RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-46 3.13.0-86-generic #131-Ubuntu SMP Thu May 12 23:33:13 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.6 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.24. Syncing the system clock with the buildd NTP service... 27 May 16:04:57 ntpdate[1675]: adjust time server 10.211.37.1 offset -0.045538 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9819445', '/home/buildd/filecache-default/8204889cda79fca0b488b979ea0c52fb9d6dbd17'] Unpacking chroot for build PACKAGEBUILD-9819445 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9819445'] Mounting chroot for build PACKAGEBUILD-9819445 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9819445', 'deb http://ppa.launchpad.net/gt1/libmaus2/ubuntu wily main', 'deb http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu wily main', 'deb http://ftpmaster.internal/ubuntu wily main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-9819445 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9819445', 'amd64'] Updating debian chroot for build PACKAGEBUILD-9819445 Get:1 http://ppa.launchpad.net wily InRelease [15.4 kB] Hit http://ftpmaster.internal wily InRelease Get:2 http://ppa.launchpad.net wily InRelease [15.5 kB] Get:3 http://ftpmaster.internal wily-security InRelease [65.9 kB] Get:4 http://ftpmaster.internal wily-updates InRelease [65.9 kB] Ign http://ppa.launchpad.net wily InRelease Get:5 http://ppa.launchpad.net wily/main amd64 Packages [897 B] Hit http://ftpmaster.internal wily/main amd64 Packages Ign http://ppa.launchpad.net wily InRelease Get:6 http://ppa.launchpad.net wily/main Translation-en [626 B] Hit http://ftpmaster.internal wily/restricted amd64 Packages Get:7 http://ppa.launchpad.net wily/main amd64 Packages [889 B] Hit http://ftpmaster.internal wily/universe amd64 Packages Get:8 http://ppa.launchpad.net wily/main Translation-en [244 B] Hit http://ftpmaster.internal wily/multiverse amd64 Packages Hit http://ftpmaster.internal wily/main Translation-en Hit http://ftpmaster.internal wily/multiverse Translation-en Hit http://ftpmaster.internal wily/restricted Translation-en Hit http://ftpmaster.internal wily/universe Translation-en Get:9 http://ftpmaster.internal wily-security/main amd64 Packages [155 kB] Get:10 http://ftpmaster.internal wily-security/restricted amd64 Packages [10.9 kB] Get:11 http://ftpmaster.internal wily-security/universe amd64 Packages [53.5 kB] Get:12 http://ftpmaster.internal wily-security/multiverse amd64 Packages [6256 B] Get:13 http://ftpmaster.internal wily-security/main Translation-en [75.7 kB] Get:14 http://ftpmaster.internal wily-security/multiverse Translation-en [2806 B] Get:15 http://ftpmaster.internal wily-security/restricted Translation-en [2666 B] Get:16 http://ftpmaster.internal wily-security/universe Translation-en [34.6 kB] Get:17 http://ftpmaster.internal wily-updates/main amd64 Packages [221 kB] Get:18 http://ftpmaster.internal wily-updates/restricted amd64 Packages [13.3 kB] Get:19 http://ftpmaster.internal wily-updates/universe amd64 Packages [99.0 kB] Get:20 http://ftpmaster.internal wily-updates/multiverse amd64 Packages [6256 B] Get:21 http://ftpmaster.internal wily-updates/main Translation-en [102 kB] Get:22 http://ftpmaster.internal wily-updates/multiverse Translation-en [3156 B] Get:23 http://ftpmaster.internal wily-updates/restricted Translation-en [3024 B] Get:24 http://ftpmaster.internal wily-updates/universe Translation-en [56.2 kB] Fetched 1010 kB in 2s (371 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net wily InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 8B5BFAEB65778D86 W: GPG error: http://ppa.launchpad.net wily InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 8B5BFAEB65778D86 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils ca-certificates dpkg dpkg-dev init initscripts libapt-pkg4.16 libc-bin libc-dev-bin libc6 libc6-dev libcurl3-gnutls libdpkg-perl libgcrypt20 libgssapi-krb5-2 libhogweed4 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libnettle6 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libpng12-0 libssl1.0.0 libsystemd0 libtasn1-6 libudev1 linux-libc-dev multiarch-support openssl optipng perl perl-base perl-modules systemd systemd-sysv sysv-rc sysvinit-utils tzdata udev 46 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After this operation, 1134 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily-security/main dpkg amd64 1.18.2ubuntu5.1 [2086 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily-updates/main init amd64 1.23ubuntu4 [3968 B] Get:3 http://ftpmaster.internal/ubuntu/ wily-security/main perl amd64 5.20.2-6ubuntu0.2 [2635 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily-security/main perl-base amd64 5.20.2-6ubuntu0.2 [1204 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily-security/main perl-modules all 5.20.2-6ubuntu0.2 [2482 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily-security/main libc6-dev amd64 2.21-0ubuntu4.3 [1958 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily-security/main libc-dev-bin amd64 2.21-0ubuntu4.3 [68.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily-security/main linux-libc-dev amd64 4.2.0-36.42 [823 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily-security/main libc-bin amd64 2.21-0ubuntu4.3 [1169 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily-security/main libc6 amd64 2.21-0ubuntu4.3 [4766 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily-security/main libapt-pkg4.16 amd64 1.0.10.2ubuntu2 [636 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily-security/main apt amd64 1.0.10.2ubuntu2 [987 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily-security/main libpam0g amd64 1.1.8-3.1ubuntu3.2 [55.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily-security/main libpam-modules-bin amd64 1.1.8-3.1ubuntu3.2 [37.1 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily-security/main libpam-modules amd64 1.1.8-3.1ubuntu3.2 [244 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily-updates/main libpcre3 amd64 2:8.35-7.1ubuntu1.4 [222 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily-updates/main libudev1 amd64 225-1ubuntu9.1 [54.7 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily-updates/main udev amd64 225-1ubuntu9.1 [970 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily-updates/main sysvinit-utils amd64 2.88dsf-59.2ubuntu2.1 [25.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily-updates/main sysv-rc all 2.88dsf-59.2ubuntu2.1 [36.1 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily-updates/main libsystemd0 amd64 225-1ubuntu9.1 [200 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily-updates/main systemd amd64 225-1ubuntu9.1 [3331 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily-updates/main systemd-sysv amd64 225-1ubuntu9.1 [13.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily-updates/main libldap-2.4-2 amd64 2.4.41+dfsg-1ubuntu2.1 [161 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily-updates/main initscripts amd64 2.88dsf-59.2ubuntu2.1 [24.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily-security/main libgcrypt20 amd64 1.6.3-2ubuntu1.1 [336 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily-security/main libpam-runtime all 1.1.8-3.1ubuntu3.2 [37.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily-security/main multiarch-support amd64 2.21-0ubuntu4.3 [7184 B] Get:29 http://ftpmaster.internal/ubuntu/ wily-security/main tzdata all 2016d-0ubuntu0.15.10 [166 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily-updates/main binutils amd64 2.25.1-6ubuntu2 [2281 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily-security/main libdpkg-perl all 1.18.2ubuntu5.1 [194 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily-security/main dpkg-dev all 1.18.2ubuntu5.1 [583 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily-security/main libhogweed4 amd64 3.1.1-4ubuntu0.1 [135 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily-security/main libnettle6 amd64 3.1.1-4ubuntu0.1 [93.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily-security/main libssl1.0.0 amd64 1.0.2d-0ubuntu1.5 [1080 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily-security/main libtasn1-6 amd64 4.5-2ubuntu0.1 [42.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily-security/main libgssapi-krb5-2 amd64 1.13.2+dfsg-2ubuntu0.1 [120 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily-security/main libkrb5-3 amd64 1.13.2+dfsg-2ubuntu0.1 [274 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily-security/main libkrb5support0 amd64 1.13.2+dfsg-2ubuntu0.1 [30.7 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily-security/main libk5crypto3 amd64 1.13.2+dfsg-2ubuntu0.1 [81.3 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily-security/main libcurl3-gnutls amd64 7.43.0-1ubuntu2.1 [183 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily-security/main apt-transport-https amd64 1.0.10.2ubuntu2 [25.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily-security/main openssl amd64 1.0.2d-0ubuntu1.5 [511 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily-security/main ca-certificates all 20160104ubuntu0.15.10.1 [191 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily-security/main libpng12-0 amd64 1.2.51-0ubuntu3.15.10.2 [119 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily-security/main optipng amd64 0.7.5-1ubuntu0.1 [81.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.8 MB in 1s (21.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11690 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.2ubuntu5.1_amd64.deb ... Unpacking dpkg (1.18.2ubuntu5.1) over (1.18.2ubuntu5) ... Setting up dpkg (1.18.2ubuntu5.1) ... (Reading database ... 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Unpacking libc6:amd64 (2.21-0ubuntu4.3) over (2.21-0ubuntu4) ... Setting up libc6:amd64 (2.21-0ubuntu4.3) ... Processing triggers for libc-bin (2.21-0ubuntu4.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11689 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.16_1.0.10.2ubuntu2_amd64.deb ... Unpacking libapt-pkg4.16:amd64 (1.0.10.2ubuntu2) over (1.0.10.2ubuntu1) ... Setting up libapt-pkg4.16:amd64 (1.0.10.2ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11689 files and directories currently installed.) Preparing to unpack .../apt_1.0.10.2ubuntu2_amd64.deb ... Unpacking apt (1.0.10.2ubuntu2) over (1.0.10.2ubuntu1) ... Setting up apt (1.0.10.2ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4.3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11689 files and directories currently installed.) Preparing to unpack .../udev_225-1ubuntu9.1_amd64.deb ... Unpacking udev (225-1ubuntu9.1) over (225-1ubuntu9) ... Setting up udev (225-1ubuntu9.1) ... addgroup: The group `input' already exists as a system group. Exiting. A chroot environment has been detected, udev not started. Processing triggers for systemd (225-1ubuntu9) ... (Reading database ... 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Setting up initscripts (2.88dsf-59.2ubuntu2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11689 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2ubuntu1.1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2ubuntu1.1) over (1.6.3-2ubuntu1) ... Setting up libgcrypt20:amd64 (1.6.3-2ubuntu1.1) ... Processing triggers for libc-bin (2.21-0ubuntu4.3) ... (Reading database ... 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Preparing to unpack .../libhogweed4_3.1.1-4ubuntu0.1_amd64.deb ... Unpacking libhogweed4:amd64 (3.1.1-4ubuntu0.1) over (3.1.1-4) ... Preparing to unpack .../libnettle6_3.1.1-4ubuntu0.1_amd64.deb ... Unpacking libnettle6:amd64 (3.1.1-4ubuntu0.1) over (3.1.1-4) ... Preparing to unpack .../libssl1.0.0_1.0.2d-0ubuntu1.5_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.2d-0ubuntu1.5) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../libtasn1-6_4.5-2ubuntu0.1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.5-2ubuntu0.1) over (4.5-2) ... Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-2ubuntu0.1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.13.2+dfsg-2ubuntu0.1) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkrb5-3_1.13.2+dfsg-2ubuntu0.1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.13.2+dfsg-2ubuntu0.1) over (1.13.2+dfsg-2) ... Preparing to unpack .../libkrb5support0_1.13.2+dfsg-2ubuntu0.1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.13.2+dfsg-2ubuntu0.1) over (1.13.2+dfsg-2) ... 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Unpacking optipng (0.7.5-1ubuntu0.1) over (0.7.5-1) ... Setting up perl-modules (5.20.2-6ubuntu0.2) ... Setting up perl (5.20.2-6ubuntu0.2) ... Setting up libc-dev-bin (2.21-0ubuntu4.3) ... Setting up linux-libc-dev:amd64 (4.2.0-36.42) ... Setting up libc6-dev:amd64 (2.21-0ubuntu4.3) ... Setting up libldap-2.4-2:amd64 (2.4.41+dfsg-1ubuntu2.1) ... Setting up binutils (2.25.1-6ubuntu2) ... Setting up libdpkg-perl (1.18.2ubuntu5.1) ... Setting up dpkg-dev (1.18.2ubuntu5.1) ... Setting up libnettle6:amd64 (3.1.1-4ubuntu0.1) ... Setting up libhogweed4:amd64 (3.1.1-4ubuntu0.1) ... Setting up libssl1.0.0:amd64 (1.0.2d-0ubuntu1.5) ... Setting up libtasn1-6:amd64 (4.5-2ubuntu0.1) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-2ubuntu0.1) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-2ubuntu0.1) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-2ubuntu0.1) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-2ubuntu0.1) ... Setting up libcurl3-gnutls:amd64 (7.43.0-1ubuntu2.1) ... Setting up apt-transport-https (1.0.10.2ubuntu2) ... Setting up openssl (1.0.2d-0ubuntu1.5) ... Setting up ca-certificates (20160104ubuntu0.15.10.1) ... Setting up libpng12-0:amd64 (1.2.51-0ubuntu3.15.10.2) ... Setting up optipng (0.7.5-1ubuntu0.1) ... Processing triggers for libc-bin (2.21-0ubuntu4.3) ... Processing triggers for ca-certificates (20160104ubuntu0.15.10.1) ... Updating certificates in /etc/ssl/certs... 6 added, 20 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9819445', 'amd64', 'wily', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=wily', '--purge=never', '--nolog', '-A', 'libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1.dsc'] Initiating build PACKAGEBUILD-9819445 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-86-generic #131-Ubuntu SMP Thu May 12 23:33:13 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-46.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ libmaus2 2.0.195-1+342+201605271602~ubuntu15.10.1 (amd64) 27 May 2016 16:05 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: libmaus2 Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 Source Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 Distribution: wily Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/libmaus2-_T4OBz/libmaus2-2.0.195' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/libmaus2-_T4OBz' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9819445/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-wz52WW/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign copy: ./ InRelease Ign copy: ./ Release.gpg Get:1 copy: ./ Release [2119 B] Get:2 copy: ./ Sources [208 B] Get:3 copy: ./ Packages [525 B] Ign copy: ./ Translation-en Fetched 2852 B in 0s (254 kB/s) Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 774 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-wz52WW/apt_archive/ ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 774 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11688 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, dh-exec, autoconf (>= 2.61), automake (>= 1.10), libtool (>= 2.2.6), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3), libsnappy-dev (>= 1.0.3), seqan-dev (>= 1.2), staden-io-lib-trunk-dev (>= 1.13.0), libgnutls-dev (>= 2.12.14), yasm (>= 1.1.0), nettle-dev (>= 2.4), liblzma-dev (>= 5.1.0) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, dh-exec, autoconf (>= 2.61), automake (>= 1.10), libtool (>= 2.2.6), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3), libsnappy-dev (>= 1.0.3), seqan-dev (>= 1.2), staden-io-lib-trunk-dev (>= 1.13.0), libgnutls-dev (>= 2.12.14), yasm (>= 1.1.0), nettle-dev (>= 2.4), liblzma-dev (>= 5.1.0) dpkg-deb: building package 'sbuild-build-depends-libmaus2-dummy' in '/«BUILDDIR»/resolver-JGXRL2/apt_archive/sbuild-build-depends-libmaus2-dummy.deb'. Ign copy: ./ InRelease Ign copy: ./ Release.gpg Get:1 copy: ./ Release [2119 B] Get:2 copy: ./ Sources [547 B] Get:3 copy: ./ Packages [812 B] Ign copy: ./ Translation-en Fetched 3478 B in 0s (188 kB/s) Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install libmaus2 build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec file gettext gettext-base groff-base intltool-debian libasprintf0v5 libcroco3 libcurl3 libcurl4-openssl-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dev libgnutls-openssl27 libgnutlsxx28 libicu55 liblzma-dev libmagic1 libp11-kit-dev libpipeline1 libsigsegv2 libsnappy-dev libsnappy1v5 libtasn1-6-dev libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf seqan-dev staden-io-lib-trunk staden-io-lib-trunk-dev yasm zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff libcurl4-doc libcurl3-dbg libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssl-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-doc gnutls-bin guile-gnutls liblzma-doc libtool-doc automaken gfortran fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec file gettext gettext-base groff-base intltool-debian libasprintf0v5 libcroco3 libcurl3 libcurl4-openssl-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dev libgnutls-openssl27 libgnutlsxx28 libicu55 liblzma-dev libmagic1 libp11-kit-dev libpipeline1 libsigsegv2 libsnappy-dev libsnappy1v5 libtasn1-6-dev libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf sbuild-build-depends-libmaus2-dummy seqan-dev staden-io-lib-trunk staden-io-lib-trunk-dev yasm zlib1g-dev 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After this operation, 98.9 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! staden-io-lib-trunk staden-io-lib-trunk-dev sbuild-build-depends-libmaus2-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-JGXRL2/apt_archive/ ./ sbuild-build-depends-libmaus2-dummy 0.invalid.0 [1058 B] Get:2 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu/ wily/main staden-io-lib-trunk amd64 1.13.10+532~ubuntu15.10.1 [190 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0v5 amd64 0.19.4-1ubuntu3 [6676 B] Get:4 http://ftpmaster.internal/ubuntu/ wily/main groff-base amd64 1.22.3-1 [1183 kB] Get:5 http://ppa.launchpad.net/gt1/staden-io-lib-trunk-tischler/ubuntu/ wily/main staden-io-lib-trunk-dev amd64 1.13.10+532~ubuntu15.10.1 [265 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 amd64 1.4.1-1 [24.9 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main man-db amd64 2.7.4-1 [858 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily-updates/main libglib2.0-0 amd64 2.46.2-1ubuntu2 [1106 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libicu55 amd64 55.1-4ubuntu1 [7652 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily-security/main libxml2 amd64 2.9.2+zdfsg1-4ubuntu0.3 [692 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 amd64 0.6.8-3 [83.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libsigsegv2 amd64 2.10-4 [14.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 amd64 1:5.22+15-2ubuntu1 [211 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main file amd64 1:5.22+15-2ubuntu1 [20.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libgnutls-openssl27 amd64 3.3.15-5ubuntu2 [20.3 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main gettext-base amd64 0.19.4-1ubuntu3 [48.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main m4 amd64 1.4.17-4 [193 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main autoconf all 2.69-8 [321 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main autotools-dev all 20140911.1 [39.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main automake all 1:1.15-1ubuntu1 [511 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main autopoint all 0.19.4-1ubuntu3 [390 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main gettext amd64 0.19.4-1ubuntu3 [857 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150811ubuntu2 [732 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libtool all 2.4.2-1.11 [180 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main dh-autoreconf all 10 [15.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily-security/main libcurl3 amd64 7.43.0-1ubuntu2.1 [186 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily-security/main libcurl4-openssl-dev amd64 7.43.0-1ubuntu2.1 [261 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libgmpxx4ldbl amd64 2:6.0.0+dfsg-7 [9160 B] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libgmp-dev amd64 2:6.0.0+dfsg-7 [316 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libgnutlsxx28 amd64 3.3.15-5ubuntu2 [14.5 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily-security/main nettle-dev amd64 3.1.1-4ubuntu0.1 [920 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4 [168 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily-security/main libtasn1-6-dev amd64 4.5-2ubuntu0.1 [84.8 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main libp11-kit-dev amd64 0.23.1-3 [58.3 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily/main libgnutls-dev amd64 3.3.15-5ubuntu2 [518 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main pkg-config amd64 0.28-1ubuntu1 [40.0 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main yasm amd64 1.3.0-2 [351 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main dh-exec amd64 0.16 [24.5 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main libsnappy1v5 amd64 1.1.3-2 [16.0 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libsnappy-dev amd64 1.1.3-2 [24.0 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily/universe seqan-dev all 1.4.1+dfsg-2 [2238 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.7 MB in 1s (11.1 MB/s) Selecting previously unselected package libasprintf0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11688 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.4-1ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_amd64.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.4-1_amd64.deb ... Unpacking man-db (2.7.4-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.46.2-1ubuntu2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.46.2-1ubuntu2) ... Selecting previously unselected package libicu55:amd64. Preparing to unpack .../libicu55_55.1-4ubuntu1_amd64.deb ... Unpacking libicu55:amd64 (55.1-4ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu0.3_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+zdfsg1-4ubuntu0.3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-4_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-4) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2ubuntu1_amd64.deb ... Unpacking file (1:5.22+15-2ubuntu1) ... Selecting previously unselected package libgnutls-openssl27:amd64. Preparing to unpack .../libgnutls-openssl27_3.3.15-5ubuntu2_amd64.deb ... Unpacking libgnutls-openssl27:amd64 (3.3.15-5ubuntu2) ... Selecting previously unselected package gettext-base. 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Unpacking libsnappy-dev:amd64 (1.1.3-2) ... Selecting previously unselected package seqan-dev. Preparing to unpack .../seqan-dev_1.4.1+dfsg-2_all.deb ... Unpacking seqan-dev (1.4.1+dfsg-2) ... Selecting previously unselected package sbuild-build-depends-libmaus2-dummy. Preparing to unpack .../sbuild-build-depends-libmaus2-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-libmaus2-dummy (0.invalid.0) ... Setting up libasprintf0v5:amd64 (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.4-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libglib2.0-0:amd64 (2.46.2-1ubuntu2) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-4ubuntu1) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4ubuntu0.3) ... Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up libgnutls-openssl27:amd64 (3.3.15-5ubuntu2) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.4-1ubuntu3) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811ubuntu2) ... Setting up libtool (2.4.2-1.11) ... Setting up dh-autoreconf (10) ... Setting up libcurl3:amd64 (7.43.0-1ubuntu2.1) ... Setting up libcurl4-openssl-dev:amd64 (7.43.0-1ubuntu2.1) ... Setting up libgmpxx4ldbl:amd64 (2:6.0.0+dfsg-7) ... Setting up libgmp-dev:amd64 (2:6.0.0+dfsg-7) ... Setting up libgnutlsxx28:amd64 (3.3.15-5ubuntu2) ... Setting up nettle-dev (3.1.1-4ubuntu0.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... Setting up libtasn1-6-dev:amd64 (4.5-2ubuntu0.1) ... Setting up libp11-kit-dev:amd64 (0.23.1-3) ... Setting up libgnutls-dev:amd64 (3.3.15-5ubuntu2) ... Setting up pkg-config (0.28-1ubuntu1) ... Setting up staden-io-lib-trunk (1.13.10+532~ubuntu15.10.1) ... Setting up staden-io-lib-trunk-dev (1.13.10+532~ubuntu15.10.1) ... Setting up yasm (1.3.0-2) ... Setting up dh-exec (0.16) ... Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... Setting up libsnappy1v5:amd64 (1.1.3-2) ... Setting up libsnappy-dev:amd64 (1.1.3-2) ... Setting up seqan-dev (1.4.1+dfsg-2) ... Setting up sbuild-build-depends-libmaus2-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4.3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-86-generic amd64 (x86_64) Toolchain package versions: binutils_2.25.1-6ubuntu2 dpkg-dev_1.18.2ubuntu5.1 g++-5_5.2.1-22ubuntu2 gcc-5_5.2.1-22ubuntu2 libc6-dev_2.21-0ubuntu4.3 libstdc++-5-dev_5.2.1-22ubuntu2 libstdc++6_5.2.1-22ubuntu2 linux-libc-dev_4.2.0-36.42 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.10.2ubuntu2 apt-transport-https_1.0.10.2ubuntu2 autoconf_2.69-8 automake_1:1.15-1ubuntu1 autopoint_0.19.4-1ubuntu3 autotools-dev_20140911.1 base-files_7.2ubuntu11 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.1-6ubuntu2 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu0.15.10.1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-22ubuntu2 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20150811ubuntu2 debianutils_4.5.1 dh-autoreconf_10 dh-exec_0.16 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.2ubuntu5.1 dpkg-dev_1.18.2ubuntu5.1 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-22ubuntu2 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-22ubuntu2 gcc-5-base_5.2.1-22ubuntu2 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu4 initscripts_2.88dsf-59.2ubuntu2.1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu6 libapt-pkg4.16_1.0.10.2ubuntu2 libasan2_5.2.1-22ubuntu2 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-22ubuntu2 libattr1_1:2.4.47-2 libaudit-common_1:2.4.2-1ubuntu1 libaudit1_1:2.4.2-1ubuntu1 libblkid1_2.26.2-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4.3 libc-dev-bin_2.21-0ubuntu4.3 libc6_2.21-0ubuntu4.3 libc6-dev_2.21-0ubuntu4.3 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcc1-0_5.2.1-22ubuntu2 libcilkrts5_5.2.1-22ubuntu2 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3_7.43.0-1ubuntu2.1 libcurl3-gnutls_7.43.0-1ubuntu2.1 libcurl4-openssl-dev_7.43.0-1ubuntu2.1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-1ubuntu1 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.2ubuntu5.1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libgcc-5-dev_5.2.1-22ubuntu2 libgcc1_1:5.2.1-22ubuntu2 libgcrypt20_1.6.3-2ubuntu1.1 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-1ubuntu2 libgmp-dev_2:6.0.0+dfsg-7 libgmp10_2:6.0.0+dfsg-7 libgmpxx4ldbl_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu2 libgnutls-dev_3.3.15-5ubuntu2 libgnutls-openssl27_3.3.15-5ubuntu2 libgnutlsxx28_3.3.15-5ubuntu2 libgomp1_5.2.1-22ubuntu2 libgpg-error0_1.19-2 libgssapi-krb5-2_1.13.2+dfsg-2ubuntu0.1 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4ubuntu0.1 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-4ubuntu1 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libitm1_5.2.1-22ubuntu2 libk5crypto3_1.13.2+dfsg-2ubuntu0.1 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-2ubuntu0.1 libkrb5support0_1.13.2+dfsg-2ubuntu0.1 libldap-2.4-2_2.4.41+dfsg-1ubuntu2.1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.2.1-22ubuntu2 liblzma-dev_5.1.1alpha+20120614-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libmpx0_5.2.1-22ubuntu2 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4ubuntu0.1 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit-dev_0.23.1-3 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3.2 libpam-modules-bin_1.1.8-3.1ubuntu3.2 libpam-runtime_1.1.8-3.1ubuntu3.2 libpam0g_1.1.8-3.1ubuntu3.2 libpcre3_2:8.35-7.1ubuntu1.4 libpipeline1_1.4.1-1 libpng12-0_1.2.51-0ubuntu3.15.10.2 libprocps3_1:3.3.9-1ubuntu8 libquadmath0_5.2.1-22ubuntu2 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu3 libsnappy-dev_1.1.3-2 libsnappy1v5_1.1.3-2 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1.5 libstdc++-5-dev_5.2.1-22ubuntu2 libstdc++6_5.2.1-22ubuntu2 libsystemd0_225-1ubuntu9.1 libtasn1-6_4.5-2ubuntu0.1 libtasn1-6-dev_4.5-2ubuntu0.1 libtinfo5_5.9+20150516-2ubuntu1 libtool_2.4.2-1.11 libtsan0_5.2.1-22ubuntu2 libubsan0_5.2.1-22ubuntu2 libudev1_225-1ubuntu9.1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu0.3 linux-libc-dev_4.2.0-36.42 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 m4_1.4.17-4 make_4.0-8.2 man-db_2.7.4-1 mawk_1.3.3-17ubuntu2 mount_2.26.2-6ubuntu3 multiarch-support_2.21-0ubuntu4.3 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 nettle-dev_3.1.1-4ubuntu0.1 openssl_1.0.2d-0ubuntu1.5 optipng_0.7.5-1ubuntu0.1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6ubuntu0.2 perl-base_5.20.2-6ubuntu0.2 perl-modules_5.20.2-6ubuntu0.2 pkg-config_0.28-1ubuntu1 pkg-create-dbgsym_0.69 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libmaus2-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 seqan-dev_1.4.1+dfsg-2 staden-io-lib-trunk_1.13.10+532~ubuntu15.10.1 staden-io-lib-trunk-dev_1.13.10+532~ubuntu15.10.1 systemd_225-1ubuntu9.1 systemd-sysv_225-1ubuntu9.1 sysv-rc_2.88dsf-59.2ubuntu2.1 sysvinit-utils_2.88dsf-59.2ubuntu2.1 tar_1.27.1-2 tzdata_2016d-0ubuntu0.15.10 ubuntu-keyring_2012.05.19 udev_225-1ubuntu9.1 util-linux_2.26.2-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 yasm_1.3.0-2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── dpkg-source: warning: extracting unsigned source package (libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1.dsc) dpkg-source: info: extracting libmaus2 in libmaus2-2.0.195 dpkg-source: info: unpacking libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1.tar.xz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package libmaus2 dpkg-buildpackage: source version 2.0.195-1+342+201605271602~ubuntu15.10.1 dpkg-buildpackage: source distribution wily dpkg-source --before-build libmaus2-2.0.195 dpkg-buildpackage: host architecture amd64 dpkg-source: info: using options from libmaus2-2.0.195/debian/source/options: --single-debian-patch dpkg-source: warning: --single-debian-patch is not a valid option for Dpkg::Source::Package::V3::Native fakeroot debian/rules clean dh clean --with autoreconf --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_autoreconf_clean -O--parallel dh_clean -O--parallel rm -f debian/libmaus2.substvars rm -f debian/libmaus2.*.debhelper rm -rf debian/libmaus2/ rm -f debian/libmaus2-dev.substvars rm -f debian/libmaus2-dev.*.debhelper rm -rf debian/libmaus2-dev/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with autoreconf --parallel dh_testdir -O--parallel dh_autoreconf -O--parallel find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure -- --with-snappy --with-seqan --with-io_lib --with-gnutls --with-nettle --with-yasm --with-lzma --disable-ssse3 --disable-sse4 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-snappy --with-seqan --with-io_lib --with-gnutls --with-nettle --with-yasm --with-lzma --disable-ssse3 --disable-sse4 configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Configuring for source in directory . checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking how to create a pax tar archive... gnutar checking dependency style of gcc... none checking whether we are cross compiling... no checking for bash... /bin/bash checking for base64... /usr/bin/base64 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of g++... none checking whether host cpu is x86_64... yes checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... yes checking size of unsigned long... 8 checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for zlib... yes checking whether we can compile a zlib program... yes checking boost/regex.hpp usability... no checking boost/regex.hpp presence... no checking for boost/regex.hpp... no checking whether we can compile a program using the boost regex library... no checking snappy.h usability... yes checking snappy.h presence... yes checking for snappy.h... yes checking whether we can compile a program using snappy... yes checking for ANSI C header files... (cached) yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for unistd.h... (cached) yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking for stdint.h... (cached) yes checking for dlfcn.h... (cached) yes checking for dlopen... no checking for dlerror... no checking for dlsym... no checking for dlclose... no checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... yes checking for aio_suspend in -lrt... yes checking for backtrace... yes checking for setrlimit... yes checking whether the C++ compiler supports the -std=gnu++0x flag... yes checking whether the C++ compiler supports the -msse4 flag... yes checking whether the C++ compiler supports the -msse2 flag... yes checking whether the C++ compiler supports the -mssse3 flag... yes checking whether the C++ compiler supports the -msse4.1 flag... yes checking whether the C++ compiler supports the -mavx2 flag... yes checking smmintrin.h usability... yes checking smmintrin.h presence... yes checking for smmintrin.h... yes checking immintrin.h usability... yes checking immintrin.h presence... yes checking for immintrin.h... yes checking whether the C++ compiler supports _mm_load_si128... yes checking whether the C++ compiler supports _mm_loadu_si128... yes checking whether the C++ compiler supports _mm_store_si128... yes checking whether the C++ compiler supports _mm_andnot_si128... yes checking whether the C++ compiler supports _mm_or_si128... yes checking whether the C++ compiler supports _mm_cmpeq_epi8... yes checking whether the C++ compiler supports _mm_adds_epu8... yes checking whether the C++ compiler supports _mm_min_epu8... yes checking whether the C++ compiler supports _mm_shuffle_epi8... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... yes checking whether the C++ compiler supports _mm_cmpeq_epi16... yes checking whether the C++ compiler supports _mm_adds_epu16... yes checking whether the C++ compiler supports _mm_min_epu16... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... yes checking whether the C++ compiler supports _mm256_load_si256... yes checking whether the C++ compiler supports _mm256_loadu_si256... yes checking whether the C++ compiler supports _mm256_store_si256... yes checking whether the C++ compiler supports _mm256_andnot_si256... yes checking whether the C++ compiler supports _mm256_or_si256... yes checking whether the C++ compiler supports _mm256_cmpeq_epi8... yes checking whether the C++ compiler supports _mm256_adds_epu8... yes checking whether the C++ compiler supports _mm256_shuffle_epi8... yes checking whether the C++ compiler supports _mm256_min_epu8... yes checking whether the C++ compiler supports _mm256_permute2f128_si256... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... yes checking whether the C++ compiler supports _mm256_cmpeq_epi16... yes checking whether the C++ compiler supports _mm256_adds_epu16... yes checking whether the C++ compiler supports _mm256_min_epu16... yes checking whether the C++ compiler supports _mm256_max_epu16... yes checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... yes checking cstdint usability... yes checking cstdint presence... yes checking for cstdint... yes checking whether the C++ compiler supports the -msse4 flag... yes checking for mmap... yes checking for mmap flag MAP_HUGETLB... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wabi flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking boost/interprocess/smart_ptr/unique_ptr.hpp usability... no checking boost/interprocess/smart_ptr/unique_ptr.hpp presence... no checking for boost/interprocess/smart_ptr/unique_ptr.hpp... no checking boost/shared_ptr.hpp usability... no checking boost/shared_ptr.hpp presence... no checking for boost/shared_ptr.hpp... no checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking boost/unordered_map.hpp usability... no checking boost/unordered_map.hpp presence... no checking for boost/unordered_map.hpp... no checking boost/unordered_set.hpp usability... no checking boost/unordered_set.hpp presence... no checking for boost/unordered_set.hpp... no checking whether std::move exists... yes checking whether boost::move exists... no checking for sys/types.h... (cached) yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking for windows.h... (cached) no checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking seqan/align.h usability... yes checking seqan/align.h presence... yes checking for seqan/align.h... yes checking seqan/graph_msa.h usability... yes checking seqan/graph_msa.h presence... yes checking for seqan/graph_msa.h... yes checking seqan/score.h usability... yes checking seqan/score.h presence... yes checking for seqan/score.h... yes checking whether we can compile a SeqAN program... yes checking whether byte ordering is bigendian... no checking whether we can compile a program using posix regex... yes checking whether we can compile a program using statfs... yes checking whether the C++ compiler supports the -pthread flag... yes checking for pthread spin lock support... yes checking for sem_post... yes checking for sem_wait... yes checking for sem_init... yes checking for sem_destroy... yes checking for sem_timedwait... yes checking for pthread_setname_np... yes checking for pthread_set_name_np... no checking for pthread_getname_np... yes checking for pthread_get_name_np... no checking for pthread_setaffinity_np... yes checking for prctl... yes checking for pthread_setaffinity_np support... checking whether the C++ compiler supports __sync_fetch_and_add... yes checking whether the C++ compiler supports __sync_add_and_fetch... yes checking whether the C++ compiler supports __sync_fetch_and_and... yes checking whether the C++ compiler supports __sync_fetch_and_or... yes checking whether the C++ compiler supports __sync_fetch_and_sub... yes checking whether the C++ compiler supports __sync_bool_compare_and_swap... yes checking whether the C++ compiler supports __sync_lock_test_and_set... yes checking whether the C++ compiler supports __sync_lock_release... yes checking whether the C++ compiler supports __sync_val_compare_and_swap... yes checking whether the C++ compiler supports synchronous lock operations... yes checking whether posix_memalign is present... yes checking whether getpagesize is present... yes checking io_lib/scram.h usability... yes checking io_lib/scram.h presence... yes checking for io_lib/scram.h... yes checking for scram_open... yes checking for scram_open_cram_via_callbacks... yes checking for scram_close... yes checking for scram_get_header... yes checking for scram_get_seq... yes checking for scram_set_option... yes checking for scram_open_cram_via_callbacks... (cached) yes checking for cram_index_load_via_callbacks... yes checking for cram_allocate_encoder... yes checking for cram_deallocate_encoder... yes checking for cram_enque_compression_block... yes checking for cram_process_work_package... yes checking whether we can compile a program using io_lib... yes checking whether we can compile a program using scram_open_cram_via_callbacks in io_lib... yes checking whether we can compile a program using cram_index_load_via_callbacks in io_lib... yes checking whether MSG_CMSG_CLOEXEC is defined... yes checking for liblzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking whether we can compile a program using the lzma library... yes checking for gnutls... yes checking whether we can compile a gnutls program... yes checking for nettle... yes checking whether we can compile a nettle program... yes checking whether we can compile a program including nettle/sha3.h... yes checking libkern/OSAtomic.h usability... no checking libkern/OSAtomic.h presence... no checking for libkern/OSAtomic.h... no checking for unsigned __int128... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating libmaus2digests.pc config.status: creating libmaus2lsf.pc config.status: creating libmaus2irods.pc config.status: creating libmaus2seqchksumsfactory.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build -O--parallel make -j4 make[1]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/src' /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha256_sse4.o /«PKGBUILDDIR»/src/libmaus2/digest/sha256_sse4.asm /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha256_avx1.o /«PKGBUILDDIR»/src/libmaus2/digest/sha256_avx1.asm /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha512_avx.o /«PKGBUILDDIR»/src/libmaus2/digest/sha512_avx.asm /usr/bin/yasm -f x64 -f elf64 -X gnu -g dwarf2 -D LINUX -o sha512_sse4.o /«PKGBUILDDIR»/src/libmaus2/digest/sha512_sse4.asm g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse4 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-CRC32C_sse42.o `test -f 'libmaus2/digest/CRC32C_sse42.cpp' || echo './'`libmaus2/digest/CRC32C_sse42.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse4 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2digests_sse4_a-DigestFactory_CRC32C_SSE42.o `test -f 'libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp' || echo './'`libmaus2/digest/DigestFactory_CRC32C_SSE42.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2_la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-I386CacheLineSize.lo `test -f 'libmaus2/util/I386CacheLineSize.cpp' || echo './'`libmaus2/util/I386CacheLineSize.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/I386CacheLineSize.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-I386CacheLineSize.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/libmaus2_la-md5.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/libmaus2_la-md5.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-OutputFileNameTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/I386CacheLineSize.cpp -o libmaus2/util/libmaus2_la-I386CacheLineSize.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/libmaus2_la-OutputFileNameTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-CigarStringParser.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-Phred.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/libmaus2_la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-CollatingBamDecoder.lo `test -f 'libmaus2/bambam/CollatingBamDecoder.cpp' || echo './'`libmaus2/bambam/CollatingBamDecoder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CollatingBamDecoder.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-CollatingBamDecoder.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-ReadEndsContainer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/bambam/libmaus2_la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-ReadEnds.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/libmaus2_la-CigarStringParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/network/libmaus2_la-LogReceiver.lo `test -f 'libmaus2/network/LogReceiver.cpp' || echo './'`libmaus2/network/LogReceiver.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/network/LogReceiver.cpp -fPIC -DPIC -o libmaus2/network/.libs/libmaus2_la-LogReceiver.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -o libmaus2/bambam/libmaus2_la-ReadEnds.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/CollatingBamDecoder.cpp -o libmaus2/bambam/libmaus2_la-CollatingBamDecoder.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/network/LogReceiver.cpp -o libmaus2/network/libmaus2_la-LogReceiver.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 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'libmaus2/bambam/BamIndexBinChunk.cpp' || echo './'`libmaus2/bambam/BamIndexBinChunk.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-BamIndexBinChunk.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/BamIndexBinChunk.cpp -o libmaus2/bambam/libmaus2_la-BamIndexBinChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. 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libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-BamAlignmentDecoderInfo.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/graph/GraphEdge.cpp -o libmaus2/graph/libmaus2_la-GraphEdge.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/libmaus2_la-BamAlignmentDecoderInfo.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. 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echo './'`libmaus2/lz/Lz4Compress.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/Lz4Compress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/libmaus2_la-Lz4Compress.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/libmaus2_la-Lz4DecoderBuffer.lo `test -f 'libmaus2/lz/Lz4DecoderBuffer.cpp' || echo './'`libmaus2/lz/Lz4DecoderBuffer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi 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libmaus2/fastx/.libs/libmaus2_la-SingleWordDNABitBuffer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o 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-I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-AlignerFactory.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-BandedAlignerFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/libmaus2_la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/libmaus2_la-SingleWordDNABitBuffer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-DalignerNP.lo `test -f 'libmaus2/lcs/DalignerNP.cpp' || echo './'`libmaus2/lcs/DalignerNP.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerNP.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-DalignerNP.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/libmaus2_la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/libmaus2_la-OutputStreamInstance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/libmaus2_la-BandedAlignerFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerNP.cpp -o libmaus2/lcs/libmaus2_la-DalignerNP.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat 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'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/libmaus2_la-OutputStreamFactoryContainer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-TraceBlock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-ApproximateRun.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/libmaus2_la-ApproximateRun.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/libmaus2_la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/libmaus2_la-BwtMergeBlockSortRequest.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/libmaus2_la-TraceBlock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-OverlapMeta.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.lo `test -f 'libmaus2/lcs/DalignerLocalAlignment.cpp' || echo './'`libmaus2/lcs/DalignerLocalAlignment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerLocalAlignment.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-DalignerLocalAlignment.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/libmaus2_la-OutputStreamFactoryContainer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/libmaus2_la-OverlapMeta.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/DalignerLocalAlignment.cpp -o libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.o >/dev/null 2>&1 In file included from ./libmaus2/rank/ERank3C.hpp:28:0, from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from 'void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]' ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-Tandem.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-TandemVector.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/math/libmaus2_la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -fPIC -DPIC -o libmaus2/math/.libs/libmaus2_la-GmpInteger.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/libmaus2_la-Tandem.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/libmaus2_la-TandemVector.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -o libmaus2/math/libmaus2_la-GmpInteger.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/libmaus2_la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/math/libmaus2_la-GmpFloat.lo `test -f 'libmaus2/math/GmpFloat.cpp' || echo './'`libmaus2/math/GmpFloat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -fPIC -DPIC -o libmaus2/math/.libs/libmaus2_la-GmpFloat.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/dazzler/align/libmaus2_la-TracePoint.lo `test -f 'libmaus2/dazzler/align/TracePoint.cpp' || echo './'`libmaus2/dazzler/align/TracePoint.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/libmaus2_la-TracePoint.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/libmaus2_la-XzDecoder.lo `test -f 'libmaus2/lz/XzDecoder.cpp' || echo './'`libmaus2/lz/XzDecoder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -fPIC -DPIC -o libmaus2/lz/.libs/libmaus2_la-XzDecoder.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -o libmaus2/dazzler/align/libmaus2_la-TracePoint.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-ArgParser.lo `test -f 'libmaus2/util/ArgParser.cpp' || echo './'`libmaus2/util/ArgParser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-ArgParser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -o libmaus2/math/libmaus2_la-GmpFloat.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/ArgParser.cpp -o libmaus2/util/libmaus2_la-ArgParser.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-FragmentEnvelopeYScore.lo `test -f 'libmaus2/lcs/FragmentEnvelopeYScore.cpp' || echo './'`libmaus2/lcs/FragmentEnvelopeYScore.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/FragmentEnvelopeYScore.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-FragmentEnvelopeYScore.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/XzDecoder.cpp -o libmaus2/lz/libmaus2_la-XzDecoder.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/FragmentEnvelopeYScore.cpp -o libmaus2/lcs/libmaus2_la-FragmentEnvelopeYScore.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-FragmentEnvelopeFragment.lo `test -f 'libmaus2/lcs/FragmentEnvelopeFragment.cpp' || echo './'`libmaus2/lcs/FragmentEnvelopeFragment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/FragmentEnvelopeFragment.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-FragmentEnvelopeFragment.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataSequence.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataSequence.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataSequence.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataSequence.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataSequence.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/FragmentEnvelopeFragment.cpp -o libmaus2/lcs/libmaus2_la-FragmentEnvelopeFragment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-DNAIndexMetaData.lo `test -f 'libmaus2/fastx/DNAIndexMetaData.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaData.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaData.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/digest/libmaus2_la-SHA3_256.lo `test -f 'libmaus2/digest/SHA3_256.cpp' || echo './'`libmaus2/digest/SHA3_256.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/libmaus2_la-PileVectorElement.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -fPIC -DPIC -o libmaus2/digest/.libs/libmaus2_la-SHA3_256.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/bambam/PileVectorElement.cpp -o libmaus2/bambam/libmaus2_la-PileVectorElement.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaData.cpp -o libmaus2/fastx/libmaus2_la-DNAIndexMetaData.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor 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-O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/digest/SHA3_256.cpp -o libmaus2/digest/libmaus2_la-SHA3_256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBandBiDir.lo `test -f 'libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp' || echo './'`libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBand.cpp -o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-EnvelopeFragment.lo `test -f 'libmaus2/lcs/EnvelopeFragment.cpp' || echo './'`libmaus2/lcs/EnvelopeFragment.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/EnvelopeFragment.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-EnvelopeFragment.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/libmaus2_la-DNARankBiDirRange.lo `test -f 'libmaus2/rank/DNARankBiDirRange.cpp' || echo './'`libmaus2/rank/DNARankBiDirRange.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -fPIC -DPIC -o libmaus2/rank/.libs/libmaus2_la-DNARankBiDirRange.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 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-std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/EnvelopeFragment.cpp -o libmaus2/lcs/libmaus2_la-EnvelopeFragment.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-NNPTraceElement.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-NNPTraceContainer.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/libmaus2_la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_la-NNPAlignResult.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fastx/libmaus2_la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/libmaus2_la-FastAToCompact4BigBand.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/libmaus2_la-NNPAlignResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/util/libmaus2_la-HugePages.lo `test -f 'libmaus2/util/HugePages.cpp' || echo './'`libmaus2/util/HugePages.