paragraph at lines 7292--7297 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] [124] Underfull \hbox (badness 2096) in paragraph at lines 7962--7966 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [125] Underfull \hbox (badness 2351) in paragraph at lines 8076--8079 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] [130] Underfull \hbox (badness 4479) in paragraph at lines 8393--8404 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1629) in paragraph at lines 8845--8857 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 8845--8857 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Underfull \hbox (badness 2744) in paragraph at lines 11903--11905 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] Underfull \hbox (badness 2253) in paragraph at lines 14094--14096 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [216] [217] Underfull \hbox (badness 1565) in paragraph at lines 14170--14174 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and Underfull \hbox (badness 4927) in paragraph at lines 14214--14216 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [218] [219] Underfull \hbox (badness 3148) in paragraph at lines 14316--14321 [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [ ][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file. show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co n-sider [220] Underfull \hbox (badness 1466) in paragraph at lines 14363--14366 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [221] [222] Underfull \hbox (badness 10000) in paragraph at lines 14494--14498 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14505--14508 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [223] [224] [225] [226] Underfull \hbox (badness 3965) in paragraph at lines 14802--14806 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Underfull \hbox (badness 4429) in paragraph at lines 15583--15586 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [240] Underfull \hbox (badness 10000) in paragraph at lines 15689--15691 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [241] Underfull \hbox (badness 2035) in paragraph at lines 15762--15766 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [242] [243] [244] [245] [246] [247] [248] [249] [250] [251] Underfull \hbox (badness 2452) in paragraph at lines 16374--16378 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16374--16378 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [252] [253] [254] Underfull \hbox (badness 1092) in paragraph at lines 16547--16552 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [255] [256] [257] Underfull \hbox (badness 6741) in paragraph at lines 16800--16804 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \vbox (badness 10000) has occurred while \output is active [269] Underfull \vbox (badness 10000) has occurred while \output is active [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \hbox (badness 1478) in paragraph at lines 18252--18255 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [280] [281] [282] [283] Underfull \hbox (badness 10000) in paragraph at lines 18524--18526 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 18530--18539 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] Underfull \hbox (badness 1442) in paragraph at lines 19138--19140 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [294] [295] [296] [297] [298] Underfull \hbox (badness 10000) in paragraph at lines 19469--19475 [299] [300] [301] [302] Underfull \hbox (badness 1248) in paragraph at lines 19714--19717 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [303] [304] [305] [306] Underfull \hbox (badness 4739) in paragraph at lines 19977--19979 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [307] [308] [309] [310] Underfull \hbox (badness 1603) in paragraph at lines 20204--20207 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] [323] Underfull \hbox (badness 2469) in paragraph at lines 21057--21062 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [324] [325] Underfull \hbox (badness 1675) in paragraph at lines 21145--21154 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21155--21170 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21205--21208 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21205--21208 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [326] [327] Underfull \hbox (badness 1014) in paragraph at lines 21339--21344 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 1264) in paragraph at lines 22188--22196 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [341] Underfull \hbox (badness 4441) in paragraph at lines 22222--22225 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] Underfull \hbox (badness 5231) in paragraph at lines 23019--23021 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] Underfull \hbox (badness 10000) in paragraph at lines 24112--24118 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24112--24118 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [371] [372] [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 2790) in paragraph at lines 24609--24612 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24609--24612 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [379] [380] [381] [382] [383] Underfull \hbox (badness 1194) in paragraph at lines 24932--24935 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [384] [385] [386] Underfull \hbox (badness 2368) in paragraph at lines 25139--25145 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [387] [388] [389] [390] [391] [392] Underfull \hbox (badness 10000) in paragraph at lines 25529--25532 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] Underfull \hbox (badness 10000) in paragraph at lines 26150--26152 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1881) in paragraph at lines 27045--27048 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27069--27071 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [416] [417] Underfull \hbox (badness 2142) in paragraph at lines 27210--27214 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 27267--27272 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [418] [419] [420] [421] Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27561--27567 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27574--27577 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt m/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 27600--27602 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [422] Underfull \hbox (badness 10000) in paragraph at lines 27642--27647 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27648--27659 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27648--27659 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 27660--27663 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [423] [424] [425] [426] [427] Underfull \vbox (badness 3803) has occurred while \output is active [428] Underfull \hbox (badness 10000) in paragraph at lines 28060--28064 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [429] [430] Underfull \hbox (badness 10000) in paragraph at lines 28207--28210 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [431] Underfull \hbox (badness 7925) in paragraph at lines 28288--28292 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 28288--28292 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 28293--28302 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] Underfull \hbox (badness 2726) in paragraph at lines 29289--29292 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \hbox (badness 1603) in paragraph at lines 30039--30042 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] Underfull \hbox (badness 1533) in paragraph at lines 31076--31079 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [475] [476] [477] Underfull \hbox (badness 1163) in paragraph at lines 31239--31250 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] Underfull \hbox (badness 10000) in paragraph at lines 32902--32906 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32902--32906 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32923--32925 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32926--32930 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [504] [505] Underfull \vbox (badness 10000) has occurred while \output is active [506] [507] [508] [509] [510] [511] [512] [513] Underfull \hbox (badness 1655) in paragraph at lines 33520--33522 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] Underfull \hbox (badness 2261) in paragraph at lines 34726--34731 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 35846--35857 \T1/zi4/m/n/10 / / docs . microsoft . com / en-[]us / cpp / c-[]language / pars ing-[]c-[]command-[]line-[]arguments ? [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] Underfull \hbox (badness 10000) in paragraph at lines 37377--37379 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [574] Underfull \vbox (badness 10000) has occurred while \output is active [575] [576] [577] [578] [579] [580] Underfull \hbox (badness 2913) in paragraph at lines 37797--37801 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [581] [582] [583] Underfull \hbox (badness 1072) in paragraph at lines 38043--38047 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 38048--38052 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', [584] Underfull \hbox (badness 10000) in paragraph at lines 38088--38094 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 38088--38094 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 38088--38094 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 38103--38110 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 38103--38110 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [585] [586] [587] Underfull \hbox (badness 2644) in paragraph at lines 38338--38342 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [588] [589] [590] Underfull \hbox (badness 1142) in paragraph at lines 38491--38497 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] Underfull \hbox (badness 1158) in paragraph at lines 39792--39794 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [612] [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 1137) in paragraph at lines 40382--40388 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails [621] Underfull \hbox (badness 4967) in paragraph at lines 40401--40406 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [622] [623] Underfull \hbox (badness 1616) in paragraph at lines 40521--40526 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [624] [625] [626] [627] [628] [629] [630] [631] Underfull \hbox (badness 1472) in paragraph at lines 41068--41071 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] Underfull \hbox (badness 10000) in paragraph at lines 41994--41998 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/ m/n/10 length(bin) > [647] [648] [649] [650] Underfull \hbox (badness 10000) in paragraph at lines 42245--42248 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [651] [652] [653] Underfull \hbox (badness 10000) in paragraph at lines 42429--42433 [][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [654] [655] [656] [657] [658] [659] [660] [661] [662] Underfull \hbox (badness 10000) in paragraph at lines 43055--43058 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [663] [664] [665] [666] [667] Underfull \vbox (badness 3803) has occurred while \output is active [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 1990) in paragraph at lines 43977--43985 []\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43977--43985 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] [690] Underfull \hbox (badness 2452) in paragraph at lines 44946--44952 [][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 3668) in paragraph at lines 45344--45346 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [697] [698] Underfull \hbox (badness 2401) in paragraph at lines 45474--45478 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [699] [700] [701] Underfull \hbox (badness 2111) in paragraph at lines 45682--45687 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [702] [703] [704] [705] Underfull \hbox (badness 4001) in paragraph at lines 45928--45930 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [706] [707] [708] [709] [710] [711] Underfull \hbox (badness 5417) in paragraph at lines 46293--46297 []\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [712] Underfull \hbox (badness 10000) in paragraph at lines 46354--46358 []\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [713]) (./compiler-pkg.tex [714] Chapter 2. [715] [716] [717] [718]) (./datasets-pkg.tex Chapter 3. [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801]) (./grDevices-pkg.tex [802] Chapter 4. [803] [804] [805] [806] [807] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\ T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/ ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p tm/m/n/10 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i-fied as [818] [819] [820] [821] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [822] [823] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [824] [825] [826] [827] [828] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [ ][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T 1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1624--1628 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [829] [830] [831] [832] [833] [834] [835] Underfull \hbox (badness 1325) in paragraph at lines 2038--2048 []\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1 0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10 , [836] Underfull \hbox (badness 10000) in paragraph at lines 2150--2152 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [837] [838] [839] Underfull \hbox (badness 6758) in paragraph at lines 2329--2332 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 10000) in paragraph at lines 2940--2941 [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] Underfull \vbox (badness 3803) has occurred while \output is active [862] [863] [864] [865] Underfull \vbox (badness 3803) has occurred while \output is active [866] Underfull \hbox (badness 10000) in paragraph at lines 4016--4019 []\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10 give a C in-te-ger for-mat such as [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] Underfull \vbox (badness 3803) has occurred while \output is active [879] [880] Underfull \hbox (badness 1584) in paragraph at lines 4907--4909 []\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/ zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4911--4918 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [881] [882] [883] [884] Underfull \hbox (badness 1377) in paragraph at lines 5217--5222 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [885] Underfull \hbox (badness 1418) in paragraph at lines 5293--5300 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\ T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m /n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet ica-Narrow"[]\T1/ptm/m/n/10 , [886] Underfull \hbox (badness 1755) in paragraph at lines 5311--5313 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [887] Underfull \hbox (badness 1377) in paragraph at lines 5422--5427 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [888] Underfull \hbox (badness 7344) in paragraph at lines 5491--5493 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [889] Underfull \vbox (badness 3803) has occurred while \output is active [890] Underfull \hbox (badness 2035) in paragraph at lines 5629--5638 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5629--5638 \T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na rrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5629--5638 []\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi 4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m /n/10 , [891] [892] Underfull \hbox (badness 10000) in paragraph at lines 5697--5699 []\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [893] [894] Underfull \hbox (badness 1546) in paragraph at lines 5841--5849 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , [] \T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] [902] Underfull \hbox (badness 10000) in paragraph at lines 6379--6382 []\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [903] [904] Underfull \vbox (badness 3803) has occurred while \output is active [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] Underfull \hbox (badness 1189) in paragraph at lines 7208--7210 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [917] Underfull \hbox (badness 10000) in paragraph at lines 7313--7315 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [918] [919] [920] [921] [922] Underfull \hbox (badness 3780) in paragraph at lines 7627--7633 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n /10 "AvantGarde"[]\T1/ptm/m/n/10 , [923] [924] [925] [926] [927] [928]) (./graphics-pkg.tex Chapter 5. [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Overfull \hbox (12.71341pt too wide) in paragraph at lines 983--983 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [945] [946] [947] [948] [949] [950] Underfull \hbox (badness 4634) in paragraph at lines 1357--1360 [][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p tm/m/n/10 , [951] [952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] Underfull \hbox (badness 1728) in paragraph at lines 2335--2337 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [968] Underfull \hbox (badness 1009) in paragraph at lines 2428--2435 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] Underfull \vbox (badness 10000) has occurred while \output is active [992] Underfull \vbox (badness 10000) has occurred while \output is active [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] Underfull \hbox (badness 3229) in paragraph at lines 4652--4657 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1005] [1006] [1007] [1008] [1009] Underfull \hbox (badness 1107) in paragraph at lines 5081--5087 []\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch) , [1010] [1011] Underfull \hbox (badness 10000) in paragraph at lines 5210--5213 [1012 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5271--5273 Underfull \vbox (badness 10000) has occurred while \output is active [1013] [1014 >/library/graphics/help/figures//oma.pdf >] [1015] [1016] Underfull \vbox (badness 3803) has occurred while \output is active [1017] [1018] [1019] [1020] [1021] [1022] [1023]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.plot}) has been already used, duplicate ignored \relax l.5943 \aliasA{plot}{plot.default}{plot} [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6848--6849 [][] [1038 >/library/graphics/help/figures//pch.pdf >] [1039] Underfull \vbox (badness 3803) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 4954) in paragraph at lines 8936--8938 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /n/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 8938--8940 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par (c("font.lab", "cex.lab", [1073]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.9018 \HeaderA{units}{Graphical Units}{units} [1074] [1075] [1076] [1077]) (./grid-pkg.tex [1078] Chapter 6. [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 2680) in paragraph at lines 550--553 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c u-la-tion of [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \hbox (badness 4279) in paragraph at lines 1187--1196 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 , [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] Underfull \hbox (badness 10000) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] Underfull \vbox (badness 10000) has occurred while \output is active [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] Underfull \hbox (badness 1067) in paragraph at lines 4761--4764 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1160] [1161] [1162] [1163] [1164] [1165] Underfull \hbox (badness 7256) in paragraph at lines 5112--5114 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1166] [1167] [1168] [1169] [1170] [1171] [1172] Underfull \hbox (badness 2142) in paragraph at lines 5561--5565 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1 0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1173] [1174] Underfull \hbox (badness 4699) in paragraph at lines 5632--5637 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206]) (./methods-pkg.tex Chapter 7. [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] Underfull \vbox (badness 10000) has occurred while \output is active [1215] Underfull \vbox (badness 10000) has occurred while \output is active [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1 0 "package"[]\T1/ptm/m/n/10 , also of class [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m /n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1235] [1236] [1237] Underfull \hbox (badness 2213) in paragraph at lines 2213--2218 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/n/10 where = [1238] [1239] [1240] [1241] [1242] Underfull \hbox (badness 10000) in paragraph at lines 2573--2576 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class [1243] [1244] Underfull \hbox (badness 1132) in paragraph at lines 2713--2717 []\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4 /m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl ot of the re-turned re-sult is in [1245] Underfull \hbox (badness 1033) in paragraph at lines 2745--2750 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 re-stores the [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 1102) in paragraph at lines 3302--3304 []\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1253] [1254] [1255] [1256] [1257] [1258] Underfull \hbox (badness 10000) in paragraph at lines 3641--3650 []\T1/ptm/m/n/10 The [1259] Underfull \hbox (badness 10000) in paragraph at lines 3761--3762 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = "numeric", [1260] Underfull \hbox (badness 10000) in paragraph at lines 3845--3846 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 1769) in paragraph at lines 4476--4482 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4476--4482 []\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [] [][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use d by [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \vbox (badness 10000) has occurred while \output is active [1281] [1282] [1283] Underfull \hbox (badness 4036) in paragraph at lines 5445--5448 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/ n/10 the method to use in re-sponse to a [1284] [1285] Underfull \hbox (badness 3803) in paragraph at lines 5520--5522 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1286] [1287] [1288] Underfull \hbox (badness 1087) in paragraph at lines 5752--5757 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] Underfull \hbox (badness 1675) in paragraph at lines 6459--6465 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1298] [1299] [1300] [1301] Underfull \vbox (badness 10000) has occurred while \output is active [1302] [1303] [1304]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6981 \aliasA{S4}{S3Part}{S4} [1305] [1306] [1307]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7237 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7239 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7240 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7242 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7243 \aliasA{Summary}{S4groupGeneric}{Summary} [1308] Underfull \hbox (badness 2050) in paragraph at lines 7304--7308 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1309] [1310] [1311] Underfull \hbox (badness 1286) in paragraph at lines 7492--7494 []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t yp-i-cally [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] Underfull \vbox (badness 10000) has occurred while \output is active [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 1852) in paragraph at lines 10572--10576 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1354] [1355] [1356] [1357]) (./parallel-pkg.tex [1358] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1359] [1360] [1361] [1362] [1363] Underfull \hbox (badness 1320) in paragraph at lines 301--304 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] Underfull \hbox (badness 3386) in paragraph at lines 1402--1405 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the [1381] [1382] [1383]) (./splines-pkg.tex [1384] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400]) (./stats-pkg.tex Chapter 10. [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] Underfull \hbox (badness 1412) in paragraph at lines 887--889 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 2503) in paragraph at lines 1369--1372 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \hbox (badness 2503) in paragraph at lines 3530--3533 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] Underfull \hbox (badness 3989) in paragraph at lines 4787--4794 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] Underfull \hbox (badness 2556) in paragraph at lines 5424--5427 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[] \T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi lter"[]\T1/ptm/m/n/10 . For [1487] [1488] [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 2503) in paragraph at lines 5838--5842 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 7081) in paragraph at lines 6632--6635 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6636--6638 []\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] Underfull \hbox (badness 10000) in paragraph at lines 7493--7496 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \vbox (badness 10000) has occurred while \output is active [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 2626) in paragraph at lines 9172--9175 []\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1547] [1548] Underfull \hbox (badness 2503) in paragraph at lines 9279--9283 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] Underfull \hbox (badness 4518) in paragraph at lines 10631--10636 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1570] [1571] [1572] [1573] [1574] Underfull \hbox (badness 2142) in paragraph at lines 10992--10995 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11011--11014 []\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-er-a-tion. Hence, [1575] Underfull \hbox (badness 1708) in paragraph at lines 11073--11077 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1576] [1577] [1578] [1579] [1580] [1581] Underfull \hbox (badness 1694) in paragraph at lines 11469--11472 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11950 \aliasA{hat}{influence.measures}{hat} [1590] [1591] Underfull \hbox (badness 1484) in paragraph at lines 12092--12094 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 10000) in paragraph at lines 12694--12696 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit = [1602] [1603] [1604] [1605] [1606] [1607] Underfull \hbox (badness 2894) in paragraph at lines 13030--13034 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 1496) in paragraph at lines 13444--13450 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1614] [1615] [1616] [1617] [1618] [1619] [1620] Underfull \hbox (badness 4518) in paragraph at lines 13842--13847 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 4518) in paragraph at lines 14503--14508 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1631] [1632] Underfull \hbox (badness 6412) in paragraph at lines 14641--14645 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte rpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14648--14650 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] Underfull \hbox (badness 2503) in paragraph at lines 15724--15728 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1651] [1652] Underfull \vbox (badness 10000) has occurred while \output is active [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 10000) in paragraph at lines 16237--16243 []\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/ 10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16237--16243 []\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/ ptm/m/n/10 sums any terms [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] Underfull \hbox (badness 1158) in paragraph at lines 17888--17891 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1 /ptm/m/n/10 as the data ar-gu-ment. The ac- [1686] [1687] Underfull \vbox (badness 3803) has occurred while \output is active [1688] Underfull \vbox (badness 10000) has occurred while \output is active [1689] Underfull \vbox (badness 10000) has occurred while \output is active [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] Underfull \hbox (badness 1377) in paragraph at lines 18915--18920 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18920--18923 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18933--18937 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18933--18937 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18941--18945 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T 1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1 0 "SANN" []\T1/ptm/m/n/10 meth-ods if [1704] [1705] [1706] Underfull \vbox (badness 10000) has occurred while \output is active [1707] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19166--19166 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19169--19169 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1708] [1709] [1710] [1711] [1712] [1713] [1714] Underfull \hbox (badness 1337) in paragraph at lines 19628--19631 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] Underfull \hbox (badness 10000) in paragraph at lines 20099--20105 \T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty = cook.lty, col = cook.col, text.col [1724] [1725] [1726] [1727] [1728] Underfull \hbox (badness 1194) in paragraph at lines 20429--20432 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1729] [1730] [1731] [1732] [1733] [1734] Underfull \hbox (badness 2503) in paragraph at lines 20808--20811 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1735] Underfull \hbox (badness 3919) in paragraph at lines 20835--20837 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] Underfull \hbox (badness 10000) in paragraph at lines 21913--21919 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 23270--23276 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 1436) in paragraph at lines 23695--23698 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2, [1784] Underfull \hbox (badness 10000) in paragraph at lines 23836--23837 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 1824) in paragraph at lines 24808--24814 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f irst re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24808--24814 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1801] Underfull \hbox (badness 10000) in paragraph at lines 24829--24832 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] = [1802] Underfull \vbox (badness 3803) has occurred while \output is active [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] Underfull \hbox (badness 2165) in paragraph at lines 25410--25415 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1 /ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1811] [1812] [1813] [1814] Underfull \hbox (badness 1867) in paragraph at lines 25619--25621 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25634--25638 []\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <- [1815] [1816] [1817] [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] [1834] [1835] [1836] [1837] [1838] [1839] Underfull \vbox (badness 10000) has occurred while \output is active [1840] [1841] Underfull \hbox (badness 3514) in paragraph at lines 27282--27287 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1842] [1843] [1844] [1845] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27516--27516 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27552--27558 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1846] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27609--27609 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27611--27611 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1847] [1848] [1849] Underfull \hbox (badness 3514) in paragraph at lines 27785--27790 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1850] [1851] Underfull \hbox (badness 3514) in paragraph at lines 27872--27877 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1852] Underfull \hbox (badness 3514) in paragraph at lines 27937--27942 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1853] [1854] Underfull \hbox (badness 3514) in paragraph at lines 28031--28036 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1855] [1856] Underfull \hbox (badness 6691) in paragraph at lines 28123--28128 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] Underfull \hbox (badness 4024) in paragraph at lines 28614--28617 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 5431) in paragraph at lines 29220--29222 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1875] [1876] [1877] Underfull \hbox (badness 5431) in paragraph at lines 29430--29433 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1878] [1879] [1880] [1881] [1882] [1883] Underfull \hbox (badness 1337) in paragraph at lines 29745--29749 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1884] [1885] [1886] [1887] [1888] Underfull \hbox (badness 1616) in paragraph at lines 30057--30060 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 3557) in paragraph at lines 31192--31196 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[ ]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect []\T1/zi4/m/n/10 interval = [1908] [1909] [1910] Underfull \vbox (badness 10000) has occurred while \output is active [1911] [1912] [1913] Underfull \hbox (badness 1337) in paragraph at lines 31556--31560 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] Underfull \hbox (badness 1337) in paragraph at lines 32085--32089 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1923] [1924] [1925] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32292--32292 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1926] [1927] [1928] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32453--32453 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1929] [1930] [1931] [1932] [1933]) (./stats4-pkg.tex [1934] Chapter 11. [1935] [1936] [1937] Underfull \vbox (badness 10000) has occurred while \output is active [1938] Underfull \vbox (badness 10000) has occurred while \output is active [1939] [1940] [1941] [1942]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1943] [1944] [1945]) (./tcltk-pkg.tex [1946] Chapter 12. [1947] [1948] [1949] [1950] [1951] [1952] [1953] Underfull \vbox (badness 10000) has occurred while \output is active [1954] Underfull \vbox (badness 10000) has occurred while \output is active [1955] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning [1956] [1957] [1958] [1959] [1960] Underfull \vbox (badness 10000) has occurred while \output is active [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968]) (./tools-pkg.tex Chapter 13. [1969] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1970] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1971] [1972] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi 4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and [1973] [1974] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1975] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1988] Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 []\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [ ]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1989] [1990] [1991] [1992] [1993] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() []\T1/ptm/m/n/10 is now dep-re-cated, wit h its func-tion-al-ity in-te-grated into that of [1994] [1995] Underfull \hbox (badness 4096) in paragraph at lines 1707--1715 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1996] [1997] [1998] [1999]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2000] [2001] [2002] [2003] [2004] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [2005] [2006] [2007] Underfull \hbox (badness 4096) in paragraph at lines 2391--2399 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2008] [2009] [2010] [2011] [2012] [2013] [2014] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [2015] [2016] [2017] [2018] [2019] Underfull \hbox (badness 1424) in paragraph at lines 3188--3190 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2020] [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2031] [2032] Underfull \hbox (badness 10000) in paragraph at lines 4029--4032 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2033] [2034] Underfull \hbox (badness 1137) in paragraph at lines 4131--4133 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [2035] [2036] [2037] [2038] [2039] Underfull \hbox (badness 1796) in paragraph at lines 4439--4444 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = [2040] Underfull \hbox (badness 4699) in paragraph at lines 4489--4493 []\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 msgmerge []\T1/ptm/m/n/10 in ad-di-tion to Underfull \hbox (badness 1946) in paragraph at lines 4489--4493 []\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m /n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called from Underfull \hbox (badness 1838) in paragraph at lines 4517--4523 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4517--4523 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2041] [2042] [2043] [2044] [2045] Underfull \hbox (badness 2197) in paragraph at lines 4792--4802 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 1571) in paragraph at lines 4858--4862 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2046] [2047] [2048] [2049]) (./utils-pkg.tex [2050] Chapter 14. [2051] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] Underfull \hbox (badness 10000) in paragraph at lines 726--732 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 726--732 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2062] [2063] [2064] Underfull \hbox (badness 3861) in paragraph at lines 931--936 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2065] [2066] [2067] Underfull \hbox (badness 3323) in paragraph at lines 1115--1123 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use []\T1/zi4/m/it /10 bibtex = T|F []\T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m $\T1/ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 2875) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 taken as [][][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex. max", 1) []\T1/ptm/m/n/10 which is []\T1/zi4/m/it/10 1 []\T1/ptm/m/n/10 typ-i-c ally. Underfull \hbox (badness 1817) in paragraph at lines 1115--1123 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1127--1129 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1371) in paragraph at lines 1637--1639 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2076] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1707. [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] Underfull \hbox (badness 2057) in paragraph at lines 2358--2360 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2087] [2088] [2089] [2090] [2091] [2092]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig nored \relax l.2709 ... the Clipboard in MS Windows}{clipboard} [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] Underfull \hbox (badness 6842) in paragraph at lines 4006--4011 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2113] Underfull \hbox (badness 1430) in paragraph at lines 4069--4077 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2114] [2115] [2116] Underfull \hbox (badness 10000) in paragraph at lines 4274--4276 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4983 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4983 ...mat Unordered and Ordered Lists}{format} [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] Underfull \hbox (badness 1622) in paragraph at lines 5506--5510 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2137] [2138] [2139] [2140] [2141] [2142] Underfull \hbox (badness 1448) in paragraph at lines 5885--5890 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6431. Underfull \hbox (badness 1371) in paragraph at lines 6435--6437 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2151] Underfull \hbox (badness 1502) in paragraph at lines 6524--6529 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6524--6529 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2152] [2153] [2154] Underfull \hbox (badness 10000) in paragraph at lines 6697--6706 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2155] Underfull \hbox (badness 2150) in paragraph at lines 6761--6764 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2156] [2157] Underfull \hbox (badness 3118) in paragraph at lines 6900--6902 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2158] [2159] [2160] Underfull \hbox (badness 1325) in paragraph at lines 7079--7083 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2161] Underfull \hbox (badness 1424) in paragraph at lines 7171--7174 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2162] Underfull \hbox (badness 3219) in paragraph at lines 7242--7249 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7242--7249 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7242--7249 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7242--7249 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7250--7253 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2163] Underfull \hbox (badness 1024) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2164] Underfull \hbox (badness 10000) in paragraph at lines 7410--7415 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174] [2175] [2176] Underfull \hbox (badness 10000) in paragraph at lines 8114--8116 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] Underfull \hbox (badness 2310) in paragraph at lines 8874--8879 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] Underfull \hbox (badness 1248) in paragraph at lines 9400--9404 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2197] Underfull \hbox (badness 1789) in paragraph at lines 9480--9482 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210] Underfull \hbox (badness 1097) in paragraph at lines 10317--10320 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2211] [2212] Underfull \hbox (badness 3000) in paragraph at lines 10453--10458 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] Underfull \hbox (badness 2134) in paragraph at lines 11042--11047 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2222] Underfull \hbox (badness 10000) in paragraph at lines 11098--11103 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11098--11103 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] Underfull \hbox (badness 2469) in paragraph at lines 11592--11596 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11592--11596 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . 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replaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.default.stringsAsFactors} has been referenced b ut does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} {/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/ usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc} Output written on fullrefman.pdf (2413 pages, 6528244 bytes). Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 642--645 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 642--645 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 642--645 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 669--674 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 353701 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 642--645 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 642--645 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 642--645 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 669--674 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 369887 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 642--645 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 642--645 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 642--645 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 669--674 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 369885 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] Underfull \hbox (badness 10000) in paragraph at lines 1420--1426 @textrm (@texttt https:// cran. r-project. org/ bin/ windows/ Rtools/ rt ools42/ rtools. html[]@textrm )[][]. [17] [18] Chapter 4 [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1743--1753 @texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex trm , @texttt org.r-project.x86_ Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1888--1888 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2117--2125 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- Underfull \hbox (badness 10000) in paragraph at lines 2117--2125 @textrm pack-ages (@texttt https:// cran. r-project. org/ bin/ windows/ b ase/ howto-R-4. 2. html[]@textrm )[][] for [26] [27] [28] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2337--2337 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [29] [30] [31] [32] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2648--2648 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2668--2668 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2669--2669 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] [33] Chapter 7 [34] [35] [36] Chapter 8 [37] Chapter 9 [38] [39] [40] Appendix A [41] [42] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3307--3307 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [43] [44] [45] [46] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3594--3594 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58] [59] Appendix C [60] [61] [62] [63] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4894--4894 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSER TIONS[] [64] [65] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5080--5080 []@texttt curl -OL https://mac.r-project.org/bin/darwin17/x86_64/pcre2-10.39-d arwin.17-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5082--5082 []@texttt curl -OL https://mac.r-project.org/bin/darwin17/x86_64/xz-5.2.5-darw in.17-x86_64.tar.xz[] [66] Overfull \hbox (66.67995pt too wide) in paragraph at lines 5166--5166 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5183--5183 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [67] Underfull \hbox (badness 10000) in paragraph at lines 5211--5215 @texttt releases/ download/ 11. 2-bigsur-intel/ gfortran-Intel-11. 2-BigSu r. dmg[][][] @textrm and for Overfull \hbox (38.79282pt too wide) in paragraph at lines 5218--5219 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [68] Overfull \hbox (106.92076pt too wide) in paragraph at lines 5284--5284 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [69] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5389--5389 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| [70] [71] Underfull \hbox (badness 10000) in paragraph at lines 5532--5536 []@textrm To use Java (specif-i-cally, pack-age [][]@textbf rJava @textrm (@tex ttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 5537--5542 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (14.94176pt too wide) in paragraph at lines 5553--5553 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5562--5571 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][][] @textrm and [72] [73] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5687--5687 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli b \[] Overfull \hbox (36.62297pt too wide) in paragraph at lines 5705--5705 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 6842) in paragraph at lines 5707--5713 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5707--5713 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Overfull \hbox (43.6852pt too wide) in paragraph at lines 5740--5740 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [74] Underfull \hbox (badness 10000) in paragraph at lines 5759--5773 @texttt org/ libs-arm64/ [][][] @textrm and [][]@texttt https:// github. co m/ fxcoudert/ gfortran-for-macOS/ Overfull \hbox (32.18782pt too wide) in paragraph at lines 5796--5796 []@texttt curl -OL https://mac.r-project.org/libs-arm64/jpeg-9d-darwin.20-arm6 4.tar.gz[] [75] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5848--5848 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| [76] (Function and variable index) [77] No file R-admin.vrs. (Concept index) [78] No file R-admin.cps. (Environment variable index) [79] No file R-admin.ens. [80] ) (see the transcript file for additional information) Output written on R-admin.pdf (83 pages, 475568 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] Underfull \hbox (badness 10000) in paragraph at lines 1420--1426 @textrm (@texttt https:// cran. r-project. org/ bin/ windows/ Rtools/ rt ools42/ rtools. html[]@textrm )[][]. [17] [18] Chapter 4 [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1743--1753 @texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex trm , @texttt org.r-project.x86_ Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1888--1888 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2117--2125 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- Underfull \hbox (badness 10000) in paragraph at lines 2117--2125 @textrm pack-ages (@texttt https:// cran. r-project. org/ bin/ windows/ b ase/ howto-R-4. 2. html[]@textrm )[][] for [26] [27] [28] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2337--2337 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [29] [30] [31] [32] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2648--2648 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2668--2668 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2669--2669 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] [33] Chapter 7 [34] [35] [36] Chapter 8 [37] Chapter 9 [38] [39] [40] Appendix A [41] [42] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3307--3307 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [43] [44] [45] [46] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3594--3594 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58] [59] Appendix C [60] [61] [62] [63] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4894--4894 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSER TIONS[] [64] [65] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5080--5080 []@texttt curl -OL https://mac.r-project.org/bin/darwin17/x86_64/pcre2-10.39-d arwin.17-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5082--5082 []@texttt curl -OL https://mac.r-project.org/bin/darwin17/x86_64/xz-5.2.5-darw in.17-x86_64.tar.xz[] [66] Overfull \hbox (66.67995pt too wide) in paragraph at lines 5166--5166 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5183--5183 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [67] Underfull \hbox (badness 10000) in paragraph at lines 5211--5215 @texttt releases/ download/ 11. 2-bigsur-intel/ gfortran-Intel-11. 2-BigSu r. dmg[][][] @textrm and for Overfull \hbox (38.79282pt too wide) in paragraph at lines 5218--5219 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [68] Overfull \hbox (106.92076pt too wide) in paragraph at lines 5284--5284 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [69] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5389--5389 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| [70] [71] Underfull \hbox (badness 10000) in paragraph at lines 5532--5536 []@textrm To use Java (specif-i-cally, pack-age [][]@textbf rJava @textrm (@tex ttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 5537--5542 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (14.94176pt too wide) in paragraph at lines 5553--5553 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5562--5571 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][][] @textrm and [72] [73] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5687--5687 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli b \[] Overfull \hbox (36.62297pt too wide) in paragraph at lines 5705--5705 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 6842) in paragraph at lines 5707--5713 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5707--5713 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Overfull \hbox (43.6852pt too wide) in paragraph at lines 5740--5740 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [74] Underfull \hbox (badness 10000) in paragraph at lines 5759--5773 @texttt org/ libs-arm64/ [][][] @textrm and [][]@texttt https:// github. co m/ fxcoudert/ gfortran-for-macOS/ Overfull \hbox (32.18782pt too wide) in paragraph at lines 5796--5796 []@texttt curl -OL https://mac.r-project.org/libs-arm64/jpeg-9d-darwin.20-arm6 4.tar.gz[] [75] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5848--5848 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| [76] (Function and variable index) [77] (/<>/doc/manual/R-admin.vrs) (Concept index) [78] (/<>/doc/manual/R-admin.cps) (Environment variable index) [79] (/<>/doc/manual/R-admin.ens) [80] ) (see the transcript file for additional information) Output written on R-admin.pdf (85 pages, 519398 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1] Chapter 1 [2] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 434--437 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. ibm. com/ software/ data/ informix/ []@te xtrm )[][]; [][]Oracle (@texttt https:// www. oracle. [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1793--1799 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] No file R-data.vrs. (Concept index) [34] No file R-data.cps. [35] ) (see the transcript file for additional information) Output written on R-data.pdf (38 pages, 269300 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 434--437 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. ibm. com/ software/ data/ informix/ []@te xtrm )[][]; [][]Oracle (@texttt https:// www. oracle. [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1793--1799 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/<>/doc/manual/R-data.vrs [34]) (Concept index) [35] (/<>/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 309051 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 434--437 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. ibm. com/ software/ data/ informix/ []@te xtrm )[][]; [][]Oracle (@texttt https:// www. oracle. [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1793--1799 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/<>/doc/manual/R-data.vrs [34]) (Concept index) [35] (/<>/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 309054 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 500--503 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1538--1538 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1539--1539 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1540--1540 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [20] Underfull \hbox (badness 10000) in paragraph at lines 1571--1578 @texttt org/ package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @ textrm (@texttt https:// CRAN. R-project. org/ [21] [22] [23] [24] [25] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1963--1963 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th e status[] [26] [27] [28] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2195--2195 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 2365--2367 [][][][][]@smalltt https:// www. openmp. org/ [][][]@smallrm , [][]@smalltt https:// en. wikipedia. org/ wiki/ OpenMP[][][]@smallrm , [][]@smalltt ht tps:// hpc. llnl. gov/ [31] [32] [33] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2597--2597 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2599--2599 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [34] [35] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2737--2737 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [36] [37] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2912--2912 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 7221) in paragraph at lines 2935--2941 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [38] [39] [40] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3115--3115 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] Overfull \hbox (2.98494pt too wide) in paragraph at lines 3147--3149 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4492--4492 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [58] [59] [60] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4717--4717 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4736--4736 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [61] [62] [63] [64] [65] [66] Overfull \hbox (30.87428pt too wide) in paragraph at lines 5168--5168 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19 20)[] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5178--5178 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5180--5180 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5181--5181 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5196--5196 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [67] [68] [69] [70] [71] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5540--5540 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 5700--5703 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [74] Overfull \hbox (19.3769pt too wide) in paragraph at lines 5793--5793 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [75] [76] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5921--5921 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [77] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5969--5969 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] Underfull \hbox (badness 10000) in paragraph at lines 6020--6021 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [78] [79] [80] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6261--6261 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [81] [82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] Underfull \hbox (badness 10000) in paragraph at lines 7523--7530 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [98] [99] [100] [101] [102] [103] Chapter 3 [104] [105] [106] [107] [108] [109] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8447--8447 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [110] [111] Chapter 4 [112] [113] [114] [115] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8812--8812 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [116] Overfull \hbox (25.25755pt too wide) in paragraph at lines 8853--8853 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [117] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8957--8957 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8987--8996 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 9256--9268 @texttt controlling-code-generation[][][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9272--9273 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [122] [123] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9410--9410 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9443--9445 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [124] Underfull \hbox (badness 10000) in paragraph at lines 9531--9535 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][][] [125] Overfull \hbox (2.03816pt too wide) in paragraph at lines 9566--9570 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. Overfull \hbox (72.42863pt too wide) in paragraph at lines 9589--9589 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9634--9634 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9637--9637 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [127] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9716--9716 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [128] [129] [130] Underfull \hbox (badness 10000) in paragraph at lines 9958--9960 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [131] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10015--10015 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10034--10034 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10045--10045 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10065--10065 [] @tex ttt 1[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10074--10074 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10075--10075 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (30.87428pt too wide) in paragraph at lines 10859--10859 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 10922--10922 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [144] [145] [146] [147] [148] [149] [150] [151] Overfull \hbox (37.93651pt too wide) in paragraph at lines 11500--11500 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12360--12360 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [163] Underfull \hbox (badness 10000) in paragraph at lines 12510--12514 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [164] [165] [166] [167] [168] [169] [170] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13071--13071 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [171] [172] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13195--13195 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [173] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13200--13200 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13255--13255 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13268--13268 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [174] Overfull \hbox (26.43913pt too wide) in paragraph at lines 13367--13367 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13516--13516 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [177] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13606--13606 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [178] [179] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13701--13701 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [180] [181] [182] [183] [184] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14430--14430 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 10000) in paragraph at lines 15166--15170 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [197] [198] Warning: unbalanced parentheses in @def... [199] [200] Overfull \hbox (26.43913pt too wide) in paragraph at lines 15389--15389 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [201] [202] [203] [204] [205] Chapter 7 [206] [207] Chapter 8 [208] [209] [210] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16149--16149 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [211] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16192--16192 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16207--16207 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [212] [213] [214] [215] [216] [217] [218] [219] [220] Underfull \hbox (badness 10000) in paragraph at lines 16857--16861 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [221] No file R-exts.vrs. (Concept index) [222] No file R-exts.cps. [223] ) (see the transcript file for additional information) Output written on R-exts.pdf (226 pages, 969333 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 500--503 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1538--1538 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1539--1539 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1540--1540 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [20] Underfull \hbox (badness 10000) in paragraph at lines 1571--1578 @texttt org/ package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @ textrm (@texttt https:// CRAN. R-project. org/ [21] [22] [23] [24] [25] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1963--1963 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th e status[] [26] [27] [28] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2195--2195 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 2365--2367 [][][][][]@smalltt https:// www. openmp. org/ [][][]@smallrm , [][]@smalltt https:// en. wikipedia. org/ wiki/ OpenMP[][][]@smallrm , [][]@smalltt ht tps:// hpc. llnl. gov/ [31] [32] [33] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2597--2597 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2599--2599 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [34] [35] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2737--2737 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [36] [37] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2912--2912 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 7221) in paragraph at lines 2935--2941 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [38] [39] [40] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3115--3115 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] Overfull \hbox (2.98494pt too wide) in paragraph at lines 3147--3149 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4492--4492 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [58] [59] [60] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4717--4717 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4736--4736 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [61] [62] [63] [64] [65] [66] Overfull \hbox (30.87428pt too wide) in paragraph at lines 5168--5168 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19 20)[] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5178--5178 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5180--5180 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5181--5181 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5196--5196 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [67] [68] [69] [70] [71] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5540--5540 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 5700--5703 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [74] Overfull \hbox (19.3769pt too wide) in paragraph at lines 5793--5793 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [75] [76] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5921--5921 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [77] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5969--5969 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] Underfull \hbox (badness 10000) in paragraph at lines 6020--6021 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [78] [79] [80] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6261--6261 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [81] [82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] Underfull \hbox (badness 10000) in paragraph at lines 7523--7530 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [98] [99] [100] [101] [102] [103] Chapter 3 [104] [105] [106] [107] [108] [109] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8447--8447 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [110] [111] Chapter 4 [112] [113] [114] [115] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8812--8812 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [116] Overfull \hbox (25.25755pt too wide) in paragraph at lines 8853--8853 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [117] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8957--8957 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8987--8996 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 9256--9268 @texttt controlling-code-generation[][][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9272--9273 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [122] [123] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9410--9410 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9443--9445 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [124] Underfull \hbox (badness 10000) in paragraph at lines 9531--9535 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][][] [125] Overfull \hbox (2.03816pt too wide) in paragraph at lines 9566--9570 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. Overfull \hbox (72.42863pt too wide) in paragraph at lines 9589--9589 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9634--9634 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9637--9637 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [127] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9716--9716 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [128] [129] [130] Underfull \hbox (badness 10000) in paragraph at lines 9958--9960 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [131] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10015--10015 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10034--10034 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10045--10045 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10065--10065 [] @tex ttt 1[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10074--10074 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10075--10075 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (30.87428pt too wide) in paragraph at lines 10859--10859 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 10922--10922 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [144] [145] [146] [147] [148] [149] [150] [151] Overfull \hbox (37.93651pt too wide) in paragraph at lines 11500--11500 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12360--12360 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [163] Underfull \hbox (badness 10000) in paragraph at lines 12510--12514 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [164] [165] [166] [167] [168] [169] [170] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13071--13071 