RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '817fd17f3f50f46b193abd8857aef625795e58e7', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Synching the system clock with the buildd NTP service... 29 Jun 05:48:58 ntpdate[3371]: step time server 10.211.37.1 offset -1926515.664349 sec Unpacking chroot for build 817fd17f3f50f46b193abd8857aef625795e58e7 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '817fd17f3f50f46b193abd8857aef625795e58e7'] Mounting chroot for build 817fd17f3f50f46b193abd8857aef625795e58e7 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '817fd17f3f50f46b193abd8857aef625795e58e7', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-817fd17f3f50f46b193abd8857aef625795e58e7 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '817fd17f3f50f46b193abd8857aef625795e58e7', 'i386'] Updating debian chroot for build 817fd17f3f50f46b193abd8857aef625795e58e7 Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Get:5 http://ftpmaster.internal precise-security Release [49.6 kB] Get:6 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:7 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:8 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:9 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:10 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:11 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:12 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:13 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:14 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:15 http://ftpmaster.internal precise-security/main i386 Packages [50.8 kB] Get:16 http://ftpmaster.internal precise-security/restricted i386 Packages [14 B] Get:17 http://ftpmaster.internal precise-security/universe i386 Packages [11.6 kB] Get:18 http://ftpmaster.internal precise-security/multiverse i386 Packages [1393 B] Get:19 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:20 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:21 http://ftpmaster.internal precise-security/restricted TranslationIndex [70 B] Get:22 http://ftpmaster.internal precise-security/universe TranslationIndex [72 B] Get:23 http://ftpmaster.internal precise-updates/main i386 Packages [238 kB] Get:24 http://ftpmaster.internal precise-updates/restricted i386 Packages [2439 B] Get:25 http://ftpmaster.internal precise-updates/universe i386 Packages [61.1 kB] Get:26 http://ftpmaster.internal precise-updates/multiverse i386 Packages [2046 B] Get:27 http://ftpmaster.internal precise-updates/main TranslationIndex [74 B] Get:28 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [71 B] Get:29 http://ftpmaster.internal precise-updates/restricted TranslationIndex [71 B] Get:30 http://ftpmaster.internal precise-updates/universe TranslationIndex [73 B] Get:31 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:32 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:33 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:34 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:35 http://ftpmaster.internal precise-security/main Translation-en [25.3 kB] Get:36 http://ftpmaster.internal precise-security/multiverse Translation-en [587 B] Get:37 http://ftpmaster.internal precise-security/restricted Translation-en [14 B] Get:38 http://ftpmaster.internal precise-security/universe Translation-en [8506 B] Get:39 http://ftpmaster.internal precise-updates/main Translation-en [111 kB] Get:40 http://ftpmaster.internal precise-updates/multiverse Translation-en [912 B] Get:41 http://ftpmaster.internal precise-updates/restricted Translation-en [798 B] Get:42 http://ftpmaster.internal precise-updates/universe Translation-en [36.6 kB] Fetched 11.1 MB in 8s (1364 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: libgcrypt11 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libsasl2-2 libssl1.0.0 libtasn1-3 linux-libc-dev openssl upstart 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3645 kB of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! libssl1.0.0 libgcrypt11 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libtasn1-3 upstart linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.2 [1002 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.1 [77.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.1 [120 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-updates/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.1 [366 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-updates/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.1 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main linux-libc-dev i386 3.2.0-24.39 [831 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.2 [519 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3645 kB in 0s (13.5 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.2_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.1_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.1_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.1_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.1_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-24.39_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.2_i386.deb) ... Unpacking replacement openssl ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.1) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.1) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.1) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.1) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up linux-libc-dev (3.2.0-24.39) ... Setting up openssl (1.0.1-4ubuntu5.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '817fd17f3f50f46b193abd8857aef625795e58e7', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'arb_5.3-3ubuntu3.dsc'] Initiating build 817fd17f3f50f46b193abd8857aef625795e58e7 with 2 processor cores. Automatic build of arb_5.3-3ubuntu3 on iridium by sbuild/i386 1.170.5 Build started at 20120606-2241 ****************************************************************************** arb_5.3-3ubuntu3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: chrpath, debhelper (>= 8), dpkg-dev (>= 1.15.4), freeglut3-dev | libglu-dev, bioperl, libglew1.5-dev, libglw1-mesa-dev, libmotif-dev (>= 2.3.3), libpng12-dev, libtiff4-dev, libxaw7-dev, libxml2-utils, libxpm-dev, lynx, time, xsltproc, xutils-dev Checking for already installed source dependencies... chrpath: missing debhelper: missing dpkg-dev: already installed (1.16.1.2ubuntu7 >= 1.15.4 is satisfied) freeglut3-dev: missing libglu-dev: missing bioperl: missing libglew1.5-dev: missing libglw1-mesa-dev: missing libmotif-dev: missing libpng12-dev: missing libtiff4-dev: missing libxaw7-dev: missing libxml2-utils: missing libxpm-dev: missing lynx: missing time: missing xsltproc: missing xutils-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install chrpath debhelper freeglut3-dev bioperl libglew1.5-dev libglw1-mesa-dev libmotif-dev libpng12-dev libtiff4-dev libxaw7-dev libxml2-utils libxpm-dev lynx time xsltproc xutils-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file fontconfig-config freeglut3 gettext gettext-base groff-base html2text intltool-debian libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libdrm-dev libexpat1 libfontconfig1 libfreetype6 libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew1.5 libglu1-mesa libglu1-mesa-dev libglw1-mesa libice-dev libice6 libio-string-perl libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkms1 libmagic1 libmotif4 libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtiff4 libtiffxx0c2 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxml2 libxmu-dev libxmu-headers libxmu6 libxp6 libxpm4 libxrender1 libxslt1.1 libxt-dev libxt6 libxxf86vm1 lynx-cur man-db mesa-common-dev po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff curl wget libmath-random-perl libxml-sax-expatxs-perl glew-utils1.5 libxcb-doc less www-browser libmail-box-perl Recommended packages: bioperl-run perl-doc libhttp-message-perl libwww-perl libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl liburi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libxml-libxslt-perl libmldbm-perl libgl1-mesa-dri libx11-doc xml-core mime-support libmail-sendmail-perl The following NEW packages will be installed: bioperl bsdmainutils chrpath debhelper dh-apparmor file fontconfig-config freeglut3 freeglut3-dev gettext gettext-base groff-base html2text intltool-debian libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libdrm-dev libexpat1 libfontconfig1 libfreetype6 libgettextpo0 libgl1-mesa-dev libgl1-mesa-glx libglapi-mesa libglew1.5 libglew1.5-dev libglu1-mesa libglu1-mesa-dev libglw1-mesa libglw1-mesa-dev libice-dev libice6 libio-string-perl libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkms1 libmagic1 libmotif-dev libmotif4 libpipeline1 libpng12-dev libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtiff4 libtiff4-dev libtiffxx0c2 libunistring0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxaw7-dev libxcb-glx0 libxcb1 libxcb1-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxp6 libxpm-dev libxpm4 libxrender1 libxslt1.1 libxt-dev libxt6 libxxf86vm1 lynx lynx-cur man-db mesa-common-dev po-debconf time ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-xext-dev xorg-sgml-doctools xsltproc xtrans-dev xutils-dev zlib1g-dev 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After this operation, 87.3 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libbsd0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libcroco3 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libunistring0 libgettextpo0 libglapi-mesa libx11-xcb1 libxcb-glx0 libxdamage1 libxfixes3 libxxf86vm1 libgl1-mesa-glx x11-common libice6 libjpeg-turbo8 libkms1 libsm6 libjpeg8 libtiff4 libtiffxx0c2 libxt6 libxmu6 libxpm4 libxaw7 libxrender1 libxft2 libxp6 libxslt1.1 libglu1-mesa libmotif4 libmagic1 file bsdmainutils gettext-base groff-base man-db time libio-string-perl libdata-stag-perl libbio-perl-perl bioperl chrpath html2text gettext intltool-debian po-debconf dh-apparmor debhelper freeglut3 xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev libdrm-dev mesa-common-dev x11proto-xext-dev libxext-dev libgl1-mesa-dev libglu1-mesa-dev libice-dev libsm-dev libxt-dev freeglut3-dev libglew1.5 libglew1.5-dev libglw1-mesa libglw1-mesa-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev zlib1g-dev libpng12-dev libtiff4-dev libxmu-headers libxmu-dev libxpm-dev libxaw7-dev libxml2-utils x11proto-print-dev xsltproc xutils-dev libmotif-dev lynx-cur lynx Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 i386 2.0.1-7.2ubuntu1 [130 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libbsd0 i386 0.3.0-2 [31.9 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-4 [8344 B] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-4 [13.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.8.1-1 [48.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.99.1-0ubuntu2 [770 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxext6 i386 2:1.3.0-3build1 [33.7 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.8-1ubuntu2 [345 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core all 2.33-2ubuntu1 [1552 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config all 2.8.0-3ubuntu9 [44.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 i386 2.8.0-3ubuntu9 [125 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libglapi-mesa i386 8.0.2-0ubuntu3.1 [20.9 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libx11-xcb1 i386 2:1.4.99.1-0ubuntu2 [10.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libxcb-glx0 i386 1.8.1-1 [28.3 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libxdamage1 i386 1:1.1.3-2build1 [7390 B] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libxfixes3 i386 1:5.0-4ubuntu4 [12.4 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxxf86vm1 i386 1:1.1.1-2build1 [11.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main libgl1-mesa-glx i386 8.0.2-0ubuntu3.1 [103 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main x11-common all 1:7.6+12ubuntu1 [57.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libice6 i386 2:1.0.7-2build1 [44.7 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu4 [117 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libkms1 i386 2.4.32-1ubuntu1 [9692 B] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libsm6 i386 2:1.2.0-2build1 [17.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu7 [2112 B] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libtiff4 i386 3.9.5-2ubuntu1 [142 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libtiffxx0c2 i386 3.9.5-2ubuntu1 [6764 B] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libxt6 i386 1:1.1.1-2build1 [180 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libxmu6 i386 2:1.1.0-3 [52.4 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libxpm4 i386 1:3.5.9-4 [37.4 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libxaw7 i386 2:1.0.9-3ubuntu1 [201 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 i386 1:0.9.6-2build1 [20.0 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libxft2 i386 2.2.0-3ubuntu2 [42.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libxp6 i386 1:1.0.1-2 [18.0 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libxslt1.1 i386 1.1.26-8ubuntu1 [164 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise-updates/main libglu1-mesa i386 8.0.2-0ubuntu3.1 [165 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/multiverse libmotif4 i386 2.3.3-5ubuntu1 [1302 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main time i386 1.7-23.1 [29.6 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libio-string-perl all 1.08-2 [12.0 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/universe libdata-stag-perl all 0.11-2 [505 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/universe libbio-perl-perl all 1.6.901-2 [6098 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/universe bioperl all 1.6.901-2 [439 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main chrpath i386 0.13-2build2 [13.8 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main dh-apparmor all 2.7.102-0ubuntu3 [9622 B] Get:61 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main freeglut3 i386 2.6.0-1ubuntu2 [77.5 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev i386 1:1.0.6-4 [10.2 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev i386 1:1.1.0-4 [26.5 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev all 2.1.99.6-1 [133 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev all 1.0.5-2 [27.6 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 i386 0.3-3 [3264 B] Get:71 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev i386 0.3-3 [2860 B] Get:72 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev i386 1.8.1-1 [82.