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtMergeSortResult.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -fPIC -DPIC -o libmaus2/util/.libs/libmaus2_la-HugePages.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/libmaus2_la-NNPTraceContainer.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/util/HugePages.cpp -o libmaus2/util/libmaus2_la-HugePages.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/libmaus2_la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/libmaus2_la-ZlibInterface.o In file included from ./libmaus2/rank/ERank3C.hpp:28:0, from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/gamma/GammaRLEncoder.hpp:190:27: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtSelectSSA.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/libmaus2_la-ZlibInterface.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/libmaus2_la-FastAToCompact4BigBand.o >/dev/null 2>&1 ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/gamma/GammaRLEncoder.hpp:164:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:37:0, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/rank/DNARank.hpp: In instantiation of 'void libmaus2::rank::DNARank::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]': ./libmaus2/rank/DNARank.hpp:705:5: required from 'void libmaus2::rank::DNARank::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]' ./libmaus2/rank/DNARank.hpp:1071:55: required from here ./libmaus2/rank/DNARank.hpp:672:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ ./libmaus2/rank/DNARank.hpp:687:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ In file included from ./libmaus2/rank/ERank3C.hpp:28:0, from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:24, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from 'void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]' ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/aio/libmaus2_la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/libmaus2_la-FileRemoval.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/libmaus2_la-FileRemoval.o >/dev/null 2>&1 In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from 'void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]' ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/RLEncoder.hpp:361:5: required from 'static void libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::concatenate(const std::vector >&, const string&, bool) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >; std::__cxx11::string = std::__cxx11::basic_string]' libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:360:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/rank/libmaus2_la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/libmaus2_la-DNARankMEM.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/libmaus2_la-DNARankMEM.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentConstants128.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentConstants128.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_8.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_8.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -o libmaus2/lcs/libmaus2_simd_align_128_la-SimdX86GlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentConstants256.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread 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libmaus2/network/sendReceiveFd.c -fPIC -DPIC -o libmaus2/network/.libs/libmaus2_la-sendReceiveFd.o cc1: warning: command line option '-Wnon-virtual-dtor' is valid for C++/ObjC++ but not for C libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -c libmaus2/network/sendReceiveFd.c -o libmaus2/network/libmaus2_la-sendReceiveFd.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/lz/libmaus2_la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/libmaus2_la-SnappyCompress.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/huffman/libmaus2_la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall 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-pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/libmaus2_la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/fm/libmaus2_la-MausFmToBwaConversion.lo `test -f 'libmaus2/fm/MausFmToBwaConversion.cpp' || echo './'`libmaus2/fm/MausFmToBwaConversion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -fPIC -DPIC -o libmaus2/fm/.libs/libmaus2_la-MausFmToBwaConversion.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o libmaus2/suffixtree/libmaus2_la-CompressedSuffixTree.lo `test -f 'libmaus2/suffixtree/CompressedSuffixTree.cpp' || echo './'`libmaus2/suffixtree/CompressedSuffixTree.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -fPIC -DPIC -o libmaus2/suffixtree/.libs/libmaus2_la-CompressedSuffixTree.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/libmaus2_la-IndexLoaderBase.o >/dev/null 2>&1 In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/gamma/GammaRLDecoder.hpp:26, from libmaus2/fm/MausFmToBwaConversion.cpp:24: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from 'void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]' ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 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libmaus2/parallel/libmaus2_la-SimpleThreadWorkPackage.lo `test -f 'libmaus2/parallel/SimpleThreadWorkPackage.cpp' || echo './'`libmaus2/parallel/SimpleThreadWorkPackage.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -fPIC -DPIC -o libmaus2/parallel/.libs/libmaus2_la-SimpleThreadWorkPackage.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/parallel/SimpleThreadWorkPackage.cpp -o 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-Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.195 libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so.2" && ln -s "libmaus2_simd_align_256.so.2.0.195" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.195" "libmaus2_simd_align_256.so") libtool: link: ar cru .libs/libmaus2_simd_align_256.a libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/libmaus2_simd_align_256_la-SimdX86GlobalAlignmentY256_16.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++0x -pthread -fopenmp -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -module -shared -export-dynamic -avoid-version -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_consensus_mod.la -rpath /usr/lib/x86_64-linux-gnu/libmaus2/2.0.195 libmaus2/consensus/libmaus2_consensus_mod_la-ConsensusBase.lo libmaus2/consensus/libmaus2_consensus_mod_la-ScoringMatrix.lo libmaus2/fastx/libmaus2_consensus_mod_la-Phred.lo -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbeginS.o libmaus2/consensus/.libs/libmaus2_consensus_mod_la-ConsensusBase.o libmaus2/consensus/.libs/libmaus2_consensus_mod_la-ScoringMatrix.o libmaus2/fastx/.libs/libmaus2_consensus_mod_la-Phred.o -L/usr/lib/x86_64-linux-gnu -lrt -lz -llzma -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -pthread -fopenmp -O2 -O3 -pthread -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_consensus_mod.so -o .libs/libmaus2_consensus_mod.so libtool: link: ( cd ".libs" && rm -f "libmaus2_consensus_mod.la" && ln -s "../libmaus2_consensus_mod.la" "libmaus2_consensus_mod.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -fopenmp -lstaden-read -Wl,-Bsymbolic-functions -Wl,-z,relro -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -module -shared -export-dynamic -avoid-version -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2_scram_mod.la -rpath /usr/lib/x86_64-linux-gnu/libmaus2/2.0.195 libmaus2/bambam/libmaus2_scram_mod_la-Scram.lo -lstaden-read -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: gcc -shared -fPIC -DPIC libmaus2/bambam/.libs/libmaus2_scram_mod_la-Scram.o -L/usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libstaden-read.so -lrt -lz -llzma -O2 -O3 -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2_scram_mod.so -o .libs/libmaus2_scram_mod.so libtool: link: ( cd ".libs" && rm -f "libmaus2_scram_mod.la" && ln -s "../libmaus2_scram_mod.la" "libmaus2_scram_mod.la" ) g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testAIO.o test/testAIO.cpp In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/RLEncoder.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/gamma/GammaRLEncoder.hpp:190:27: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from 'void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]' ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/gamma/GammaRLEncoder.hpp:164:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:37:0, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:47, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/rank/DNARank.hpp: In instantiation of 'void libmaus2::rank::DNARank::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]': ./libmaus2/rank/DNARank.hpp:705:5: required from 'void libmaus2::rank::DNARank::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]' ./libmaus2/rank/DNARank.hpp:1071:55: required from here ./libmaus2/rank/DNARank.hpp:672:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ ./libmaus2/rank/DNARank.hpp:687:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/RLEncoder.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]': ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from 'void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]' ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from 'void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]' ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbitbtree.o test/testbitbtree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBitIO.o test/testBitIO.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtComputeSSA.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbtree.o test/testbtree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBWTDyn.o test/testBWTDyn.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testBWTHufDyn.o test/testBWTHufDyn.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testDivSufSort.o test/testDivSufSort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testDNABitWords.o test/testDNABitWords.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testFastRead.o test/testFastRead.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testFork.o test/testFork.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testHuffman.o test/testHuffman.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testIsa.o test/testIsa.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testkmp.o test/testkmp.cpp In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from test/testHuffman.cpp:23: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/GapEncoder.hpp:67:34: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlz.o test/testlz.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testOS.o test/testOS.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from ./libmaus2/rank/ERank3C.hpp:28:0, from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/NearestNeighbourDictionary.hpp:24, from ./libmaus2/bp/BalancedParenthesesBase.hpp:23, from ./libmaus2/bp/BalancedParentheses.hpp:22, from test/testRank.cpp:23: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: test/testRank.cpp:1086:24: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testToWaveletTreeBits.o test/testToWaveletTreeBits.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testWaveletExternal.o test/testWaveletExternal.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testTrie.o test/testTrie.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testConsensus.o test/testConsensus.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbandedlcs.o test/testbandedlcs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSort.o >/dev/null 2>&1 g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamwriter.o test/testbamwriter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhashlcs-testhashlcs.o `test -f 'test/testhashlcs.cpp' || echo './'`test/testhashlcs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarraydecode.o test/testarraydecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgunzip.o test/testgunzip.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlogging.o test/testlogging.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testregex.o test/testregex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhashcollisions.o test/testhashcollisions.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplebloomcollisions.o test/testsimplebloomcollisions.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplehash.o test/testsimplehash.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplecountinghash.o test/testsimplecountinghash.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsyncreorderset.o test/testsyncreorderset.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcachealignedalloc.o test/testcachealignedalloc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testblocksynchronous.o test/testblocksynchronous.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsyncfastreaderbase.o test/testsyncfastreaderbase.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlsf-testlsf.o `test -f 'test/testlsf.cpp' || echo './'`test/testlsf.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlsfdispatcher.o test/testlsfdispatcher.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlsfclient.o test/testlsfclient.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlsfclientfw.o test/testlsfclientfw.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlsflist-testlsflist.o `test -f 'test/testlsflist.cpp' || echo './'`test/testlsflist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdl.o test/testdl.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdifenc.o test/testdifenc.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtmergeinternal.o test/testbwtmergeinternal.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastarewrite.o test/testfastarewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastarecode.o test/testfastarecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamrange.o test/testbamrange.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcompact.o test/testcompact.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbytetocompact.o test/testbytetocompact.cpp In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/gamma/GammaPartitionEncoder.hpp:25, from test/testgamma.cpp:20: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/gamma/GammaGapEncoder.hpp:130:27: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/gamma/GammaGapEncoder.hpp:104:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpacdecode.o test/testpacdecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testutf8split.o test/testutf8split.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrmmtree.o test/testrmmtree.cpp In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from test/testutf8split.cpp:27: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcst.o test/testcst.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamcmp.o test/testbamcmp.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamdif.o test/testbamdif.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testqreorder.o test/testqreorder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfqbgzf.o test/testfqbgzf.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testoverlap.o test/testoverlap.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcompactfastrandom.o test/testcompactfastrandom.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamindex.o test/testbamindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamrewrite.o test/testbamrewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastqstream.o test/testfastqstream.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsort.o test/testsort.cpp In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/LFSupportDecoder.hpp:33, from test/testsort.cpp:20: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = long unsigned int; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 9223372036854775808ul; _data_type fullmask = 18446744073709551615ul; bool _write_safe = true]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = long unsigned int; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 9223372036854775808ul; _data_type fullmask = 18446744073709551615ul; bool _write_safe = true]’ ./libmaus2/huffman/LFRankPosEncoder.hpp:153:31: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testexternalsort.o test/testexternalsort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamheaderparser.o test/testbamheaderparser.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammergecoordinate.o test/testbammergecoordinate.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammergequeryname.o test/testbammergequeryname.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbamcat.o test/testbamcat.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testautoarray2d.o test/testautoarray2d.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhist.o test/testhist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastaparse.o test/testfastaparse.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testvalidatebamindex.o test/testvalidatebamindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testeditdistance.o test/testeditdistance.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpool.o test/testthreadpool.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplethreadpool.o test/testsimplethreadpool.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testthreadpoolbamdecode.o test/testthreadpoolbamdecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgaparraybyte.o test/testgaparraybyte.cpp In file included from ./libmaus2/gamma/GammaGapEncoder.hpp:27:0, from ./libmaus2/suffixsort/GapArrayByte.hpp:24, from test/testgaparraybyte.cpp:24: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/gamma/GammaGapEncoder.hpp:130:27: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/gamma/GammaGapEncoder.hpp:104:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrazdec-testrazdec.o `test -f 'test/testrazdec.cpp' || echo './'`test/testrazdec.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfaindex.o test/testfaindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastablockrecode.o test/testfastablockrecode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/p11-kit-1 -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhttp-testhttp.o `test -f 'test/testhttp.cpp' || echo './'`test/testhttp.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/p11-kit-1 -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testftp-testftp.o `test -f 'test/testftp.cpp' || echo './'`test/testftp.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testrlhist.o test/testrlhist.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnumcpus.o test/testnumcpus.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlinuxstreamingwrite-testlinuxstreamingwrite.o `test -f 'test/testlinuxstreamingwrite.cpp' || echo './'`test/testlinuxstreamingwrite.cpp In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testrlhist.cpp:20: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/p11-kit-1 -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsimpletrie.o test/testsimpletrie.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/p11-kit-1 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgnutls-testgnutls.o `test -f 'test/testgnutls.cpp' || echo './'`test/testgnutls.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlru.o test/testlru.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbytecnt.o test/testbytecnt.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/teststronglyconnectedcomponents.o test/teststronglyconnectedcomponents.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testtopologicalsorting.o test/testtopologicalsorting.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsinglefileserver-testsinglefileserver.o `test -f 'test/testsinglefileserver.cpp' || echo './'`test/testsinglefileserver.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbammateerase.o test/testbammateerase.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testnd-testnd.o `test -f 'test/testnd.cpp' || echo './'`test/testnd.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfragmentenvelope-testfragmentenvelope.o `test -f 'test/testfragmentenvelope.cpp' || echo './'`test/testfragmentenvelope.cpp test/testdazzlerindex.cpp: In function ‘int main(int, char**)’: test/testdazzlerindex.cpp:45:19: warning: unused variable ‘omax’ [-Wunused-variable] uint64_t const omax = libmaus2::dazzler::db::InputBase::getLittleEndianInteger8(indexISI,off); ^ test/testdazzlerindex.cpp:46:19: warning: unused variable ‘ttot’ [-Wunused-variable] uint64_t const ttot = libmaus2::dazzler::db::InputBase::getLittleEndianInteger8(indexISI,off); ^ test/testdazzlerindex.cpp:47:19: warning: unused variable ‘smax’ [-Wunused-variable] uint64_t const smax = libmaus2::dazzler::db::InputBase::getLittleEndianInteger8(indexISI,off); ^ test/testdazzlerindex.cpp:48:19: warning: unused variable ‘tmax’ [-Wunused-variable] uint64_t const tmax = libmaus2::dazzler::db::InputBase::getLittleEndianInteger8(indexISI,off); ^ test/testdazzlerindex.cpp:28:17: warning: unused variable ‘tspace’ [-Wunused-variable] int64_t const tspace = libmaus2::dazzler::align::AlignmentFile::getTSpace(lasfn); ^ g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from test/testdnarank.cpp:18:0: ./libmaus2/rank/DNARank.hpp: In instantiation of ‘void libmaus2::rank::DNARank::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]’: ./libmaus2/rank/DNARank.hpp:705:5: required from ‘void libmaus2::rank::DNARank::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]’ ./libmaus2/rank/DNARank.hpp:1071:55: required from here ./libmaus2/rank/DNARank.hpp:672:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ ./libmaus2/rank/DNARank.hpp:687:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ In file included from ./libmaus2/huffman/hufEncodeString.hpp:25:0, from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/rank/DNARank.hpp:24, from test/testdnarank.cpp:18: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/RLEncoder.hpp:67:5: required from ‘libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::RLEncoderBaseTemplate(libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::bit_writer_type&, uint64_t, uint64_t) [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >; libmaus2::huffman::RLEncoderBaseTemplate<_bit_writer_type>::bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >; uint64_t = long unsigned int]’ ./libmaus2/huffman/RLEncoder.hpp:258:105: required from ‘libmaus2::huffman::RLEncoderTemplate<_huffmanencoderfile_type>::RLEncoderTemplate(const string&, uint64_t, uint64_t) [with _huffmanencoderfile_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >; std::__cxx11::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ test/testdnarank.cpp:38:57: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testhugepages-testhugepages.o `test -f 'test/testhugepages.cpp' || echo './'`test/testhugepages.cpp In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/RLEncoder.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstruction.cpp:19: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/gamma/GammaRLEncoder.hpp:190:27: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/gamma/GammaRLEncoder.hpp:164:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/RLEncoder.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/gamma/GammaRLEncoder.hpp:190:27: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/gamma/GammaRLEncoder.hpp:164:36: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:37:0, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:47, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstruction.cpp:19: ./libmaus2/rank/DNARank.hpp: In instantiation of ‘void libmaus2::rank::DNARank::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]’: ./libmaus2/rank/DNARank.hpp:705:5: required from ‘void libmaus2::rank::DNARank::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]’ ./libmaus2/rank/DNARank.hpp:1071:55: required from here ./libmaus2/rank/DNARank.hpp:672:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ ./libmaus2/rank/DNARank.hpp:687:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/RLEncoder.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstruction.cpp:19: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:37:0, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:47, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/rank/DNARank.hpp: In instantiation of ‘void libmaus2::rank::DNARank::mem(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]’: ./libmaus2/rank/DNARank.hpp:705:5: required from ‘void libmaus2::rank::DNARank::mems(iterator, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, std::vector&) const [with iterator = char*; uint64_t = long unsigned int]’ ./libmaus2/rank/DNARank.hpp:1071:55: required from here ./libmaus2/rank/DNARank.hpp:672:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ ./libmaus2/rank/DNARank.hpp:687:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( static_cast(P.second)-(ip+1) >= minlen ) ^ In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/SymCountEncoder.hpp:24, from test/testsymcnt.cpp:18: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ In file included from ./libmaus2/huffman/HuffmanEncoderFile.hpp:23:0, from ./libmaus2/huffman/RLEncoder.hpp:23, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long unsigned int; _data_type = unsigned char; _data_iterator = std::ostream_iterator; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/CanonicalEncoder.hpp:68:5: required from ‘void libmaus2::huffman::CanonicalEncoder::serialise(writer_type&) [with writer_type = libmaus2::bitio::FastWriteBitWriterTemplate, 128u, 255u, false>]’ ./libmaus2/huffman/CanonicalEncoder.hpp:119:18: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] writeInternal(n >> bottombits , topbits ); ^ ./libmaus2/bitio/FastWriteBitWriter.hpp: In instantiation of ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::write(N, unsigned int) [with N = unsigned int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’: ./libmaus2/bitio/FastWriteBitWriter.hpp:97:10: required from ‘void libmaus2::bitio::FastWriteBitWriterTemplate<_data_type, _data_iterator, basemask, fullmask, _write_safe>::writeElias2(N) [with N = long int; _data_type = unsigned char; _data_iterator = libmaus2::aio::PutOutputIterator >; _data_type basemask = 128u; _data_type fullmask = 255u; bool _write_safe = false]’ ./libmaus2/huffman/SymCountEncoder.hpp:295:5: required from ‘void libmaus2::huffman::SymCountEncoderBaseTemplate<_bit_writer_type>::encodeSyms() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >]’ ./libmaus2/huffman/SymCountEncoder.hpp:311:16: required from ‘void libmaus2::huffman::SymCountEncoderBaseTemplate<_bit_writer_type>::implicitFlush() [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >]’ ./libmaus2/huffman/SymCountEncoder.hpp:83:21: required from ‘void libmaus2::huffman::SymCountEncoderBaseTemplate<_bit_writer_type>::encode(const libmaus2::huffman::SymCount&) [with _bit_writer_type = libmaus2::huffman::HuffmanEncoderFileTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128u, 255u, false> >]’ test/testsymcnt.cpp:56:22: required from here ./libmaus2/bitio/FastWriteBitWriter.hpp:168:22: warning: right shift count >= width of type [-Wshift-count-overflow] g++ -DHAVE_CONFIG_H -I. -I.. -W -Wall -Wabi -Wnon-virtual-dtor -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp rm -f libmaus2digests.a ar cru libmaus2digests.a libmaus2/digest/SHA2_256_sse4.o libmaus2/digest/SHA2_512_sse4.o libmaus2/digest/DigestFactory_SHA2_ASM.o sha256_sse4.o sha256_avx1.o sha512_avx.o sha512_sse4.