--- adegenet-2.1.2.orig/debian/changelog +++ adegenet-2.1.2/debian/changelog @@ -0,0 +1,126 @@ +adegenet (2.1.2-1cran1ppabionic0) bionic; urgency=medium + + * Compilation for Ubuntu 18.04.3 LTS + * Build for c2d4u for R 3.5.0 + + -- Michael Rutter Wed, 29 Jan 2020 05:40:51 +0000 + +adegenet (2.1.2-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Tue, 28 Jan 2020 11:01:05 -0500 + + +adegenet (2.1.1-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 03 Feb 2018 10:58:29 -0500 + + +adegenet (2.1.0-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 14 Oct 2017 15:34:33 -0400 + + +adegenet (2.0.1-1cran2) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 22 Oct 2016 20:54:16 -0400 + + +adegenet (2.0.1-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 20 Feb 2016 11:08:21 -0500 + + +adegenet (2.0.0-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 18 Jul 2015 17:34:14 -0400 + + +adegenet (1.4-2-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Mon, 19 May 2014 09:38:09 -0400 + + +adegenet (1.4-1-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sun, 23 Mar 2014 10:20:48 -0400 + + +adegenet (1.4-0-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 15 Mar 2014 10:01:44 -0400 + + +adegenet (1.3-9.2-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 07 Sep 2013 21:51:32 -0400 + + +adegenet (1.3-9-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Tue, 25 Jun 2013 09:03:13 -0400 + + +adegenet (1.3-7-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Tue, 07 May 2013 11:55:43 -0400 + + +adegenet (1.3-6-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Wed, 13 Feb 2013 20:45:28 -0500 + + +adegenet (1.3-5-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Sat, 17 Nov 2012 13:40:07 -0500 + + +adegenet (1.3-4-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Mon, 14 May 2012 16:36:35 -0400 + + +adegenet (1.3-0-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Thu, 14 Jul 2011 12:12:51 -0400 + + +adegenet (1.2-8-1cran1) testing; urgency=low + + * cran2deb svn: 362M with DB version 1. + + -- cran2deb4ubuntu Thu, 16 Jun 2011 10:49:31 -0400 + + --- adegenet-2.1.2.orig/debian/compat +++ adegenet-2.1.2/debian/compat @@ -0,0 +1 @@ +7 \ No newline at end of file --- adegenet-2.1.2.orig/debian/control +++ adegenet-2.1.2/debian/control @@ -0,0 +1,37 @@ +Source: adegenet +Section: gnu-r +Priority: optional +Maintainer: cran2deb4ubuntu +Build-Depends: r-base-dev, r-cran-ade4, r-cran-mass, r-cran-igraph, + r-cran-ape, r-cran-shiny, r-cran-ggplot2, r-cran-seqinr, r-cran-spdep, + r-cran-boot, r-cran-reshape2, r-cran-dplyr, r-cran-vegan, xvfb, xauth, + xfonts-base, r-base-core, debhelper (>> 4.1.0), cdbs +Standards-Version: 3.9.1 +Homepage: https://github.com/thibautjombart/adegenet + +Package: r-cran-adegenet +Architecture: any +Depends: r-base-core, r-cran-ade4, r-cran-mass, r-cran-igraph, + r-cran-ape, r-cran-shiny, r-cran-ggplot2, r-cran-seqinr, r-cran-spdep, + r-cran-boot, r-cran-reshape2, r-cran-dplyr, r-cran-vegan, + ${shlibs:Depends} +Description: GNU R package "Exploratory Analysis of Genetic and Genomic + Data" + . + Toolset for the exploration of genetic and genomic data. Adegenet + provides formal (S4) classes for storing and handling various genetic + data, including genetic markers with varying ploidy and hierarchical + population structure ('genind' class), alleles counts by populations + ('genpop'), and genome-wide SNP data ('genlight'). It also implements + original multivariate methods (DAPC, sPCA), graphics, statistical + tests, simulation tools, distance and similarity measures, and several + spatial methods. A range of both empirical and simulated datasets is + also provided to illustrate various methods. + . + Author: Thibaut Jombart, Zhian N. Kamvar, Caitlin Collins, Roman + Lustrik, Marie- Pauline Beugin, Brian J. Knaus, Peter Solymos, + Vladimir Mikryukov, Klaus Schliep, Tiago Maié, Libor Morkovsky, + Ismail Ahmed, Anne Cori, Federico Calboli, RJ Ewing, Frédéric + Michaud, Rebecca DeCamp + . + Maintainer: Zhian N. Kamvar --- adegenet-2.1.2.orig/debian/copyright +++ adegenet-2.1.2/debian/copyright @@ -0,0 +1,22 @@ +This Debian package of the GNU R package adegenet was generated +automatically using cran2deb4ubuntu by cran2deb4ubuntu +. + +The original GNU R package is Copyright (C) 2020 Thibaut Jombart, Zhian +N. Kamvar, Caitlin Collins, Roman Lustrik, Marie- Pauline Beugin, Brian +J. Knaus, Peter Solymos, Vladimir Mikryukov, Klaus Schliep, Tiago Maié, +Libor Morkovsky, Ismail Ahmed, Anne Cori, Federico Calboli, RJ Ewing, +Frédéric Michaud, Rebecca DeCamp and possibly others. + +The original GNU R package is maintained by Zhian N. Kamvar + and was obtained from: + +http://cran.r-project.org/src/contrib + +The GNU R package DESCRIPTION offers a Copyright licenses under the +terms of the license: GPL (>= 2) . On a Debian GNU/Linux system, +common licenses are included in the directory +/usr/share/common-licenses/. + +The DESCRIPTION file for the original GNU R package can be found in +/usr/lib/R/site-library/r-cran-adegenet/DESCRIPTION --- adegenet-2.1.2.orig/debian/rules +++ adegenet-2.1.2/debian/rules @@ -0,0 +1,3 @@ +#!/usr/bin/make -f +debRreposname := cran +include /usr/share/R/debian/r-cran.mk