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev i386 2:1.4.99.1-0ubuntu2 [894 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libdrm-dev i386 2.4.32-1ubuntu1 [178 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise-updates/main mesa-common-dev i386 8.0.2-0ubuntu3.1 [242 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev all 7.2.0-3 [253 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev i386 2:1.3.0-3build1 [150 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise-updates/main libgl1-mesa-dev i386 8.0.2-0ubuntu3.1 [5000 B] Get:79 http://ftpmaster.internal/ubuntu/ precise-updates/main libglu1-mesa-dev i386 8.0.2-0ubuntu3.1 [191 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/main libice-dev i386 2:1.0.7-2build1 [130 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev i386 2:1.2.0-2build1 [88.3 kB] Get:82 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev i386 1:1.1.1-2build1 [472 kB] Get:83 http://ftpmaster.internal/ubuntu/ precise/main freeglut3-dev i386 2.6.0-1ubuntu2 [146 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise/main libglew1.5 i386 1.5.7.is.1.5.2-1ubuntu4 [93.0 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/main libglew1.5-dev i386 1.5.7.is.1.5.2-1ubuntu4 [199 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/universe libglw1-mesa i386 7.4-0ubuntu2 [29.9 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise/universe libglw1-mesa-dev i386 7.4-0ubuntu2 [30.2 kB] Get:88 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8-dev i386 1.1.90+svn733-0ubuntu4 [413 kB] Get:89 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8-dev i386 8c-2ubuntu7 [1544 B] Get:90 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:91 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] Get:92 http://ftpmaster.internal/ubuntu/ precise/main libpng12-dev i386 1.2.46-3ubuntu4 [207 kB] Get:93 http://ftpmaster.internal/ubuntu/ precise/main libtiff4-dev i386 3.9.5-2ubuntu1 [278 kB] Get:94 http://ftpmaster.internal/ubuntu/ precise/main libxmu-headers all 2:1.1.0-3 [56.4 kB] Get:95 http://ftpmaster.internal/ubuntu/ precise/main libxmu-dev i386 2:1.1.0-3 [58.2 kB] Get:96 http://ftpmaster.internal/ubuntu/ precise/main libxpm-dev i386 1:3.5.9-4 [93.9 kB] Get:97 http://ftpmaster.internal/ubuntu/ precise/main libxaw7-dev i386 2:1.0.9-3ubuntu1 [442 kB] Get:98 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2-utils i386 2.7.8.dfsg-5.1ubuntu4.1 [38.0 kB] Get:99 http://ftpmaster.internal/ubuntu/ precise/main x11proto-print-dev all 1.0.5-2 [10.7 kB] Get:100 http://ftpmaster.internal/ubuntu/ precise/main xsltproc i386 1.1.26-8ubuntu1 [14.4 kB] Get:101 http://ftpmaster.internal/ubuntu/ precise/main xutils-dev i386 1:7.7~1 [319 kB] Get:102 http://ftpmaster.internal/ubuntu/ precise/multiverse libmotif-dev i386 2.3.3-5ubuntu1 [2920 kB] Get:103 http://ftpmaster.internal/ubuntu/ precise/main lynx-cur i386 2.8.8dev.9-2 [1026 kB] Get:104 http://ftpmaster.internal/ubuntu/ precise/main lynx all 2.8.8dev.9-2 [3918 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.8 MB in 2s (10.8 MB/s) Selecting previously unselected package libexpat1. 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Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Mar 2 11:33:35 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./arb_5.3-3ubuntu3.dsc dpkg-source: info: extracting arb in arb-5.3 dpkg-source: info: unpacking arb_5.3.orig.tar.gz dpkg-source: info: unpacking arb_5.3-3ubuntu3.debian.tar.gz dpkg-source: info: applying 30_phyml dpkg-source: info: applying 20_config.makefiles dpkg-source: info: applying 30_Makefile_main dpkg-source: info: applying 20_Makefiles dpkg-source: info: applying 20_tmpfile_issue.patch dpkg-source: info: applying tmpfile_CVE-2008-5378.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package arb dpkg-buildpackage: source version 5.3-3ubuntu3 dpkg-source --before-build arb-5.3 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/arb-5.3' # Make does only work if config.makefile exists which is only the # case when quilt has installed the patches. So there is neither # a need nor the expection of success if config.makefile is missing [ ! -f config.makefile ] || /usr/bin/make DEBIAN=1 ARBHOME=/build/buildd/arb-5.3 clean make[2]: Entering directory `/build/buildd/arb-5.3' SOURCE_TOOLS/generate_all_links.sh make[3]: Entering directory `/build/buildd/arb-5.3/bin' find . -type l -exec rm {} \; ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` . make[3]: Leaving directory `/build/buildd/arb-5.3/bin' generate_all_links.sh done. touch SOURCE_TOOLS/generate_all_links.stamp /usr/bin/make clean2 make[3]: Entering directory `/build/buildd/arb-5.3' make[4]: Entering directory `/build/buildd/arb-5.3/PROBE' rm -f PT_new_design.o PT_family.o PT_prefixtree.o PT_main.o PT_io.o PT_etc.o PT_secundaer.o PT_buildtree.o PT_match.o PT_findEx.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/PROBE' make[4]: Entering directory `/build/buildd/arb-5.3/AISC' rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc make[4]: Leaving directory `/build/buildd/arb-5.3/AISC' make[4]: Entering directory `/build/buildd/arb-5.3/AISC_MKPTPS' rm -f mkptypes.o aisc_mkpt make[4]: Leaving directory `/build/buildd/arb-5.3/AISC_MKPTPS' make[4]: Entering directory `/build/buildd/arb-5.3/ALIV3' rm -f a3.o a3_seq.o a3_ptree1.o a3_ptree2.o a3_helix.o a3_darray.o a3_ali.o a3_matrix.o a3_arbdb.o a3_basen.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/ALIV3' make[4]: Entering directory `/build/buildd/arb-5.3/ARBDB' rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o *.a *.so make[4]: Leaving directory `/build/buildd/arb-5.3/ARBDB' make[4]: Entering directory `/build/buildd/arb-5.3/ARBDB2' rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o ad_config.o *.a *.so make[4]: Leaving directory `/build/buildd/arb-5.3/ARBDB2' make[4]: Entering directory `/build/buildd/arb-5.3/ARBDBPP' rm -f adtsequence.o adt_edit.o adtali.o adextended.o adseq.o adspecies.o admain.o adali.o liste.o *.a *.so make[4]: Leaving directory `/build/buildd/arb-5.3/ARBDBPP' make[4]: Entering directory `/build/buildd/arb-5.3/ARBDBS' rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/ARBDBS' make[4]: Entering directory `/build/buildd/arb-5.3/ARB_GDE' rm -f GDE_ParseMenu.o GDE.o GDE_event.o GDE_arbdb_io.o GDE_HGLfile.o GDE_Genbank.o GDE_FileIO.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/ARB_GDE' make[4]: Entering directory `/build/buildd/arb-5.3/AWT' rm -f AWT_input_mask.o AWT_hotkeys.o AWT_www.o AWT_tables.o AWT_irstree.o AWT_asciiprint.o AWT_map_key.o AWT_tree_cmp.o AWT_seq_colors.o AWT_pro_a_nucs.o AWT_csp.o AWT_canvas.o AWT_dtree.o AWT_tree.o AWT_tree_cb.o AWT_nei.o AWT_filter.o AWT_sel_boxes.o AWT_canio.o AWT_nds.o AWT_query_and_functions.o AWT_file_selection.o AWT_preset.o AWT_seq_dna.o AWT_seq_protein.o AWT_seq_simple_pro.o AWT_codon_table.o AWT_iupac.o AWT_config_manager.o AWT_advice.o AWT_db_browser.o AWT_attributes.o AWT_changekey.o AWT_item_sel_list.o AWT_macro.o AWT_translate.o *.a *.so make[4]: Leaving directory `/build/buildd/arb-5.3/AWT' make[4]: Entering directory `/build/buildd/arb-5.3/AWTC' rm -f AWTC_constructSequence.o AWTC_next_neighbours.o AWTC_seq_search.o AWTC_submission.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/AWTC' make[4]: Entering directory `/build/buildd/arb-5.3/AWTI' rm -f AWTI_import.o AWTI_export.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/AWTI' make[4]: Entering directory `/build/buildd/arb-5.3/CONSENSUS_TREE' rm -f CT_part.o CT_hash.o CT_ntree.o CT_rbtree.o CT_dtree.o CT_ctree.o CT_mem.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/CONSENSUS_TREE' make[4]: Entering directory `/build/buildd/arb-5.3/CONVERTALN' rm -f main.o fconv.o mg.o genbank.o macke.o phylip.o paup.o util.o date.o embl.o gcg.o printable.o alma.o routines.o convert.o /build/buildd/arb-5.3/bin/arb_convert_aln make[4]: Leaving directory `/build/buildd/arb-5.3/CONVERTALN' make[4]: Entering directory `/build/buildd/arb-5.3/DBSERVER' rm -f db_server.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/DBSERVER' make[4]: Entering directory `/build/buildd/arb-5.3/DIST' rm -f DI_mldist.o DI_protdist.o DI_compress_matrix.o DI_view_matrix.o DI_save_matr.o DI_main.o DI_matr.o distanalyse.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/DIST' make[4]: Entering directory `/build/buildd/arb-5.3/EDIT' rm -f edit.o edit_naligner.o edit_tools.o ed_conf.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/EDIT' make[4]: Entering directory `/build/buildd/arb-5.3/EDIT4' rm -f ED4_protein_2nd_structure.o ED4_ProteinViewer.o ED4_search.o ED4_cursor.o ED4_dump.o ED4_nds.o ED4_secedit.o ED4_RNA3D.o ED4_main.o ED4_mini_classes.o ED4_edit_string.o ED4_base.o ED4_manager.o ED4_terminal.o ED4_root.o EDB_root_bact.o ED4_window.o ED4_members.o ED4_no_class.o ED4_list.o ED4_text_terminals.o ED4_tools.o ED4_block.o ED4_visualizeSAI.o edit_naligner.o graph_aligner_gui.o ED4_dots.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/EDIT4' make[4]: Entering directory `/build/buildd/arb-5.3/EISPACK' rm -f eispack.o d_sign.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/EISPACK' make[4]: Entering directory `/build/buildd/arb-5.3/GDE' make[5]: Entering directory `/build/buildd/arb-5.3/GDE/CLUSTAL' rm -f clustalv.o amenu.o myers.o sequence.o showpair.o upgma.o util.o trees.o gcgcheck.o /build/buildd/arb-5.3/bin/clustalv make[5]: Leaving directory `/build/buildd/arb-5.3/GDE/CLUSTAL' make[5]: Entering directory `/build/buildd/arb-5.3/GDE/SUPPORT' rm -f /build/buildd/arb-5.3/bin/CAP2 /build/buildd/arb-5.3/bin/Restriction /build/buildd/arb-5.3/bin/Zuk_to_gen /build/buildd/arb-5.3/bin/count /build/buildd/arb-5.3/bin/findall /build/buildd/arb-5.3/bin/lsadt /build/buildd/arb-5.3/bin/sho_helix /build/buildd/arb-5.3/bin/varpos make[5]: Leaving directory `/build/buildd/arb-5.3/GDE/SUPPORT' make[5]: Entering directory `/build/buildd/arb-5.3/GDE/AxML' rm -f axml.o /build/buildd/arb-5.3/bin/axml make[5]: Leaving directory `/build/buildd/arb-5.3/GDE/AxML' make[5]: Entering directory `/build/buildd/arb-5.3/GDE/RAxML' rm -f axml.o raxmlParsimony.o rev_functions.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGeneric.o evaluateGeneric.o newviewGeneric.o makenewzGeneric.o evaluateGenericVector.o categorizeGeneric.o /build/buildd/arb-5.3/bin/raxmlHPC make[5]: Leaving directory `/build/buildd/arb-5.3/GDE/RAxML' make[5]: Entering directory `/build/buildd/arb-5.3/GDE/PHYML' rm -f main.o utilities.o optimiz.o lk.o bionj.o models.o free.o options.o simu.o eigen.o /build/buildd/arb-5.3/bin/phyml make[5]: Leaving directory `/build/buildd/arb-5.3/GDE/PHYML' make[4]: Leaving directory `/build/buildd/arb-5.3/GDE' make[4]: Entering directory `/build/buildd/arb-5.3/GENOM' rm -f GEN_interface.o GEN_map.o GEN_graphic.o GEN_gene.o GEN_nds.o GEN_color_groups.o GEN_translations.o EXP_interface.o EXP_main.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/GENOM' make[4]: Entering directory `/build/buildd/arb-5.3/GENOM_IMPORT' rm -f *.o rm -f *.a rm -f *.bak rm -f *~ rm -f *# rm -f *\% make[4]: Leaving directory `/build/buildd/arb-5.3/GENOM_IMPORT' make[4]: Entering directory `/build/buildd/arb-5.3/GL' make[5]: Entering directory `/build/buildd/arb-5.3/GL/glpng' rm -f glpng.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/GL/glpng' make[5]: Entering directory `/build/buildd/arb-5.3/GL/glAW' rm -f GLwMDrawA.o AW_window_ogl.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/GL/glAW' make[4]: Leaving directory `/build/buildd/arb-5.3/GL' make[4]: Entering directory `/build/buildd/arb-5.3/ISLAND_HOPPING' rm -f island_hopping.o i-hopper.o align.o memory.o trnsprob.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/ISLAND_HOPPING' make[4]: Entering directory `/build/buildd/arb-5.3/MERGE' rm -f MG_checkfield.o MG_main.o MG_trees.o MG_alignment.o MG_species.o MG_extendeds.o MG_names.o MG_gene_species.o MG_configs.o MG_preserves.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/MERGE' make[4]: Entering directory `/build/buildd/arb-5.3/MULTI_PROBE' rm -f MP_main.o MP_Window.o MP_noclass.o MP_sonde.o MP_sondentopf.o MP_mo_liste.o MP_probe.o MP_GenerationDuplicates.o MP_Generation.o MP_probe_combi_statistic.o MP_probe_tabs.o MP_permute.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/MULTI_PROBE' make[4]: Entering directory `/build/buildd/arb-5.3/NALIGNER' rm -f ali_aligner.o ali_arbdb.o ali_global.o ali_main.o ali_pathmap.o ali_prealigner.o ali_profile.o ali_pt.o ali_sequence.o ali_solution.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/NALIGNER' make[4]: Entering directory `/build/buildd/arb-5.3/NAMES' rm -f names.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/NAMES' make[4]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' make[4]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' make[4]: Entering directory `/build/buildd/arb-5.3/NTREE' rm -f AP_consensus.o AP_conservProfile2Gnuplot.o AP_cprofile.o AP_csp_2_gnuplot.o AP_pos_var_pars.o NT_cb.o NT_concatenate.o NT_dbrepair.o NT_edconf.o NT_extern.o NT_import.o NT_ins_col.o NT_join.o NT_main.o NT_sort.o NT_trackAliChanges.o NT_validManual.o NT_validNameParser.o NT_validNames.o ad_ali.o ad_ext.o ad_spec.o ad_transpro.o ad_trees.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/NTREE' make[4]: Entering directory `/build/buildd/arb-5.3/PARSIMONY' rm -f PARS_main.o PARS_dtree.o PARS_debug.o PARS_klprops.o AP_buffer.o AP_main.o AP_tree_nlen.o AP_tree_edge.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/PARSIMONY' make[4]: Entering directory `/build/buildd/arb-5.3/PGT' rm -f main.o dialog.o arb_interface.o main_dialog.o import_dialog.o selection_dialog.o file_import.o tiff_image.o image_dialog.o plot.o analyze_window.o entry_sel_dialog.o config_dialog.o help_dialog.o msgbox.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/PGT' make[4]: Entering directory `/build/buildd/arb-5.3/PHYLO' rm -f PH_data.o PH_root.o PH_main.o PH_filt.o PH_display.o PH_matr.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/PHYLO' make[4]: Entering directory `/build/buildd/arb-5.3/PRIMER_DESIGN' rm -f PRD_Pair.o PRD_Item.o PRD_Node.o PRD_Range.o PRD_SequenceIterator.o PRD_SearchFIFO.o PRD_Design.o primer_design.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/PRIMER_DESIGN' make[4]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' make[4]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' make[4]: Entering directory `/build/buildd/arb-5.3/PROBE_DESIGN' rm -f probe_design.o SaiProbeVisualization.o probe_match_parser.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/PROBE_DESIGN' make[4]: Entering directory `/build/buildd/arb-5.3/PROBE_SET' rm -f ps_node.o ps_filebuffer.o ps_database.o ps_tools.o fb_test.o ps_convert_db.o ps_merge_my_dbs.o ps_detect_weak_differences.o ps_find_probes.o ps_eval_candidates.o ps_get_probes.o ps_my2ascii.o ps_my2asciipaths.o ps_arb2asciipaths.o ps_show_result.o rm -f /build/buildd/arb-5.3/PROBE_SET/bin/ps_show_result /build/buildd/arb-5.3/PROBE_SET/bin/ps_arb2asciipaths /build/buildd/arb-5.3/PROBE_SET/bin/ps_my2asciipaths /build/buildd/arb-5.3/PROBE_SET/bin/ps_my2ascii /build/buildd/arb-5.3/PROBE_SET/bin/ps_get_probes /build/buildd/arb-5.3/PROBE_SET/bin/ps_eval /build/buildd/arb-5.3/PROBE_SET/bin/ps_find /build/buildd/arb-5.3/PROBE_SET/bin/ps_detect /build/buildd/arb-5.3/PROBE_SET/bin/ps_merge /build/buildd/arb-5.3/PROBE_SET/bin/ps_convert /build/buildd/arb-5.3/PROBE_SET/bin/fb_test make[4]: Leaving directory `/build/buildd/arb-5.3/PROBE_SET' make[4]: Entering directory `/build/buildd/arb-5.3/READSEQ' rm -f readseq.o ureadseq.o /build/buildd/arb-5.3/bin/arb_readseq make[4]: Leaving directory `/build/buildd/arb-5.3/READSEQ' make[4]: Entering directory `/build/buildd/arb-5.3/RNA3D' rm -f RNA3D_Main.o RNA3D_Interface.o RNA3D_Graphics.o RNA3D_OpenGLEngine.o RNA3D_OpenGLGraphics.o RNA3D_Textures.o RNA3D_StructureData.o RNA3D_Renderer.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/RNA3D' make[4]: Entering directory `/build/buildd/arb-5.3/SECEDIT' rm -f SEC_toggle.o SEC_bonddef.o SEC_db.o SEC_helix.o SEC_graphic.o SEC_structure.o SEC_read.o SEC_io.o SEC_paint.o SEC_layout.o SEC_split.o SEC_abspos.o SEC_main.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/SECEDIT' make[4]: Entering directory `/build/buildd/arb-5.3/SEQ_QUALITY' rm -f SQ_main.o SQ_functions.o SQ_GroupData.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/SEQ_QUALITY' make[4]: Entering directory `/build/buildd/arb-5.3/SERVERCNTRL' rm -f servercntrl.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/SERVERCNTRL' make[4]: Entering directory `/build/buildd/arb-5.3/SL' make[5]: Entering directory `/build/buildd/arb-5.3/SL/TREE_READ' rm -f TreeRead.o TreeTools.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/TREE_READ' make[5]: Entering directory `/build/buildd/arb-5.3/SL/TREE_WRITE' rm -f TreeWrite.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/TREE_WRITE' make[5]: Entering directory `/build/buildd/arb-5.3/SL/HELIX' rm -f BI_helix.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/HELIX' make[5]: Entering directory `/build/buildd/arb-5.3/SL/AW_HELIX' rm -f AW_helix.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/AW_HELIX' make[5]: Entering directory `/build/buildd/arb-5.3/SL/AW_NAME' rm -f AW_rename.o AW_names_admin.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/AW_NAME' make[5]: Entering directory `/build/buildd/arb-5.3/SL/DB_SCANNER' rm -f db_scanner.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/DB_SCANNER' make[5]: Entering directory `/build/buildd/arb-5.3/SL/FILE_BUFFER' rm -f FileBuffer.