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmaus2digests.a rm -f libmaus2_irods.a ar cru libmaus2_irods.a libmaus2/irods/libmaus2_irods_a-IRodsSystem.o libmaus2/irods/libmaus2_irods_a-IRodsFileBase.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmaus2_irods.a rm -f libmaus2seqchksumsfactory.a ar cru libmaus2seqchksumsfactory.a libmaus2/bambam/libmaus2seqchksumsfactory_a-ChecksumsFactory.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libmaus2seqchksumsfactory.a /bin/bash ../libtool --tag=CXX --mode=link g++ -std=gnu++0x -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:195:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/libmaus2_la-StaticInitialization.lo libmaus2/autoarray/libmaus2_la-AutoArray.lo libmaus2/bitio/libmaus2_la-CompactArray.lo libmaus2/rank/libmaus2_la-RankTable.lo libmaus2/rank/libmaus2_la-log2table.lo libmaus2/fastx/libmaus2_la-isFastQ.lo libmaus2/wavelet/libmaus2_la-toWaveletTreeBits.lo libmaus2/suffixsort/libmaus2_la-divsufsort.lo libmaus2/rmq/libmaus2_la-FischerSystematicSuccinctRMQ.lo libmaus2/lcp/libmaus2_la-OracleLCP.lo libmaus2/util/libmaus2_la-StackTrace.lo libmaus2/lcs/libmaus2_la-OverlapComputation.lo libmaus2/lcs/libmaus2_la-HashContainer.lo libmaus2/lcs/libmaus2_la-HashContainer2.lo libmaus2/digest/libmaus2_la-md5.lo libmaus2/util/libmaus2_la-I386CacheLineSize.lo libmaus2/math/libmaus2_la-primes16.lo libmaus2/util/libmaus2_la-OutputFileNameTools.lo libmaus2/select/libmaus2_la-ESelectBase.lo libmaus2/bambam/libmaus2_la-CigarStringParser.lo libmaus2/consensus/libmaus2_la-Consensus.lo libmaus2/graph/libmaus2_la-EdgeList.lo libmaus2/fastx/libmaus2_la-Phred.lo libmaus2/network/libmaus2_la-sendReceiveFd.lo libmaus2/lz/libmaus2_la-SnappyCompress.lo libmaus2/bambam/libmaus2_la-CollatingBamDecoder.lo libmaus2/bambam/libmaus2_la-ReadEndsContainer.lo libmaus2/bambam/libmaus2_la-ReadEnds.lo libmaus2/network/libmaus2_la-LogReceiver.lo libmaus2/huffman/libmaus2_la-IndexLoaderBase.lo libmaus2/bambam/libmaus2_la-BamAlignmentDecoderBase.lo libmaus2/bambam/libmaus2_la-StrCmpNum.lo libmaus2/huffman/libmaus2_la-KvInitResult.lo libmaus2/fm/libmaus2_la-MausFmToBwaConversion.lo libmaus2/util/libmaus2_la-TempFileNameGenerator.lo libmaus2/util/libmaus2_la-TempFileNameGeneratorState.lo libmaus2/util/libmaus2_la-ArgInfo.lo libmaus2/util/libmaus2_la-Array832.lo libmaus2/util/libmaus2_la-Array864.lo libmaus2/util/libmaus2_la-BitList.lo libmaus2/util/libmaus2_la-VarBitList.lo libmaus2/util/libmaus2_la-Concat.lo libmaus2/util/libmaus2_la-ConcatRequest.lo libmaus2/util/libmaus2_la-ConsoleColor.lo libmaus2/util/libmaus2_la-Demangle.lo libmaus2/util/libmaus2_la-DynamicLoading.lo libmaus2/util/libmaus2_la-ForkProcess.lo libmaus2/util/libmaus2_la-LSFSim.lo libmaus2/util/libmaus2_la-ForkProcessLSFSim.lo libmaus2/util/libmaus2_la-GetFileSize.lo libmaus2/util/libmaus2_la-Histogram.lo libmaus2/util/libmaus2_la-HistogramSet.lo libmaus2/util/libmaus2_la-IncreasingList.lo libmaus2/util/libmaus2_la-IntervalTree.lo libmaus2/util/libmaus2_la-GenericIntervalTree.lo libmaus2/util/libmaus2_la-LogPipe.lo libmaus2/util/libmaus2_la-LogPipeMultiplex.lo libmaus2/util/libmaus2_la-LogPipeMultiplexGeneric.lo libmaus2/util/libmaus2_la-LookupIntervalTree.lo libmaus2/digest/libmaus2_la-md5_interface.lo libmaus2/util/libmaus2_la-MemLimit.lo libmaus2/util/libmaus2_la-MemUsage.lo libmaus2/util/libmaus2_la-NearestNeighbourDictionary.lo libmaus2/util/libmaus2_la-NegativeDifferenceArray32.lo libmaus2/util/libmaus2_la-NegativeDifferenceArray64.lo libmaus2/util/libmaus2_la-nstat.lo libmaus2/util/libmaus2_la-PositiveDifferenceArray32.lo libmaus2/util/libmaus2_la-PositiveDifferenceArray64.lo libmaus2/util/libmaus2_la-PosixExecute.lo libmaus2/util/libmaus2_la-PosixFileDescriptor.lo libmaus2/util/libmaus2_la-PosixInputFile.lo libmaus2/util/libmaus2_la-SaturatingCounter.lo libmaus2/util/libmaus2_la-StringSerialisation.lo libmaus2/util/libmaus2_la-SuccinctBorderArray.lo libmaus2/util/libmaus2_la-Terminal.lo libmaus2/util/libmaus2_la-OctetString.lo libmaus2/util/libmaus2_la-Utf8String.lo libmaus2/util/libmaus2_la-Utf8BlockIndexDecoder.lo libmaus2/util/libmaus2_la-Utf8BlockIndex.lo libmaus2/util/libmaus2_la-Utf8DecoderBuffer.lo libmaus2/util/libmaus2_la-Utf8DecoderWrapper.lo libmaus2/suffixtree/libmaus2_la-CompressedSuffixTree.lo libmaus2/bambam/libmaus2_la-AlignmentValidity.lo libmaus2/bambam/libmaus2_la-BamFlagBase.lo libmaus2/bambam/libmaus2_la-ReadGroup.lo libmaus2/bambam/libmaus2_la-DuplicationMetrics.lo libmaus2/bambam/libmaus2_la-BamDefaultAdapters.lo libmaus2/bambam/libmaus2_la-BamRange.lo libmaus2/graph/libmaus2_la-GraphEdge.lo libmaus2/bambam/libmaus2_la-BamIndexBinChunk.lo libmaus2/bambam/libmaus2_la-BamIndexLinearChunk.lo libmaus2/huffman/libmaus2_la-HuffmanTree.lo libmaus2/bambam/libmaus2_la-BamAlignmentDecoderInfo.lo libmaus2/lz/libmaus2_la-Lz4Base.lo libmaus2/lz/libmaus2_la-Lz4Compress.lo libmaus2/lz/libmaus2_la-Lz4DecoderBuffer.lo libmaus2/lz/libmaus2_la-lz4.lo libmaus2/fm/libmaus2_la-BidirectionalIndexInterval.lo libmaus2/fm/libmaus2_la-BidirectionalIndexIntervalSymbol.lo libmaus2/gamma/libmaus2_la-SparseGammaGapFileIndexDecoderEntry.lo libmaus2/fastx/libmaus2_la-FastALineParserLineInfo.lo libmaus2/fastx/libmaus2_la-FastAMatchTable.lo libmaus2/lcs/libmaus2_la-EditDistanceResult.lo libmaus2/fastx/libmaus2_la-FastABgzfIndexEntry.lo libmaus2/fastx/libmaus2_la-FastABgzfIndex.lo libmaus2/parallel/libmaus2_la-ThreadWorkPackage.lo libmaus2/parallel/libmaus2_la-SimpleThreadWorkPackage.lo libmaus2/lz/libmaus2_la-RAZFIndex.lo libmaus2/fastx/libmaus2_la-FastAIndexEntry.lo libmaus2/fastx/libmaus2_la-FastAIndex.lo libmaus2/network/libmaus2_la-HttpAbsoluteUrl.lo libmaus2/hashing/libmaus2_la-Crc32.lo libmaus2/hashing/libmaus2_la-MurmurHash3.lo libmaus2/lz/libmaus2_la-IGzipDeflate.lo libmaus2/lcs/libmaus2_la-LocalBaseConstants.lo libmaus2/lcs/libmaus2_la-LocalEditDistanceResult.lo libmaus2/bambam/libmaus2_la-BamHeaderParserStateBase.lo libmaus2/bambam/libmaus2_la-GeneFlatFile.lo libmaus2/bambam/libmaus2_la-GeneFlatFileEntry.lo libmaus2/trie/libmaus2_la-SimpleTrie.lo libmaus2/network/libmaus2_la-GnuTLSInit.lo libmaus2/network/libmaus2_la-GnuTLSSocket.lo libmaus2/bambam/libmaus2_la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/libmaus2_la-FactorMatchInfo.lo libmaus2/alignment/libmaus2_la-KmerInfo.lo libmaus2/bambam/libmaus2_la-SamInfoBase.lo libmaus2/digest/libmaus2_la-SHA1.lo libmaus2/digest/libmaus2_la-SHA2_224.lo libmaus2/digest/libmaus2_la-SHA2_256.lo libmaus2/digest/libmaus2_la-SHA2_384.lo libmaus2/digest/libmaus2_la-SHA2_512.lo libmaus2/digest/libmaus2_la-CRC32.lo libmaus2/digest/libmaus2_la-CRC32C_Core.lo libmaus2/digest/libmaus2_la-CRC32C.lo libmaus2/digest/libmaus2_la-CRC32_Core.lo libmaus2/bambam/parallel/libmaus2_la-ValidationFragment.lo libmaus2/bambam/parallel/libmaus2_la-GenericInputControlStreamInfo.lo libmaus2/fastx/libmaus2_la-NameInfoBase.lo libmaus2/bambam/parallel/libmaus2_la-RefIdInterval.lo libmaus2/fastx/libmaus2_la-RefPathToken.lo libmaus2/fastx/libmaus2_la-RefPathTokenVector.lo libmaus2/dazzler/db/libmaus2_la-FastaInfo.lo libmaus2/dazzler/db/libmaus2_la-IndexBase.lo libmaus2/dazzler/db/libmaus2_la-DatabaseFile.lo libmaus2/dazzler/db/libmaus2_la-Read.lo libmaus2/dazzler/align/libmaus2_la-Path.lo libmaus2/dazzler/align/libmaus2_la-Overlap.lo libmaus2/lcs/libmaus2_la-AlignmentStatistics.lo libmaus2/fastx/libmaus2_la-SingleWordDNABitBuffer.lo libmaus2/util/libmaus2_la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/libmaus2_la-AlignerFactory.lo libmaus2/lcs/libmaus2_la-BandedAlignerFactory.lo libmaus2/aio/libmaus2_la-InputStreamInstance.lo libmaus2/lcs/libmaus2_la-DalignerNP.lo libmaus2/aio/libmaus2_la-OutputStreamInstance.lo libmaus2/aio/libmaus2_la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/libmaus2_la-TraceBlock.lo libmaus2/dazzler/align/libmaus2_la-ApproximateRun.lo libmaus2/suffixsort/libmaus2_la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/libmaus2_la-OverlapMeta.lo libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.lo libmaus2/dazzler/align/libmaus2_la-Tandem.lo libmaus2/dazzler/align/libmaus2_la-TandemVector.lo libmaus2/math/libmaus2_la-GmpInteger.lo libmaus2/math/libmaus2_la-GmpFloat.lo libmaus2/dazzler/align/libmaus2_la-TracePoint.lo libmaus2/lz/libmaus2_la-XzDecoder.lo libmaus2/util/libmaus2_la-ArgParser.lo libmaus2/lcs/libmaus2_la-FragmentEnvelopeYScore.lo libmaus2/lcs/libmaus2_la-FragmentEnvelopeFragment.lo libmaus2/fastx/libmaus2_la-DNAIndexMetaDataSequence.lo libmaus2/fastx/libmaus2_la-DNAIndexMetaData.lo libmaus2/bambam/libmaus2_la-PileVectorElement.lo libmaus2/digest/libmaus2_la-SHA3_256.lo libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/lcs/libmaus2_la-EnvelopeFragment.lo libmaus2/rank/libmaus2_la-DNARankBiDirRange.lo libmaus2/lcs/libmaus2_la-NNPTraceElement.lo libmaus2/lcs/libmaus2_la-NNPTraceContainer.lo libmaus2/lcs/libmaus2_la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/libmaus2_la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtComputeSSA.lo libmaus2/fastx/libmaus2_la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSortResult.lo libmaus2/util/libmaus2_la-HugePages.lo libmaus2/lz/libmaus2_la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtSelectSSA.lo libmaus2/aio/libmaus2_la-FileRemoval.lo libmaus2/rank/libmaus2_la-DNARankMEM.lo -ldl -lsnappy -L/usr/lib/x86_64-linux-gnu -lz -lgnutls -lnettle -llzma -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbeginS.o libmaus2/.libs/libmaus2_la-StaticInitialization.o libmaus2/autoarray/.libs/libmaus2_la-AutoArray.o libmaus2/bitio/.libs/libmaus2_la-CompactArray.o libmaus2/rank/.libs/libmaus2_la-RankTable.o libmaus2/rank/.libs/libmaus2_la-log2table.o libmaus2/fastx/.libs/libmaus2_la-isFastQ.o libmaus2/wavelet/.libs/libmaus2_la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/libmaus2_la-divsufsort.o libmaus2/rmq/.libs/libmaus2_la-FischerSystematicSuccinctRMQ.o libmaus2/lcp/.libs/libmaus2_la-OracleLCP.o libmaus2/util/.libs/libmaus2_la-StackTrace.o libmaus2/lcs/.libs/libmaus2_la-OverlapComputation.o libmaus2/lcs/.libs/libmaus2_la-HashContainer.o libmaus2/lcs/.libs/libmaus2_la-HashContainer2.o libmaus2/digest/.libs/libmaus2_la-md5.o libmaus2/util/.libs/libmaus2_la-I386CacheLineSize.o libmaus2/math/.libs/libmaus2_la-primes16.o libmaus2/util/.libs/libmaus2_la-OutputFileNameTools.o libmaus2/select/.libs/libmaus2_la-ESelectBase.o libmaus2/bambam/.libs/libmaus2_la-CigarStringParser.o libmaus2/consensus/.libs/libmaus2_la-Consensus.o libmaus2/graph/.libs/libmaus2_la-EdgeList.o libmaus2/fastx/.libs/libmaus2_la-Phred.o libmaus2/network/.libs/libmaus2_la-sendReceiveFd.o libmaus2/lz/.libs/libmaus2_la-SnappyCompress.o libmaus2/bambam/.libs/libmaus2_la-CollatingBamDecoder.o libmaus2/bambam/.libs/libmaus2_la-ReadEndsContainer.o libmaus2/bambam/.libs/libmaus2_la-ReadEnds.o libmaus2/network/.libs/libmaus2_la-LogReceiver.o libmaus2/huffman/.libs/libmaus2_la-IndexLoaderBase.o libmaus2/bambam/.libs/libmaus2_la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/libmaus2_la-StrCmpNum.o libmaus2/huffman/.libs/libmaus2_la-KvInitResult.o libmaus2/fm/.libs/libmaus2_la-MausFmToBwaConversion.o libmaus2/util/.libs/libmaus2_la-TempFileNameGenerator.o libmaus2/util/.libs/libmaus2_la-TempFileNameGeneratorState.o libmaus2/util/.libs/libmaus2_la-ArgInfo.o libmaus2/util/.libs/libmaus2_la-Array832.o libmaus2/util/.libs/libmaus2_la-Array864.o libmaus2/util/.libs/libmaus2_la-BitList.o libmaus2/util/.libs/libmaus2_la-VarBitList.o libmaus2/util/.libs/libmaus2_la-Concat.o libmaus2/util/.libs/libmaus2_la-ConcatRequest.o libmaus2/util/.libs/libmaus2_la-ConsoleColor.o libmaus2/util/.libs/libmaus2_la-Demangle.o libmaus2/util/.libs/libmaus2_la-DynamicLoading.o libmaus2/util/.libs/libmaus2_la-ForkProcess.o libmaus2/util/.libs/libmaus2_la-LSFSim.o libmaus2/util/.libs/libmaus2_la-ForkProcessLSFSim.o libmaus2/util/.libs/libmaus2_la-GetFileSize.o libmaus2/util/.libs/libmaus2_la-Histogram.o libmaus2/util/.libs/libmaus2_la-HistogramSet.o libmaus2/util/.libs/libmaus2_la-IncreasingList.o libmaus2/util/.libs/libmaus2_la-IntervalTree.o libmaus2/util/.libs/libmaus2_la-GenericIntervalTree.o libmaus2/util/.libs/libmaus2_la-LogPipe.o libmaus2/util/.libs/libmaus2_la-LogPipeMultiplex.o libmaus2/util/.libs/libmaus2_la-LogPipeMultiplexGeneric.o libmaus2/util/.libs/libmaus2_la-LookupIntervalTree.o libmaus2/digest/.libs/libmaus2_la-md5_interface.o libmaus2/util/.libs/libmaus2_la-MemLimit.o libmaus2/util/.libs/libmaus2_la-MemUsage.o libmaus2/util/.libs/libmaus2_la-NearestNeighbourDictionary.o libmaus2/util/.libs/libmaus2_la-NegativeDifferenceArray32.o libmaus2/util/.libs/libmaus2_la-NegativeDifferenceArray64.o libmaus2/util/.libs/libmaus2_la-nstat.o libmaus2/util/.libs/libmaus2_la-PositiveDifferenceArray32.o libmaus2/util/.libs/libmaus2_la-PositiveDifferenceArray64.o libmaus2/util/.libs/libmaus2_la-PosixExecute.o libmaus2/util/.libs/libmaus2_la-PosixFileDescriptor.o libmaus2/util/.libs/libmaus2_la-PosixInputFile.o libmaus2/util/.libs/libmaus2_la-SaturatingCounter.o libmaus2/util/.libs/libmaus2_la-StringSerialisation.o libmaus2/util/.libs/libmaus2_la-SuccinctBorderArray.o libmaus2/util/.libs/libmaus2_la-Terminal.o libmaus2/util/.libs/libmaus2_la-OctetString.o libmaus2/util/.libs/libmaus2_la-Utf8String.o libmaus2/util/.libs/libmaus2_la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/libmaus2_la-Utf8BlockIndex.o libmaus2/util/.libs/libmaus2_la-Utf8DecoderBuffer.o libmaus2/util/.libs/libmaus2_la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/libmaus2_la-CompressedSuffixTree.o libmaus2/bambam/.libs/libmaus2_la-AlignmentValidity.o libmaus2/bambam/.libs/libmaus2_la-BamFlagBase.o libmaus2/bambam/.libs/libmaus2_la-ReadGroup.o libmaus2/bambam/.libs/libmaus2_la-DuplicationMetrics.o libmaus2/bambam/.libs/libmaus2_la-BamDefaultAdapters.o libmaus2/bambam/.libs/libmaus2_la-BamRange.o libmaus2/graph/.libs/libmaus2_la-GraphEdge.o libmaus2/bambam/.libs/libmaus2_la-BamIndexBinChunk.o libmaus2/bambam/.libs/libmaus2_la-BamIndexLinearChunk.o libmaus2/huffman/.libs/libmaus2_la-HuffmanTree.o libmaus2/bambam/.libs/libmaus2_la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/libmaus2_la-Lz4Base.o libmaus2/lz/.libs/libmaus2_la-Lz4Compress.o libmaus2/lz/.libs/libmaus2_la-Lz4DecoderBuffer.o libmaus2/lz/.libs/libmaus2_la-lz4.o libmaus2/fm/.libs/libmaus2_la-BidirectionalIndexInterval.o libmaus2/fm/.libs/libmaus2_la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/libmaus2_la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/libmaus2_la-FastALineParserLineInfo.o libmaus2/fastx/.libs/libmaus2_la-FastAMatchTable.o libmaus2/lcs/.libs/libmaus2_la-EditDistanceResult.o libmaus2/fastx/.libs/libmaus2_la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/libmaus2_la-FastABgzfIndex.o libmaus2/parallel/.libs/libmaus2_la-ThreadWorkPackage.o libmaus2/parallel/.libs/libmaus2_la-SimpleThreadWorkPackage.o libmaus2/lz/.libs/libmaus2_la-RAZFIndex.o libmaus2/fastx/.libs/libmaus2_la-FastAIndexEntry.o libmaus2/fastx/.libs/libmaus2_la-FastAIndex.o libmaus2/network/.libs/libmaus2_la-HttpAbsoluteUrl.o libmaus2/hashing/.libs/libmaus2_la-Crc32.o libmaus2/hashing/.libs/libmaus2_la-MurmurHash3.o libmaus2/lz/.libs/libmaus2_la-IGzipDeflate.o libmaus2/lcs/.libs/libmaus2_la-LocalBaseConstants.o libmaus2/lcs/.libs/libmaus2_la-LocalEditDistanceResult.o libmaus2/bambam/.libs/libmaus2_la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/libmaus2_la-GeneFlatFile.o libmaus2/bambam/.libs/libmaus2_la-GeneFlatFileEntry.o libmaus2/trie/.libs/libmaus2_la-SimpleTrie.o libmaus2/network/.libs/libmaus2_la-GnuTLSInit.o libmaus2/network/.libs/libmaus2_la-GnuTLSSocket.o libmaus2/bambam/.libs/libmaus2_la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/libmaus2_la-FactorMatchInfo.o libmaus2/alignment/.libs/libmaus2_la-KmerInfo.o libmaus2/bambam/.libs/libmaus2_la-SamInfoBase.o libmaus2/digest/.libs/libmaus2_la-SHA1.o libmaus2/digest/.libs/libmaus2_la-SHA2_224.o libmaus2/digest/.libs/libmaus2_la-SHA2_256.o libmaus2/digest/.libs/libmaus2_la-SHA2_384.o libmaus2/digest/.libs/libmaus2_la-SHA2_512.o libmaus2/digest/.libs/libmaus2_la-CRC32.o libmaus2/digest/.libs/libmaus2_la-CRC32C_Core.o libmaus2/digest/.libs/libmaus2_la-CRC32C.o libmaus2/digest/.libs/libmaus2_la-CRC32_Core.o libmaus2/bambam/parallel/.libs/libmaus2_la-ValidationFragment.o libmaus2/bambam/parallel/.libs/libmaus2_la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/libmaus2_la-NameInfoBase.o libmaus2/bambam/parallel/.libs/libmaus2_la-RefIdInterval.o libmaus2/fastx/.libs/libmaus2_la-RefPathToken.o libmaus2/fastx/.libs/libmaus2_la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/libmaus2_la-FastaInfo.o libmaus2/dazzler/db/.libs/libmaus2_la-IndexBase.o libmaus2/dazzler/db/.libs/libmaus2_la-DatabaseFile.o libmaus2/dazzler/db/.libs/libmaus2_la-Read.o libmaus2/dazzler/align/.libs/libmaus2_la-Path.o libmaus2/dazzler/align/.libs/libmaus2_la-Overlap.o libmaus2/lcs/.libs/libmaus2_la-AlignmentStatistics.o libmaus2/fastx/.libs/libmaus2_la-SingleWordDNABitBuffer.o libmaus2/util/.libs/libmaus2_la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/libmaus2_la-AlignerFactory.o libmaus2/lcs/.libs/libmaus2_la-BandedAlignerFactory.o libmaus2/aio/.libs/libmaus2_la-InputStreamInstance.o libmaus2/lcs/.libs/libmaus2_la-DalignerNP.o libmaus2/aio/.libs/libmaus2_la-OutputStreamInstance.o libmaus2/aio/.libs/libmaus2_la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/libmaus2_la-TraceBlock.o libmaus2/dazzler/align/.libs/libmaus2_la-ApproximateRun.o libmaus2/suffixsort/.libs/libmaus2_la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/libmaus2_la-OverlapMeta.o libmaus2/lcs/.libs/libmaus2_la-DalignerLocalAlignment.o libmaus2/dazzler/align/.libs/libmaus2_la-Tandem.o libmaus2/dazzler/align/.libs/libmaus2_la-TandemVector.o libmaus2/math/.libs/libmaus2_la-GmpInteger.o libmaus2/math/.libs/libmaus2_la-GmpFloat.o libmaus2/dazzler/align/.libs/libmaus2_la-TracePoint.o libmaus2/lz/.libs/libmaus2_la-XzDecoder.o libmaus2/util/.libs/libmaus2_la-ArgParser.o libmaus2/lcs/.libs/libmaus2_la-FragmentEnvelopeYScore.o libmaus2/lcs/.libs/libmaus2_la-FragmentEnvelopeFragment.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaData.o libmaus2/bambam/.libs/libmaus2_la-PileVectorElement.o libmaus2/digest/.libs/libmaus2_la-SHA3_256.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o libmaus2/lcs/.libs/libmaus2_la-EnvelopeFragment.o libmaus2/rank/.libs/libmaus2_la-DNARankBiDirRange.o libmaus2/lcs/.libs/libmaus2_la-NNPTraceElement.o libmaus2/lcs/.libs/libmaus2_la-NNPTraceContainer.o libmaus2/lcs/.libs/libmaus2_la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtComputeSSA.o libmaus2/fastx/.libs/libmaus2_la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtMergeSortResult.o libmaus2/util/.libs/libmaus2_la-HugePages.o libmaus2/lz/.libs/libmaus2_la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/libmaus2_la-BwtSelectSSA.o libmaus2/aio/.libs/libmaus2_la-FileRemoval.o libmaus2/rank/.libs/libmaus2_la-DNARankMEM.o -ldl -lsnappy -L/usr/lib/x86_64-linux-gnu -lgnutls -lnettle -lrt -lz -llzma -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -pthread -fopenmp -O2 -O3 -pthread -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.195 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -version-info 2:195:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o libmaus2lsf.la -rpath /usr/lib/x86_64-linux-gnu libmaus2/lsf/libmaus2lsf_la-LSFProcess.lo -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbeginS.o libmaus2/lsf/.libs/libmaus2lsf_la-LSFProcess.o -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -O2 -O3 -pthread -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -pthread -fopenmp -Wl,-soname -Wl,libmaus2lsf.so.2 -o .libs/libmaus2lsf.so.2.0.195 libtool: link: (cd ".libs" && rm -f "libmaus2lsf.so.2" && ln -s "libmaus2lsf.so.2.0.195" "libmaus2lsf.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2lsf.so" && ln -s "libmaus2lsf.so.2.0.195" "libmaus2lsf.so") libtool: link: ar cru .libs/libmaus2lsf.a libmaus2/lsf/libmaus2lsf_la-LSFProcess.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libmaus2lsf.a libtool: link: ( cd ".libs" && rm -f "libmaus2lsf.la" && ln -s "../libmaus2lsf.la" "libmaus2lsf.la" ) libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.195" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.195" "libmaus2.so") libtool: link: ar cru .libs/libmaus2.a libmaus2/libmaus2_la-StaticInitialization.o libmaus2/autoarray/libmaus2_la-AutoArray.o libmaus2/bitio/libmaus2_la-CompactArray.o libmaus2/rank/libmaus2_la-RankTable.o libmaus2/rank/libmaus2_la-log2table.o libmaus2/fastx/libmaus2_la-isFastQ.o libmaus2/wavelet/libmaus2_la-toWaveletTreeBits.o libmaus2/suffixsort/libmaus2_la-divsufsort.o libmaus2/rmq/libmaus2_la-FischerSystematicSuccinctRMQ.o libmaus2/lcp/libmaus2_la-OracleLCP.o libmaus2/util/libmaus2_la-StackTrace.o libmaus2/lcs/libmaus2_la-OverlapComputation.o libmaus2/lcs/libmaus2_la-HashContainer.o libmaus2/lcs/libmaus2_la-HashContainer2.o libmaus2/digest/libmaus2_la-md5.o libmaus2/util/libmaus2_la-I386CacheLineSize.o libmaus2/math/libmaus2_la-primes16.o libmaus2/util/libmaus2_la-OutputFileNameTools.o libmaus2/select/libmaus2_la-ESelectBase.o libmaus2/bambam/libmaus2_la-CigarStringParser.o libmaus2/consensus/libmaus2_la-Consensus.o libmaus2/graph/libmaus2_la-EdgeList.o libmaus2/fastx/libmaus2_la-Phred.o libmaus2/network/libmaus2_la-sendReceiveFd.o libmaus2/lz/libmaus2_la-SnappyCompress.o libmaus2/bambam/libmaus2_la-CollatingBamDecoder.o libmaus2/bambam/libmaus2_la-ReadEndsContainer.o libmaus2/bambam/libmaus2_la-ReadEnds.o libmaus2/network/libmaus2_la-LogReceiver.o libmaus2/huffman/libmaus2_la-IndexLoaderBase.o libmaus2/bambam/libmaus2_la-BamAlignmentDecoderBase.o libmaus2/bambam/libmaus2_la-StrCmpNum.o libmaus2/huffman/libmaus2_la-KvInitResult.o libmaus2/fm/libmaus2_la-MausFmToBwaConversion.o libmaus2/util/libmaus2_la-TempFileNameGenerator.o libmaus2/util/libmaus2_la-TempFileNameGeneratorState.o libmaus2/util/libmaus2_la-ArgInfo.o libmaus2/util/libmaus2_la-Array832.o libmaus2/util/libmaus2_la-Array864.o libmaus2/util/libmaus2_la-BitList.o libmaus2/util/libmaus2_la-VarBitList.o libmaus2/util/libmaus2_la-Concat.o libmaus2/util/libmaus2_la-ConcatRequest.o libmaus2/util/libmaus2_la-ConsoleColor.o libmaus2/util/libmaus2_la-Demangle.o libmaus2/util/libmaus2_la-DynamicLoading.o libmaus2/util/libmaus2_la-ForkProcess.o libmaus2/util/libmaus2_la-LSFSim.o libmaus2/util/libmaus2_la-ForkProcessLSFSim.o libmaus2/util/libmaus2_la-GetFileSize.o libmaus2/util/libmaus2_la-Histogram.o libmaus2/util/libmaus2_la-HistogramSet.o libmaus2/util/libmaus2_la-IncreasingList.o libmaus2/util/libmaus2_la-IntervalTree.o libmaus2/util/libmaus2_la-GenericIntervalTree.o libmaus2/util/libmaus2_la-LogPipe.o libmaus2/util/libmaus2_la-LogPipeMultiplex.o libmaus2/util/libmaus2_la-LogPipeMultiplexGeneric.o libmaus2/util/libmaus2_la-LookupIntervalTree.o libmaus2/digest/libmaus2_la-md5_interface.o libmaus2/util/libmaus2_la-MemLimit.o libmaus2/util/libmaus2_la-MemUsage.o libmaus2/util/libmaus2_la-NearestNeighbourDictionary.o libmaus2/util/libmaus2_la-NegativeDifferenceArray32.o libmaus2/util/libmaus2_la-NegativeDifferenceArray64.o libmaus2/util/libmaus2_la-nstat.o libmaus2/util/libmaus2_la-PositiveDifferenceArray32.o libmaus2/util/libmaus2_la-PositiveDifferenceArray64.o libmaus2/util/libmaus2_la-PosixExecute.o libmaus2/util/libmaus2_la-PosixFileDescriptor.o libmaus2/util/libmaus2_la-PosixInputFile.o libmaus2/util/libmaus2_la-SaturatingCounter.o libmaus2/util/libmaus2_la-StringSerialisation.o libmaus2/util/libmaus2_la-SuccinctBorderArray.o libmaus2/util/libmaus2_la-Terminal.o libmaus2/util/libmaus2_la-OctetString.o libmaus2/util/libmaus2_la-Utf8String.o libmaus2/util/libmaus2_la-Utf8BlockIndexDecoder.o libmaus2/util/libmaus2_la-Utf8BlockIndex.o libmaus2/util/libmaus2_la-Utf8DecoderBuffer.o libmaus2/util/libmaus2_la-Utf8DecoderWrapper.o libmaus2/suffixtree/libmaus2_la-CompressedSuffixTree.o libmaus2/bambam/libmaus2_la-AlignmentValidity.o libmaus2/bambam/libmaus2_la-BamFlagBase.o libmaus2/bambam/libmaus2_la-ReadGroup.o libmaus2/bambam/libmaus2_la-DuplicationMetrics.o libmaus2/bambam/libmaus2_la-BamDefaultAdapters.o libmaus2/bambam/libmaus2_la-BamRange.o libmaus2/graph/libmaus2_la-GraphEdge.o libmaus2/bambam/libmaus2_la-BamIndexBinChunk.o libmaus2/bambam/libmaus2_la-BamIndexLinearChunk.o libmaus2/huffman/libmaus2_la-HuffmanTree.o libmaus2/bambam/libmaus2_la-BamAlignmentDecoderInfo.o libmaus2/lz/libmaus2_la-Lz4Base.o libmaus2/lz/libmaus2_la-Lz4Compress.o libmaus2/lz/libmaus2_la-Lz4DecoderBuffer.o libmaus2/lz/libmaus2_la-lz4.o libmaus2/fm/libmaus2_la-BidirectionalIndexInterval.o libmaus2/fm/libmaus2_la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/libmaus2_la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/libmaus2_la-FastALineParserLineInfo.o libmaus2/fastx/libmaus2_la-FastAMatchTable.o libmaus2/lcs/libmaus2_la-EditDistanceResult.o libmaus2/fastx/libmaus2_la-FastABgzfIndexEntry.o libmaus2/fastx/libmaus2_la-FastABgzfIndex.o libmaus2/parallel/libmaus2_la-ThreadWorkPackage.o libmaus2/parallel/libmaus2_la-SimpleThreadWorkPackage.o libmaus2/lz/libmaus2_la-RAZFIndex.o libmaus2/fastx/libmaus2_la-FastAIndexEntry.o libmaus2/fastx/libmaus2_la-FastAIndex.o libmaus2/network/libmaus2_la-HttpAbsoluteUrl.o libmaus2/hashing/libmaus2_la-Crc32.o libmaus2/hashing/libmaus2_la-MurmurHash3.o libmaus2/lz/libmaus2_la-IGzipDeflate.o libmaus2/lcs/libmaus2_la-LocalBaseConstants.o libmaus2/lcs/libmaus2_la-LocalEditDistanceResult.o libmaus2/bambam/libmaus2_la-BamHeaderParserStateBase.o libmaus2/bambam/libmaus2_la-GeneFlatFile.o libmaus2/bambam/libmaus2_la-GeneFlatFileEntry.o libmaus2/trie/libmaus2_la-SimpleTrie.o libmaus2/network/libmaus2_la-GnuTLSInit.o libmaus2/network/libmaus2_la-GnuTLSSocket.o libmaus2/bambam/libmaus2_la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/libmaus2_la-FactorMatchInfo.o libmaus2/alignment/libmaus2_la-KmerInfo.o libmaus2/bambam/libmaus2_la-SamInfoBase.o libmaus2/digest/libmaus2_la-SHA1.o libmaus2/digest/libmaus2_la-SHA2_224.o libmaus2/digest/libmaus2_la-SHA2_256.o libmaus2/digest/libmaus2_la-SHA2_384.o libmaus2/digest/libmaus2_la-SHA2_512.o libmaus2/digest/libmaus2_la-CRC32.o libmaus2/digest/libmaus2_la-CRC32C_Core.o libmaus2/digest/libmaus2_la-CRC32C.o libmaus2/digest/libmaus2_la-CRC32_Core.o libmaus2/bambam/parallel/libmaus2_la-ValidationFragment.o libmaus2/bambam/parallel/libmaus2_la-GenericInputControlStreamInfo.o libmaus2/fastx/libmaus2_la-NameInfoBase.o libmaus2/bambam/parallel/libmaus2_la-RefIdInterval.o libmaus2/fastx/libmaus2_la-RefPathToken.o libmaus2/fastx/libmaus2_la-RefPathTokenVector.o libmaus2/dazzler/db/libmaus2_la-FastaInfo.o libmaus2/dazzler/db/libmaus2_la-IndexBase.o libmaus2/dazzler/db/libmaus2_la-DatabaseFile.o libmaus2/dazzler/db/libmaus2_la-Read.o libmaus2/dazzler/align/libmaus2_la-Path.o libmaus2/dazzler/align/libmaus2_la-Overlap.o libmaus2/lcs/libmaus2_la-AlignmentStatistics.o libmaus2/fastx/libmaus2_la-SingleWordDNABitBuffer.o libmaus2/util/libmaus2_la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/libmaus2_la-AlignerFactory.o libmaus2/lcs/libmaus2_la-BandedAlignerFactory.o libmaus2/aio/libmaus2_la-InputStreamInstance.o libmaus2/lcs/libmaus2_la-DalignerNP.o libmaus2/aio/libmaus2_la-OutputStreamInstance.o libmaus2/aio/libmaus2_la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/libmaus2_la-TraceBlock.o libmaus2/dazzler/align/libmaus2_la-ApproximateRun.o libmaus2/suffixsort/libmaus2_la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/libmaus2_la-OverlapMeta.o libmaus2/lcs/libmaus2_la-DalignerLocalAlignment.o libmaus2/dazzler/align/libmaus2_la-Tandem.o libmaus2/dazzler/align/libmaus2_la-TandemVector.o libmaus2/math/libmaus2_la-GmpInteger.o libmaus2/math/libmaus2_la-GmpFloat.o libmaus2/dazzler/align/libmaus2_la-TracePoint.o libmaus2/lz/libmaus2_la-XzDecoder.o libmaus2/util/libmaus2_la-ArgParser.o libmaus2/lcs/libmaus2_la-FragmentEnvelopeYScore.o libmaus2/lcs/libmaus2_la-FragmentEnvelopeFragment.o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataSequence.o libmaus2/fastx/libmaus2_la-DNAIndexMetaData.o libmaus2/bambam/libmaus2_la-PileVectorElement.o libmaus2/digest/libmaus2_la-SHA3_256.o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBand.o libmaus2/fastx/libmaus2_la-DNAIndexMetaDataBigBandBiDir.o libmaus2/lcs/libmaus2_la-EnvelopeFragment.o libmaus2/rank/libmaus2_la-DNARankBiDirRange.o libmaus2/lcs/libmaus2_la-NNPTraceElement.o libmaus2/lcs/libmaus2_la-NNPTraceContainer.o libmaus2/lcs/libmaus2_la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/libmaus2_la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtComputeSSA.o libmaus2/fastx/libmaus2_la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtMergeSortResult.o libmaus2/util/libmaus2_la-HugePages.o libmaus2/lz/libmaus2_la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/libmaus2_la-BwtSelectSSA.o libmaus2/aio/libmaus2_la-FileRemoval.o libmaus2/rank/libmaus2_la-DNARankMEM.