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [171] [172] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13195--13195 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [173] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13200--13200 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13255--13255 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13268--13268 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [174] Overfull \hbox (26.43913pt too wide) in paragraph at lines 13367--13367 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13516--13516 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [177] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13606--13606 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [178] [179] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13701--13701 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [180] [181] [182] [183] [184] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14430--14430 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 10000) in paragraph at lines 15166--15170 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [197] [198] Warning: unbalanced parentheses in @def... [199] [200] Overfull \hbox (26.43913pt too wide) in paragraph at lines 15389--15389 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [201] [202] [203] [204] Chapter 7 [205] [206] Chapter 8 [207] [208] [209] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16149--16149 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [210] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16192--16192 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16207--16207 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [211] [212] [213] [214] [215] [216] [217] [218] [219] Underfull \hbox (badness 10000) in paragraph at lines 16857--16861 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [220] (/<>/doc/manual/R-exts.vrs [221] [222] [223] [224]) (Concept index) [225] (/<>/doc/manual/R-exts.cps [226]) [227] ) (see the transcript file for additional information) Output written on R-exts.pdf (234 pages, 1046547 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 500--503 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1538--1538 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1539--1539 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1540--1540 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [20] Underfull \hbox (badness 10000) in paragraph at lines 1571--1578 @texttt org/ package=amap[]@textrm )[][]), Python or Tcl ([][]@textbf Simile @ textrm (@texttt https:// CRAN. R-project. org/ [21] [22] [23] [24] [25] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1963--1963 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th e status[] [26] [27] [28] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2195--2195 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 2365--2367 [][][][][]@smalltt https:// www. openmp. org/ [][][]@smallrm , [][]@smalltt https:// en. wikipedia. org/ wiki/ OpenMP[][][]@smallrm , [][]@smalltt ht tps:// hpc. llnl. gov/ [31] [32] [33] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2597--2597 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2599--2599 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [34] [35] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2737--2737 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [36] [37] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2912--2912 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 7221) in paragraph at lines 2935--2941 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [38] [39] [40] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3115--3115 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] Overfull \hbox (2.98494pt too wide) in paragraph at lines 3147--3149 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4492--4492 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [58] [59] [60] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4717--4717 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4736--4736 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [61] [62] [63] [64] [65] [66] Overfull \hbox (30.87428pt too wide) in paragraph at lines 5168--5168 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19 20)[] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5178--5178 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5180--5180 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5181--5181 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5196--5196 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [67] [68] [69] [70] [71] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5540--5540 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 5700--5703 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [74] Overfull \hbox (19.3769pt too wide) in paragraph at lines 5793--5793 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [75] [76] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5921--5921 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [77] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5969--5969 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] Underfull \hbox (badness 10000) in paragraph at lines 6020--6021 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [78] [79] [80] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6261--6261 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [81] [82] [83] Chapter 2 [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] Underfull \hbox (badness 10000) in paragraph at lines 7523--7530 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [98] [99] [100] [101] [102] [103] Chapter 3 [104] [105] [106] [107] [108] [109] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8447--8447 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [110] [111] Chapter 4 [112] [113] [114] [115] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8812--8812 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [116] Overfull \hbox (25.25755pt too wide) in paragraph at lines 8853--8853 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [117] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8957--8957 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8987--8996 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 9256--9268 @texttt controlling-code-generation[][][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9272--9273 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [122] [123] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9410--9410 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9443--9445 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [124] Underfull \hbox (badness 10000) in paragraph at lines 9531--9535 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][][] [125] Overfull \hbox (2.03816pt too wide) in paragraph at lines 9566--9570 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. Overfull \hbox (72.42863pt too wide) in paragraph at lines 9589--9589 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9634--9634 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9637--9637 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [127] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9716--9716 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [128] [129] [130] Underfull \hbox (badness 10000) in paragraph at lines 9958--9960 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [131] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10015--10015 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10034--10034 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10045--10045 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10065--10065 [] @tex ttt 1[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10074--10074 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10075--10075 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (30.87428pt too wide) in paragraph at lines 10859--10859 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 10922--10922 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [144] [145] [146] [147] [148] [149] [150] [151] Overfull \hbox (37.93651pt too wide) in paragraph at lines 11500--11500 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12360--12360 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [163] Underfull \hbox (badness 10000) in paragraph at lines 12510--12514 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [164] [165] [166] [167] [168] [169] [170] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13071--13071 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [171] [172] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13195--13195 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [173] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13200--13200 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13255--13255 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13268--13268 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [174] Overfull \hbox (26.43913pt too wide) in paragraph at lines 13367--13367 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13516--13516 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [177] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13606--13606 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [178] [179] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13701--13701 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [180] [181] [182] [183] [184] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14430--14430 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 14442--14447 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [188] [189] [190] [191] [192] [193] [194] [195] [196] Underfull \hbox (badness 10000) in paragraph at lines 15166--15170 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [197] [198] Warning: unbalanced parentheses in @def... [199] [200] Overfull \hbox (26.43913pt too wide) in paragraph at lines 15389--15389 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [201] [202] [203] [204] Chapter 7 [205] [206] Chapter 8 [207] [208] [209] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16149--16149 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [210] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16192--16192 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16207--16207 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [211] [212] [213] [214] [215] [216] [217] [218] [219] Underfull \hbox (badness 10000) in paragraph at lines 16857--16861 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [220] (/<>/doc/manual/R-exts.vrs [221] [222] [223] [224]) (Concept index) [225] (/<>/doc/manual/R-exts.cps [226]) [227] ) (see the transcript file for additional information) Output written on R-exts.pdf (234 pages, 1046528 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4842--4844 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5257--5267 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5737--5737 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6443--6448 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6644--6649 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] No file R-intro.vrs. Appendix E [102] No file R-intro.cps. Appendix F [103] [104] ) (see the transcript file for additional information) Output written on R-intro.pdf (107 pages, 574816 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4842--4844 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5257--5267 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5737--5737 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6443--6448 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6644--6649 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/<>/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/<>/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 631879 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4842--4844 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5257--5267 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5737--5737 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6443--6448 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6644--6649 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/<>/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/<>/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 631943 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1501--1501 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1502--1502 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1503--1503 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1504--1504 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2022--2022 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3819--3823 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[][] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] [62] [63] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4628--4628 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve rbose[] [64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69] [70] (Function and variable index) [71] [72] No file R-ints.vrs. (Concept index) [73] No file R-ints.cps. [74] ) (see the transcript file for additional information) Output written on R-ints.pdf (77 pages, 416567 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1501--1501 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1502--1502 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1503--1503 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1504--1504 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2022--2022 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3819--3823 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[][] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] [62] [63] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4628--4628 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve rbose[] [64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69] [70] (Function and variable index) [71] [72] (/<>/doc/manual/R-ints.vrs [73] [74]) (Concept index) [75] (/<>/doc/manual/R-ints.cps) [76] ) (see the transcript file for additional information) Output written on R-ints.pdf (81 pages, 468957 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1501--1501 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1502--1502 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1503--1503 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1504--1504 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2022--2022 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3768--3777 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3819--3823 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[][] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4139--4147 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] [62] [63] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4628--4628 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve rbose[] [64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69] [70] (Function and variable index) [71] [72] (/<>/doc/manual/R-ints.vrs [73] [74]) (Concept index) [75] (/<>/doc/manual/R-ints.cps) [76] ) (see the transcript file for additional information) Output written on R-ints.pdf (81 pages, 468948 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] No file R-lang.vrs. (Concept Index) [60] No file R-lang.cps. Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 330812 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/<>/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/<>/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (69 pages, 380202 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/<>/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/<>/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (69 pages, 380195 bytes). Transcript written on R-lang.log. installing R manuals in PDF format ... make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' make prefix=/<>/debian/r-base-core/usr \ infodir=/<>/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi mkdir -p -- /<>/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/<>/debian/r-base-core/usr/share/info" installing R info pages ... updating '/<>/debian/r-base-core/usr/share/info/dir' ... you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html gunzip -9v /<>/debian/r-base-core/usr/share/info/*.gz /<>/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.2% -- replaced with /<>/debian/r-base-core/usr/share/info/R-FAQ.info /<>/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.4% -- replaced with /<>/debian/r-base-core/usr/share/info/R-admin.info /<>/debian/r-base-core/usr/share/info/R-data.info.gz: 70.9% -- replaced with /<>/debian/r-base-core/usr/share/info/R-data.info /<>/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.8% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-1 /<>/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 68.1% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-2 /<>/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 78.5% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-3 /<>/debian/r-base-core/usr/share/info/R-exts.info.gz: 70.2% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info /<>/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.4% -- replaced with /<>/debian/r-base-core/usr/share/info/R-intro.info /<>/debian/r-base-core/usr/share/info/R-ints.info.gz: 68.7% -- replaced with /<>/debian/r-base-core/usr/share/info/R-ints.info /<>/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.9% -- replaced with /<>/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /<>/debian/r-doc-info/usr/share/info/dir \ /<>/debian/r-doc-info/usr/share/info/dir.old removed '/<>/debian/r-doc-info/usr/share/info/dir' touch install-indep-stamp dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /<>/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 5752 -rw-rw-r-- 1 root root 4998580 May 7 12:30 libRmath.a -rwxrwxr-x 1 root root 883104 May 7 12:30 libRmath.so drwxr-xr-x 2 root root 4096 May 7 13:02 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /<>/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /<>/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /<>/debian/r-base-core/etc/R (cd /<>/debian/r-base-core/usr/lib/R/etc; \ cat /<>/debian/Renviron-R_LIBS.patch | patch --dry-run; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) checking file Renviron Hunk #1 succeeded at 51 with fuzz 2 (offset 18 lines). dh_bash-completion # edd 12 Jan 2016 new location #install -m 0644 debian/R.bash-completion \ # debian/r-base-core/usr/share/bash-completion/completions/R (cd /<>/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/Rlogo.svg \ debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installexamples -pr-mathlib src/nmath/standalone/test.c #dh_installmenu -a # (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /<>/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /<>/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /<>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip -a 2309b4f1fb9c2b69f70fcf10d3471b0a406bc5c7 a1255d45d9c3f1e6badfd3307609cb213fc1d4cc a1255d45d9c3f1e6badfd3307609cb213fc1d4cc 41c8f60f5206021f5e06521cc78a221eb262d219 df4382e4d1bb7ff3e95984edfc9b95f4f82694fb 760db37e659c0f448b47ce9674f2257861cc3004 d5d9bae4868e957896032c0a0a6ef302812e596d f304a4f1792adba87645a04fe2325ac3e6ca26b2 d95821935f3632b2360771b355c3348aa50f7779 66a6ad9b09563a20a7dce0e417e73022103f59d7 74d5745456543ecb00ea24413eb78f99d61093b2 2937e73e110bdabebf7897aa21f17ebaba366210 5bc5dc4b0252925f750702017201df2868ec6491 6db54899ade5f9d2656dedd77f5eaf20b7f1c275 0206433094dd1563ae68d45fb008dd4b9c87c6a9 9f6c7392bd246dd25d778b8fa5855d56389e62d5 968f96988a432dc2e772f1bdb21b5c1504cd2e2e eca9ebfbfbc45ffc49f7b8487b8ea6219f071739 9ef53832e17f46b316063ba33e69d8c76bbd60c7 da160b7dddfa955c1fa9c4849c6318748c2cc959 dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /<>/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package r-base-core: substitution variable ${perl:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib .. removing usr/share/doc/r-mathlib/changelog.gz INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core .. removing usr/share/doc/r-base-core/changelog.gz INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-base-core ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring INFO: pkgstripfiles: waiting for lock (r-mathlib) ... ..INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... o INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: PNG optimization (8/0) for package r-base-core took 35 s INFO: pkgstripfiles: waiting for lock (r-mathlib) ... dpkg-deb: building package 'r-base-core' in '../r-base-core_4.2.0-1ubuntu1~ppa1_riscv64.deb'. pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-mathlib ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.2.0-1ubuntu1~ppa1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../r-base_4.2.0-1ubuntu1~ppa1_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-base_4.2.0-1ubuntu1~ppa1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-05-07T13:09:57Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-base_4.2.0-1ubuntu1~ppa1_riscv64.changes: ------------------------------------------- Format: 1.8 Date: Sat, 07 May 2022 09:38:09 +0000 Source: r-base Binary: r-base-core r-mathlib Built-For-Profiles: noudeb Architecture: riscv64 Version: 4.2.0-1ubuntu1~ppa1 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: r-base-core - GNU R core of statistical computation and graphics system r-mathlib - GNU R standalone mathematics library Changes: r-base (4.2.0-1ubuntu1~ppa1) kinetic; urgency=medium . * Merge from Debian unstable, remaining changes: + Turn off LTO as it missbuilds R with 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r-mathlib_4.2.0-1ubuntu1~ppa1_riscv64.deb Original-Maintainer: Dirk Eddelbuettel /<>/r-base_4.2.0-1ubuntu1~ppa1_riscv64.changes.new could not be renamed to /<>/r-base_4.2.0-1ubuntu1~ppa1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-base Binary: r-base-core r-mathlib Architecture: riscv64 Version: 4.2.0-1ubuntu1~ppa1 Checksums-Md5: 05305e9c1f64903c2bbd02513f8edeae 27942346 r-base-core_4.2.0-1ubuntu1~ppa1_riscv64.deb 4a8eef554e89b5f39fb2b2d260a436a5 2350254 r-mathlib_4.2.0-1ubuntu1~ppa1_riscv64.deb Checksums-Sha1: d25be5707262122278c9c3871cb02b5cc7abccde 27942346 r-base-core_4.2.0-1ubuntu1~ppa1_riscv64.deb 1d154f28cb844585bb4a70d57889ebc232b07640 2350254 r-mathlib_4.2.0-1ubuntu1~ppa1_riscv64.deb Checksums-Sha256: 7886817d09ed540dc0e96d216b12aa8aabba5e3701716901089255ac707e6f67 27942346 r-base-core_4.2.0-1ubuntu1~ppa1_riscv64.deb 243eec62d2d41b203d3f2e3aa7fe2c2e853239a86d59d42c0c76132fd72d6191 2350254 r-mathlib_4.2.0-1ubuntu1~ppa1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sat, 07 May 2022 13:09:43 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-4ubuntu4), autotools-dev (= 20220109.1), base-files (= 12ubuntu5), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), bash-completion (= 1:2.11-6ubuntu1), binutils (= 2.38-4ubuntu1), binutils-common (= 2.38-4ubuntu1), binutils-riscv64-linux-gnu (= 2.38-4ubuntu1), bison (= 2:3.8.2+dfsg-1build1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), ca-certificates-java (= 20190909), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-1ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3build1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.5-1ubuntu2), debugedit (= 1:5.0-4build1), default-jdk (= 2:1.11-72build2), default-jdk-headless (= 2:1.11-72build2), default-jre (= 2:1.11-72build2), default-jre-headless (= 2:1.11-72build2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.1ubuntu2), dpkg-dev (= 1.21.1ubuntu2), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig (= 2.13.1-4.2ubuntu5), fontconfig-config (= 2.13.1-4.2ubuntu5), fonts-dejavu-core (= 2.37-2build1), fonts-lmodern (= 2.005-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-1ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-1ubuntu1), gcc-11-base (= 11.3.0-1ubuntu1), gcc-12-base (= 12-20220428-1ubuntu1), gettext (= 0.21-4ubuntu4), gettext-base (= 0.21-4ubuntu4), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.3.0-1ubuntu1), gir1.2-freedesktop (= 1.72.0-1), gir1.2-glib-2.0 (= 1.72.0-1), gir1.2-harfbuzz-0.0 (= 2.7.4-1ubuntu4), gir1.2-pango-1.0 (= 1.50.7+ds-1), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-2), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), java-common (= 0.72build2), libacl1 (= 2.3.1-1), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-1ubuntu1), libasound2 (= 1.2.6.1-1ubuntu1), libasound2-data (= 1.2.6.1-1ubuntu1), libatomic1 (= 12-20220428-1ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libavahi-client3 (= 0.8-5ubuntu5), libavahi-common-data (= 0.8-5ubuntu5), libavahi-common3 (= 0.8-5ubuntu5), libbinutils (= 2.38-4ubuntu1), libblas-dev (= 3.10.0-2ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid-dev (= 2.38-4ubuntu1), libblkid1 (= 2.38-4ubuntu1), libbrotli-dev (= 1.0.9-2build6), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo-gobject2 (= 1.16.0-5ubuntu2), libcairo-script-interpreter2 (= 1.16.0-5ubuntu2), libcairo2 (= 1.16.0-5ubuntu2), libcairo2-dev (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12-20220428-1ubuntu1), libcom-err2 (= 1.46.5-2ubuntu1), libcommons-logging-java (= 1.2-3), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-4ubuntu1), libctf0 (= 2.38-4ubuntu1), libcups2 (= 2.4.1op1-1ubuntu4), libcurl4 (= 7.83.0-1), libcurl4-openssl-dev (= 7.83.0-1), libdatrie-dev (= 0.2.13-2), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu3), libdbus-1-3 (= 1.12.20-2ubuntu4), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdeflate-dev (= 1.10-2), libdeflate0 (= 1.10-2), libdpkg-perl (= 1.21.1ubuntu2), libdrm-common (= 2.4.110-1ubuntu1), libdrm-nouveau2 (= 2.4.110-1ubuntu1), libdrm-radeon1 (= 2.4.110-1ubuntu1), libdrm2 (= 2.4.110-1ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libexpat1-dev (= 2.4.8-1), libffi-dev (= 3.4.2-4), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontbox-java (= 1:1.8.16-2), libfontconfig-dev (= 2.13.1-4.2ubuntu5), libfontconfig1 (= 2.13.1-4.2ubuntu5), libfontconfig1-dev (= 2.13.1-4.2ubuntu5), libfontenc1 (= 1:1.1.4-1build3), libfreetype-dev (= 2.11.1+dfsg-2), libfreetype6 (= 2.11.1+dfsg-2), libfreetype6-dev (= 2.11.1+dfsg-2), libfribidi-dev (= 1.0.8-2ubuntu3.1), libfribidi0 (= 1.0.8-2ubuntu3.1), libgcc-11-dev (= 11.3.0-1ubuntu1), libgcc-s1 (= 12-20220428-1ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu3), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran-11-dev (= 11.3.0-1ubuntu1), libgfortran5 (= 12-20220428-1ubuntu1), libgif7 (= 5.2.1-2.4), libgirepository-1.0-1 (= 1.72.0-1), libgl1 (= 1.4.0-1), libgl1-mesa-dri (= 22.0.1-1ubuntu2), libglapi-mesa (= 22.0.1-1ubuntu2), libglib2.0-0 (= 2.72.1-1), libglib2.0-bin (= 2.72.1-1), libglib2.0-data (= 2.72.1-1), libglib2.0-dev (= 2.72.1-1), libglib2.0-dev-bin (= 2.72.1-1), libglvnd0 (= 1.4.0-1), libglx-mesa0 (= 22.0.1-1ubuntu2), libglx0 (= 1.4.0-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.4-2ubuntu1), libgomp1 (= 12-20220428-1ubuntu1), libgpg-error0 (= 1.45-2), libgraphite2-3 (= 1.3.14-1build2), libgraphite2-dev (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.19.2-2), libharfbuzz-dev (= 2.7.4-1ubuntu4), libharfbuzz-gobject0 (= 2.7.4-1ubuntu4), libharfbuzz-icu0 (= 2.7.4-1ubuntu4), libharfbuzz0b (= 2.7.4-1ubuntu4), libhogweed6 (= 3.7.3-1build2), libice-dev (= 2:1.0.10-1build2), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-2), libicu71 (= 71.1-2), libidn2-0 (= 2.3.2-2build1), libisl23 (= 0.24-2build1), libjbig-dev (= 2.1-3.1build3), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkpathsea6 (= 2021.20210626.59705-1build2), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack-dev (= 3.10.0-2ubuntu1), liblapack3 (= 3.10.0-2ubuntu1), liblcms2-2 (= 2.12~rc1-2build2), libldap-2.5-0 (= 2.5.11+dfsg-1~exp1ubuntu3), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2ubuntu1), liblzma5 (= 5.2.5-2ubuntu1), liblzo2-2 (= 2.10-2build3), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-1build1), libmime-charset-perl (= 1.012.2-1), libmount-dev (= 2.38-4ubuntu1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncurses-dev (= 6.3+20220423-2), libncurses5-dev (= 6.3+20220423-2), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libnspr4 (= 2:4.33-1), libnss3 (= 2:3.68.2-0ubuntu1), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpango-1.0-0 (= 1.50.7+ds-1), libpango1.0-dev (= 1.50.7+ds-1), libpangocairo-1.0-0 (= 1.50.7+ds-1), libpangoft2-1.0-0 (= 1.50.7+ds-1), libpangoxft-1.0-0 (= 1.50.7+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libpcre16-3 (= 2:8.39-14), libpcre2-16-0 (= 10.40-1), libpcre2-32-0 (= 10.40-1), libpcre2-8-0 (= 10.40-1), libpcre2-dev (= 10.40-1), libpcre2-posix3 (= 10.40-1), libpcre3 (= 2:8.39-14), libpcre3-dev (= 2:8.39-14), libpcre32-3 (= 2:8.39-14), libpcrecpp0v5 (= 2:8.39-14), libpcsclite1 (= 1.9.5-3), libpdfbox-java (= 1:1.8.16-2), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1build4), libpixman-1-dev (= 0.40.0-1build4), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libpsl5 (= 0.21.0-1.2build2), libptexenc1 (= 2021.20210626.59705-1build2), libpthread-stubs0-dev (= 0.4-1build2), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10-minimal (= 3.10.4-3), libpython3.10-stdlib (= 3.10.4-3), libreadline-dev (= 8.1.2-1.2), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.27+dfsg2-3ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg2-3ubuntu1), libselinux1 (= 3.3-1build2), libselinux1-dev (= 3.3-1build2), libsensors-config (= 1:3.6.0-7ubuntu1), libsensors5 (= 1:3.6.0-7ubuntu1), libsepol-dev (= 3.3-1build1), libsepol2 (= 3.3-1build1), libsigsegv2 (= 2.13-1ubuntu3), libsm-dev (= 2:1.2.3-1build2), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libsombok3 (= 2.4.0-2), libsqlite3-0 (= 3.38.3-1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.3-0ubuntu1), libstdc++-11-dev (= 11.3.0-1ubuntu1), libstdc++6 (= 12-20220428-1ubuntu1), libsub-override-perl (= 0.09-2), libsynctex2 (= 2021.20210626.59705-1build2), libsystemd0 (= 249.11-0ubuntu3.1), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libteckit0 (= 2.5.11+ds1-1), libtexlua53 (= 2021.20210626.59705-1build2), libtext-unidecode-perl (= 1.30-1), libthai-data (= 0.1.29-1build1), libthai-dev (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff-dev (= 4.3.0-7), libtiff5 (= 4.3.0-7), libtiff5-dev (= 4.3.0-7), libtiffxx5 (= 4.3.0-7), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu3.1), libunicode-linebreak-perl (= 0.0.20190101-1build3), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libvulkan1 (= 1.3.204.1-2), libwebp7 (= 1.2.2-2), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libx11-dev (= 2:1.7.5-1), libx11-xcb1 (= 2:1.7.5-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxaw7 (= 2:1.0.14-1), libxcb-dri2-0 (= 1.14-3ubuntu3), libxcb-dri3-0 (= 1.14-3ubuntu3), libxcb-glx0 (= 1.14-3ubuntu3), libxcb-present0 (= 1.14-3ubuntu3), libxcb-render0 (= 1.14-3ubuntu3), libxcb-render0-dev (= 1.14-3ubuntu3), libxcb-shm0 (= 1.14-3ubuntu3), libxcb-shm0-dev (= 1.14-3ubuntu3), libxcb-sync1 (= 1.14-3ubuntu3), libxcb-xfixes0 (= 1.14-3ubuntu3), libxcb1 (= 1.14-3ubuntu3), libxcb1-dev (= 1.14-3ubuntu3), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext-dev (= 2:1.3.4-1build1), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-1), libxfont2 (= 1:2.0.5-1build1), libxft-dev (= 2.3.4-1), libxft2 (= 2.3.4-1), libxi6 (= 2:1.8-1build1), libxkbfile1 (= 1:1.1.0-1build3), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-1), libxml-namespacesupport-perl (= 1.12-1.1), libxml-sax-base-perl (= 1.09-1.1), libxml-sax-perl (= 1.02+dfsg-3), libxml2 (= 2.9.14+dfsg-1), libxmu6 (= 2:1.1.3-3), libxmuu1 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1build2), libxrandr2 (= 2:1.5.2-2), libxrender-dev (= 1:0.9.10-1build4), libxrender1 (= 1:0.9.10-1build4), libxshmfence1 (= 1.3-1build4), libxss-dev (= 1:1.2.3-1build2), libxss1 (= 1:1.2.3-1build2), libxt-dev (= 1:1.2.1-1), libxt6 (= 1:1.2.1-1), libxtst6 (= 2:1.2.3-1build4), libxxf86vm1 (= 1:1.1.4-1build3), libzstd1 (= 1.5.2+dfsg-1), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.15.0-28.29), lmodern (= 2.005-1), login (= 1:4.8.1-2ubuntu2), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 25), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3), media-types (= 7.1.0), mpack (= 1.6-18), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), openjdk-11-jdk (= 11.0.15+10-0ubuntu0.22.04.1), openjdk-11-jdk-headless (= 11.0.15+10-0ubuntu0.22.04.1), openjdk-11-jre (= 11.0.15+10-0ubuntu0.22.04.1), openjdk-11-jre-headless (= 11.0.15+10-0ubuntu0.22.04.1), openssl (= 3.0.3-0ubuntu1), pango1.0-tools (= 1.50.7+ds-1), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 12.2-1ubuntu1), python3 (= 3.10.4-0ubuntu2), python3-distutils (= 3.10.4-0ubuntu1), python3-lib2to3 (= 3.10.4-0ubuntu1), python3-minimal (= 3.10.4-0ubuntu2), python3.10 (= 3.10.4-3), python3.10-minimal (= 3.10.4-3), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), t1utils (= 1.41-4build2), tar (= 1.34+dfsg-1build3), tcl8.6 (= 8.6.12+dfsg-1build1), tcl8.6-dev (= 8.6.12+dfsg-1build1), tex-common (= 6.17), texinfo (= 6.8-4build1), texlive-base (= 2021.20220204-1), texlive-binaries (= 2021.20210626.59705-1build2), texlive-extra-utils (= 2021.20220204-1), texlive-fonts-extra (= 2021.20220204-1), texlive-fonts-recommended (= 2021.20220204-1), texlive-latex-base (= 2021.20220204-1), texlive-latex-extra (= 2021.20220204-1), texlive-latex-recommended (= 2021.20220204-1), texlive-luatex (= 2021.20220204-1), texlive-pictures (= 2021.20220204-1), texlive-plain-generic (= 2021.20220204-1), tk8.6 (= 8.6.12-1build1), tk8.6-dev (= 8.6.12-1build1), tzdata (= 2022a-0ubuntu1), ucf (= 3.0043), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), uuid-dev (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), x11-xkb-utils (= 7.7+7), x11proto-core-dev (= 2022.1-1), x11proto-dev (= 2022.1-1), xauth (= 1:1.1.1-1), xdg-utils (= 1.1.3-4.1ubuntu2), xfonts-base (= 1:1.0.5), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xkb-data (= 2.35.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xserver-common (= 2:21.1.3-2ubuntu2), xtrans-dev (= 1.4.0-1), xvfb (= 2:21.1.3-2ubuntu2), xz-utils (= 5.2.5-2ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1651916289" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-base-core_4.2.0-1ubuntu1~ppa1_riscv64.deb ------------------------------------------- new Debian package, version 2.0. size 27942346 bytes: control archive=27066 bytes. 93 bytes, 5 lines conffiles 3609 bytes, 46 lines control 82504 bytes, 1025 lines md5sums 2772 bytes, 75 lines * postinst #!/bin/sh 214 bytes, 5 lines * postrm #!/bin/sh 864 bytes, 37 lines * preinst #!/bin/sh 886 bytes, 29 lines * prerm #!/bin/sh Package: r-base-core Source: r-base Version: 4.2.0-1ubuntu1~ppa1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 42683 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.34), libcairo2 (>= 1.6.0), libcurl4 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libicu71 (>= 71.1-1~), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.18.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre2-8-0 (>= 10.22), libpng16-16 (>= 1.6.2-1), libreadline8 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtirpc3 (>= 1.0.2), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates Recommends: r-recommended, r-base-dev, r-doc-html Suggests: elpa-ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Conflicts: r-base-latex, r-cran-rcompgen, r-gnome Breaks: r-bioc-graph (<< 1.62.0-1~), r-cran-bbmle (<< 1.0.20-5~), r-cran-biocmanager (<< 1.30.4+dfsg-2~), r-cran-caret (<< 6.0-84-2~), r-cran-cmprsk (<< 2.2-8-1~), r-cran-coin (<< 1.3-0-1~), r-cran-dendextend (<< 1.12.0+dfsg-1~), r-cran-fields (<< 9.8-3-1~), r-cran-filehash (<< 2.4-2-2~), r-cran-future (<< 1.14.0+dfsg-1~), r-cran-genetics (<< 1.3.8.1.2-1~), r-cran-haplo.stats (<< 1.7.9-4~), r-cran-igraph (<< 1.2.4.1-1~), r-cran-lava (<< 1.6.5-1~), r-cran-libcoin (<< 1.0-4-1~), r-cran-msm (<< 1.6.7-1~), r-cran-permute (<< 0.9-5-1~), r-cran-phangorn (<< 2.5.5-1~), r-cran-popepi (<< 0.4.7-1~), r-cran-recipes (<< 0.1.6-1~), r-cran-sp (<< 1:1.3-1-2~), r-cran-spam (<< 2.2-2-1~), r-cran-units (<< 0.6-3-1~), r-cran-vegan (<< 2.5-5+dfsg-1~), r-cran-zelig (<< 5.1.6.1-1~) Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0) Provides: r-api-4.0, r-base-latex, r-cran-rcompgen, r-gnome Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the core GNU R system from which only the optional documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info have been split off to somewhat reduce the size of this package. Original-Maintainer: Dirk Eddelbuettel drwxr-xr-x root/root 0 2022-05-07 09:38 ./ drwxr-xr-x root/root 0 2022-05-07 09:38 ./etc/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./etc/R/ -rw-r--r-- root/root 8590 2022-05-07 09:38 ./etc/R/Makeconf -rw-r--r-- root/root 1984 2022-05-07 09:38 ./etc/R/Renviron.site -rw-r--r-- root/root 988 2022-05-07 09:38 ./etc/R/Rprofile.site -rw-r--r-- root/root 785 2022-05-07 09:38 ./etc/R/ldpaths -rw-r--r-- root/root 1098 2022-05-07 09:38 ./etc/R/repositories drwxr-xr-x root/root 0 2022-05-07 09:38 ./etc/ld.so.conf.d/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/bin/ -rwxr-xr-x root/root 8960 2022-05-07 09:38 ./usr/bin/R -rwxr-xr-x root/root 10456 2022-05-07 09:38 ./usr/bin/Rscript drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/lib/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/lib/R/ lrwxrwxrwx root/root 0 2022-05-07 09:38 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2 -rw-r--r-- root/root 46 2022-05-07 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2022-05-07 09:38 ./usr/share/texmf/tex/latex/ lrwxrwxrwx root/root 0 2022-05-07 09:38 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf r-mathlib_4.2.0-1ubuntu1~ppa1_riscv64.deb ----------------------------------------- new Debian package, version 2.0. size 2350254 bytes: control archive=2098 bytes. 1877 bytes, 40 lines control 1431 bytes, 21 lines md5sums 369 bytes, 27 lines * postinst #!/bin/sh 21 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: r-mathlib Source: r-base Version: 4.2.0-1ubuntu1~ppa1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 4045 Depends: libc6 (>= 2.27) Recommends: r-base-core (= 4.2.0-1ubuntu1~ppa1), r-base-dev (= 4.2.0-1ubuntu1~ppa1) Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R standalone mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. Original-Maintainer: Dirk Eddelbuettel drwxr-xr-x root/root 0 2022-05-07 09:38 ./ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/include/ -rw-r--r-- root/root 17561 2022-05-07 09:38 ./usr/include/Rmath.h drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/lib/ -rw-r--r-- root/root 1803660 2022-05-07 09:38 ./usr/lib/libRmath.a lrwxrwxrwx root/root 0 2022-05-07 09:38 ./usr/lib/libRmath.so -> libRmath.so.1 lrwxrwxrwx root/root 0 2022-05-07 09:38 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0 -rw-r--r-- root/root 149632 2022-05-07 09:38 ./usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 173 2022-05-07 09:38 ./usr/lib/pkgconfig/libRmath.pc drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/share/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/share/doc/r-mathlib/ -rw-r--r-- root/root 35933 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.0.gz -rw-r--r-- root/root 108753 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.1.gz -rw-r--r-- root/root 96630 2020-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz -rw-r--r-- root/root 229638 2022-03-24 23:02 ./usr/share/doc/r-mathlib/NEWS.2.gz -rw-r--r-- root/root 397694 2022-05-07 09:38 ./usr/share/doc/r-mathlib/NEWS.2.rds.gz -rw-r--r-- root/root 122261 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.Rd.gz -rw-r--r-- root/root 113067 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.gz -rw-r--r-- root/root 516500 2022-05-07 09:38 ./usr/share/doc/r-mathlib/NEWS.3.rds.gz -rw-r--r-- root/root 41503 2022-04-21 13:19 ./usr/share/doc/r-mathlib/NEWS.Rd.gz lrwxrwxrwx root/root 0 2022-05-07 09:38 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz -rw-r--r-- root/root 204345 2022-05-07 09:38 ./usr/share/doc/r-mathlib/NEWS.pdf.gz -rw-r--r-- root/root 170154 2022-05-07 09:38 ./usr/share/doc/r-mathlib/NEWS.rds.gz -rw-r--r-- root/root 2107 2018-09-25 08:47 ./usr/share/doc/r-mathlib/README.gz -rw-r--r-- root/root 3026 2022-03-25 00:27 ./usr/share/doc/r-mathlib/README.mathlib -rw-r--r-- root/root 797 2022-05-07 09:38 ./usr/share/doc/r-mathlib/changelog.Debian.gz -rw-r--r-- root/root 20761 2022-03-25 00:27 ./usr/share/doc/r-mathlib/copyright drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/share/doc/r-mathlib/examples/ -rw-r--r-- root/root 1371 2018-09-25 08:46 ./usr/share/doc/r-mathlib/examples/test.c drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-05-07 09:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 364 2022-03-25 00:27 ./usr/share/lintian/overrides/r-mathlib +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 479584 Build-Time: 9507 Distribution: kinetic Host Architecture: riscv64 Install-Time: 2475 Job: r-base_4.2.0-1ubuntu1~ppa1.dsc Machine Architecture: riscv64 Package: r-base Package-Time: 12036 Source-Version: 4.2.0-1ubuntu1~ppa1 Space: 479584 Status: successful Version: 4.2.0-1ubuntu1~ppa1 -------------------------------------------------------------------------------- Finished at 2022-05-07T13:09:57Z Build needed 03:20:36, 479584k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 Scanning for processes to kill in build PACKAGEBUILD-23722095 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 Stopping target for build PACKAGEBUILD-23722095 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23722095 Removing build PACKAGEBUILD-23722095