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/FILE_BUFFER' make[5]: Entering directory `/build/buildd/arb-5.3/SL/REGEXPR' rm -f RegExpr.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/REGEXPR' make[5]: Entering directory `/build/buildd/arb-5.3/SL/FAST_ALIGNER' rm -f ClustalV.o fast_aligner.o *.a make[5]: Leaving directory `/build/buildd/arb-5.3/SL/FAST_ALIGNER' make[4]: Leaving directory `/build/buildd/arb-5.3/SL' make[4]: Entering directory `/build/buildd/arb-5.3/STAT' rm -f ST_quality.o ST_ml.o ST_window.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/STAT' make[4]: Entering directory `/build/buildd/arb-5.3/TOOLS' rm -f /build/buildd/arb-5.3/bin/arb_2_ascii /build/buildd/arb-5.3/bin/arb_2_bin /build/buildd/arb-5.3/bin/arb_a2ps /build/buildd/arb-5.3/bin/arb_count_chars /build/buildd/arb-5.3/bin/arb_dnarates /build/buildd/arb-5.3/bin/arb_export_rates /build/buildd/arb-5.3/bin/arb_export_tree /build/buildd/arb-5.3/bin/arb_gene_probe /build/buildd/arb-5.3/bin/arb_message /build/buildd/arb-5.3/bin/arb_notify /build/buildd/arb-5.3/bin/arb_primer /build/buildd/arb-5.3/bin/arb_probe /build/buildd/arb-5.3/bin/arb_proto_2_xsub /build/buildd/arb-5.3/bin/arb_read_tree /build/buildd/arb-5.3/bin/arb_replace /build/buildd/arb-5.3/bin/arb_swap_rnastr rm -f arb_2_ascii.o arb_2_bin.o arb_a2ps.o arb_count_chars.o arb_dnarates.o arb_export_rates.o arb_export_tree.o arb_gene_probe.o arb_message.o arb_notify.o arb_primer.o arb_probe.o arb_proto_2_xsub.o arb_read_tree.o arb_replace.o arb_swap_rnastr.o make[4]: Leaving directory `/build/buildd/arb-5.3/TOOLS' make[4]: Entering directory `/build/buildd/arb-5.3/TREEGEN' rm -f base.o defines.o frand.o readcfg.o rns.o sim.o simcfg.o spreadin.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/TREEGEN' make[4]: Entering directory `/build/buildd/arb-5.3/WETC' rm -f WETC_main.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/WETC' make[4]: Entering directory `/build/buildd/arb-5.3/WINDOW' rm -f AW_position.o AW_Xm.o AW_at.o AW_button.o AW_click.o AW_debug.o AW_device.o AW_font_group.o AW_global_awars.o AW_nawar.o AW_preset.o AW_print.o AW_question.o AW_size.o AW_status.o AW_window.o AW_xfig.o AW_xfigfont.o AW_xfont.o AW_xkey.o AW_window_Xm_interface.o *.a *.so make[4]: Leaving directory `/build/buildd/arb-5.3/WINDOW' make[4]: Entering directory `/build/buildd/arb-5.3/XML' rm -f xml.o *.a make[4]: Leaving directory `/build/buildd/arb-5.3/XML' make[4]: Entering directory `/build/buildd/arb-5.3/GDEHELP' rm -f MENUS/align.genmenu MENUS/desoete.genmenu MENUS/dnamlrates.genmenu MENUS/export.genmenu MENUS/fastdnaml.genmenu MENUS/import.genmenu MENUS/inc_fastdnaml.genmenu MENUS/phylip_dist.genmenu MENUS/phylip_dist_org.genmenu MENUS/phylip_help.genmenu MENUS/phylip_ml.genmenu MENUS/phylip_pars.genmenu MENUS/pretty_print.genmenu MENUS/puzzle.genmenu MENUS/raxml.genmenu MENUS/start_arb.genmenu MENUS/warning.genmenu ARB_GDEmenus make[5]: Entering directory `/build/buildd/arb-5.3/GDEHELP' rm -f ./HELP_GEN/*.help rm -f ./HELP_DOC_GEN/*.doc make[5]: Leaving directory `/build/buildd/arb-5.3/GDEHELP' rm -f helpfiles.lst make[4]: Leaving directory `/build/buildd/arb-5.3/GDEHELP' make[4]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' rm -f arb_help2xml.o /build/buildd/arb-5.3/bin/arb_help2xml rm -f `find ../lib/help -name "*.hlp"` rm -f `find ../lib/help_html -name "*.html"` find: `../lib/help_html': No such file or directory rm -f xml.stamp dummy _index.html rm -f `find Xml -name "*.xml"` find: `Xml': No such file or directory /usr/bin/make -C genhelp clean make[5]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE/genhelp' rm -f *.hlp make[5]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE/genhelp' make[4]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' make[4]: Entering directory `/build/buildd/arb-5.3/SOURCE_TOOLS' rm -f generate_all_links.stamp make[4]: Leaving directory `/build/buildd/arb-5.3/SOURCE_TOOLS' make[4]: Entering directory `/build/buildd/arb-5.3/bin' find . -type l -exec rm {} \; find . -type f -perm -100 -exec rm {} \; make[4]: Leaving directory `/build/buildd/arb-5.3/bin' make[4]: Entering directory `/build/buildd/arb-5.3/PERL2ARB' test -f Makefile && /usr/bin/make clean make[4]: [clean] Error 1 (ignored) rm -f Makefile.old proto.h debug.h ARB.c ARB.xs .depends depends.stamp Makefile.PL /build/buildd/arb-5.3/lib/ARB.pm /build/buildd/arb-5.3/lib/ARB.so make[4]: Leaving directory `/build/buildd/arb-5.3/PERL2ARB' rm -f *.last_gcc make[3]: Leaving directory `/build/buildd/arb-5.3' make[2]: Leaving directory `/build/buildd/arb-5.3' # fix broken clean process find . -type f -name "*.a" -delete find . -type f -name "*.o" -delete find . -type f -name "*.so" -delete rm -f `find bin -name "arb*" | grep -v ".pl$"` rm -f `find AWT ARBDBS ARBDB2 EDIT4 LIBLINK MAKEBIN NALIGNER NAMES_COM ORS_COM PROBE PROBE_COM PROBE_SERVER TOOLS bin lib/inputMasks lib/help -type l` find: `ORS_COM': No such file or directory find: `PROBE_SERVER': No such file or directory rm -f `find . -type f -name ".depends"` for dir in GENC GENH O ; do \ rm -rf `find . -name ${dir} -type d` ; \ done rm -f `find bin -maxdepth 1 -type f | grep -v Makefile` rm -f `find PROBE_WEB/CLIENT -name \*.class -type f` find: `PROBE_WEB/CLIENT': No such file or directory rm -f `find PROBE_WEB/CLIENT -name \*.jar -type f` find: `PROBE_WEB/CLIENT': No such file or directory rm -f libXm.so.3 NALIGNER/NALIGNER.com lib/nas/names.dat PERL2ARB/Makefile PERL2ARB/ARB.c HELP_SOURCE/date.xsl lib/arb_tcp.dat lib/ARB.pm *.last_gcc TEMPLATES/arb_build.h GDE/MOLPHY/prot_tml.h PERL2ARB/perlmain.c rm -fr INCLUDE HELP_SOURCE/Xml lib/help lib/help_html PERL5 lib/perl5 PROBE_SERVER/bin PERL2ARB/blib/man3 PROBE_SET/bin for dtc in AISC AISC_MKPTPS SOURCE_TOOLS; do if [ -d ${dtc} ] ; then cd ${dtc}; make clean ; fi; done make[2]: Entering directory `/build/buildd/arb-5.3/AISC' rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc make[2]: Leaving directory `/build/buildd/arb-5.3/AISC' find . -name "*.stamp" -o -name "*.bs" -o -name ".exists" -delete make[1]: Leaving directory `/build/buildd/arb-5.3' dh_clean debian/rules build dh build dh_testdir dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/arb-5.3' mkdir -p LIBLINK MAKEBIN lib/help export LC_ALL=C ; \ export PATH=/build/buildd/arb-5.3/bin:${PATH} ; \ export LD_LIBRARY_PATH=/build/buildd/arb-5.3/lib:${LD_LIBRARY_PATH}; \ /usr/bin/make DEBIAN=1 ARBHOME=/build/buildd/arb-5.3 ARB_64=0 all ; \ export LD_LIBRARY_PATH=/build/buildd/arb-5.3/lib:${LD_LIBRARY_PATH}; \ /usr/bin/make DEBIAN=1 ARBHOME=/build/buildd/arb-5.3 ARB_64=0 arbxtras make[2]: Entering directory `/build/buildd/arb-5.3' All tools needed for ARB compilation have been located. GCC version check: - Your version is '4.6' - Supported gcc version '4.6' detected - fine! /usr/bin/make check_same_GCC_VERSION make[3]: Entering directory `/build/buildd/arb-5.3' /build/buildd/arb-5.3/SOURCE_TOOLS/check_same_gcc_version.pl 4.6 make[3]: Leaving directory `/build/buildd/arb-5.3' Your setup seems to be ok. /usr/bin/make links make[3]: Entering directory `/build/buildd/arb-5.3' SOURCE_TOOLS/generate_all_links.sh make[4]: Entering directory `/build/buildd/arb-5.3/bin' find . -type l -exec rm {} \; ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` . make[4]: Leaving directory `/build/buildd/arb-5.3/bin' generate_all_links.sh done. touch SOURCE_TOOLS/generate_all_links.stamp make[3]: Leaving directory `/build/buildd/arb-5.3' /usr/bin/make com make[3]: Entering directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS make[4]: Entering directory `/build/buildd/arb-5.3/AISC_MKPTPS' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC_MKPTPS -c mkptypes.c gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC_MKPTPS -o aisc_mkpt mkptypes.o make[4]: Leaving directory `/build/buildd/arb-5.3/AISC_MKPTPS' -------------------------------------------------------------------------------- Make everything in AISC make[4]: Entering directory `/build/buildd/arb-5.3/AISC' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_commands.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include aisc_commands.c: In function 'int do_com_next(const char*)': aisc_commands.c:906:21: warning: variable 'p' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_var_ref.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_mix.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -o aisc aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o make[4]: Leaving directory `/build/buildd/arb-5.3/AISC' -------------------------------------------------------------------------------- Make everything in NAMES_COM make[4]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' AISC/Makefile:95: .depends: No such file or directory umask 002;makedepend C/*.c GENC/*.c -I GENH -I C -f- -w1 | grep -v ' /usr' | sed -e 's/^C/O/ig' > .depends_new makedepend: warning: C/aisc_extern.c (reading /usr/include/features.h, line 324): cannot find include file "bits/predefs.h" not in GENH/bits/predefs.h not in C/bits/predefs.h not in /usr/include/bits/predefs.h makedepend: warning: C/aisc_extern.c (reading /usr/include/features.h, line 357): cannot find include file "sys/cdefs.h" not in GENH/sys/cdefs.h not in C/sys/cdefs.h not in /usr/include/sys/cdefs.h makedepend: warning: C/aisc_extern.c (reading /usr/include/features.h, line 389): cannot find include file "gnu/stubs.h" not in GENH/gnu/stubs.h not in C/gnu/stubs.h not in /usr/include/gnu/stubs.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 34): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 36): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/aisc_extern.c (reading /usr/include/_G_config.h, line 9): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/aisc_extern.c (reading /usr/include/_G_config.h, line 15): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 40): cannot find include file "stdarg.h" not in GENH/stdarg.h not in C/stdarg.h not in /usr/include/stdarg.h makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 42): cannot find include file "bits/wchar.h" not in GENH/bits/wchar.h not in C/bits/wchar.h not in /usr/include/bits/wchar.h makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 52): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c (reading /usr/include/libio.h, line 53): cannot find include file "stdarg.h" not in GENH/stdarg.h not in C/stdarg.h not in /usr/include/stdarg.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 165): cannot find include file "bits/stdio_lim.h" not in GENH/bits/stdio_lim.h not in C/bits/stdio_lim.h not in /usr/include/bits/stdio_lim.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 850): cannot find include file "bits/sys_errlist.h" not in GENH/bits/sys_errlist.h not in C/bits/sys_errlist.h not in /usr/include/bits/sys_errlist.h makedepend: warning: C/aisc_extern.c (reading /usr/include/string.h, line 34): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c, line 3: cannot find include file "aisc.h" not in GENH/aisc.h not in C/aisc.h not in /usr/include/aisc.h makedepend: warning: C/aisc_extern.c (reading C/aisc_extern_privat.h, line 19): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 33): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 42): cannot find include file "bits/waitflags.h" not in GENH/bits/waitflags.h not in C/bits/waitflags.h not in /usr/include/bits/waitflags.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 43): cannot find include file "bits/waitstatus.h" not in GENH/bits/waitstatus.h not in C/bits/waitstatus.h not in /usr/include/bits/waitstatus.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 320): cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/client.c (reading /usr/include/alloca.h, line 25): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 203): cannot find include file "bits/posix_opt.h" not in GENH/bits/posix_opt.h not in C/bits/posix_opt.h not in /usr/include/bits/posix_opt.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 218): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 227): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 610): cannot find include file "bits/confname.h" not in GENH/bits/confname.h not in C/bits/confname.h not in /usr/include/bits/confname.h makedepend: warning: C/client.c (reading /usr/include/ctype.h, line 28): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/endian.h, line 37): cannot find include file "bits/endian.h" not in GENH/bits/endian.h not in C/bits/endian.h not in /usr/include/bits/endian.h makedepend: warning: C/client.c (reading /usr/include/endian.h, line 61): cannot find include file "bits/byteswap.h" not in GENH/bits/byteswap.h not in C/bits/byteswap.h not in /usr/include/bits/byteswap.h makedepend: warning: C/client.c (reading /usr/include/errno.h, line 36): cannot find include file "bits/errno.h" not in GENH/bits/errno.h not in C/bits/errno.h not in /usr/include/bits/errno.h makedepend: warning: C/client.c (reading C/ad_varargs.h, line 1): cannot find include file "stdarg.h" not in GENH/stdarg.h not in C/stdarg.h not in /usr/include/stdarg.h makedepend: warning: C/client.c, line 9: cannot find include file "sys/time.h" not in GENH/sys/time.h not in C/sys/time.h not in /usr/include/sys/time.h makedepend: warning: C/client.c, line 10: cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/client.c, line 11: cannot find include file "sys/stat.h" not in GENH/sys/stat.h not in C/sys/stat.h not in /usr/include/sys/stat.h makedepend: warning: C/client.c, line 12: cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/client.c, line 13: cannot find include file "sys/un.h" not in GENH/sys/un.h not in C/sys/un.h not in /usr/include/sys/un.h makedepend: warning: C/client.c (reading /usr/include/stdint.h, line 27): cannot find include file "bits/wchar.h" not in GENH/bits/wchar.h not in C/bits/wchar.h not in /usr/include/bits/wchar.h makedepend: warning: C/client.c (reading /usr/include/stdint.h, line 28): cannot find include file "bits/wordsize.h" not in GENH/bits/wordsize.h not in C/bits/wordsize.h not in /usr/include/bits/wordsize.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 25): cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 26): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 356): cannot find include file "bits/in.h" not in GENH/bits/in.h not in C/bits/in.h not in /usr/include/bits/in.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 376): cannot find include file "bits/byteswap.h" not in GENH/bits/byteswap.h not in C/bits/byteswap.h not in /usr/include/bits/byteswap.h makedepend: warning: C/client.c (reading /usr/include/netinet/tcp.h, line 56): cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/client.c (reading /usr/include/netinet/tcp.h, line 57): cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/client.c (reading /usr/include/netinet/tcp.h), line 119: # error "Adjust your defines" makedepend: warning: C/client.c (reading /usr/include/rpc/netdb.h, line 42): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/netdb.h, line 43): cannot find include file "bits/netdb.h" not in GENH/bits/netdb.h not in C/bits/netdb.h not in /usr/include/bits/netdb.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 33): cannot find include file "bits/sigset.h" not in GENH/bits/sigset.h not in C/bits/sigset.h not in /usr/include/bits/sigset.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 57): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 58): cannot find include file "bits/signum.h" not in GENH/bits/signum.h not in C/bits/signum.h not in /usr/include/bits/signum.h makedepend: warning: C/client.c (reading /usr/include/time.h, line 116): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 79): cannot find include file "bits/siginfo.h" not in GENH/bits/siginfo.h not in C/bits/siginfo.h not in /usr/include/bits/siginfo.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 252): cannot find include file "bits/sigaction.h" not in GENH/bits/sigaction.h not in C/bits/sigaction.h not in /usr/include/bits/sigaction.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 339): cannot find include file "bits/sigcontext.h" not in GENH/bits/sigcontext.h not in C/bits/sigcontext.h not in /usr/include/bits/sigcontext.