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libmaus2.a libtool: link: ( cd ".libs" && rm -f "libmaus2.la" && ln -s "../libmaus2.la" "libmaus2.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbitbtree test/testbitbtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbtree test/testbtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testAIO test/testAIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBitIO test/testBitIO.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testBitIO test/testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbitbtree test/testbitbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testAIO test/testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbtree test/testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBWTDyn test/testBWTDyn.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testBWTHufDyn test/testBWTHufDyn.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testDivSufSort test/testDivSufSort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testDNABitWords test/testDNABitWords.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testBWTDyn test/testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testBWTHufDyn test/testBWTHufDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testDivSufSort test/testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testDNABitWords test/testDNABitWords.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testFastRead test/testFastRead.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testFork test/testFork.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testHuffman test/testHuffman.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testIsa test/testIsa.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testFastRead test/testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testFork test/testFork.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testHuffman test/testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testIsa test/testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlz test/testlz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testkmp test/testkmp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testOS test/testOS.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlz test/testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testkmp test/testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testRank test/testRank-testRank.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testOS test/testOS.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testToWaveletTreeBits test/testToWaveletTreeBits.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testWaveletExternal test/testWaveletExternal.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testTrie test/testTrie.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testWaveletExternal test/testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testConsensus test/testConsensus.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testTrie test/testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread 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-fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlsfclientfw test/testlsfclientfw.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlsfclient test/testlsfclient.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlsflist test/testlsflist-testlsflist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la libmaus2lsf.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdl test/testdl.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlsfclientfw test/testlsfclientfw.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdifenc test/testdifenc.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdl test/testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlsflist test/testlsflist-testlsflist.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so ./.libs/libmaus2lsf.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbwtmergeinternal test/testbwtmergeinternal.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastarewrite test/testfastarewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdifenc test/testdifenc.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastarecode test/testfastarecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbwtmergeinternal test/testbwtmergeinternal.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastarewrite test/testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastarecode test/testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -ldl -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamrange test/testbamrange.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o -ldl ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamrange test/testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcompact test/testcompact.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbytetocompact test/testbytetocompact.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2_irods.a libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testpacdecode test/testpacdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcompact test/testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbytetocompact test/testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testscramtosam test/testscramtosam-testscramtosam.o libmaus2_irods.a ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testpacdecode test/testpacdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testutf8split test/testutf8split.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcirchash test/testcirchash-testcirchash.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testrmmtree test/testrmmtree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testutf8split test/testutf8split.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcst test/testcst.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcirchash test/testcirchash-testcirchash.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testrmmtree test/testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcst test/testcst.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamcmp test/testbamcmp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamdif test/testbamdif.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testqreorder test/testqreorder.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfqbgzf test/testfqbgzf.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamcmp test/testbamcmp.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamdif test/testbamdif.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testqreorder test/testqreorder.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfqbgzf test/testfqbgzf.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testoverlap test/testoverlap.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testcompactfastrandom test/testcompactfastrandom.o libmaus2.la libmaus2_simd_align_128.la 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./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcompactfastrandom test/testcompactfastrandom.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamrewrite test/testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamindex test/testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastqstream test/testfastqstream.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsort test/testsort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu 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-std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testexternalsort test/testexternalsort.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammergecoordinate test/testbammergecoordinate.o libmaus2.la libmaus2_simd_align_128.la 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-pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammergequeryname test/testbammergequeryname.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammergecoordinate test/testbammergecoordinate.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammergecollate test/testbammergecollate-testbammergecollate.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbamcat test/testbamcat.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammergequeryname test/testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbamcat test/testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testautoarray2d test/testautoarray2d.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testhist test/testhist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastaparse test/testfastaparse.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testautoarray2d test/testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testhist test/testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testvalidatebamindex test/testvalidatebamindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testeditdistance test/testeditdistance.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastaparse test/testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testthreadpool test/testthreadpool.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testvalidatebamindex test/testvalidatebamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testeditdistance test/testeditdistance.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimplethreadpool test/testsimplethreadpool.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testthreadpool test/testthreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testthreadpoolbamdecode test/testthreadpoolbamdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimplethreadpool test/testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgaparraybyte test/testgaparraybyte.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testthreadpoolbamdecode test/testthreadpoolbamdecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 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-pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfaindex test/testfaindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastablockrecode test/testfastablockrecode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testhttp test/testhttp-testhttp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testftp test/testftp-testftp.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testrlhist test/testrlhist.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testnumcpus test/testnumcpus.o libmaus2.la libmaus2_simd_align_128.la 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-Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testnumcpus test/testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testrlhist test/testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlinuxstreamingwrite test/testlinuxstreamingwrite-testlinuxstreamingwrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdiag test/testdiag-testdiag.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlinuxstreamingwrite test/testlinuxstreamingwrite-testlinuxstreamingwrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testurlinputstream test/testurlinputstream-testurlinputstream.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgeneflatfile test/testgeneflatfile-testgeneflatfile.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsimpletrie test/testsimpletrie.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testurlinputstream test/testurlinputstream-testurlinputstream.o -lgnutls ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -lgnutls -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgnutls test/testgnutls-testgnutls.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlru test/testlru.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsimpletrie test/testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlru test/testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgnutls test/testgnutls-testgnutls.o -lgnutls ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbytecnt test/testbytecnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbytecnt test/testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testtopologicalsorting test/testtopologicalsorting.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/teststronglyconnectedcomponents test/teststronglyconnectedcomponents.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testtopologicalsorting test/testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlinebuffer test/testlinebuffer-testlinebuffer.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_simd_align_128.la 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-O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmd5 test/testmd5-testmd5.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testunsignedinteger test/testunsignedinteger-testunsignedinteger.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsha test/testsha-testsha.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lnettle libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsinglefileserver test/testsinglefileserver-testsinglefileserver.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsha test/testsha-testsha.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lnettle libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsinglefileserver test/testsinglefileserver-testsinglefileserver.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbammateerase test/testbammateerase.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lsnappy -ldl libmaus2seqchksumsfactory.a libmaus2digests.a libmaus2digests_sse4.a -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbammateerase test/testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmapperm test/testmapperm-testmapperm.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastqtobam test/testfastqtobam-testfastqtobam.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsamrecoding test/testsamrecoding-testsamrecoding.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lsnappy -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastqtobam test/testfastqtobam-testfastqtobam.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsamrecoding test/testsamrecoding-testsamrecoding.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzlerdb test/testdazzlerdb-testdazzlerdb.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testnd test/testnd-testnd.o libmaus2.la libmaus2_simd_align_128.la 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-Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastashred test/testfastashred-testfastashred.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastashred test/testfastashred-testfastashred.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testalignerspeed test/testalignerspeed-testalignerspeed.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastasingleline test/testfastasingleline-testfastasingleline.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testalignerspeed test/testalignerspeed-testalignerspeed.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastasingleline test/testfastasingleline-testfastasingleline.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzleralignmentrewrite test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testxz test/testxz-testxz.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdazzlerindex test/testdazzlerindex-testdazzlerindex.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testargparser test/testargparser-testargparser.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdazzlerindex test/testdazzlerindex-testdazzlerindex.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testxz test/testxz-testxz.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testargparser test/testargparser-testargparser.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfragmentenvelope test/testfragmentenvelope-testfragmentenvelope.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testdnarank test/testdnarank-testdnarank.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testlowbits test/testlowbits-testlowbits.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfastaexplode test/testfastaexplode-testfastaexplode.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfragmentenvelope test/testfragmentenvelope-testfragmentenvelope.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testdnarank test/testdnarank-testdnarank.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testlowbits test/testlowbits-testlowbits.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfastaexplode test/testfastaexplode-testfastaexplode.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testfaextract test/testfaextract-testfaextract.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testmurmur3 test/testmurmur3-testmurmur3.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testpairalign test/testpairalign-testpairalign.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsplaytree test/testsplaytree-testsplaytree.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testfaextract test/testfaextract-testfaextract.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testmurmur3 test/testmurmur3-testmurmur3.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testpairalign test/testpairalign-testpairalign.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsplaytree test/testsplaytree-testsplaytree.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testhugepages test/testhugepages-testhugepages.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbwtconstruction test/testbwtconstruction-testbwtconstruction.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testhugepages test/testhugepages-testhugepages.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testarrayinput test/testarrayinput-testarrayinput.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -pthread -std=gnu++0x -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -rdynamic -o .libs/testgammapd test/testgammapd-testgammapd.o ./.libs/libmaus2.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -ldl -lrt -L/usr/lib/x86_64-linux-gnu -lz -llzma -fopenmp -pthread make[3]: Leaving directory '/«PKGBUILDDIR»/src' Making all in test make[3]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -O--parallel make -j4 check make[1]: Entering directory '/«PKGBUILDDIR»' Making check in src make[2]: Entering directory '/«PKGBUILDDIR»/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making check in test make[2]: Entering directory '/«PKGBUILDDIR»/test' make check-TESTS make[3]: Entering directory '/«PKGBUILDDIR»/test' make[4]: Entering directory '/«PKGBUILDDIR»/test' PASS: testargparser.sh PASS: testAIO.sh ============================================================================ Testsuite summary for libmaus2 2.0.195 ============================================================================ # TOTAL: 2 # PASS: 2 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/«PKGBUILDDIR»/test' make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autoreconf --parallel dh_testroot -O--parallel dh_prep -O--parallel rm -f debian/libmaus2.substvars rm -f debian/libmaus2.*.debhelper rm -rf debian/libmaus2/ rm -f debian/libmaus2-dev.substvars rm -f debian/libmaus2-dev.*.debhelper rm -rf debian/libmaus2-dev/ dh_auto_install -O--parallel install -d debian/libmaus2 install -d debian/libmaus2-dev make -j4 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Entering directory '/«PKGBUILDDIR»/src' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2.la libmaus2lsf.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' /usr/bin/install -c -m 644 libmaus2digests.a libmaus2digests_sse4.a libmaus2_irods.a libmaus2seqchksumsfactory.a '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2_consensus_mod.la libmaus2_scram_mod.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195' /usr/bin/install -c -m 644 libmaus2/LibMausConfig.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/aio' libtool: install: /usr/bin/install -c .libs/libmaus2.so.2.0.195 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 libtool: install: /usr/bin/install -c .libs/libmaus2_consensus_mod.so /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.so /usr/bin/install -c -m 644 libmaus2/aio/AsynchronousBufferReader.hpp libmaus2/aio/AsynchronousWriter.hpp libmaus2/aio/AsynchronousReader.hpp libmaus2/aio/OutputBuffer8.hpp libmaus2/aio/OutputBuffer84Bit.hpp libmaus2/aio/TerminatedOutputBuffer84Bit.hpp libmaus2/aio/OutputBuffer.hpp libmaus2/aio/OutputFile8Array.hpp libmaus2/aio/GenericInput.hpp libmaus2/aio/MetaOutputFile8Array.hpp libmaus2/aio/SynchronousOutputFile8Array.hpp libmaus2/aio/MetaOutputBuffer8.hpp libmaus2/aio/SynchronousOutputBuffer8.hpp libmaus2/aio/BlockSynchronousOutputBuffer8.hpp libmaus2/aio/GenericOutput.hpp libmaus2/aio/MemInBuffer.hpp libmaus2/aio/MemOutBuffer.hpp libmaus2/aio/BufferedOutput.hpp libmaus2/aio/FileFragment.hpp libmaus2/aio/AsynchronousFastReaderBase.hpp libmaus2/aio/SynchronousFastReaderBase.hpp libmaus2/aio/LimitedGenericInput.hpp libmaus2/aio/SynchronousGenericInput.hpp libmaus2/aio/LimitedSynchronousGenericInput.hpp libmaus2/aio/ReorderConcatGenericInput.hpp libmaus2/aio/GetLength.hpp libmaus2/aio/CompactDecoder4.hpp libmaus2/aio/CompactEncoder4.hpp libmaus2/aio/WriteCompactArray.hpp libmaus2/aio/SynchronousGenericOutput.hpp libmaus2/aio/SynchronousOutputBuffer8Posix.hpp libmaus2/aio/SynchronousGenericOutputPosix.hpp libmaus2/aio/PutOutputIterator.hpp libmaus2/aio/CheckedInputStream.hpp libmaus2/aio/CheckedOutputStream.hpp libmaus2/aio/CircularBuffer.hpp libmaus2/aio/CircularWrapper.hpp libmaus2/aio/IStreamWrapper.hpp libmaus2/aio/CheckedInputStreamAtOffset.hpp libmaus2/aio/Buffer.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/SingleFileFragmentMerge.hpp libmaus2/aio/CheckedInputOutputStream.hpp libmaus2/aio/PosixFdInput.hpp libmaus2/aio/PosixFdInputWrapper.hpp libmaus2/aio/PosixFdInputStream.hpp libmaus2/aio/PosixFdOutputStreamBuffer.hpp libmaus2/aio/PosixFdOutputStream.hpp libmaus2/aio/PosixFdInputStreamBuffer.hpp libmaus2/aio/LinuxStreamingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LinuxStreamingPosixFdOutputStream.hpp libmaus2/aio/IsKnownLocalFileSystem.hpp libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp libmaus2/aio/LineSplittingPosixFdOutputStream.hpp libmaus2/aio/NamedTemporaryFile.hpp libmaus2/aio/NamedTemporaryFileTypeInfo.hpp libmaus2/aio/NamedTemporaryFileAllocator.hpp libmaus2/aio/InputStreamWrapper.hpp libmaus2/aio/InputStream.hpp libmaus2/aio/InputStreamFactory.hpp libmaus2/aio/PosixFdInputStreamFactory.hpp libmaus2/aio/InputStreamFactoryContainer.hpp libmaus2/aio/OutputStreamWrapper.hpp libmaus2/aio/OutputStream.hpp libmaus2/aio/OutputStreamFactory.hpp libmaus2/aio/OutputStreamFactoryContainer.hpp libmaus2/aio/PosixFdOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamFactoryContainer.hpp libmaus2/aio/InputOutputStreamFactory.hpp libmaus2/aio/InputOutputStream.hpp libmaus2/aio/StdInputOutputStreamFactory.hpp libmaus2/aio/InputOutputStreamWrapper.hpp libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp libmaus2/aio/PosixFdInputOutputStream.hpp libmaus2/aio/PosixFdInputOutputStreamFactory.hpp libmaus2/aio/MemoryFileAdapter.hpp libmaus2/aio/MemoryFileContainer.hpp libmaus2/aio/MemoryFile.hpp libmaus2/aio/MemoryInputOutputStreamBuffer.hpp libmaus2/aio/MemoryInputOutputStreamFactory.hpp libmaus2/aio/MemoryInputOutputStream.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/aio' /usr/bin/install -c -m 644 libmaus2/aio/MemoryInputStreamBuffer.hpp libmaus2/aio/MemoryInputStreamFactory.hpp libmaus2/aio/MemoryInputStream.hpp libmaus2/aio/MemoryOutputStreamBuffer.hpp libmaus2/aio/MemoryOutputStreamFactory.hpp libmaus2/aio/MemoryOutputStream.hpp libmaus2/aio/FileRemoval.hpp libmaus2/aio/InputStreamPointerWrapper.hpp libmaus2/aio/InputStreamInstance.hpp libmaus2/aio/InputStreamInstanceAtOffset.hpp libmaus2/aio/OutputStreamPointerWrapper.hpp libmaus2/aio/OutputStreamInstance.hpp libmaus2/aio/ConcatInputStreamBuffer.hpp libmaus2/aio/ConcatInputStream.hpp libmaus2/aio/SplitWriter.hpp libmaus2/aio/ArrayInputStreamBuffer.hpp libmaus2/aio/ArrayInputStream.hpp libmaus2/aio/ArrayFile.hpp libmaus2/aio/StreamLock.hpp libmaus2/aio/ArrayFileContainer.hpp libmaus2/aio/ArrayInputStreamFactory.hpp libmaus2/aio/PairFileDecoder.hpp libmaus2/aio/SizeMonitorThread.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/aio' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/alignment' libtool: install: /usr/bin/install -c .libs/libmaus2_consensus_mod.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.la /usr/bin/install -c -m 644 libmaus2/alignment/KmerTuple.hpp libmaus2/alignment/FactorMatchInfo.hpp libmaus2/alignment/KmerInfo.hpp libmaus2/alignment/FactorMatchInfoPosComparator.hpp libmaus2/alignment/FMIIntervalComparator.hpp libmaus2/alignment/BamLineInfo.hpp libmaus2/alignment/SimpleLocalAligner.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/alignment' libtool: install: /usr/bin/install -c .libs/libmaus2_scram_mod.so /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.so libtool: install: /usr/bin/install -c .libs/libmaus2_scram_mod.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.la libtool: install: warning: remember to run `libtool --finish /usr/lib/x86_64-linux-gnu/libmaus2/2.0.195' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/autoarray/' /usr/bin/install -c -m 644 libmaus2/autoarray/AutoArray.hpp libmaus2/autoarray/AutoArray2d.hpp libmaus2/autoarray/AutoArrayMultiMap.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/autoarray/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/DecoderBase.hpp libmaus2/bambam/Chromosome.hpp libmaus2/bambam/BamAlignmentDecoderBase.hpp libmaus2/bambam/BamFormatAuxiliary.hpp libmaus2/bambam/EncoderBase.hpp libmaus2/bambam/BamHeader.hpp libmaus2/bambam/BamAlignment.hpp libmaus2/bambam/BamDecoder.hpp libmaus2/bambam/BamAlignmentComparator.hpp libmaus2/bambam/MergeQueueElement.hpp libmaus2/bambam/CollatingBamDecoder.hpp libmaus2/bambam/CigarOperation.hpp libmaus2/bambam/CigarStringParser.hpp libmaus2/bambam/BamSeqEncodeTable.hpp libmaus2/bambam/BamAlignmentEncoderBase.hpp libmaus2/bambam/BamFlagBase.hpp libmaus2/bambam/BamWriter.hpp libmaus2/bambam/HeaderLine.hpp libmaus2/bambam/ProgramHeaderLineSet.hpp libmaus2/bambam/ReadEnds.hpp libmaus2/bambam/ReadEndsHeapPairComparator.hpp libmaus2/bambam/CompactReadEndsBase.hpp libmaus2/bambam/CompactReadEndsComparator.hpp libmaus2/bambam/SortedFragDecoder.hpp libmaus2/bambam/ReadEndsContainer.hpp libmaus2/bambam/DuplicationMetrics.hpp libmaus2/bambam/OpticalComparator.hpp libmaus2/bambam/BamAlignmentHeapComparator.hpp libmaus2/bambam/BamAlignmentNameComparator.hpp libmaus2/bambam/BamAlignmentPosComparator.hpp libmaus2/bambam/BamEntryContainer.hpp libmaus2/bambam/Scram.h libmaus2/bambam/AlignmentValidity.hpp libmaus2/bambam/ScramDecoder.hpp libmaus2/bambam/ScramEncoder.hpp libmaus2/bambam/SnappyAlignmentMergeInput.hpp libmaus2/bambam/BamAlignmentPrinter.hpp libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp libmaus2/bambam/CircularHashCollatingBamDecoder.hpp libmaus2/bambam/BamToFastqOutputFileSet.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentDecoder.hpp libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp libmaus2/bambam/ReadGroup.hpp libmaus2/bambam/BamAuxFilterVector.hpp libmaus2/bambam/BamDefaultAdapters.hpp libmaus2/bambam/AdapterOffsetStrand.hpp libmaus2/bambam/AdapterFilter.hpp libmaus2/bambam/BamIndexBin.hpp libmaus2/bambam/BamIndexLinear.hpp libmaus2/bambam/BamIndexRef.hpp libmaus2/bambam/BamIndex.hpp libmaus2/bambam/BamRange.hpp libmaus2/bambam/BamRangeParser.hpp libmaus2/bambam/BamRangeDecoder.hpp libmaus2/bambam/BamParallelRewrite.hpp libmaus2/bambam/BamAlignmentExpungeCallback.hpp libmaus2/bambam/StrCmpNum.hpp libmaus2/bambam/BamCatHeader.hpp libmaus2/bambam/BamCat.hpp libmaus2/bambam/BamMergeCoordinate.hpp libmaus2/bambam/BamMergeTemplate.hpp libmaus2/bambam/BamMergeQueryName.hpp libmaus2/bambam/BamIndexBinChunk.hpp libmaus2/bambam/BamIndexLinearChunk.hpp libmaus2/bambam/BamIndexGenerator.hpp libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp libmaus2/bambam/BamAlignmentInputCallbackBam.hpp libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp libmaus2/bambam/BamHeaderUpdate.hpp libmaus2/bambam/DupSetCallback.hpp libmaus2/bambam/DupSetCallbackSet.hpp libmaus2/bambam/DupSetCallbackStream.hpp libmaus2/bambam/DupSetCallbackVector.hpp libmaus2/bambam/BamAlignmentListNode.hpp libmaus2/bambam/BamAlignmentPairListNode.hpp libmaus2/bambam/ReadEndsListNode.hpp libmaus2/bambam/BamAlignmentFreeList.hpp libmaus2/bambam/BamAlignmentPairFreeList.hpp libmaus2/bambam/ReadEndsFreeList.hpp libmaus2/bambam/DupMarkBase.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/' libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2.so.2.0.195 libmaus2.so.2 || { rm -f libmaus2.so.2 && ln -s libmaus2.so.2.0.195 libmaus2.so.2; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2.so.2.0.195 libmaus2.so || { rm -f libmaus2.so && ln -s libmaus2.so.2.0.195 libmaus2.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.la libtool: install: /usr/bin/install -c .libs/libmaus2lsf.so.2.0.195 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2.0.195 libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2lsf.so.2.0.195 libmaus2lsf.so.2 || { rm -f libmaus2lsf.so.2 && ln -s libmaus2lsf.so.2.0.195 libmaus2lsf.so.2; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2lsf.so.2.0.195 libmaus2lsf.so || { rm -f libmaus2lsf.so && ln -s libmaus2lsf.so.2.0.195 libmaus2lsf.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2lsf.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.la ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2digests.a ) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.so.2.0.195 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2digests_sse4.a ) ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2_irods.a ) ( cd '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu' && ranlib libmaus2seqchksumsfactory.a ) /usr/bin/install -c -m 644 libmaus2/bambam/BamAlignmentSnappyInput.hpp libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp libmaus2/bambam/BamBlockWriterBase.hpp libmaus2/bambam/BamBlockWriterBaseFactory.hpp libmaus2/bambam/BamAlignmentDecoderInfo.hpp libmaus2/bambam/BamAlignmentDecoderFactory.hpp libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp libmaus2/bambam/BamIndexMetaInfo.hpp libmaus2/bambam/MdStringComputationContext.hpp libmaus2/bambam/BamAlignmentFilter.hpp libmaus2/bambam/BamAlignmentReadGroupFilter.hpp libmaus2/bambam/MdNmRecalculation.hpp libmaus2/bambam/CramRange.hpp libmaus2/bambam/ChromosomeVectorMerge.hpp libmaus2/bambam/BamHeaderLowMem.hpp libmaus2/bambam/GeneFlatFile.hpp libmaus2/bambam/GeneFlatFileEntry.hpp libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp libmaus2/bambam/BamStreamingMarkDuplicates.hpp libmaus2/bambam/BamHeaderParserStateBase.hpp libmaus2/bambam/BamHeaderParserState.hpp libmaus2/bambam/BamAlignmentReg2Bin.hpp libmaus2/bambam/SamInfoBase.hpp libmaus2/bambam/SamInfo.hpp libmaus2/bambam/SamPrintableTable.hpp libmaus2/bambam/SamZPrintableTable.hpp libmaus2/bambam/SamDecoder.hpp libmaus2/bambam/SamDecoderWrapper.hpp libmaus2/bambam/BamAlignmentFixedSizeData.hpp libmaus2/bambam/BamAuxSortingBufferEntry.hpp libmaus2/bambam/BamAuxSortingBuffer.hpp libmaus2/bambam/ReadEndsContainerBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp libmaus2/bambam/ReadEndsStreamDecoderBase.hpp libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp libmaus2/bambam/ReadEndsStreamDecoder.hpp libmaus2/bambam/ReadEndsBasePointerComparator.hpp libmaus2/bambam/ReadEndsBase.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/' /usr/bin/install -c -m 644 libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp libmaus2/bambam/ScramInputContainer.hpp libmaus2/bambam/SamEncoder.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp libmaus2/bambam/ReadEndsBlockIndexSet.hpp libmaus2/bambam/DupSetCallbackSharedVector.hpp libmaus2/bambam/SamInfoAllocator.hpp libmaus2/bambam/SamInfoTypeInfo.hpp libmaus2/bambam/RgInfo.hpp libmaus2/bambam/SeqChksumPrimeNumbers.hpp libmaus2/bambam/SeqChksumUpdateContext.hpp libmaus2/bambam/ChecksumsInterface.hpp libmaus2/bambam/ChecksumsFactory.hpp libmaus2/bambam/ChecksumsInterfaceAllocator.hpp libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp libmaus2/bambam/StrCmpNumRecode.hpp libmaus2/bambam/PileVectorElement.hpp libmaus2/bambam/CigarStringReader.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/AlignmentBuffer.hpp libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp libmaus2/bambam/parallel/CompressBufferAllocator.hpp libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp libmaus2/bambam/parallel/CompressBuffer.hpp libmaus2/bambam/parallel/CompressionPendingElement.hpp libmaus2/bambam/parallel/ControlInputInfo.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlock.hpp libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/DecompressedPendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp libmaus2/bambam/parallel/InputBlockAllocator.hpp libmaus2/bambam/parallel/InputBlock.hpp libmaus2/bambam/parallel/InputBlockReturnInterface.hpp libmaus2/bambam/parallel/InputBlockTypeInfo.hpp libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/InputBlockWorkPackage.hpp libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp libmaus2/bambam/parallel/ParseInfo.hpp libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp libmaus2/bambam/parallel/PushBackSpace.hpp libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp libmaus2/bambam/parallel/RequeReadInterface.hpp libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp libmaus2/bambam/parallel/SortControl.hpp libmaus2/bambam/parallel/SortFinishedInterface.hpp libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp libmaus2/bambam/parallel/ValidationFragment.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp libmaus2/bambam/parallel/WritePendingObject.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/MemInputBlock.hpp libmaus2/bambam/parallel/GenericInputBamParseObject.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBase.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputBlock.hpp libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp libmaus2/bambam/parallel/GenericInputHeapComparator.hpp libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp libmaus2/bambam/parallel/GenericInputSingleData.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp libmaus2/bambam/parallel/SamParsePending.hpp libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp libmaus2/bambam/parallel/SamParseWorkPackage.hpp libmaus2/bambam/parallel/BlockSortControlBase.hpp libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockSortControl.hpp libmaus2/bambam/parallel/BlockMergeControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp libmaus2/bambam/parallel/FastQInputDescBase.hpp libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp libmaus2/bambam/parallel/FastQInputDesc.hpp libmaus2/bambam/parallel/FastqInputPackage.hpp libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp libmaus2/bambam/parallel/FastqParsePackage.hpp libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp libmaus2/bambam/parallel/FastqToBamControl.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /usr/bin/install -c -m 644 libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/CramInterface.h libmaus2/bambam/parallel/CramOutputBlock.hpp libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp libmaus2/bambam/parallel/SamEncoderObject.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp libmaus2/bambam/parallel/CramPassPointerObject.hpp libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp libmaus2/bambam/parallel/ScramCramEncoding.hpp libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp libmaus2/bambam/parallel/CramEncodingSupportData.hpp libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp libmaus2/bambam/parallel/RefIdInterval.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bambam/parallel/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bitbtree' /usr/bin/install -c -m 644 libmaus2/bitbtree/bitbtree.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bitbtree' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bitio' /usr/bin/install -c -m 644 libmaus2/bitio/BitIO.hpp libmaus2/bitio/BitIOOutput.hpp libmaus2/bitio/CompactArray.hpp libmaus2/bitio/CompactArrayBase.hpp libmaus2/bitio/OutputBuffer.hpp libmaus2/bitio/BitIOInput.hpp libmaus2/bitio/getBits.hpp libmaus2/bitio/ReverseTable.hpp libmaus2/bitio/CompactQueue.hpp libmaus2/bitio/putBits.hpp libmaus2/bitio/SwapWordBitBlock.hpp libmaus2/bitio/swapBitBlocksByReversal.hpp libmaus2/bitio/putBit.hpp libmaus2/bitio/getBit.hpp libmaus2/bitio/readElias.hpp libmaus2/bitio/BitWriter.hpp libmaus2/bitio/CheckedBitWriter.hpp libmaus2/bitio/FastWriteBitWriter.hpp libmaus2/bitio/BitVector.hpp libmaus2/bitio/SignedCompactArray.hpp libmaus2/bitio/BufferIterator.hpp libmaus2/bitio/BitVectorConcat.hpp libmaus2/bitio/CompactSparseArray.hpp libmaus2/bitio/CompactOffsetArray.hpp libmaus2/bitio/CompactOffsetOneArray.hpp libmaus2/bitio/ArrayDecode.hpp libmaus2/bitio/BitStreamFileDecoder.hpp libmaus2/bitio/Clz.hpp libmaus2/bitio/CompactDecoderBuffer.hpp libmaus2/bitio/Ctz.hpp libmaus2/bitio/CompactArrayWriter.hpp libmaus2/bitio/CompactArrayWriterFile.hpp libmaus2/bitio/PacDecoderBuffer.hpp libmaus2/bitio/MarkerFastWriteBitWriter.hpp libmaus2/bitio/BitVectorInput.hpp libmaus2/bitio/BitVectorOutput.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bitio' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bp' /usr/bin/install -c -m 644 libmaus2/bp/BalancedParenthesesBase.hpp libmaus2/bp/BalancedParentheses.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/bp' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/btree' /usr/bin/install -c -m 644 libmaus2/btree/btree.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/btree' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/clustering' /usr/bin/install -c -m 644 libmaus2/clustering/HashCreation.hpp libmaus2/clustering/HashCreationBase.hpp libmaus2/clustering/ProduceEdgeRequest.hpp libmaus2/clustering/KmerBase.hpp libmaus2/clustering/KMeans.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/clustering' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/consensus/' /usr/bin/install -c -m 644 libmaus2/consensus/Consensus.hpp libmaus2/consensus/ScoringMatrix.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/consensus/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/cumfreq' /usr/bin/install -c -m 644 libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp libmaus2/cumfreq/SlowCumFreq.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/cumfreq' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/dazzler/align' /usr/bin/install -c -m 644 libmaus2/dazzler/align/AlignmentFile.hpp libmaus2/dazzler/align/Path.hpp libmaus2/dazzler/align/Overlap.hpp libmaus2/dazzler/align/TraceBlock.hpp libmaus2/dazzler/align/TraceBlockVectorCache.hpp libmaus2/dazzler/align/ApproximateRun.hpp libmaus2/dazzler/align/ApproximateRunPartContainer.hpp libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp libmaus2/dazzler/align/OverlapHeapComparator.hpp libmaus2/dazzler/align/SortingOverlapBlockInput.hpp libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp libmaus2/dazzler/align/AlignmentSplitWriter.hpp libmaus2/dazzler/align/OverlapMeta.hpp libmaus2/dazzler/align/OverlapIndexerBase.hpp libmaus2/dazzler/align/OverlapIndexer.hpp libmaus2/dazzler/align/AlignmentWriter.hpp libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp libmaus2/dazzler/align/AlignmentFileRegion.hpp libmaus2/dazzler/align/CompactRunPartContainer.hpp libmaus2/dazzler/align/Tandem.hpp libmaus2/dazzler/align/TandemVector.hpp libmaus2/dazzler/align/TandemVectorPartContainer.hpp libmaus2/dazzler/align/TracePoint.hpp libmaus2/dazzler/align/OverlapParser.hpp libmaus2/dazzler/align/OverlapData.hpp libmaus2/dazzler/align/SimpleOverlapParser.hpp libmaus2/dazzler/align/LASToBamConverterBase.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/dazzler/align' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/dazzler/db' /usr/bin/install -c -m 644 libmaus2/dazzler/db/IndexBase.hpp libmaus2/dazzler/db/FastaInfo.hpp libmaus2/dazzler/db/DatabaseFile.hpp libmaus2/dazzler/db/InputBase.hpp libmaus2/dazzler/db/GetByteCounter.hpp libmaus2/dazzler/db/Read.hpp libmaus2/dazzler/db/OutputBase.hpp libmaus2/dazzler/db/TrackAnnoInterface.hpp libmaus2/dazzler/db/TrackAnno.hpp libmaus2/dazzler/db/Track.hpp libmaus2/dazzler/db/InqualContainer.hpp libmaus2/dazzler/db/PartTrackContainer.hpp libmaus2/dazzler/db/ReadLRUContainer.hpp libmaus2/dazzler/db/SatsContainer.hpp libmaus2/dazzler/db/ReadContainer.hpp libmaus2/dazzler/db/StringTrackWriter.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/dazzler/db' libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.195 libmaus2_simd_align_128.so.2 || { rm -f libmaus2_simd_align_128.so.2 && ln -s libmaus2_simd_align_128.so.2.0.195 libmaus2_simd_align_128.so.2; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.195 libmaus2_simd_align_128.so || { rm -f libmaus2_simd_align_128.so && ln -s libmaus2_simd_align_128.so.2.0.195 libmaus2_simd_align_128.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.la libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.so.2.0.195 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/deleter' /usr/bin/install -c -m 644 libmaus2/deleter/Deleter.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/deleter' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/digest' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/eta' /usr/bin/install -c -m 644 libmaus2/eta/LinearETA.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/eta' /usr/bin/install -c -m 644 libmaus2/digest/DigestBase.hpp libmaus2/digest/SHA1.hpp libmaus2/digest/SHA2_224.hpp libmaus2/digest/SHA2_256.hpp libmaus2/digest/SHA2_384.hpp libmaus2/digest/SHA2_512.hpp libmaus2/digest/CRC32.hpp libmaus2/digest/Digests.hpp libmaus2/digest/Null.hpp libmaus2/digest/SHA2_256_sse4.hpp libmaus2/digest/sha256.h libmaus2/digest/sha512.h libmaus2/digest/SHA2_512_sse4.hpp libmaus2/digest/CRC32C_sse42.hpp libmaus2/digest/CRC32C_Core.hpp libmaus2/digest/CRC32C.hpp libmaus2/digest/CRC32_Core.hpp libmaus2/digest/DigestInterface.hpp libmaus2/digest/DigestFactory.hpp libmaus2/digest/DigestFactoryContainer.hpp libmaus2/digest/DigestFactory_SHA2_ASM.hpp libmaus2/digest/DigestFactory_CRC32C_SSE42.hpp libmaus2/digest/DigestFactoryInterface.hpp libmaus2/digest/md5.hpp libmaus2/digest/md5.h libmaus2/digest/MurmurHash3_x64_128.hpp libmaus2/digest/SHA3_256.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/digest' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/exception' /usr/bin/install -c -m 644 libmaus2/exception/LibMausException.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/exception' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/fastx/CharTermTable.hpp libmaus2/fastx/SpaceTable.hpp libmaus2/fastx/CharBuffer.hpp libmaus2/fastx/Pattern.hpp libmaus2/fastx/acgtnMap.hpp libmaus2/fastx/FastAReader.hpp libmaus2/fastx/PatternBlock.hpp libmaus2/fastx/FastIDBlock.hpp libmaus2/fastx/FastQReader.hpp libmaus2/fastx/FASTQEntry.hpp libmaus2/fastx/isFastQ.hpp libmaus2/fastx/MultiWordDNABitBuffer.hpp libmaus2/fastx/SingleWordDNABitBuffer.hpp libmaus2/fastx/FastInterval.hpp libmaus2/fastx/FastAReaderSplit.hpp libmaus2/fastx/FastQReaderSplit.hpp libmaus2/fastx/ConcatWriter.hpp libmaus2/fastx/FastFirstToLastReverseAdapter.hpp libmaus2/fastx/FastServer.hpp libmaus2/fastx/FastClient.hpp libmaus2/fastx/CompactFastDecoderBase.hpp libmaus2/fastx/CompactFastDecoder.hpp libmaus2/fastx/CompactFastEncoder.hpp libmaus2/fastx/CompactReadContainer.hpp libmaus2/fastx/SocketFastAReader.hpp libmaus2/fastx/SocketFastQReader.hpp libmaus2/fastx/SubSamplingFastReader.hpp libmaus2/fastx/SlashStrip.hpp libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp libmaus2/fastx/Phred.hpp libmaus2/fastx/FastQElement.hpp libmaus2/fastx/ComputeFastXIntervals.hpp libmaus2/fastx/FqWeightQuantiser.hpp libmaus2/fastx/CompactFastQHeader.hpp libmaus2/fastx/CompactFastQContext.hpp libmaus2/fastx/CompactFastQDecoderBase.hpp libmaus2/fastx/CompactFastQContainerDictionary.hpp libmaus2/fastx/CompactFastQContainer.hpp libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp libmaus2/fastx/CompactFastQBlockGenerator.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/fastx' libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.195 libmaus2_simd_align_256.so.2 || { rm -f libmaus2_simd_align_256.so.2 && ln -s libmaus2_simd_align_256.so.2.0.195 libmaus2_simd_align_256.so.2; }; }) libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.195 libmaus2_simd_align_256.so || { rm -f libmaus2_simd_align_256.so && ln -s libmaus2_simd_align_256.so.2.0.195 libmaus2_simd_align_256.so; }; }) /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/fm' libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.la /usr/bin/install -c -m 644 libmaus2/fm/FM.hpp libmaus2/fm/SampledSA.hpp libmaus2/fm/SampledISA.hpp libmaus2/fm/MausFmToBwaConversion.hpp libmaus2/fm/BidirectionalIndexInterval.hpp libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp libmaus2/fm/DictionaryInfo.hpp libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp libmaus2/fm/BidirectionalDnaIndexTemplate.hpp libmaus2/fm/KmerCache.hpp libmaus2/fm/FA4CompactSampledSuffixArray.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/fm' libtool: install: /usr/bin/install -c .libs/libmaus2.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/GammaEncoder.hpp libmaus2/gamma/GammaDecoder.hpp libmaus2/gamma/GammaGapEncoder.hpp libmaus2/gamma/GammaGapDecoder.hpp libmaus2/gamma/GammaRLDecoder.hpp libmaus2/gamma/GammaRLEncoder.hpp libmaus2/gamma/SparseGammaGapEncoder.hpp libmaus2/gamma/SparseGammaGapDecoder.hpp libmaus2/gamma/SparseGammaGapMerge.hpp libmaus2/gamma/SparseGammaGapFile.hpp libmaus2/gamma/SparseGammaGapMultiFile.hpp libmaus2/gamma/SparseGammaGapFileSet.hpp libmaus2/gamma/SparseGammaGapFileLevelSet.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp libmaus2/gamma/SparseGammaGapConcatDecoder.hpp libmaus2/gamma/SparseGammaGapMultiFileSet.hpp libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp libmaus2/gamma/SparseGammaGapBlockEncoder.hpp libmaus2/gamma/GammaDifferenceEncoder.hpp libmaus2/gamma/GammaDifferenceDecoder.hpp libmaus2/gamma/GammaDifferenceMerge.hpp libmaus2/gamma/GammaDifferenceOutputBuffer.hpp libmaus2/gamma/GammaEncoderBase.hpp libmaus2/gamma/SimpleGammaEncoderData.hpp libmaus2/gamma/SimpleGammaEncoder.hpp libmaus2/gamma/GammaDecoderBase.hpp libmaus2/gamma/SimpleGammaDecoderData.hpp libmaus2/gamma/SimpleGammaDecoder.hpp libmaus2/gamma/SimpleGammaEncoderArray.hpp libmaus2/gamma/GammaPartitionEncoder.hpp libmaus2/gamma/GammaIntervalEncoder.hpp libmaus2/gamma/GammaPartitionDecoder.hpp libmaus2/gamma/GammaIntervalDecoder.hpp libmaus2/gamma/GammaPDEncoder.hpp libmaus2/gamma/GammaPDDecoder.hpp libmaus2/gamma/GammaPDIndexDecoderBase.hpp libmaus2/gamma/GammaPDIndexDecoder.hpp libmaus2/gamma/Interval.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/gamma/' /usr/bin/install -c -m 644 libmaus2/gamma/FlaggedInterval.hpp libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/gamma/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/geometry' /usr/bin/install -c -m 644 libmaus2/geometry/RangeSet.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/geometry' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/graph' /usr/bin/install -c -m 644 libmaus2/graph/TripleEdge.hpp libmaus2/graph/TripleEdgeInput.hpp libmaus2/graph/TripleEdgeOutput.hpp libmaus2/graph/TripleEdgeOutputMerge.hpp libmaus2/graph/TripleEdgeOperations.hpp libmaus2/graph/TripleEdgeBuffer.hpp libmaus2/graph/TripleEdgeBufferSet.hpp libmaus2/graph/TripleEdgeOutputSet.hpp libmaus2/graph/U64Buffer.hpp libmaus2/graph/TripleIOTest.hpp libmaus2/graph/EdgeList.hpp libmaus2/graph/EdgeBuffer.hpp libmaus2/graph/EdgeListLocalFlush.hpp libmaus2/graph/EdgeListLocalLockedFlush.hpp libmaus2/graph/EdgeListLocked.hpp libmaus2/graph/EdgeBufferLocal.hpp libmaus2/graph/EdgeBufferLocalLocked.hpp libmaus2/graph/EdgeListLockedSet.hpp libmaus2/graph/LocalEdgeSet.hpp libmaus2/graph/TripleEdgeCompact.hpp libmaus2/graph/FilteredGraphTypes.hpp libmaus2/graph/GraphEdge.hpp libmaus2/graph/GraphEdgeBuffer.hpp libmaus2/graph/GraphEdgeBlockBuffer.hpp libmaus2/graph/GraphEdgeHeapComparator.hpp libmaus2/graph/GraphEdgeMerge.hpp libmaus2/graph/StronglyConnectedComponents.hpp libmaus2/graph/IdentityTargetProjector.hpp libmaus2/graph/ReachableVertices.hpp libmaus2/graph/TopologicalSorting.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/graph' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/hashing' /usr/bin/install -c -m 644 libmaus2/fastx/CompactFastQSingleBlockReader.hpp libmaus2/fastx/CompactFastQMultiBlockReader.hpp libmaus2/fastx/CompactFastTerminator.hpp libmaus2/fastx/CompactFastReplace.hpp libmaus2/fastx/QReorder.hpp libmaus2/fastx/StreamFastReaderBase.hpp libmaus2/fastx/StreamFastQReader.hpp libmaus2/fastx/GzipStreamFastQReader.hpp libmaus2/fastx/GzipFileFastQReader.hpp libmaus2/fastx/FastQBgzfWriter.hpp libmaus2/fastx/StreamFastAReader.hpp libmaus2/fastx/FastALineParserLineInfo.hpp libmaus2/fastx/FastADefinedBasesTable.hpp libmaus2/fastx/FastAMapTable.hpp libmaus2/fastx/FastAMatchTable.hpp libmaus2/fastx/FastALineParser.hpp libmaus2/fastx/FastAStreamWrapper.hpp libmaus2/fastx/FastAStream.hpp libmaus2/fastx/FastAStreamSet.hpp libmaus2/fastx/BgzfFastAIndexEntry.hpp libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp libmaus2/fastx/FastABgzfIndexEntry.hpp libmaus2/fastx/FastABgzfIndex.hpp libmaus2/fastx/FastABgzfDecoder.hpp libmaus2/fastx/FastABgzfDecoderBuffer.hpp libmaus2/fastx/FastAIndexEntry.hpp libmaus2/fastx/FastAIndex.hpp libmaus2/fastx/FastAInfo.hpp libmaus2/fastx/FastATwoBitTable.hpp libmaus2/fastx/FastABPConstants.hpp libmaus2/fastx/FastABPGenerator.hpp libmaus2/fastx/FastaBPSequenceDecoder.hpp libmaus2/fastx/FastaBPDecoder.hpp libmaus2/fastx/NameInfoBase.hpp libmaus2/fastx/NameInfo.hpp libmaus2/fastx/RefPathToken.hpp libmaus2/fastx/RefPathTokenVector.hpp libmaus2/fastx/RefPathTokenVectorSequence.hpp libmaus2/fastx/RefPathLookup.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/fastx' /usr/bin/install -c -m 644 libmaus2/hashing/hash.hpp libmaus2/hashing/CircularHash.hpp libmaus2/hashing/ConstantStringHash.hpp libmaus2/hashing/Crc32.hpp libmaus2/hashing/MurmurHash3.h '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/hashing' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/hdf5' /usr/bin/install -c -m 644 libmaus2/hdf5/HDF5MuteErrorHandler.hpp libmaus2/hdf5/HDF5Handle.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/hdf5' /usr/bin/install -c -m 644 libmaus2/fastx/DNAIndexMetaDataSequence.hpp libmaus2/fastx/DNAIndexMetaData.hpp libmaus2/fastx/DNAIndexMetaDataBigBand.hpp libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp libmaus2/fastx/CoordinateCache.hpp libmaus2/fastx/LineBufferFastAReader.hpp libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp libmaus2/fastx/FastAToCompact4BigBand.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/fastx' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/huffman' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/index/' /usr/bin/install -c -m 644 libmaus2/huffman/CompressTable.hpp libmaus2/huffman/DecodeTable.hpp libmaus2/huffman/EncodeTable.hpp libmaus2/huffman/hufEncodeString.hpp libmaus2/huffman/HuffmanBase.hpp libmaus2/huffman/huffman.hpp libmaus2/huffman/HuffmanSorting.hpp libmaus2/huffman/HuffmanTreeInnerNode.hpp libmaus2/huffman/HuffmanTreeLeafComparator.hpp libmaus2/huffman/HuffmanTreeLeaf.hpp libmaus2/huffman/HuffmanTreeNode.hpp libmaus2/huffman/CanonicalEncoder.hpp libmaus2/huffman/RLDecoder.hpp libmaus2/huffman/RLEncoder.hpp libmaus2/huffman/HuffmanEncoderFile.hpp libmaus2/huffman/IndexLoader.hpp libmaus2/huffman/GapDecoder.hpp libmaus2/huffman/GapEncoder.hpp libmaus2/huffman/FileStreamBaseType.hpp libmaus2/huffman/BitInputBuffer.hpp libmaus2/huffman/PairAddSecond.hpp libmaus2/huffman/IndexEntry.hpp libmaus2/huffman/IndexLoaderBase.hpp libmaus2/huffman/RLDecoderIndexBase.hpp libmaus2/huffman/GapDecoderIndexBase.hpp libmaus2/huffman/IndexDecoderDataArray.hpp libmaus2/huffman/HuffmanInputFile.hpp libmaus2/huffman/KvInitResult.hpp libmaus2/huffman/HuffmanTree.hpp libmaus2/huffman/SymCountEncoder.hpp libmaus2/huffman/SymCountDecoder.hpp libmaus2/huffman/SymCount.hpp libmaus2/huffman/IndexWriter.hpp libmaus2/huffman/SymCountRun.hpp libmaus2/huffman/RLInitType.hpp libmaus2/huffman/RLRun.hpp libmaus2/huffman/LFInfo.hpp libmaus2/huffman/LFSupportDecoder.hpp libmaus2/huffman/LFSupportEncoder.hpp libmaus2/huffman/LFSupportBitDecoder.