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 349): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 356): cannot find include file "bits/sigstack.h" not in GENH/bits/sigstack.h not in C/bits/sigstack.h not in /usr/include/bits/sigstack.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 359): cannot find include file "sys/ucontext.h" not in GENH/sys/ucontext.h not in C/sys/ucontext.h not in /usr/include/sys/ucontext.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 394): cannot find include file "bits/pthreadtypes.h" not in GENH/bits/pthreadtypes.h not in C/bits/pthreadtypes.h not in /usr/include/bits/pthreadtypes.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 395): cannot find include file "bits/sigthread.h" not in GENH/bits/sigthread.h not in C/bits/sigthread.h not in /usr/include/bits/sigthread.h makedepend: warning: C/client.c (reading C/client.h, line 22): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: C/debug.c, line 6: cannot find include file "aisc_com.h" not in GENH/aisc_com.h not in C/aisc_com.h not in /usr/include/aisc_com.h makedepend: warning: C/server.c, line 7: cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/server.c, line 8: cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/server.c, line 9: cannot find include file "sys/un.h" not in GENH/sys/un.h not in C/sys/un.h not in /usr/include/sys/un.h makedepend: warning: C/server.c, line 13: cannot find include file "sys/stat.h" not in GENH/sys/stat.h not in C/sys/stat.h not in /usr/include/sys/stat.h makedepend: warning: C/server.c (reading /usr/include/limits.h, line 125): cannot find include file "limits.h" makedepend: warning: C/server.c (reading /usr/include/limits.h, line 145): cannot find include file "bits/posix1_lim.h" not in GENH/bits/posix1_lim.h not in C/bits/posix1_lim.h not in /usr/include/bits/posix1_lim.h makedepend: warning: C/server.c (reading /usr/include/limits.h, line 149): cannot find include file "bits/posix2_lim.h" not in GENH/bits/posix2_lim.h not in C/bits/posix2_lim.h not in /usr/include/bits/posix2_lim.h makedepend: warning: C/server.c, line 30: cannot find include file "sys/time.h" not in GENH/sys/time.h not in C/sys/time.h not in /usr/include/sys/time.h makedepend: warning: C/server.c, line 33: cannot find include file "aisc_com.h" not in aisc_com.h not in C/aisc_com.h not in GENH/aisc_com.h not in C/aisc_com.h not in /usr/include/aisc_com.h makedepend: warning: C/server.c (reading C/server.h, line 22): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h), line 33: # error Neither DEBUG nor NDEBUG is defined! makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h), line 147: # error arb_assert has not been defined -- check ASSERT_xxx definitions makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h, line 183): cannot find include file "arbdb_base.h" not in GENH/arbdb_base.h not in C/arbdb_base.h not in /usr/include/arbdb_base.h makedepend: warning: C/struct_man.c, line 5: cannot find include file "aisc.h" not in aisc.h not in C/aisc.h not in GENH/aisc.h not in C/aisc.h not in /usr/include/aisc.h makedepend: warning: C/struct_man.c (reading C/struct_man.h, line 19): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: cannot open "GENC/*.c" /build/buildd/arb-5.3/SOURCE_TOOLS/mv_if_diff .depends_new .depends .depends created. make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' ../MAKEBIN/aisc AISC/aisc.pa names.aisc GENH/aisc.h ../MAKEBIN/aisc AISC/aisc_com.pa names.aisc GENH/aisc_com.h g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/client.o C/client.c -IGENH -I. -IC g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/debug.o C/debug.c -IGENH -I. -IC rm -f GENH/aisc_server_extern.aisc ../MAKEBIN/aisc_mkpt -a C/aisc_extern.c names_extern.c >GENH/aisc_server_extern.aisc ../MAKEBIN/aisc AISC/aisc_debug_globals.pa names.aisc GENC/aisc_debug_globals.c GENH/aisc_server_extern.aisc GENH/import_proto.h g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_debug_globals.o GENC/aisc_debug_globals.c -IGENH -I. -IC ld -rpath=/usr/lib/arb/lib -r -o client.a O/client.o O/debug.o GENC/aisc_debug_globals.o g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/server.o C/server.c -IGENH -I. -IC g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/struct_man.o C/struct_man.c -IGENH -I. -IC g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/aisc_extern.o C/aisc_extern.c -IGENH -I. -IC ../MAKEBIN/aisc AISC/aisc_server.pa names.aisc GENC/aisc_server.c GENH/aisc_server_extern.aisc GENH/import_proto.h rm -f GENH/aisc_server_proto.h ../MAKEBIN/aisc_mkpt -C GENC/aisc_server.c >GENH/aisc_server_proto.h rm -f GENH/aisc_server_extern.h ../MAKEBIN/aisc_mkpt -C C/aisc_extern.c names_extern.c >GENH/aisc_server_extern.h ../MAKEBIN/aisc AISC/aisc_global.pa names.aisc GENC/aisc_global.c GENH/aisc_server_extern.aisc GENH/import_proto.h g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_global.o GENC/aisc_global.c -IGENH -I. -IC -DAISC_SAVE_YES g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_server.o GENC/aisc_server.c -IGENH -I. -IC -DAISC_SAVE_YES g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o names_extern.o names_extern.c -IGENH -I. -IC -DAISC_SAVE_YES ld -rpath=/usr/lib/arb/lib -r -o server.a O/server.o O/struct_man.o O/aisc_extern.o GENC/aisc_global.o GENC/aisc_server.o names_extern.o make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' make[4]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' -------------------------------------------------------------------------------- Make everything in PROBE_COM make[4]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' AISC/Makefile:95: .depends: No such file or directory umask 002;makedepend C/*.c GENC/*.c -I GENH -I C -f- -w1 | grep -v ' /usr' | sed -e 's/^C/O/ig' > .depends_new makedepend: warning: C/aisc_extern.c (reading /usr/include/features.h, line 324): cannot find include file "bits/predefs.h" not in GENH/bits/predefs.h not in C/bits/predefs.h not in /usr/include/bits/predefs.h makedepend: warning: C/aisc_extern.c (reading /usr/include/features.h, line 357): cannot find include file "sys/cdefs.h" not in GENH/sys/cdefs.h not in C/sys/cdefs.h not in /usr/include/sys/cdefs.h makedepend: warning: C/aisc_extern.c (reading /usr/include/features.h, line 389): cannot find include file "gnu/stubs.h" not in GENH/gnu/stubs.h not in C/gnu/stubs.h not in /usr/include/gnu/stubs.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 34): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 36): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/aisc_extern.c (reading /usr/include/_G_config.h, line 9): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/aisc_extern.c (reading /usr/include/_G_config.h, line 15): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 40): cannot find include file "stdarg.h" not in GENH/stdarg.h not in C/stdarg.h not in /usr/include/stdarg.h makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 42): cannot find include file "bits/wchar.h" not in GENH/bits/wchar.h not in C/bits/wchar.h not in /usr/include/bits/wchar.h makedepend: warning: C/aisc_extern.c (reading /usr/include/wchar.h, line 52): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c (reading /usr/include/libio.h, line 53): cannot find include file "stdarg.h" not in GENH/stdarg.h not in C/stdarg.h not in /usr/include/stdarg.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 165): cannot find include file "bits/stdio_lim.h" not in GENH/bits/stdio_lim.h not in C/bits/stdio_lim.h not in /usr/include/bits/stdio_lim.h makedepend: warning: C/aisc_extern.c (reading /usr/include/stdio.h, line 850): cannot find include file "bits/sys_errlist.h" not in GENH/bits/sys_errlist.h not in C/bits/sys_errlist.h not in /usr/include/bits/sys_errlist.h makedepend: warning: C/aisc_extern.c (reading /usr/include/string.h, line 34): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/aisc_extern.c, line 3: cannot find include file "aisc.h" not in GENH/aisc.h not in C/aisc.h not in /usr/include/aisc.h makedepend: warning: C/aisc_extern.c (reading C/aisc_extern_privat.h, line 19): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 33): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 42): cannot find include file "bits/waitflags.h" not in GENH/bits/waitflags.h not in C/bits/waitflags.h not in /usr/include/bits/waitflags.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 43): cannot find include file "bits/waitstatus.h" not in GENH/bits/waitstatus.h not in C/bits/waitstatus.h not in /usr/include/bits/waitstatus.h makedepend: warning: C/client.c (reading /usr/include/stdlib.h, line 320): cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/client.c (reading /usr/include/alloca.h, line 25): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 203): cannot find include file "bits/posix_opt.h" not in GENH/bits/posix_opt.h not in C/bits/posix_opt.h not in /usr/include/bits/posix_opt.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 218): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 227): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/unistd.h, line 610): cannot find include file "bits/confname.h" not in GENH/bits/confname.h not in C/bits/confname.h not in /usr/include/bits/confname.h makedepend: warning: C/client.c (reading /usr/include/ctype.h, line 28): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/endian.h, line 37): cannot find include file "bits/endian.h" not in GENH/bits/endian.h not in C/bits/endian.h not in /usr/include/bits/endian.h makedepend: warning: C/client.c (reading /usr/include/endian.h, line 61): cannot find include file "bits/byteswap.h" not in GENH/bits/byteswap.h not in C/bits/byteswap.h not in /usr/include/bits/byteswap.h makedepend: warning: C/client.c (reading /usr/include/errno.h, line 36): cannot find include file "bits/errno.h" not in GENH/bits/errno.h not in C/bits/errno.h not in /usr/include/bits/errno.h makedepend: warning: C/client.c (reading C/ad_varargs.h, line 1): cannot find include file "stdarg.h" not in GENH/stdarg.h not in C/stdarg.h not in /usr/include/stdarg.h makedepend: warning: C/client.c, line 9: cannot find include file "sys/time.h" not in GENH/sys/time.h not in C/sys/time.h not in /usr/include/sys/time.h makedepend: warning: C/client.c, line 10: cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/client.c, line 11: cannot find include file "sys/stat.h" not in GENH/sys/stat.h not in C/sys/stat.h not in /usr/include/sys/stat.h makedepend: warning: C/client.c, line 12: cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/client.c, line 13: cannot find include file "sys/un.h" not in GENH/sys/un.h not in C/sys/un.h not in /usr/include/sys/un.h makedepend: warning: C/client.c (reading /usr/include/stdint.h, line 27): cannot find include file "bits/wchar.h" not in GENH/bits/wchar.h not in C/bits/wchar.h not in /usr/include/bits/wchar.h makedepend: warning: C/client.c (reading /usr/include/stdint.h, line 28): cannot find include file "bits/wordsize.h" not in GENH/bits/wordsize.h not in C/bits/wordsize.h not in /usr/include/bits/wordsize.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 25): cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 26): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 356): cannot find include file "bits/in.h" not in GENH/bits/in.h not in C/bits/in.h not in /usr/include/bits/in.h makedepend: warning: C/client.c (reading /usr/include/netinet/in.h, line 376): cannot find include file "bits/byteswap.h" not in GENH/bits/byteswap.h not in C/bits/byteswap.h not in /usr/include/bits/byteswap.h makedepend: warning: C/client.c (reading /usr/include/netinet/tcp.h, line 56): cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/client.c (reading /usr/include/netinet/tcp.h, line 57): cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/client.c (reading /usr/include/netinet/tcp.h), line 119: # error "Adjust your defines" makedepend: warning: C/client.c (reading /usr/include/rpc/netdb.h, line 42): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/netdb.h, line 43): cannot find include file "bits/netdb.h" not in GENH/bits/netdb.h not in C/bits/netdb.h not in /usr/include/bits/netdb.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 33): cannot find include file "bits/sigset.h" not in GENH/bits/sigset.h not in C/bits/sigset.h not in /usr/include/bits/sigset.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 57): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 58): cannot find include file "bits/signum.h" not in GENH/bits/signum.h not in C/bits/signum.h not in /usr/include/bits/signum.h makedepend: warning: C/client.c (reading /usr/include/time.h, line 116): cannot find include file "bits/types.h" not in GENH/bits/types.h not in C/bits/types.h not in /usr/include/bits/types.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 79): cannot find include file "bits/siginfo.h" not in GENH/bits/siginfo.h not in C/bits/siginfo.h not in /usr/include/bits/siginfo.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 252): cannot find include file "bits/sigaction.h" not in GENH/bits/sigaction.h not in C/bits/sigaction.h not in /usr/include/bits/sigaction.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 339): cannot find include file "bits/sigcontext.h" not in GENH/bits/sigcontext.h not in C/bits/sigcontext.h not in /usr/include/bits/sigcontext.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 349): cannot find include file "stddef.h" not in GENH/stddef.h not in C/stddef.h not in /usr/include/stddef.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 356): cannot find include file "bits/sigstack.h" not in GENH/bits/sigstack.h not in C/bits/sigstack.h not in /usr/include/bits/sigstack.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 359): cannot find include file "sys/ucontext.h" not in GENH/sys/ucontext.h not in C/sys/ucontext.h not in /usr/include/sys/ucontext.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 394): cannot find include file "bits/pthreadtypes.h" not in GENH/bits/pthreadtypes.h not in C/bits/pthreadtypes.h not in /usr/include/bits/pthreadtypes.h makedepend: warning: C/client.c (reading /usr/include/signal.h, line 395): cannot find include file "bits/sigthread.h" not in GENH/bits/sigthread.h not in C/bits/sigthread.h not in /usr/include/bits/sigthread.h makedepend: warning: C/client.c (reading C/client.h, line 22): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: C/debug.c, line 6: cannot find include file "aisc_com.h" not in GENH/aisc_com.h not in C/aisc_com.h not in /usr/include/aisc_com.h makedepend: warning: C/server.c, line 7: cannot find include file "sys/types.h" not in GENH/sys/types.h not in C/sys/types.h not in /usr/include/sys/types.h makedepend: warning: C/server.c, line 8: cannot find include file "sys/socket.h" not in GENH/sys/socket.h not in C/sys/socket.h not in /usr/include/sys/socket.h makedepend: warning: C/server.c, line 9: cannot find include file "sys/un.h" not in GENH/sys/un.h not in C/sys/un.h not in /usr/include/sys/un.h makedepend: warning: C/server.c, line 13: cannot find include file "sys/stat.h" not in GENH/sys/stat.h not in C/sys/stat.h not in /usr/include/sys/stat.h makedepend: warning: C/server.c (reading /usr/include/limits.h, line 125): cannot find include file "limits.h" makedepend: warning: C/server.c (reading /usr/include/limits.h, line 145): cannot find include file "bits/posix1_lim.h" not in GENH/bits/posix1_lim.h not in C/bits/posix1_lim.h not in /usr/include/bits/posix1_lim.h makedepend: warning: C/server.c (reading /usr/include/limits.h, line 149): cannot find include file "bits/posix2_lim.h" not in GENH/bits/posix2_lim.h not in C/bits/posix2_lim.h not in /usr/include/bits/posix2_lim.h makedepend: warning: C/server.c, line 30: cannot find include file "sys/time.h" not in GENH/sys/time.h not in C/sys/time.h not in /usr/include/sys/time.h makedepend: warning: C/server.c, line 33: cannot find include file "aisc_com.h" not in aisc_com.h not in C/aisc_com.h not in GENH/aisc_com.h not in C/aisc_com.h not in /usr/include/aisc_com.h makedepend: warning: C/server.c (reading C/server.h, line 22): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h), line 33: # error Neither DEBUG nor NDEBUG is defined! makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h), line 147: # error arb_assert has not been defined -- check ASSERT_xxx definitions makedepend: warning: C/server.c (reading ../INCLUDE/arb_assert.h, line 183): cannot find include file "arbdb_base.h" not in GENH/arbdb_base.h not in C/arbdb_base.h not in /usr/include/arbdb_base.h makedepend: warning: C/struct_man.c, line 5: cannot find include file "aisc.h" not in aisc.h not in C/aisc.h not in GENH/aisc.h not in C/aisc.h not in /usr/include/aisc.h makedepend: warning: C/struct_man.c (reading C/struct_man.h, line 19): cannot find include file "attributes.h" not in GENH/attributes.h not in C/attributes.h not in /usr/include/attributes.h makedepend: warning: cannot open "GENC/*.c" /build/buildd/arb-5.3/SOURCE_TOOLS/mv_if_diff .depends_new .depends .depends created. make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' ../MAKEBIN/aisc AISC/aisc.pa PT.aisc GENH/aisc.h ../MAKEBIN/aisc AISC/aisc_com.pa PT.aisc GENH/aisc_com.h g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/client.o C/client.c -IGENH -I. -IC g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/debug.o C/debug.c -IGENH -I. -IC rm -f GENH/aisc_server_extern.aisc ../MAKEBIN/aisc_mkpt -a C/aisc_extern.c PT_extern.c >GENH/aisc_server_extern.aisc ../MAKEBIN/aisc AISC/aisc_debug_globals.pa PT.aisc GENC/aisc_debug_globals.c GENH/aisc_server_extern.aisc GENH/import_proto.h g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_debug_globals.o GENC/aisc_debug_globals.c -IGENH -I. -IC ld -rpath=/usr/lib/arb/lib -r -o client.a O/client.o O/debug.o GENC/aisc_debug_globals.o g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/server.o C/server.c -IGENH -I. -IC g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/struct_man.o C/struct_man.c -IGENH -I. -IC g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/aisc_extern.o C/aisc_extern.c -IGENH -I. -IC ../MAKEBIN/aisc AISC/aisc_server.pa PT.aisc GENC/aisc_server.c GENH/aisc_server_extern.aisc GENH/import_proto.h rm -f GENH/aisc_server_proto.h ../MAKEBIN/aisc_mkpt -C GENC/aisc_server.c >GENH/aisc_server_proto.h rm -f GENH/aisc_server_extern.h ../MAKEBIN/aisc_mkpt -C C/aisc_extern.c PT_extern.c >GENH/aisc_server_extern.h ../MAKEBIN/aisc AISC/aisc_global.pa PT.aisc GENC/aisc_global.c GENH/aisc_server_extern.aisc GENH/import_proto.h g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_global.o GENC/aisc_global.c -IGENH -I. -IC -DAISC_SAVE_NO g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_server.o GENC/aisc_server.c -IGENH -I. -IC -DAISC_SAVE_NO g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/build/buildd/arb-5.3/INCLUDE -fno-strict-aliasing -Wno-unused -c -o PT_extern.o PT_extern.c -IGENH -I. -IC -DAISC_SAVE_NO ld -rpath=/usr/lib/arb/lib -r -o server.a O/server.o O/struct_man.o O/aisc_extern.o GENC/aisc_global.o GENC/aisc_server.o PT_extern.o make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' make[4]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' make[3]: Leaving directory `/build/buildd/arb-5.3' /usr/bin/make arb make[3]: Entering directory `/build/buildd/arb-5.3' (cd lib;/usr/bin/make all) make[4]: Entering directory `/build/buildd/arb-5.3/lib' test -e arb_tcp.dat || cp -p arb_tcp_org.dat arb_tcp.dat test -L nas && echo "lib/nas is a link - skipped" || \ (cd nas;/usr/bin/make all) make[5]: Entering directory `/build/buildd/arb-5.3/lib/nas' rm -f names.dat cp names.dat.template names.dat rm -f *% make[5]: Leaving directory `/build/buildd/arb-5.3/lib/nas' make[4]: Leaving directory `/build/buildd/arb-5.3/lib' /usr/bin/make arbbasic2 make[4]: Entering directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in TEMPLATES make[5]: Entering directory `/build/buildd/arb-5.3/TEMPLATES' ../SOURCE_TOOLS/build_info.pl make[5]: Leaving directory `/build/buildd/arb-5.3/TEMPLATES' -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS make[5]: Entering directory `/build/buildd/arb-5.3/AISC_MKPTPS' make[5]: Nothing to be done for `dummy.a'. make[5]: Leaving directory `/build/buildd/arb-5.3/AISC_MKPTPS' -------------------------------------------------------------------------------- Make everything in AISC make[5]: Entering directory `/build/buildd/arb-5.3/AISC' make[5]: Nothing to be done for `dummy.a'. make[5]: Leaving directory `/build/buildd/arb-5.3/AISC' -------------------------------------------------------------------------------- Make everything in NAMES_COM make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' -------------------------------------------------------------------------------- Make everything in PROBE_COM make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' -------------------------------------------------------------------------------- Make everything in NAMES_COM make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' /usr/bin/make SL/SL.dummy make[5]: Entering directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in SL make[6]: Entering directory `/build/buildd/arb-5.3/SL' make[7]: Entering directory `/build/buildd/arb-5.3/SL/TREE_READ' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_READ -c TreeRead.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_READ -c TreeTools.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o TREE_READ.a TreeRead.o TreeTools.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/TREE_READ' make[7]: Entering directory `/build/buildd/arb-5.3/SL/TREE_WRITE' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_WRITE -c TreeWrite.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o TREE_WRITE.a TreeWrite.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/TREE_WRITE' make[7]: Entering directory `/build/buildd/arb-5.3/SL/HELIX' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_HELIX -c BI_helix.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o HELIX.a BI_helix.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/HELIX' make[7]: Entering directory `/build/buildd/arb-5.3/SL/AW_HELIX' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_HELIX -c AW_helix.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o AW_HELIX.a AW_helix.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/AW_HELIX' make[7]: Entering directory `/build/buildd/arb-5.3/SL/AW_NAME' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_NAME -c AW_rename.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_NAME -c AW_names_admin.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o AW_NAME.a AW_rename.o AW_names_admin.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/AW_NAME' make[7]: Entering directory `/build/buildd/arb-5.3/SL/DB_SCANNER' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_DB_SCANNER -c db_scanner.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o DB_SCANNER.a db_scanner.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/DB_SCANNER' make[7]: Entering directory `/build/buildd/arb-5.3/SL/FILE_BUFFER' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FILE_BUFFER -c FileBuffer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o FILE_BUFFER.a FileBuffer.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/FILE_BUFFER' make[7]: Entering directory `/build/buildd/arb-5.3/SL/REGEXPR' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_REGEXPR -c RegExpr.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o REGEXPR.a RegExpr.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/REGEXPR' make[7]: Entering directory `/build/buildd/arb-5.3/SL/FAST_ALIGNER' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FAST_ALIGNER -c ClustalV.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FAST_ALIGNER -c fast_aligner.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include fast_aligner.cxx: In function 'const char* alignCompactedTo(AWTC_CompactedSubSequence*, const AWTC_FastSearchSequence*, int, GB_CSTR, long int, GBDATA*, GBDATA*, const AlignParams&)': fast_aligner.cxx:1254:31: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] fast_aligner.cxx:1254:84: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] ld -rpath=/usr/lib/arb/lib -r -o FAST_ALIGNER.a ClustalV.o fast_aligner.o make[7]: Leaving directory `/build/buildd/arb-5.3/SL/FAST_ALIGNER' make[6]: Leaving directory `/build/buildd/arb-5.3/SL' make[5]: Leaving directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in GL make[5]: Entering directory `/build/buildd/arb-5.3/GL' make[6]: Entering directory `/build/buildd/arb-5.3/GL/glpng' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glpng -c glpng.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include glpng.c: In function 'DefaultAlphaCallback': glpng.c:51:57: warning: parameter 'red' set but not used [-Wunused-but-set-parameter] glpng.c: In function 'pngLoadF': glpng.c:391:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] glpng.c: In function 'pngLoadRawF': glpng.c:286:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] ld -rpath=/usr/lib/arb/lib -r -o libglpng_arb.a glpng.o make[6]: Leaving directory `/build/buildd/arb-5.3/GL/glpng' make[6]: Entering directory `/build/buildd/arb-5.3/GL/glAW' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glAW -c GLwMDrawA.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glAW -c AW_window_ogl.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include -I/build/buildd/arb-5.3/WINDOW ld -rpath=/usr/lib/arb/lib -r -o libglAW.a GLwMDrawA.o AW_window_ogl.o make[6]: Leaving directory `/build/buildd/arb-5.3/GL/glAW' make[5]: Leaving directory `/build/buildd/arb-5.3/GL' make[4]: Leaving directory `/build/buildd/arb-5.3' /usr/bin/make arbshared arbapplications help make[4]: Entering directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in ARBDB make[5]: Entering directory `/build/buildd/arb-5.3/ARBDB' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsort.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adlang1.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adstring.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admatch.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include admatch.c: In function 'GBS_string_eval': admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c arbdb.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include arbdb.c: In function 'GB_copy_with_protection': arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c: In function 'gb_remove_callback': arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_core.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_core.c: In function 'ad_use': ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admath.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adoptimize.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsystem.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adindex.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adperl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adlink.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsocket.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adsocket.c: In function 'GB_get_full_path': adsocket.c:1256:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result] adsocket.c:1260:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcomm.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adcomm.c: In function 'gbcms_write_updated': adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable] adcomm.c: In function 'gbcms_talking_init_transaction': adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] adcomm.c: In function 'gbcm_read_bin': adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adhash.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adquery.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adquery.c: In function 'gb_search': adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c: In function 'GB_command_interpreter': adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_save_load.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_save_load.c: In function 'gb_write_bin_rek': ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull] ad_save_load.c: In function 'GB_save_as': ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'GB_save_quick_as': ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'GB_save_quick': ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'gb_check_saveable': ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcompr.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admalloc.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_load.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_load.c: In function 'GB_login': ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admap.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include admap.c: In function 'gb_save_mapfile': admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable] admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable] admap.c: In function 'gb_is_valid_mapfile': admap.c:722:14: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adTest.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adTest.c: In function 'testData': adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtune.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adGene.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtcp.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adhashtools.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adExperiment.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtools.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adtools.c: In function 'GBT_check_arb_file': adtools.c:74:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adseqcompr.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtables.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adRevCompl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adChangeKey.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adali.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adali.c: In function 'GBT_create_sequence_data': adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcolumns.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtree.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adname.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c aditem.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c arbdbpp.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_config.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -shared -o libARBDB.so adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o touch libARBDB.a make[5]: Leaving directory `/build/buildd/arb-5.3/ARBDB' -------------------------------------------------------------------------------- Make everything in ARBDBS make[5]: Entering directory `/build/buildd/arb-5.3/ARBDBS' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsort.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adlang1.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adstring.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admatch.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include admatch.c: In function 'GBS_string_eval': admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c arbdb.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include arbdb.c: In function 'GB_copy_with_protection': arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c: In function 'gb_remove_callback': arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_core.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_core.c: In function 'ad_use': ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admath.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adoptimize.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsystem.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adindex.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adperl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adlink.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsocket.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adsocket.c: In function 'GB_get_full_path': adsocket.c:1256:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result] adsocket.c:1260:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcomm.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adcomm.c: In function 'gbcms_write_updated': adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable] adcomm.c: In function 'gbcms_talking_init_transaction': adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] adcomm.c: In function 'gbcm_read_bin': adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adhash.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adquery.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adquery.c: In function 'gb_search': adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c: In function 'GB_command_interpreter': adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_save_load.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_save_load.c: In function 'gb_write_bin_rek': ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull] ad_save_load.c: In function 'GB_save_as': ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'GB_save_quick_as': ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'GB_save_quick': ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'gb_check_saveable': ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcompr.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admalloc.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_load.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_load.c: In function 'GB_login': ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admap.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include admap.c: In function 'gb_save_mapfile': admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable] admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable] admap.c: In function 'gb_is_valid_mapfile': admap.c:722:14: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adTest.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adTest.c: In function 'testData': adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtune.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adGene.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtcp.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adhashtools.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adExperiment.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtools.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adtools.c: In function 'GBT_check_arb_file': adtools.c:74:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adseqcompr.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtables.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adRevCompl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adChangeKey.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adali.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adali.c: In function 'GBT_create_sequence_data': adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcolumns.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtree.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adname.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c aditem.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c arbdbpp.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_config.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o libARBDB.a adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o make[5]: Leaving directory `/build/buildd/arb-5.3/ARBDBS' -------------------------------------------------------------------------------- Make everything in ARBDB2 make[5]: Entering directory `/build/buildd/arb-5.3/ARBDB2' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsort.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adlang1.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adstring.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admatch.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include admatch.c: In function 'GBS_string_eval': admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c arbdb.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include arbdb.c: In function 'GB_copy_with_protection': arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull] arbdb.c: In function 'gb_remove_callback': arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_core.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_core.c: In function 'ad_use': ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admath.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adoptimize.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsystem.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adindex.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adperl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adlink.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsocket.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adsocket.c: In function 'GB_get_full_path': adsocket.c:1256:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result] adsocket.c:1260:21: warning: ignoring return value of 'realpath', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcomm.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adcomm.c: In function 'gbcms_write_updated': adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable] adcomm.c: In function 'gbcms_talking_init_transaction': adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] adcomm.c: In function 'gbcm_read_bin': adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adhash.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adquery.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adquery.c: In function 'gb_search': adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare] adquery.c: In function 'GB_command_interpreter': adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_save_load.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_save_load.c: In function 'gb_write_bin_rek': ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull] ad_save_load.c: In function 'GB_save_as': ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'GB_save_quick_as': ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'GB_save_quick': ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c: In function 'gb_check_saveable': ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcompr.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admalloc.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_load.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_load.c: In function 'GB_login': ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admap.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include admap.c: In function 'gb_save_mapfile': admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable] admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable] admap.c: In function 'gb_is_valid_mapfile': admap.c:722:14: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adTest.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adTest.c: In function 'testData': adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtune.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adGene.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtcp.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adhashtools.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adExperiment.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtools.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adtools.c: In function 'GBT_check_arb_file': adtools.c:74:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adseqcompr.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtables.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adRevCompl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adChangeKey.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adali.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adali.c: In function 'GBT_create_sequence_data': adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcolumns.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtree.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adname.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c aditem.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_config.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -shared -o libARBDB.so adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o ad_config.o touch libARBDB.a make[5]: Leaving directory `/build/buildd/arb-5.3/ARBDB2' -------------------------------------------------------------------------------- Make everything in ARBDBPP make[5]: Entering directory `/build/buildd/arb-5.3/ARBDBPP' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adtsequence.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adt_edit.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adt_edit.cxx: In member function 'AD_ERR* ADT_SEQUENCE::show_edit_search(ADT_SEARCH*, ADT_EDIT*)': adt_edit.cxx:581:13: warning: variable 'seq_empty_var' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adtali.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adextended.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adseq.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include adseq.cxx: In member function 'AD_ERR* AD_CONT::create(AD_SPECIES*, AD_ALI*)': adseq.cxx:1012:20: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] adseq.cxx:1012:84: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adspecies.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c admain.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adali.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c liste.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -shared -o libARBDBPP.so adtsequence.o adt_edit.o adtali.o adextended.o adseq.o adspecies.o admain.o adali.o liste.o touch libARBDBPP.a make[5]: Leaving directory `/build/buildd/arb-5.3/ARBDBPP' -------------------------------------------------------------------------------- Make everything in WINDOW make[5]: Entering directory `/build/buildd/arb-5.3/WINDOW' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_position.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_Xm.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_at.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_button.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AW_button.cxx: In function 'void AW_variable_update_callback(Widget, XtPointer, XtPointer)': AW_button.cxx:199:37: warning: variable 'found' set but not used [-Wunused-but-set-variable] AW_button.cxx: In member function 'int AW_window::get_index_of_element(AW_selection_list*, const char*)': AW_button.cxx:1617:17: warning: variable 'found_index' set but not used [-Wunused-but-set-variable] AW_button.cxx: In function 'const char* detect_bitmap_size(const char*, int*, int*)': AW_button.cxx:398:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] AW_button.cxx:417:51: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] AW_button.cxx:418:51: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_click.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_debug.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_device.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AW_device.cxx: In member function 'int AW_device::text_overlay(int, const char*, long int, AW_pos, AW_pos, AW_pos, AW_bitset, AW_CL, AW_CL, AW_CL, AW_pos, AW_pos, int (*)(AW_device*, int, const char*, size_t, size_t, size_t, AW_pos, AW_pos, AW_pos, AW_pos, AW_CL, AW_CL, AW_CL))': AW_device.cxx:721:22: warning: variable 'yi' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_font_group.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_global_awars.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_nawar.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AW_nawar.cxx: In member function 'AW_awar* AW_root::awar_pointer(const char*, void*, AW_default)': AW_nawar.cxx:193:111: warning: passing NULL to non-pointer argument 4 of 'AW_awar::AW_awar(AW_VARIABLE_TYPE, const char*, const char*, double, AW_default, AW_root*)' [-Wconversion-null] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_preset.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AW_preset.cxx: In function 'void* AW_manage_GC(AW_window*, AW_device*, int, int, AW_GCM_AREA, void (*)(AW_window*, AW_CL, AW_CL), AW_CL, AW_CL, bool, const char*, ...)': AW_preset.cxx:613:18: warning: variable 'flag_no_color_selector' set but not used [-Wunused-but-set-variable] AW_preset.cxx:614:18: warning: variable 'flag_append_in_same_line' set but not used [-Wunused-but-set-variable] AW_preset.cxx: In function 'bool aw_insert_gcs(AW_root*, AW_window_simple*, aw_gc_manager*, bool)': AW_preset.cxx:786:17: warning: variable 'first' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_print.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_question.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_size.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_status.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AW_status.cxx: In function 'int aw_status_read_int(int, int)': AW_status.cxx:281:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] AW_status.cxx: In function 'void aw_help_edit_help(AW_window*)': AW_status.cxx:1746:25: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] AW_status.cxx: In function 'void aw_status_timer_event(AW_root*, AW_CL, AW_CL)': AW_status.cxx:419:28: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_window.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AW_window.cxx: In member function 'void AW_window::insert_separator()': AW_window.cxx:3002:12: warning: variable 'separator' set but not used [-Wunused-but-set-variable] AW_window.cxx: In member function 'void AW_window::insert_separator_help()': AW_window.cxx:3011:12: warning: variable 'separator' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfig.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfigfont.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfont.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xkey.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_window_Xm_interface.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -shared -o libAW.so AW_position.o AW_Xm.o AW_at.o AW_button.o AW_click.o AW_debug.o AW_device.o AW_font_group.o AW_global_awars.o AW_nawar.o AW_preset.o AW_print.o AW_question.o AW_size.o AW_status.o AW_window.o AW_xfig.o AW_xfigfont.o AW_xfont.o AW_xkey.o AW_window_Xm_interface.o touch libAW.a make[5]: Leaving directory `/build/buildd/arb-5.3/WINDOW' -------------------------------------------------------------------------------- Make everything in AWT make[5]: Entering directory `/build/buildd/arb-5.3/AWT' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_input_mask.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AWT_input_mask.cxx: In function 'void create_new_mask_cb(AW_window*)': AWT_input_mask.cxx:2242:18: warning: variable 'closeWindow' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_hotkeys.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_www.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tables.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AWT_tables.cxx: In function 'void ad_table_field_reorder_cb(AW_window*, awt_table*)': AWT_tables.cxx:25:14: warning: variable 'warning' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_irstree.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_asciiprint.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_map_key.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree_cmp.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_colors.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_pro_a_nucs.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_csp.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_canvas.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_dtree.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree_cb.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_nei.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_filter.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_sel_boxes.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_canio.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AWT_canio.cxx: In function 'void AWT_print_tree_to_file_xfig(AW_window*, AW_CL)': AWT_canio.cxx:268:53: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_nds.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_query_and_functions.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_file_selection.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_preset.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_dna.