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/huffman' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/irods' /usr/bin/install -c -m 644 libmaus2/irods/IRodsFileBase.hpp libmaus2/irods/IRodsSystem.hpp libmaus2/irods/IRodsCommProvider.hpp libmaus2/irods/IRodsInputStreamBuffer.hpp libmaus2/irods/IRodsInputStream.hpp libmaus2/irods/IRodsInputStreamFactory.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/irods' /usr/bin/install -c -m 644 libmaus2/index/ExternalMemoryIndexGenerator.hpp libmaus2/index/ExternalMemoryIndexRecord.hpp libmaus2/index/ExternalMemoryIndexDecoder.hpp libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/index/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lcp' /usr/bin/install -c -m 644 libmaus2/huffman/LFSetBit.hpp libmaus2/huffman/LFSetBitDecoder.hpp libmaus2/huffman/LFSetBitEncoder.hpp libmaus2/huffman/LFValueEncoder.hpp libmaus2/huffman/LFValueDecoder.hpp libmaus2/huffman/LFValue.hpp libmaus2/huffman/LFPhiPairDecoder.hpp libmaus2/huffman/LFPhiPairEncoder.hpp libmaus2/huffman/LFPhiPair.hpp libmaus2/huffman/LFPhiPairLCP.hpp libmaus2/huffman/LFPhiPairLCPDecoder.hpp libmaus2/huffman/LFPhiPairLCPEncoder.hpp libmaus2/huffman/LFRankLCP.hpp libmaus2/huffman/LFRankLCPDecoder.hpp libmaus2/huffman/LFRankLCPEncoder.hpp libmaus2/huffman/SymBit.hpp libmaus2/huffman/SymBitDecoder.hpp libmaus2/huffman/SymBitEncoder.hpp libmaus2/huffman/SymBitRun.hpp libmaus2/huffman/LFRankPos.hpp libmaus2/huffman/LFRankPosEncoder.hpp libmaus2/huffman/LFRankPosDecoder.hpp libmaus2/huffman/LFSymRankPos.hpp libmaus2/huffman/LFSymRankPosDecoder.hpp libmaus2/huffman/LFSymRankPosEncoder.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/huffman' /usr/bin/install -c -m 644 libmaus2/lcp/LCP.hpp libmaus2/lcp/OracleLCP.hpp libmaus2/lcp/SuccinctLCP.hpp libmaus2/lcp/WaveletLCPResult.hpp libmaus2/lcp/WaveletLCP.hpp libmaus2/lcp/ComputeSuccinctLCPResult.hpp libmaus2/lcp/PLCPBitDecoder.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lcp' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lcs' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lf' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lcs/SuffixArrayLCS.hpp libmaus2/lcs/LCSRef.hpp libmaus2/lcs/LCSDynamic.hpp libmaus2/lcs/SuffixPrefix.hpp libmaus2/lcs/OverlapComputation.hpp libmaus2/lcs/LCS.hpp libmaus2/lcs/GenericEditDistance.hpp libmaus2/lcs/EditDistanceResult.hpp libmaus2/lcs/BaseConstants.hpp libmaus2/lcs/PenaltyConstants.hpp libmaus2/lcs/TraceContainer.hpp libmaus2/lcs/GenericAlignmentPrint.hpp libmaus2/lcs/SuffixPrefixResult.hpp libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp libmaus2/lcs/OffsetElement.hpp libmaus2/lcs/HashContainer.hpp libmaus2/lcs/HashContainer2.hpp libmaus2/lcs/DistNodeType.hpp libmaus2/lcs/OverlapComputationBlockRequest.hpp libmaus2/lcs/OverlapOrientation.hpp libmaus2/lcs/OrientationWeightEncoding.hpp libmaus2/lcs/CheckOverlapResult.hpp libmaus2/lcs/CheckOverlapResultIdComparator.hpp libmaus2/lcs/CheckOverlapResultIdHeapComparator.hpp libmaus2/lcs/CheckOverlapResultInput.hpp libmaus2/lcs/CheckOverlapResultInputPushBack.hpp libmaus2/lcs/CheckOverlapResultMergeInput.hpp libmaus2/lcs/CheckOverlapScoreComparatorGreater.hpp libmaus2/lcs/CheckOverlapResultOperations.hpp libmaus2/lcs/HammingOverlapDetection.hpp libmaus2/lcs/AlignmentPrint.hpp libmaus2/lcs/AlignmentTraceContainer.hpp libmaus2/lcs/EditDistance.hpp libmaus2/lcs/BandedEditDistance.hpp libmaus2/lcs/MetaEditDistance.hpp libmaus2/lcs/EditDistanceTraceContainer.hpp libmaus2/lcs/EditDistancePriorityType.hpp libmaus2/lcs/LocalBaseConstants.hpp libmaus2/lcs/LocalPenaltyConstants.hpp libmaus2/lcs/LocalAlignmentTraceContainer.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/lru/LRU.hpp libmaus2/lru/SparseLRU.hpp libmaus2/lru/SparseLRUFileBunch.hpp libmaus2/lru/FileBunchLRU.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lru' /usr/bin/install -c -m 644 libmaus2/lf/LF.hpp libmaus2/lf/HuffmanLF.hpp libmaus2/lf/LFZero.hpp libmaus2/lf/DArray.hpp libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp libmaus2/lf/LFBase.hpp libmaus2/lf/QuickLF.hpp libmaus2/lf/MultiRankLF.hpp libmaus2/lf/MultiRankCacheLF.hpp libmaus2/lf/ImpCacheLineRankLF.hpp libmaus2/lf/ImpCacheLineRankLFNonZero.hpp libmaus2/lf/ImpHuffmanWaveletLF.hpp libmaus2/lf/ImpWTLF.hpp libmaus2/lf/RLIndexLF.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lf' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lsf' /usr/bin/install -c -m 644 libmaus2/lsf/LSFProcess.hpp libmaus2/lsf/ProcessSet.hpp libmaus2/lsf/Process.hpp libmaus2/lsf/LSFDispatcherBase.hpp libmaus2/lsf/LSFStateBase.hpp libmaus2/lsf/DispatchedLsfProcess.hpp libmaus2/lsf/SimpleDispatchedLsfProcessSet.hpp libmaus2/lsf/LSFTaskQueue.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lsf' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lz/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/math' /usr/bin/install -c -m 644 libmaus2/lz/Inflate.hpp libmaus2/lz/Deflate.hpp libmaus2/lz/GzipHeader.hpp libmaus2/lz/StreamWrapper.hpp libmaus2/lz/GzipSingleStream.hpp libmaus2/lz/GzipStream.hpp libmaus2/lz/GzipStreamWrapper.hpp libmaus2/lz/BufferedGzipStream.hpp libmaus2/lz/StdOstreamSink.hpp libmaus2/lz/IstreamSource.hpp libmaus2/lz/SnappyCompress.hpp libmaus2/lz/BgzfInflate.hpp libmaus2/lz/BgzfInflateWrapper.hpp libmaus2/lz/BgzfInflateStream.hpp libmaus2/lz/BgzfDeflate.hpp libmaus2/lz/BgzfInflateBase.hpp libmaus2/lz/BgzfInflateBlock.hpp libmaus2/lz/BgzfInflateParallel.hpp libmaus2/lz/BgzfInflateParallelWrapper.hpp libmaus2/lz/BgzfInflateParallelStream.hpp libmaus2/lz/BgzfDeflateBase.hpp libmaus2/lz/BgzfInflateBlockIdComparator.hpp libmaus2/lz/BgzfInflateBlockIdInfo.hpp libmaus2/lz/BgzfInflateParallelContext.hpp libmaus2/lz/BgzfInflateParallelThread.hpp libmaus2/lz/BgzfDeflateBlockIdInfo.hpp libmaus2/lz/BgzfDeflateBlockIdComparator.hpp libmaus2/lz/BgzfDeflateParallelContext.hpp libmaus2/lz/BgzfDeflateParallelThread.hpp libmaus2/lz/BgzfConstants.hpp libmaus2/lz/BgzfDeflateHeaderFunctions.hpp libmaus2/lz/BgzfDeflateInputBufferBase.hpp libmaus2/lz/BgzfDeflateOutputBufferBase.hpp libmaus2/lz/BgzfDeflateZStreamBase.hpp libmaus2/lz/BgzfInflateHeaderBase.hpp libmaus2/lz/BgzfInflateZStreamBase.hpp libmaus2/lz/BgzfRecode.hpp libmaus2/lz/BgzfThreadOpBase.hpp libmaus2/lz/BgzfInflateDeflateParallel.hpp libmaus2/lz/BgzfInflateDeflateParallelThread.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/math/isqrt.hpp libmaus2/math/bitsPerNum.hpp libmaus2/math/MetaLog.hpp libmaus2/math/lowbits.hpp libmaus2/math/numbits.hpp libmaus2/math/gcd.hpp libmaus2/math/binom.hpp libmaus2/math/primes16.hpp libmaus2/math/ilog.hpp libmaus2/math/DoubleCode.hpp libmaus2/math/iabs.hpp libmaus2/math/IPower.hpp libmaus2/math/Log.hpp libmaus2/math/ipow.hpp libmaus2/math/IntegerInterval.hpp libmaus2/math/DecimalNumberParser.hpp libmaus2/math/UnsignedInteger.hpp libmaus2/math/Rational.hpp libmaus2/math/BernoulliNumber.hpp libmaus2/math/Faulhaber.hpp libmaus2/math/RepetetiveKmerFreqEstimate.hpp libmaus2/math/GmpInteger.hpp libmaus2/math/GmpFloat.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/math' /usr/bin/install -c -m 644 libmaus2/lcs/LocalEditDistanceTraceContainer.hpp libmaus2/lcs/LocalAlignmentPrint.hpp libmaus2/lcs/LocalEditDistance.hpp libmaus2/lcs/LocalEditDistanceResult.hpp libmaus2/lcs/MetaLocalEditDistance.hpp libmaus2/lcs/BandedLocalEditDistance.hpp libmaus2/lcs/ND.hpp libmaus2/lcs/NDextend.hpp libmaus2/lcs/AlignmentStatistics.hpp libmaus2/lcs/NDextendAllPass.hpp libmaus2/lcs/NDextendACGTPass.hpp libmaus2/lcs/NDextend1234Pass.hpp libmaus2/lcs/BitVectorResultCallbackInterface.hpp libmaus2/lcs/BitVector.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp libmaus2/lcs/Aligner.hpp libmaus2/lcs/AlignerFactory.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lcs' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/network' /usr/bin/install -c -m 644 libmaus2/lz/BgzfDeflateParallel.hpp libmaus2/lz/BgzfVirtualOffset.hpp libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp libmaus2/lz/BgzfDeflateOutputCallback.hpp libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp libmaus2/lz/BgzfRecodeParallel.hpp libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp libmaus2/lz/Lz4Base.hpp libmaus2/lz/Lz4CompressStreamBuffer.hpp libmaus2/lz/Lz4CompressWrapper.hpp libmaus2/lz/Lz4Decoder.hpp libmaus2/lz/Lz4Index.hpp libmaus2/lz/Lz4Compress.hpp libmaus2/lz/Lz4CompressStream.hpp libmaus2/lz/Lz4DecoderBuffer.hpp libmaus2/lz/GzipOutputStreamBuffer.hpp libmaus2/lz/GzipOutputStream.hpp libmaus2/lz/BgzfInflateInfo.hpp libmaus2/lz/BgzfStreamWrapper.hpp libmaus2/lz/CompressorObject.hpp libmaus2/lz/CompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedOutputStream.hpp libmaus2/lz/SnappyCompressorObject.hpp libmaus2/lz/SnappyCompressorObjectFactory.hpp libmaus2/lz/DecompressorObject.hpp libmaus2/lz/DecompressorObjectFactory.hpp libmaus2/lz/SnappyDecompressorObject.hpp libmaus2/lz/SnappyDecompressorObjectFactory.hpp libmaus2/lz/SimpleCompressedInputStream.hpp libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp libmaus2/lz/SimpleCompressedConcatInputStream.hpp libmaus2/lz/SnappyInputStreamArrayFile.hpp libmaus2/lz/SnappyInputStreamArray.hpp libmaus2/lz/SnappyStringInputStream.hpp libmaus2/lz/SnappyOffsetFileInputStream.hpp libmaus2/lz/SnappyFileInputStream.hpp libmaus2/lz/SnappyInputStream.hpp libmaus2/lz/SnappyFileOutputStream.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lz/' /usr/bin/install -c -m 644 libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp libmaus2/lcs/BandedAligner.hpp libmaus2/lcs/BandedAlignerFactory.hpp libmaus2/lcs/NP.hpp libmaus2/lcs/NNP.hpp libmaus2/lcs/NNPTraceElement.hpp libmaus2/lcs/NNPTraceContainer.hpp libmaus2/lcs/NNPAlignResult.hpp libmaus2/lcs/DalignerNP.hpp libmaus2/lcs/DalignerLocalAlignment.hpp libmaus2/lcs/FragmentEnvelopeYScore.hpp libmaus2/lcs/FragmentEnvelopeFragment.hpp libmaus2/lcs/FragmentEnvelope.hpp libmaus2/lcs/EnvelopeFragment.hpp libmaus2/lcs/ScoreBandedAligner.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp libmaus2/lcs/NNPLocalAligner.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lcs' /usr/bin/install -c -m 644 libmaus2/network/Socket.hpp libmaus2/network/GetHostName.hpp libmaus2/network/LogSocket.hpp libmaus2/network/SocketFastReaderBase.hpp libmaus2/network/Interface.hpp libmaus2/network/GetDottedAddress.hpp libmaus2/network/UDPSocket.hpp libmaus2/network/GenericServer.hpp libmaus2/network/SocketOutputBuffer8.hpp libmaus2/network/SocketOutputBuffer8Set.hpp libmaus2/network/sendReceiveFd.h libmaus2/network/SocketPair.hpp libmaus2/network/FileDescriptorPasser.hpp libmaus2/network/LogReceiverTestProcess.hpp libmaus2/network/LogReceiver.hpp libmaus2/network/LogReceiverDispatcherBase.hpp libmaus2/network/SocketInputStreamBuffer.hpp libmaus2/network/SocketInputStream.hpp libmaus2/network/HttpAbsoluteUrl.hpp libmaus2/network/SocketInputOutputInterface.hpp libmaus2/network/FtpUrl.hpp libmaus2/network/HttpBody.hpp libmaus2/network/HttpHeader.hpp libmaus2/network/FtpSocket.hpp libmaus2/network/UrlBase.hpp libmaus2/network/HttpHeaderWrapper.hpp libmaus2/network/HttpBodyWrapper.hpp libmaus2/network/FtpSocketWrapper.hpp libmaus2/network/HttpSocketInputStreamBuffer.hpp libmaus2/network/HttpSocketInputStream.hpp libmaus2/network/FtpSocketInputStreamBuffer.hpp libmaus2/network/FtpSocketInputStream.hpp libmaus2/network/FileUrl.hpp libmaus2/network/UrlInputStreamBufferWrapper.hpp libmaus2/network/UrlInputStream.hpp libmaus2/network/GnuTLSInit.hpp libmaus2/network/GnuTLSSocket.hpp libmaus2/network/SingleFileServer.hpp libmaus2/network/UrlInputStreamFactory.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/network' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/parallel' /usr/bin/install -c -m 644 libmaus2/lz/SnappyOutputStream.hpp libmaus2/lz/SimpleCompressedStreamInterval.hpp libmaus2/lz/ZlibCompressorObjectFactory.hpp libmaus2/lz/ZlibDecompressorObjectFactory.hpp libmaus2/lz/ZlibCompressorObject.hpp libmaus2/lz/ZlibDecompressorObject.hpp libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp libmaus2/lz/SimpleCompressedInputBlock.hpp libmaus2/lz/SimpleCompressedInputBlockConcat.hpp libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp libmaus2/lz/RAZFConstants.hpp libmaus2/lz/RAZFDecoderBuffer.hpp libmaus2/lz/RAZFDecoder.hpp libmaus2/lz/RAZFIndex.hpp libmaus2/lz/IGzipDeflate.hpp libmaus2/lz/IsGzip.hpp libmaus2/lz/BufferedGzipStreamWrapper.hpp libmaus2/lz/StreamWrapperBuffer.hpp libmaus2/lz/BufferedGzipStreamBuffer.hpp libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp libmaus2/lz/PlainOrGzipStream.hpp libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp libmaus2/lz/LineSplittingGzipOutputStream.hpp libmaus2/lz/CompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp libmaus2/lz/XzDecoder.hpp libmaus2/lz/XzInputStreamBuffer.hpp libmaus2/lz/XzInputStream.hpp libmaus2/lz/BlockInflate.hpp libmaus2/lz/ConcatBlockInflate.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lz/' libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a /usr/bin/install -c -m 644 libmaus2/parallel/OMPLock.hpp libmaus2/parallel/PosixMutex.hpp libmaus2/parallel/PosixSpinLock.hpp libmaus2/parallel/PosixSemaphore.hpp libmaus2/parallel/SynchronousQueue.hpp libmaus2/parallel/TerminatableSynchronousQueue.hpp libmaus2/parallel/PosixMutexArray.hpp libmaus2/parallel/PosixThread.hpp libmaus2/parallel/Pipe.hpp libmaus2/parallel/SynchronousHeap.hpp libmaus2/parallel/TerminatableSynchronousHeap.hpp libmaus2/parallel/SynchronousReorderSet.hpp libmaus2/parallel/TerminatableSynchronousReorderSet.hpp libmaus2/parallel/SynchronousCounter.hpp libmaus2/parallel/PosixProcess.hpp libmaus2/parallel/OMPNumThreadsScope.hpp libmaus2/parallel/LockedBool.hpp libmaus2/parallel/ThreadWorkPackage.hpp libmaus2/parallel/ThreadWorkPackageComparator.hpp libmaus2/parallel/ThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/ThreadWorkPackageDispatcher.hpp libmaus2/parallel/ThreadPoolInterface.hpp libmaus2/parallel/ThreadPoolThread.hpp libmaus2/parallel/ThreadPool.hpp libmaus2/parallel/SimpleThreadPool.hpp libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp libmaus2/parallel/SimpleThreadPoolInterface.hpp libmaus2/parallel/SimpleThreadPoolThread.hpp libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp libmaus2/parallel/SimpleThreadWorkPackage.hpp libmaus2/parallel/LockedQueue.hpp libmaus2/parallel/NumCpus.hpp libmaus2/parallel/LockedFreeList.hpp libmaus2/parallel/LockedHeap.hpp libmaus2/parallel/LockedCounter.hpp libmaus2/parallel/LockedGrowingFreeList.hpp libmaus2/parallel/PosixConditionSemaphore.hpp libmaus2/parallel/NamedPosixSemaphore.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/parallel' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/quantisation/Quantiser.hpp libmaus2/quantisation/ClusterComputation.hpp libmaus2/quantisation/KmeansDataType.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/quantisation/' /usr/bin/install -c -m 644 libmaus2/lz/ZlibInterface.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/lz/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/random' /usr/bin/install -c -m 644 libmaus2/random/Random.hpp libmaus2/random/UniformUnitRandom.hpp libmaus2/random/GaussianRandom.hpp libmaus2/random/DNABaseNoiseSpiker.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/random' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/parallel/SimpleSemaphoreInterface.hpp libmaus2/parallel/TimedSemaphoreInterface.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/parallel' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/regex/' /usr/bin/install -c -m 644 libmaus2/rank/ChooseCache.hpp libmaus2/rank/CodeBase.hpp libmaus2/rank/DecodeCache.hpp libmaus2/rank/ERank222BAppend.hpp libmaus2/rank/ERank222B.hpp libmaus2/rank/ERank222BP.hpp libmaus2/rank/ERank222.hpp libmaus2/rank/ERank22B.hpp libmaus2/rank/ERank22.hpp libmaus2/rank/ERank2.hpp libmaus2/rank/ERank3C.hpp libmaus2/rank/ERank3.hpp libmaus2/rank/ERankBase.hpp libmaus2/rank/ERank.hpp libmaus2/rank/log2table.hpp libmaus2/rank/popcnt.hpp libmaus2/rank/RankTable.hpp libmaus2/rank/Proc01.hpp libmaus2/rank/EncodeCache.hpp libmaus2/rank/CacheLineRank.hpp libmaus2/rank/ImpCacheLineRank.hpp libmaus2/rank/ERank222BBase.hpp libmaus2/rank/ERank222BAppendDynamic.hpp libmaus2/rank/RunLengthBitVectorBase.hpp libmaus2/rank/RunLengthBitVector.hpp libmaus2/rank/RunLengthBitVectorGenerator.hpp libmaus2/rank/RunLengthBitVectorStream.hpp libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp libmaus2/rank/FastRank.hpp libmaus2/rank/BSwapBase.hpp libmaus2/rank/DNARank.hpp libmaus2/rank/DNARankKmerCache.hpp libmaus2/rank/DNARankBiDir.hpp libmaus2/rank/DNARankBiDirRange.hpp libmaus2/rank/DNARankMEM.hpp libmaus2/rank/DNARankMEMPosComparator.hpp libmaus2/rank/DNARankSMEMContext.hpp libmaus2/rank/DNARankSMEMComputation.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/rank' /usr/bin/install -c -m 644 libmaus2/regex/PosixRegex.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/regex/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/rl' /usr/bin/install -c -m 644 libmaus2/rl/RLIndex.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/rl' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/rmq' /usr/bin/install -c -m 644 libmaus2/rmq/FischerSystematicSuccinctRMQ.hpp libmaus2/rmq/QuickDynamicRMQ.hpp libmaus2/rmq/CartesianTree.hpp libmaus2/rmq/RMMTree.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/rmq' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/select' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/serialize/' /usr/bin/install -c -m 644 libmaus2/select/ESelect222B.hpp libmaus2/select/ESelectBase.hpp libmaus2/select/ESelectSimple.hpp libmaus2/select/ImpCacheLineSelectSupport.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/select' /usr/bin/install -c -m 644 libmaus2/serialize/Serialize.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/serialize/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/sorting' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/suffixsort' /usr/bin/install -c -m 644 libmaus2/sorting/sorting.hpp libmaus2/sorting/ParallelRadixSort.hpp libmaus2/sorting/SerialRadixSort64.hpp libmaus2/sorting/PairFileSorting.hpp libmaus2/sorting/InPlaceParallelSort.hpp libmaus2/sorting/MergingReadBack.hpp libmaus2/sorting/SortingBufferedOutputFile.hpp libmaus2/sorting/MergeStepBinSearchResult.hpp libmaus2/sorting/ParallelStableSort.hpp libmaus2/sorting/SemiExternalKeyTupleSort.hpp libmaus2/sorting/InterleavedRadixSort.hpp libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp libmaus2/sorting/ParallelRunLengthRadixSort.hpp libmaus2/sorting/ParallelExternalRadixSort.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/sorting' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/install -c -m 644 libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/suffixsort/bwtb3m' /usr/bin/install -c -m 644 libmaus2/suffixsort/SkewSuffixSort.hpp libmaus2/suffixsort/divsufsort.hpp libmaus2/suffixsort/SAIS_Mori.hpp libmaus2/suffixsort/SuccinctFactorList.hpp libmaus2/suffixsort/SAISUtils.hpp libmaus2/suffixsort/OSInduce.hpp libmaus2/suffixsort/CircularBwt.hpp libmaus2/suffixsort/CircularSuffixComparator.hpp libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp libmaus2/suffixsort/BwtMergeZBlock.hpp libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp libmaus2/suffixsort/BwtMergeBlockSortResult.hpp libmaus2/suffixsort/BwtMergeZBlockRequest.hpp libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp libmaus2/suffixsort/GapMergePacket.hpp libmaus2/suffixsort/BwtMergeEnumBase.hpp libmaus2/suffixsort/ByteInputTypes.hpp libmaus2/suffixsort/CompactInputTypes.hpp libmaus2/suffixsort/PacInputTypes.hpp libmaus2/suffixsort/PacTermInputTypes.hpp libmaus2/suffixsort/Utf8InputTypes.hpp libmaus2/suffixsort/Lz4InputTypes.hpp libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp libmaus2/suffixsort/GapArrayByte.hpp libmaus2/suffixsort/GapArrayByteDecoder.hpp libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp libmaus2/suffixsort/SmallestRotation.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/suffixsort' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/suffixtree' /usr/bin/install -c -m 644 libmaus2/suffixtree/CompressedSuffixTree.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/suffixtree' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/sv' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/timing' /usr/bin/install -c -m 644 libmaus2/sv/sv.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/sv' /usr/bin/install -c -m 644 libmaus2/timing/RealTimeClock.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/timing' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/trie' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/types/' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/uint' /usr/bin/install -c -m 644 libmaus2/uint/uint.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/uint' /usr/bin/install -c -m 644 libmaus2/types/types.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/types/' /usr/bin/install -c -m 644 libmaus2/trie/TrieState.hpp libmaus2/trie/SimpleTrie.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/trie' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/util' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/wavelet/toWaveletTreeBits.hpp libmaus2/wavelet/WaveletTree.hpp libmaus2/wavelet/HuffmanWaveletTree.hpp libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp libmaus2/wavelet/DynamicWaveletTree.hpp libmaus2/wavelet/ExternalWaveletGenerator.hpp libmaus2/wavelet/ImpWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGenerator.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffmanParallel.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorHuffman.hpp libmaus2/wavelet/ImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffmanParallel.hpp libmaus2/wavelet/RlToHwtBase.hpp libmaus2/wavelet/RlToHwtTermRequest.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/wavelet' /usr/bin/install -c -m 644 libmaus2/util/stringFunctions.hpp libmaus2/util/BitList.hpp libmaus2/util/VarBitList.hpp libmaus2/util/VarList.hpp libmaus2/util/IntervalTree.hpp libmaus2/util/LookupIntervalTree.hpp libmaus2/util/StringSerialisation.hpp libmaus2/util/NumberSerialisation.hpp libmaus2/util/GetFileSize.hpp libmaus2/util/unique_ptr.hpp libmaus2/util/shared_ptr.hpp libmaus2/util/TempFileNameGenerator.hpp libmaus2/util/TempFileNameGeneratorState.hpp libmaus2/util/Demangle.hpp libmaus2/util/BitsPerNum.hpp libmaus2/util/ArgInfo.hpp libmaus2/util/Concat.hpp libmaus2/util/ConcatRequest.hpp libmaus2/util/PosixExecute.hpp libmaus2/util/StackTrace.hpp libmaus2/util/CompactNumberArray.hpp libmaus2/util/ArrayIterator.hpp libmaus2/util/OffsetArray.hpp libmaus2/util/Array832.hpp libmaus2/util/Array864.hpp libmaus2/util/NegativeDifferenceArray32.hpp libmaus2/util/NegativeDifferenceArray64.hpp libmaus2/util/PositiveDifferenceArray32.hpp libmaus2/util/PositiveDifferenceArray64.hpp libmaus2/util/UniqueIndex.hpp libmaus2/util/Terminal.hpp libmaus2/util/nstat.hpp libmaus2/util/WriteableString.hpp libmaus2/util/ForkProcess.hpp libmaus2/util/LogPipe.hpp libmaus2/util/MoveStack.hpp libmaus2/util/LongestIncreasingSubsequence.hpp libmaus2/util/utf8.hpp libmaus2/util/MemLimit.hpp libmaus2/util/Histogram.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/IncreasingList.hpp libmaus2/util/GenericSerialisation.hpp libmaus2/util/ConsoleColor.hpp libmaus2/util/LogPipeMultiplex.hpp libmaus2/util/LogPipeMultiplexGeneric.hpp libmaus2/util/iterator.hpp libmaus2/util/SaturatingCounter.hpp libmaus2/util/I386CacheLineSize.hpp libmaus2/util/IncreasingStack.hpp libmaus2/util/NearestNeighbourDictionary.hpp libmaus2/util/MemUsage.hpp libmaus2/util/unordered_set.hpp libmaus2/util/unordered_map.hpp libmaus2/util/ReverseByteOrder.hpp libmaus2/util/SimpleBloomFilter.hpp libmaus2/util/SimpleCountingHash.hpp libmaus2/util/SimpleHashMap.hpp libmaus2/util/SimpleHashSet.hpp libmaus2/util/OutputFileNameTools.hpp libmaus2/util/LELoad.hpp libmaus2/util/GetObject.hpp libmaus2/util/PutObject.hpp libmaus2/util/PutObjectReverse.hpp libmaus2/util/CountPutObject.hpp libmaus2/util/CountPutIterator.hpp libmaus2/util/PosixFileDescriptor.hpp libmaus2/util/AlphaDigitTable.hpp libmaus2/util/AlphaTable.hpp libmaus2/util/DigitTable.hpp libmaus2/util/TempFileRemovalContainer.hpp libmaus2/util/DynamicLoading.hpp libmaus2/util/Object.hpp libmaus2/util/KMP.hpp libmaus2/util/NumberMapSerialisation.hpp libmaus2/util/Utf8BlockIndex.hpp libmaus2/util/Utf8DecoderBuffer.hpp libmaus2/util/Utf8String.hpp libmaus2/util/UnsignedCharVariant.hpp libmaus2/util/LSFSim.hpp libmaus2/util/ForkProcessLSFSim.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/CountGetObject.hpp libmaus2/util/HistogramSet.hpp libmaus2/util/GenericIntervalTree.hpp libmaus2/util/PosixInputFile.hpp libmaus2/util/OctetString.hpp libmaus2/util/Utf8StringPairAdapter.hpp libmaus2/util/Utf8BlockIndexDecoder.hpp libmaus2/util/Utf8DecoderWrapper.hpp libmaus2/util/TempFileContainer.hpp libmaus2/util/FileTempFileContainer.hpp libmaus2/util/MemTempFileContainer.hpp libmaus2/util/ImpCompactNumberArray.hpp libmaus2/util/ContainerGetObject.hpp libmaus2/util/PushBuffer.hpp libmaus2/util/SuccinctBorderArray.hpp libmaus2/util/LineAccessor.hpp libmaus2/util/StringMapCompare.hpp libmaus2/util/FreeList.hpp libmaus2/util/ToUpperTable.hpp libmaus2/util/BorderArray.hpp libmaus2/util/SimpleHashMapConstants.hpp libmaus2/util/SimpleHashMapKeyPrint.hpp libmaus2/util/GrowingFreeList.hpp libmaus2/util/SimpleHashMapHashCompute.hpp libmaus2/util/SimpleHashMapInsDel.hpp libmaus2/util/SimpleHashMapNumberCast.hpp libmaus2/util/SimpleHashSetInsDel.hpp libmaus2/util/LineBuffer.hpp libmaus2/util/UnsignedIntegerIndexIterator.hpp libmaus2/util/FiniteSizeHeap.hpp libmaus2/util/UnitNum.hpp libmaus2/util/NotDigitOrTermTable.hpp libmaus2/util/ArgInfoParseBase.hpp libmaus2/util/ReverseAdapter.hpp libmaus2/util/MemoryStatistics.hpp libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp libmaus2/util/ArgParser.hpp libmaus2/util/PrefixSums.hpp libmaus2/util/NumberToString.hpp libmaus2/util/SplayTree.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/util' /usr/bin/install -c -m 644 libmaus2/util/Queue.hpp libmaus2/util/ContainerElementFreeList.hpp libmaus2/util/HugePages.hpp libmaus2/util/HugePageAllocator.hpp libmaus2/util/StringAllocTypes.hpp libmaus2/util/Destructable.hpp '/«PKGBUILDDIR»/debian/tmp/usr/include/libmaus2/util' libtool: install: /usr/bin/install -c .libs/libmaus2lsf.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a libtool: install: warning: remember to run `libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making install in test make[2]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Entering directory '/«PKGBUILDDIR»/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Leaving directory '/«PKGBUILDDIR»/test' make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/share/doc/libmaus2' /bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 ChangeLog '/«PKGBUILDDIR»/debian/tmp/usr/share/doc/libmaus2' /usr/bin/install -c -m 644 libmaus2.pc libmaus2lsf.pc libmaus2digests.pc libmaus2seqchksumsfactory.pc '/«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make install-data-hook make[4]: Entering directory '/«PKGBUILDDIR»' cd /«PKGBUILDDIR»/debian/tmp/usr/share/doc/libmaus2 && mv ChangeLog changelog && gzip -f -n -9 changelog make[4]: Leaving directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_install -O--parallel install -d debian/libmaus2/usr/lib/x86_64-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2 debian/libmaus2/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu// install -d debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.so debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.so debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195// install -d debian/libmaus2/usr/share/doc/libmaus2/ cp --reflink=auto -a debian/tmp/usr/share/doc/libmaus2/changelog.gz debian/libmaus2/usr/share/doc/libmaus2// install -d debian/libmaus2-dev/usr/include/ cp --reflink=auto -a debian/tmp/usr/include/libmaus2 debian/libmaus2-dev/usr/include// install -d debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.so debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2lsf.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2digests.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2digests_sse4.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libmaus2seqchksumsfactory.a debian/libmaus2-dev/usr/lib/x86_64-linux-gnu// install -d debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2digests.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2lsf.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2seqchksumsfactory.pc debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/pkgconfig/ dh_installdocs -O--parallel install -p -m0644 debian/copyright debian/libmaus2/usr/share/doc/libmaus2/copyright install -d debian/libmaus2-dev/usr/share/doc/libmaus2-dev install -p -m0644 debian/copyright debian/libmaus2-dev/usr/share/doc/libmaus2-dev/copyright dh_installchangelogs -O--parallel install -p -m0644 debian/changelog debian/libmaus2/usr/share/doc/libmaus2/changelog.Debian install -p -m0644 debian/changelog debian/libmaus2-dev/usr/share/doc/libmaus2-dev/changelog.Debian dh_lintian -O--parallel install -d debian/libmaus2/usr/share/lintian/overrides install -p -m0644 debian/libmaus2.lintian-overrides debian/libmaus2/usr/share/lintian/overrides/libmaus2 dh_perl -O--parallel dh_link -O--parallel rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 ln -sf libmaus2_simd_align_128.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 ln -sf libmaus2_simd_align_256.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2 ln -sf libmaus2lsf.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2 rm -f debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2 ln -sf libmaus2.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2 rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so ln -sf libmaus2_simd_align_128.so.2.0.195 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2.so ln -sf libmaus2.so.2.0.195 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2.so rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so ln -sf libmaus2_simd_align_256.so.2.0.195 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so rm -f debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2lsf.so ln -sf libmaus2lsf.so.2.0.195 debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2lsf.so dh_compress -O--parallel cd debian/libmaus2 chmod a-x usr/share/doc/libmaus2/changelog.Debian gzip -9nf usr/share/doc/libmaus2/changelog.Debian cd '/«PKGBUILDDIR»' cd debian/libmaus2-dev chmod a-x usr/share/doc/libmaus2-dev/changelog.Debian gzip -9nf usr/share/doc/libmaus2-dev/changelog.Debian cd '/«PKGBUILDDIR»' dh_fixperms -O--parallel find debian/libmaus2 -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmaus2 ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmaus2/usr/share/doc -type f ! -regex 'debian/libmaus2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmaus2/usr/share/man debian/libmaus2/usr/man/ debian/libmaus2/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2 -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2 -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2/usr/lib/x86_64-linux-gnu/perl5/5.20 debian/libmaus2/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/libmaus2/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libmaus2/usr/share/lintian/overrides -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libmaus2-dev ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libmaus2-dev/usr/share/doc -type f ! -regex 'debian/libmaus2-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libmaus2-dev/usr/share/man debian/libmaus2-dev/usr/man/ debian/libmaus2-dev/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/perl5/5.20 debian/libmaus2-dev/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/libmaus2-dev/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -O--parallel dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2.0.195 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.so strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2seqchksumsfactory.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2digests.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2lsf.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2digests_sse4.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libmaus2-dev/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.a dh_makeshlibs -O--parallel rm -f debian/libmaus2/DEBIAN/shlibs install -d debian/libmaus2/DEBIAN echo 'libmaus2 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs echo 'libmaus2_simd_align_128 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs echo 'libmaus2_simd_align_256 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs echo 'libmaus2lsf 2 libmaus2' >>debian/libmaus2/DEBIAN/shlibs echo "# Automatically added by dh_makeshlibs">> debian/libmaus2.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-makeshlibs >> debian/libmaus2.postinst.debhelper echo '# End automatically added section' >> debian/libmaus2.postinst.debhelper echo "# Automatically added by dh_makeshlibs">> debian/libmaus2.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-makeshlibs >> debian/libmaus2.postrm.debhelper echo '# End automatically added section' >> debian/libmaus2.postrm.debhelper install -p -m0644 debian/libmaus2.shlibs debian/libmaus2/DEBIAN/shlibs chmod 0644 debian/libmaus2/DEBIAN/shlibs chown 0:0 debian/libmaus2/DEBIAN/shlibs rm -f debian/libmaus2-dev/DEBIAN/shlibs dh_shlibdeps -O--parallel dpkg-shlibdeps -Tdebian/libmaus2.substvars debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.so debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.so debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 dpkg-shlibdeps: warning: symbol pthread_spin_destroy used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs34SimdX86BandedGlobalAlignmentY256_8C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_getvalue used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_attr_setstacksize used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs34SimdX86BandedGlobalAlignmentX128_8C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_init used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol sem_post used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs35SimdX86BandedGlobalAlignmentX128_16C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23lcs29SimdX86GlobalAlignmentX128_16C1Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol pthread_spin_unlock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util10StackTraceD2Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util10StackTraceC2Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray16AutoArray_maxmemE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus23aio10StreamLock8cerrlockE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util8Demangle12demangleNameENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray18AutoArray_memusageE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTIN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol pthread_spin_lock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray22AutoArray_peakmemusageE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray16AutoArray_maxmemE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTIN8libmaus24util10StackTraceE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util8Demangle12demangleNameENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus29autoarray18AutoArray_memusageE used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZNK8libmaus24util10StackTrace8toStringB5cxx11Eb used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_spin_unlock used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN8libmaus24util10StackTraceC2Ev used by debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.so contains an unresolvable reference to symbol _ZN8libmaus24util10StackTraceD2Ev: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libmaus2/usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.so was not linked against libpthread.so.0 (it uses none of the library's symbols) install -d debian/libmaus2-dev/DEBIAN dh_installdeb -O--parallel printf '#!/bin/sh set -e ' > debian/libmaus2/DEBIAN/postinst cat debian/libmaus2.postinst.debhelper >> debian/libmaus2/DEBIAN/postinst chown 0:0 debian/libmaus2/DEBIAN/postinst chmod 0755 debian/libmaus2/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/libmaus2/DEBIAN/postrm cat debian/libmaus2.postrm.debhelper >> debian/libmaus2/DEBIAN/postrm chown 0:0 debian/libmaus2/DEBIAN/postrm chmod 0755 debian/libmaus2/DEBIAN/postrm install -p -m0644 debian/libmaus2.shlibs debian/libmaus2/DEBIAN/shlibs dh_gencontrol -O--parallel echo misc:Depends= >> debian/libmaus2.substvars echo misc:Pre-Depends= >> debian/libmaus2.substvars dpkg-gencontrol -plibmaus2 -ldebian/changelog -Tdebian/libmaus2.substvars -Pdebian/libmaus2 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/libmaus2/DEBIAN/control chown 0:0 debian/libmaus2/DEBIAN/control echo misc:Depends= >> debian/libmaus2-dev.substvars echo misc:Pre-Depends= >> debian/libmaus2-dev.substvars dpkg-gencontrol -plibmaus2-dev -ldebian/changelog -Tdebian/libmaus2-dev.substvars -Pdebian/libmaus2-dev dpkg-gencontrol: warning: Depends field of package libmaus2-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/libmaus2-dev/DEBIAN/control chown 0:0 debian/libmaus2-dev/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: libmaus2 libmaus2-dev dh_gencontrol debug symbol wrapper: packages to act on: libmaus2 libmaus2-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/libmaus2-dbgsym, skipping package libmaus2 dh_gencontrol debug symbol wrapper: no debian/libmaus2-dev-dbgsym, skipping package libmaus2-dev dh_md5sums -O--parallel (cd debian/libmaus2 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/libmaus2/DEBIAN/md5sums chown 0:0 debian/libmaus2/DEBIAN/md5sums (cd debian/libmaus2-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/libmaus2-dev/DEBIAN/md5sums chown 0:0 debian/libmaus2-dev/DEBIAN/md5sums dh_builddeb -O--parallel dpkg-deb --build debian/libmaus2 .. INFO: pkgstriptranslations version 122 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package 'libmaus2' in '../libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb'. dpkg-deb --build debian/libmaus2-dev .. INFO: pkgstriptranslations version 122 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package 'libmaus2-dev' in '../libmaus2-dev_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build libmaus2-2.0.195 dpkg-source: info: using options from libmaus2-2.0.195/debian/source/options: --single-debian-patch dpkg-source: warning: --single-debian-patch is not a valid option for Dpkg::Source::Package::V3::Native dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160527-1637 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.changes: ──────────────────────────────────────────────────────────────── Format: 1.8 Date: Fri, 27 May 2016 16:02:22 +0000 Source: libmaus2 Binary: libmaus2 libmaus2-dev Architecture: amd64 Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 Distribution: wily Urgency: low Maintainer: Launchpad Build Daemon Changed-By: German Tischler Description: libmaus2 - libmaus2 is a collection of data structures and algorithms libmaus2-dev - Development files for libmaus2 (headers, libraries and pkg-config Changes: libmaus2 (2.0.195-1+342+201605271602~ubuntu15.10.1) wily; urgency=low . * Auto build. Checksums-Sha1: b303e371eee32516d7f62d3220e19ca75b282245 2774846 libmaus2-dev_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb 552856ef1208c3cd51058023baea55444eaa45b8 1304714 libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb Checksums-Sha256: f4ae0698e5c2ada7bda87f98c62defb2ab94f1449f910ff4e2bd98d33099248d 2774846 libmaus2-dev_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb 890b485b2c208862b60fe1a10a573860c7f28da33a4e7a58811fb7093aa203db 1304714 libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb Files: f381c85179cf99467f0da7de24c439e2 2774846 libdevel optional libmaus2-dev_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb c277bad88fe97e437de867f2bcca9c5a 1304714 libs optional libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ libmaus2-dev_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb ─────────────────────────────────────────────────────────────── new debian package, version 2.0. size 2774846 bytes: control archive=44281 bytes. 1139 bytes, 22 lines control 137228 bytes, 1547 lines md5sums Package: libmaus2-dev Source: libmaus2 Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 Architecture: amd64 Maintainer: German Tischler Installed-Size: 35752 Depends: libmaus2 (= 2.0.195-1+342+201605271602~ubuntu15.10.1), pkg-config (>= 0.22), zlib1g-dev (>= 1.2.3), libsnappy-dev (>= 1.0.3), seqan-dev (>= 1.2), libgnutls-dev (>= 2.12.14), liblzma-dev (>= 5.1.0) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/gt1/libmaus2 Description: Development files for libmaus2 (headers, libraries and pkg-config files) libmaus2 contains a collection of data structures and algorithms, many of which have applications in bio-informatics. In particular this includes . - I/O classes (single byte and UTF-8) - bitio classes (input, output and various forms of bit level manipulation) - text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) - BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. This package contains the header files and libraries required for developing applications based on libmaus2. drwxr-xr-x root/root 0 2016-05-27 16:37 ./ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/include/ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/include/libmaus2/ -rw-r--r-- root/root 2053 2016-05-27 16:36 ./usr/include/libmaus2/LibMausConfig.hpp drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/include/libmaus2/aio/ -rw-r--r-- root/root 3024 2016-05-27 16:36 ./usr/include/libmaus2/aio/ArrayFile.hpp -rw-r--r-- root/root 4312 2016-05-27 16:36 ./usr/include/libmaus2/aio/ArrayFileContainer.hpp -rw-r--r-- root/root 1582 2016-05-27 16:36 ./usr/include/libmaus2/aio/ArrayInputStream.hpp -rw-r--r-- root/root 6634 2016-05-27 16:36 ./usr/include/libmaus2/aio/ArrayInputStreamBuffer.hpp -rw-r--r-- root/root 2379 2016-05-27 16:36 ./usr/include/libmaus2/aio/ArrayInputStreamFactory.hpp -rw-r--r-- root/root 8996 2016-05-27 16:36 ./usr/include/libmaus2/aio/AsynchronousBufferReader.hpp -rw-r--r-- root/root 4318 2016-05-27 16:36 ./usr/include/libmaus2/aio/AsynchronousFastReaderBase.hpp -rw-r--r-- root/root 12350 2016-05-27 16:36 ./usr/include/libmaus2/aio/AsynchronousReader.hpp -rw-r--r-- root/root 5879 2016-05-27 16:36 ./usr/include/libmaus2/aio/AsynchronousWriter.hpp -rw-r--r-- root/root 17681 2016-05-27 16:36 ./usr/include/libmaus2/aio/BlockSynchronousOutputBuffer8.hpp -rw-r--r-- root/root 1801 2016-05-27 16:36 ./usr/include/libmaus2/aio/Buffer.hpp -rw-r--r-- root/root 8717 2016-05-27 16:36 ./usr/include/libmaus2/aio/BufferedOutput.hpp -rw-r--r-- root/root 6776 2016-05-27 16:36 ./usr/include/libmaus2/aio/CheckedInputOutputStream.hpp -rw-r--r-- root/root 5739 2016-05-27 16:36 ./usr/include/libmaus2/aio/CheckedInputStream.hpp -rw-r--r-- root/root 2501 2016-05-27 16:36 ./usr/include/libmaus2/aio/CheckedInputStreamAtOffset.hpp -rw-r--r-- root/root 3475 2016-05-27 16:36 ./usr/include/libmaus2/aio/CheckedOutputStream.hpp -rw-r--r-- root/root 11294 2016-05-27 16:36 ./usr/include/libmaus2/aio/CircularBuffer.hpp -rw-r--r-- root/root 15933 2016-05-27 16:36 ./usr/include/libmaus2/aio/CircularWrapper.hpp -rw-r--r-- root/root 7422 2016-05-27 16:36 ./usr/include/libmaus2/aio/CompactDecoder4.hpp -rw-r--r-- root/root 2372 2016-05-27 16:36 ./usr/include/libmaus2/aio/CompactEncoder4.hpp -rw-r--r-- root/root 1493 2016-05-27 16:36 ./usr/include/libmaus2/aio/ConcatInputStream.hpp -rw-r--r-- root/root 8646 2016-05-27 16:36 ./usr/include/libmaus2/aio/ConcatInputStreamBuffer.hpp -rw-r--r-- root/root 7311 2016-05-27 16:36 ./usr/include/libmaus2/aio/FileFragment.hpp -rw-r--r-- root/root 1196 2016-05-27 16:36 ./usr/include/libmaus2/aio/FileRemoval.hpp -rw-r--r-- root/root 4487 2016-05-27 16:36 ./usr/include/libmaus2/aio/GenericInput.hpp -rw-r--r-- root/root 4270 2016-05-27 16:36 ./usr/include/libmaus2/aio/GenericOutput.hpp -rw-r--r-- root/root 1936 2016-05-27 16:36 ./usr/include/libmaus2/aio/GetLength.hpp -rw-r--r-- root/root 1832 2016-05-27 16:36 ./usr/include/libmaus2/aio/IStreamWrapper.hpp -rw-r--r-- root/root 1636 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputOutputStream.hpp -rw-r--r-- root/root 1505 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputOutputStreamFactory.hpp -rw-r--r-- root/root 6156 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputOutputStreamFactoryContainer.hpp -rw-r--r-- root/root 1748 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputOutputStreamWrapper.hpp -rw-r--r-- root/root 1534 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStream.hpp -rw-r--r-- root/root 1599 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStreamFactory.hpp -rw-r--r-- root/root 6742 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStreamFactoryContainer.hpp -rw-r--r-- root/root 1945 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStreamInstance.hpp -rw-r--r-- root/root 2282 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStreamInstanceAtOffset.hpp -rw-r--r-- root/root 1299 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStreamPointerWrapper.hpp -rw-r--r-- root/root 1724 2016-05-27 16:36 ./usr/include/libmaus2/aio/InputStreamWrapper.hpp -rw-r--r-- root/root 2381 2016-05-27 16:36 ./usr/include/libmaus2/aio/IsKnownLocalFileSystem.hpp -rw-r--r-- root/root 1973 2016-05-27 16:36 ./usr/include/libmaus2/aio/LimitedGenericInput.hpp -rw-r--r-- root/root 1991 2016-05-27 16:36 ./usr/include/libmaus2/aio/LimitedSynchronousGenericInput.hpp -rw-r--r-- root/root 2106 2016-05-27 16:36 ./usr/include/libmaus2/aio/LineSplittingPosixFdOutputStream.hpp -rw-r--r-- root/root 6160 2016-05-27 16:36 ./usr/include/libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp -rw-r--r-- root/root 1842 2016-05-27 16:36 ./usr/include/libmaus2/aio/LinuxStreamingPosixFdOutputStream.hpp -rw-r--r-- root/root 5955 2016-05-27 16:36 ./usr/include/libmaus2/aio/LinuxStreamingPosixFdOutputStreamBuffer.hpp -rw-r--r-- root/root 2009 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemInBuffer.hpp -rw-r--r-- root/root 1704 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemOutBuffer.hpp -rw-r--r-- root/root 6607 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryFile.hpp -rw-r--r-- root/root 3484 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryFileAdapter.hpp -rw-r--r-- root/root 4362 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryFileContainer.hpp -rw-r--r-- root/root 1533 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryInputOutputStream.hpp -rw-r--r-- root/root 7972 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryInputOutputStreamBuffer.hpp -rw-r--r-- root/root 2146 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryInputOutputStreamFactory.hpp -rw-r--r-- root/root 1482 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryInputStream.hpp -rw-r--r-- root/root 6567 2016-05-27 16:36 ./usr/include/libmaus2/aio/MemoryInputStreamBuffer.hpp -rw-r--r-- root/root 2145 2016-05-27 16:36 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16:36 ./usr/include/libmaus2/util/unique_ptr.hpp -rw-r--r-- root/root 1847 2016-05-27 16:36 ./usr/include/libmaus2/util/unordered_map.hpp -rw-r--r-- root/root 1824 2016-05-27 16:36 ./usr/include/libmaus2/util/unordered_set.hpp -rw-r--r-- root/root 11256 2016-05-27 16:36 ./usr/include/libmaus2/util/utf8.hpp drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/ -rw-r--r-- root/root 9230 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp -rw-r--r-- root/root 10986 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/DynamicWaveletTree.hpp -rw-r--r-- root/root 5116 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/ExternalWaveletGenerator.hpp -rw-r--r-- root/root 38935 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/HuffmanWaveletTree.hpp -rw-r--r-- root/root 36664 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp -rw-r--r-- root/root 4185 2016-05-27 16:36 ./usr/include/libmaus2/wavelet/ImpExternalWaveletGenerator.hpp 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-> libmaus2_simd_align_256.so.2.0.195 -rw-r--r-- root/root 233228 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2digests.a -rw-r--r-- root/root 89180 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2digests_sse4.a -rw-r--r-- root/root 2142 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2lsf.a lrwxrwxrwx root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/libmaus2lsf.so -> libmaus2lsf.so.2.0.195 -rw-r--r-- root/root 11280456 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2seqchksumsfactory.a drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 391 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2.pc -rw-r--r-- root/root 337 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2digests.pc -rw-r--r-- root/root 260 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2lsf.pc -rw-r--r-- root/root 356 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/pkgconfig/libmaus2seqchksumsfactory.pc drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/share/ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-27 16:37 ./usr/share/doc/libmaus2-dev/ -rw-r--r-- root/root 2917 2016-05-27 16:02 ./usr/share/doc/libmaus2-dev/changelog.Debian.gz -rw-r--r-- root/root 15652 2016-05-27 16:02 ./usr/share/doc/libmaus2-dev/copyright libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1_amd64.deb ─────────────────────────────────────────────────────────── new debian package, version 2.0. size 1304714 bytes: control archive=1318 bytes. 982 bytes, 20 lines control 834 bytes, 10 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 165 bytes, 4 lines shlibs Package: libmaus2 Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 Architecture: amd64 Maintainer: German Tischler Installed-Size: 5053 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libgnutls-deb0-28 (>= 3.3.0), libgomp1 (>= 4.9), liblzma5 (>= 5.1.1alpha+20120614), libnettle6, libsnappy1v5, libstdc++6 (>= 5.2), staden-io-lib-trunk Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/gt1/libmaus2 Description: libmaus2 is a collection of data structures and algorithms libmaus2 contains a collection of data structures and algorithms, many of which have applications in bio-informatics. In particular this includes . - I/O classes (single byte and UTF-8) - bitio classes (input, output and various forms of bit level manipulation) - text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) - BAM sequence alignment files input/output (simple and collating) . and many lower level support classes. drwxr-xr-x root/root 0 2016-05-27 16:37 ./ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/lib/ drwxr-xr-x root/root 0 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/libmaus2.so.2 -> libmaus2.so.2.0.195 -rw-r--r-- root/root 4506304 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2.so.2.0.195 drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/libmaus2/ drwxr-xr-x root/root 0 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/ -rw-r--r-- root/root 412296 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_consensus_mod.so -rw-r--r-- root/root 14384 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2/2.0.195/libmaus2_scram_mod.so lrwxrwxrwx root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2 -> libmaus2_simd_align_128.so.2.0.195 -rw-r--r-- root/root 76152 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_128.so.2.0.195 lrwxrwxrwx root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2 -> libmaus2_simd_align_256.so.2.0.195 -rw-r--r-- root/root 100728 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2_simd_align_256.so.2.0.195 lrwxrwxrwx root/root 0 2016-05-27 16:36 ./usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2 -> libmaus2lsf.so.2.0.195 -rw-r--r-- root/root 5912 2016-05-27 16:37 ./usr/lib/x86_64-linux-gnu/libmaus2lsf.so.2.0.195 drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/share/ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-05-27 16:37 ./usr/share/doc/libmaus2/ -rw-r--r-- root/root 2917 2016-05-27 16:02 ./usr/share/doc/libmaus2/changelog.Debian.gz -rw-r--r-- root/root 15111 2016-05-27 16:36 ./usr/share/doc/libmaus2/changelog.gz -rw-r--r-- root/root 15652 2016-05-27 16:02 ./usr/share/doc/libmaus2/copyright drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-05-27 16:36 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 59 2016-05-27 16:02 ./usr/share/lintian/overrides/libmaus2 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 2180168 Build-Time: 1899 Distribution: wily Host Architecture: amd64 Install-Time: 18 Job: libmaus2_2.0.195-1+342+201605271602~ubuntu15.10.1.dsc Machine Architecture: amd64 Package: libmaus2 Package-Time: 1919 Source-Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 Space: 2180168 Status: successful Version: 2.0.195-1+342+201605271602~ubuntu15.10.1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160527-1637 Build needed 00:31:59, 2180168k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9819445'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9819445/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9819445'] Unmounting chroot for build PACKAGEBUILD-9819445... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9819445'] Removing build PACKAGEBUILD-9819445