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_protein.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_simple_pro.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_codon_table.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AWT_codon_table.cxx: In function 'bool AWT_is_codon(char, const char*, const AWT_allowedCode&, AWT_allowedCode&, const char**)': AWT_codon_table.cxx:518:18: warning: variable 'correct_disallowed_translation' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_iupac.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_config_manager.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AWT_config_manager.cxx: In function 'void AWT_start_config_manager(AW_window*, AW_CL)': AWT_config_manager.cxx:119:24: warning: variable 'reopen' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_advice.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_db_browser.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_attributes.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_changekey.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_item_sel_list.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_macro.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_translate.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -shared -o libAWT.so AWT_input_mask.o AWT_hotkeys.o AWT_www.o AWT_tables.o AWT_irstree.o AWT_asciiprint.o AWT_map_key.o AWT_tree_cmp.o AWT_seq_colors.o AWT_pro_a_nucs.o AWT_csp.o AWT_canvas.o AWT_dtree.o AWT_tree.o AWT_tree_cb.o AWT_nei.o AWT_filter.o AWT_sel_boxes.o AWT_canio.o AWT_nds.o AWT_query_and_functions.o AWT_file_selection.o AWT_preset.o AWT_seq_dna.o AWT_seq_protein.o AWT_seq_simple_pro.o AWT_codon_table.o AWT_iupac.o AWT_config_manager.o AWT_advice.o AWT_db_browser.o AWT_attributes.o AWT_changekey.o AWT_item_sel_list.o AWT_macro.o AWT_translate.o touch libAWT.a make[5]: Leaving directory `/build/buildd/arb-5.3/AWT' /usr/bin/make -C bin all make[5]: Entering directory `/build/buildd/arb-5.3/bin' find . -type l -exec rm {} \; ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` . make[5]: Leaving directory `/build/buildd/arb-5.3/bin' -------------------------------------------------------------------------------- Make everything in GDEHELP make[5]: Entering directory `/build/buildd/arb-5.3/GDEHELP' ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/align.menu > MENUS/align.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/desoete.menu > MENUS/desoete.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/dnamlrates.menu > MENUS/dnamlrates.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/export.menu > MENUS/export.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/fastdnaml.menu > MENUS/fastdnaml.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/import.menu > MENUS/import.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/inc_fastdnaml.menu > MENUS/inc_fastdnaml.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_dist.menu > MENUS/phylip_dist.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_dist_org.menu > MENUS/phylip_dist_org.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_help.menu > MENUS/phylip_help.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_ml.menu > MENUS/phylip_ml.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_pars.menu > MENUS/phylip_pars.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/pretty_print.menu > MENUS/pretty_print.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/puzzle.menu > MENUS/puzzle.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/raxml.menu > MENUS/raxml.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/start_arb.menu > MENUS/start_arb.genmenu ( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/warning.menu > MENUS/warning.genmenu chmod a+w ARB_GDEmenus chmod: cannot access `ARB_GDEmenus': No such file or directory make[5]: [ARB_GDEmenus] Error 1 (ignored) cpp -IMENUS ARB_GDEmenus.source >ARB_GDEmenus chmod a-w ARB_GDEmenus grep -i '^itemhelp:' < ARB_GDEmenus | sed -e 's/^itemhelp://' | sort | uniq > helpfiles.lst make[6]: Entering directory `/build/buildd/arb-5.3/GDEHELP' ---------------------------------------------------------------- Collecting documentation for external programs used in GDE menus lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYLIP/doc/proml.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/proml.doc test -s HELP_DOC_GEN/proml.doc || (echo HELP_DOC_GEN/proml.doc not generated or empty && rm HELP_DOC_GEN/proml.doc && false) lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYLIP/doc/dnapars.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/dnapars.doc test -s HELP_DOC_GEN/dnapars.doc || (echo HELP_DOC_GEN/dnapars.doc not generated or empty && rm HELP_DOC_GEN/dnapars.doc && false) lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYLIP/doc/protpars.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/protpars.doc test -s HELP_DOC_GEN/protpars.doc || (echo HELP_DOC_GEN/protpars.doc not generated or empty && rm HELP_DOC_GEN/protpars.doc && false) lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYML/usersguide_phyliplike.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/phyml.doc test -s HELP_DOC_GEN/phyml.doc || (echo HELP_DOC_GEN/phyml.doc not generated or empty && rm HELP_DOC_GEN/phyml.doc && false) make[6]: Leaving directory `/build/buildd/arb-5.3/GDEHELP' make[5]: Leaving directory `/build/buildd/arb-5.3/GDEHELP' -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS make[5]: Entering directory `/build/buildd/arb-5.3/AISC_MKPTPS' make[5]: Nothing to be done for `dummy.a'. make[5]: Leaving directory `/build/buildd/arb-5.3/AISC_MKPTPS' -------------------------------------------------------------------------------- Make everything in AISC make[5]: Entering directory `/build/buildd/arb-5.3/AISC' make[5]: Nothing to be done for `dummy.a'. make[5]: Leaving directory `/build/buildd/arb-5.3/AISC' -------------------------------------------------------------------------------- Make everything in PROBE_COM make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' -------------------------------------------------------------------------------- Building prototyper /usr/bin/make AISC_MKPTPS/AISC_MKPTPS.dummy make[5]: Entering directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in AISC_MKPTPS make[6]: Entering directory `/build/buildd/arb-5.3/AISC_MKPTPS' make[6]: Nothing to be done for `AISC_MKPTPS.a'. make[6]: Leaving directory `/build/buildd/arb-5.3/AISC_MKPTPS' make[5]: Leaving directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in ARB_GDE make[5]: Entering directory `/build/buildd/arb-5.3/ARB_GDE' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_ParseMenu.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_event.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GDE_event.cxx: In function 'void GDE_export(NA_Alignment*, char*, long int)': GDE_event.cxx:305:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GDE_event.cxx:305:89: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GDE_event.cxx:369:43: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GDE_event.cxx:369:92: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GDE_event.cxx:428:36: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GDE_event.cxx:428:88: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GDE_event.cxx: In function 'void GDE_startaction_cb(AW_window*, GmenuItem*, AW_CL)': GDE_event.cxx:557:23: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_arbdb_io.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_HGLfile.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GDE_HGLfile.cxx: In function 'void StripSpecial(char*)': GDE_HGLfile.cxx:69:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] GDE_HGLfile.cxx: In function 'void ReadGDE(char*, NA_Alignment*, int)': GDE_HGLfile.cxx:199:26: warning: variable 'count' set but not used [-Wunused-but-set-variable] GDE_HGLfile.cxx:200:35: warning: variable 'c' set but not used [-Wunused-but-set-variable] GDE_HGLfile.cxx:203:18: warning: variable 'genclen' set but not used [-Wunused-but-set-variable] GDE_HGLfile.cxx:195:6: warning: parameter 'type' set but not used [-Wunused-but-set-parameter] In file included from /usr/include/string.h:642:0, from GDE_HGLfile.cxx:5: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ReadGDE(char*, NA_Alignment*, int)' at GDE_HGLfile.cxx:497:64: /usr/include/i386-linux-gnu/bits/string3.h:121:71: warning: call to char* __builtin___strncpy_chk(char*, const char*, unsigned int, unsigned int) will always overflow destination buffer [enabled by default] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_Genbank.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GDE_Genbank.cxx: In function 'void ReadGen(char*, NA_Alignment*, int)': GDE_Genbank.cxx:94:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] GDE_Genbank.cxx:89:6: warning: parameter 'type' set but not used [-Wunused-but-set-parameter] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_FileIO.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GDE_FileIO.cxx: In function 'void ReadNA_Flat(char*, char*, int)': GDE_FileIO.cxx:125:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] GDE_FileIO.cxx:125:16: warning: variable 'c' set but not used [-Wunused-but-set-variable] GDE_FileIO.cxx:128:10: warning: variable 'curname' set but not used [-Wunused-but-set-variable] GDE_FileIO.cxx:122:13: warning: parameter 'type' set but not used [-Wunused-but-set-parameter] GDE_FileIO.cxx: In function 'void AppendNA(NA_Base*, int, NA_Sequence*)': GDE_FileIO.cxx:422:14: warning: variable 'temp' set but not used [-Wunused-but-set-variable] GDE_FileIO.cxx: In function 'void ReadCMask(const char*)': GDE_FileIO.cxx:710:24: warning: variable 'orig_ctype' set but not used [-Wunused-but-set-variable] GDE_FileIO.cxx: In function 'int WriteStatus(NA_Alignment*, char*, int)': GDE_FileIO.cxx:860:5: warning: parameter 'method' set but not used [-Wunused-but-set-parameter] GDE_FileIO.cxx: In function 'void ReadStatus(char*)': GDE_FileIO.cxx:927:6: warning: parameter 'filename' set but not used [-Wunused-but-set-parameter] GDE_FileIO.cxx: In function 'void NormalizeOffset(NA_Alignment*)': GDE_FileIO.cxx:962:9: warning: variable 'i' set but not used [-Wunused-but-set-variable] GDE_FileIO.cxx: In function 'void ReadCMask(const char*)': GDE_FileIO.cxx:837:48: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] ld -rpath=/usr/lib/arb/lib -r -o ARB_GDE.a GDE_ParseMenu.o GDE.o GDE_event.o GDE_arbdb_io.o GDE_HGLfile.o GDE_Genbank.o GDE_FileIO.o make[5]: Leaving directory `/build/buildd/arb-5.3/ARB_GDE' -------------------------------------------------------------------------------- Make everything in NAMES_COM make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' -------------------------------------------------------------------------------- Make everything in PROBE_COM make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_COM' -------------------------------------------------------------------------------- Make everything in AWTC make[5]: Entering directory `/build/buildd/arb-5.3/AWTC' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_constructSequence.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AWTC_constructSequence.cxx: In function 'char* AWTC_constructSequence(int, const char**, int, char**)': AWTC_constructSequence.cxx:507:11: warning: unused variable 'resultSeq' [-Wunused-variable] AWTC_constructSequence.cxx:509:9: warning: unused variable 'off' [-Wunused-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_next_neighbours.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_seq_search.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_submission.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o AWTC.a AWTC_constructSequence.o AWTC_next_neighbours.o AWTC_seq_search.o AWTC_submission.o make[5]: Leaving directory `/build/buildd/arb-5.3/AWTC' -------------------------------------------------------------------------------- Make everything in AWTI make[5]: Entering directory `/build/buildd/arb-5.3/AWTI' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWTI -c AWTI_import.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_AWTI -c AWTI_export.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o AWTI.a AWTI_import.o AWTI_export.o make[5]: Leaving directory `/build/buildd/arb-5.3/AWTI' -------------------------------------------------------------------------------- Make everything in GENOM make[5]: Entering directory `/build/buildd/arb-5.3/GENOM' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_interface.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_map.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GEN_map.cxx: In function 'void gen_extract_gene_2_pseudoSpecies(GBDATA*, GBDATA*, EG2PS_data*)': GEN_map.cxx:882:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] GEN_map.cxx:882:93: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_graphic.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GEN_graphic.cxx:158:12: warning: unused parameter 'selected_range' [-Wunused-parameter] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_gene.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_nds.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include GEN_nds.cxx:307:2: warning: #warning make this function more general like AWT_popup_select_species_field_window [-Wcpp] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_color_groups.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_translations.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c EXP_interface.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c EXP_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o GENOM.a GEN_interface.o GEN_map.o GEN_graphic.o GEN_gene.o GEN_nds.o GEN_color_groups.o GEN_translations.o EXP_interface.o EXP_main.o make[5]: Leaving directory `/build/buildd/arb-5.3/GENOM' -------------------------------------------------------------------------------- Make everything in GENOM_IMPORT make[5]: Entering directory `/build/buildd/arb-5.3/GENOM_IMPORT' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c GenomeImport.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Importer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c DBwriter.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include DBwriter.cxx: In member function 'void DBwriter::writeSequence(const SequenceBuffer&)': DBwriter.cxx:226:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] DBwriter.cxx:226:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c SequenceBuffer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c MetaInfo.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Feature.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Location.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c tools.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include -------------------- Checking GENOM_IMPORT.a Target 'GENOM_IMPORT.a' not found -> rebuilding GENOM_IMPORT.a (Wed Dec 31 23:59:59 1969) ld -rpath=/usr/lib/arb/lib -r -o GENOM_IMPORT.a GenomeImport.o Importer.o DBwriter.o SequenceBuffer.o MetaInfo.o Feature.o Location.o tools.o make[5]: Leaving directory `/build/buildd/arb-5.3/GENOM_IMPORT' -------------------------------------------------------------------------------- Make everything in MERGE make[5]: Entering directory `/build/buildd/arb-5.3/MERGE' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_checkfield.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_trees.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_alignment.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_species.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_extendeds.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_names.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_gene_species.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_configs.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_preserves.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o MERGE.a MG_checkfield.o MG_main.o MG_trees.o MG_alignment.o MG_species.o MG_extendeds.o MG_names.o MG_gene_species.o MG_configs.o MG_preserves.o make[5]: Leaving directory `/build/buildd/arb-5.3/MERGE' -------------------------------------------------------------------------------- Make everything in MULTI_PROBE make[5]: Entering directory `/build/buildd/arb-5.3/MULTI_PROBE' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_Window.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_noclass.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_sonde.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_sondentopf.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include MP_sondentopf.cxx: In member function 'Sonde* ST_Container::cache_Sonde(char*, int, double)': MP_sondentopf.cxx:67:13: warning: variable 'hashreturnval' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_mo_liste.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include MP_mo_liste.cxx: In member function 'long int MO_Liste::put_entry(const char*)': MP_mo_liste.cxx:184:13: warning: variable 'hashreturnval' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_probe.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include MP_probe.cxx: In member function 'void ProbeValuation::init_valuation()': MP_probe.cxx:178:22: warning: variable 'stc' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_GenerationDuplicates.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_Generation.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_probe_combi_statistic.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_probe_tabs.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_permute.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o MULTI_PROBE.a MP_main.o MP_Window.o MP_noclass.o MP_sonde.o MP_sondentopf.o MP_mo_liste.o MP_probe.o MP_GenerationDuplicates.o MP_Generation.o MP_probe_combi_statistic.o MP_probe_tabs.o MP_permute.o make[5]: Leaving directory `/build/buildd/arb-5.3/MULTI_PROBE' -------------------------------------------------------------------------------- Make everything in NTREE make[5]: Entering directory `/build/buildd/arb-5.3/NTREE' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_consensus.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AP_consensus.cxx: In function 'const char* CON_export(char*, char*, int**, char*, int*, char*, int, long int, long int, int, int, int, double, double, int, int)': AP_consensus.cxx:409:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:409:72: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:411:25: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:411:75: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:465:28: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:465:80: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx: In function 'void CON_calc_max_freq_cb(AW_window*)': AP_consensus.cxx:962:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:962:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:963:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:963:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:966:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_consensus.cxx:966:77: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_conservProfile2Gnuplot.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AP_conservProfile2Gnuplot.cxx: In function 'void AP_conservProfile2Gnuplot_callback(AW_window*)': AP_conservProfile2Gnuplot.cxx:58:42: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_cprofile.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AP_cprofile.cxx: In function 'void CPRO_workupstatistic(unsigned char)': AP_cprofile.cxx:234:17: warning: variable 'colmax' set but not used [-Wunused-but-set-variable] AP_cprofile.cxx: In function 'void CPRO_memrequirement_cb(AW_root*)': AP_cprofile.cxx:663:10: warning: variable 'versus' set but not used [-Wunused-but-set-variable] AP_cprofile.cxx: In function 'void CPRO_condense_cb(AW_window*, AW_CL)': AP_cprofile.cxx:1420:14: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_cprofile.cxx:1420:62: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_cprofile.cxx:1423:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] AP_cprofile.cxx:1423:72: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_csp_2_gnuplot.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include AP_csp_2_gnuplot.cxx: In function 'char* get_overlay_files(AW_root*, const char*, const char*&)': AP_csp_2_gnuplot.cxx:92:50: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] AP_csp_2_gnuplot.cxx:92:63: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] AP_csp_2_gnuplot.cxx:100:55: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] AP_csp_2_gnuplot.cxx:100:68: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] AP_csp_2_gnuplot.cxx: In function 'void AP_csp_2_gnuplot_cb(AW_window*, AW_CL, AW_CL)': AP_csp_2_gnuplot.cxx:388:62: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_pos_var_pars.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_cb.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include NT_cb.cxx: In function 'void NT_system_cb2(AW_window*, AW_CL, AW_CL)': NT_cb.cxx:128:35: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_concatenate.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include NT_concatenate.cxx: In function 'const char* displayAlignmentInfo(GBDATA*, GB_ERROR, char*, char*)': NT_concatenate.cxx:310:37: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] NT_concatenate.cxx:310:93: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] NT_concatenate.cxx: In function 'void concatenateAlignments(AW_window*)': NT_concatenate.cxx:415:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] NT_concatenate.cxx:415:95: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] NT_concatenate.cxx: In function 'GBDATA* concatenateFieldsCreateNewSpecies(AW_window*, GBDATA*, speciesConcatenateList)': NT_concatenate.cxx:664:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] NT_concatenate.cxx:664:114: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_dbrepair.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_edconf.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_extern.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_import.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include NT_import.cxx: In function 'void NT_import_sequences(AW_window*, AW_CL, AW_CL)': NT_import.cxx:52:30: warning: variable 'gb_merge_is_genom_db' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_ins_col.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_join.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include NT_main.cxx: In function 'int main(int, char**)': NT_main.cxx:399:50: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_sort.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_trackAliChanges.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validManual.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validNameParser.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include NT_validNameParser.cxx: In function 'validNames::Desco validNames::determineType(const string&)': NT_validNameParser.cxx:89:14: warning: variable 'isSee' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validNames.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_ali.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_ext.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_spec.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_spec.cxx: In function 'void ad_field_convert_commit_cb(AW_window*, AW_CL)': ad_spec.cxx:729:29: warning: unused variable 'selector' [-Wunused-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_transpro.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_transpro.cxx: In function 'const char* arb_r2a(GBDATA*, bool, bool, int, bool, const char*, const char*)': ad_transpro.cxx:159:48: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] ad_transpro.cxx:159:100: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_trees.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ad_trees.cxx: In function 'char* readXmlTree(char*)': ad_trees.cxx:418:44: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result] ad_trees.cxx:422:44: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result] -------------------- Checking NTREE.a Target 'NTREE.a' not found -> rebuilding NTREE.a (Wed Dec 31 23:59:59 1969) ld -rpath=/usr/lib/arb/lib -r -o NTREE.a AP_consensus.o AP_conservProfile2Gnuplot.o AP_cprofile.o AP_csp_2_gnuplot.o AP_pos_var_pars.o NT_cb.o NT_concatenate.o NT_dbrepair.o NT_edconf.o NT_extern.o NT_import.o NT_ins_col.o NT_join.o NT_main.o NT_sort.o NT_trackAliChanges.o NT_validManual.o NT_validNameParser.o NT_validNames.o ad_ali.o ad_ext.o ad_spec.o ad_transpro.o ad_trees.o make[5]: Leaving directory `/build/buildd/arb-5.3/NTREE' -------------------------------------------------------------------------------- Make everything in PRIMER_DESIGN make[5]: Entering directory `/build/buildd/arb-5.3/PRIMER_DESIGN' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Pair.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Item.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Node.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include PRD_Node.cxx: In member function 'void Node::print()': PRD_Node.cxx:64:28: warning: array subscript is above array bounds [-Warray-bounds] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Range.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_SequenceIterator.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_SearchFIFO.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Design.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c primer_design.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o PRIMER_DESIGN.a PRD_Pair.o PRD_Item.o PRD_Node.o PRD_Range.o PRD_SequenceIterator.o PRD_SearchFIFO.o PRD_Design.o primer_design.o make[5]: Leaving directory `/build/buildd/arb-5.3/PRIMER_DESIGN' -------------------------------------------------------------------------------- Make everything in PROBE_DESIGN make[5]: Entering directory `/build/buildd/arb-5.3/PROBE_DESIGN' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o probe_design.o probe_design.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include probe_design.cxx: In function 'const char* pd_get_the_gene_names(bytestring&, bytestring&)': probe_design.cxx:293:21: warning: variable 'sequence' set but not used [-Wunused-but-set-variable] probe_design.cxx: In function 'void pd_query_pt_server(AW_window*)': probe_design.cxx:1769:35: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o SaiProbeVisualization.o SaiProbeVisualization.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o probe_match_parser.o probe_match_parser.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o PROBE_DESIGN.a probe_design.o SaiProbeVisualization.o probe_match_parser.o make[5]: Leaving directory `/build/buildd/arb-5.3/PROBE_DESIGN' -------------------------------------------------------------------------------- Make everything in SEQ_QUALITY make[5]: Entering directory `/build/buildd/arb-5.3/SEQ_QUALITY' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SEQ_QUALITY -c SQ_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SEQ_QUALITY -c SQ_functions.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include SQ_functions.cxx: In function 'const char* SQ_reset_quality_calcstate(GBDATA*)': SQ_functions.cxx:82:21: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:82:34: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:92:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:92:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx: In function 'int SQ_get_value(GBDATA*, const char*)': SQ_functions.cxx:131:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'int SQ_get_value_no_tree(GBDATA*, const char*)': SQ_functions.cxx:171:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_evaluate(GBDATA*, const SQ_weights&, bool)': SQ_functions.cxx:239:21: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:239:34: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:216:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_pass1(SQ_GroupData*, GBDATA*, GBT_TREE*, AP_filter*)': SQ_functions.cxx:450:17: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:450:30: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:461:25: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:461:38: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:469:25: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:469:38: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:439:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_pass1_no_tree(SQ_GroupData*, GBDATA*, AP_filter*)': SQ_functions.cxx:554:21: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:554:34: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:564:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:564:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:572:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:572:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:534:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_pass2(const SQ_GroupData*, GBDATA*, GBT_TREE*, AP_filter*)': SQ_functions.cxx:649:17: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:649:30: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:659:25: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:659:38: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:664:25: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:664:38: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:733:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:733:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:737:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:737:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:638:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_pass2_no_tree(const SQ_GroupData*, GBDATA*, AP_filter*)': SQ_functions.cxx:889:21: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:889:34: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:898:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:898:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:903:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:903:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:972:33: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:972:46: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:976:33: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:976:46: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:871:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_count_nr_of_species(GBDATA*)': SQ_functions.cxx:1120:21: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:1120:34: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:1130:29: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:1130:42: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] SQ_functions.cxx:1102:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] SQ_functions.cxx: In function 'const char* SQ_mark_species(GBDATA*, int, bool)': SQ_functions.cxx:1239:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SEQ_QUALITY -c SQ_GroupData.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o SEQ_QUALITY.a SQ_main.o SQ_functions.o SQ_GroupData.o make[5]: Leaving directory `/build/buildd/arb-5.3/SEQ_QUALITY' -------------------------------------------------------------------------------- Make everything in SERVERCNTRL make[5]: Entering directory `/build/buildd/arb-5.3/SERVERCNTRL' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SERVERCNTRL -c servercntrl.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include servercntrl.c: In function 'arb_look_and_start_server': servercntrl.c:202:35: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] servercntrl.c: In function 'arb_start_server': servercntrl.c:145:68: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] ld -rpath=/usr/lib/arb/lib -r -o SERVERCNTRL.a servercntrl.o make[5]: Leaving directory `/build/buildd/arb-5.3/SERVERCNTRL' -------------------------------------------------------------------------------- Make everything in SL/AW_NAME make[5]: Entering directory `/build/buildd/arb-5.3/SL/AW_NAME' make[5]: `AW_NAME.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/AW_NAME' -------------------------------------------------------------------------------- Make everything in SL/DB_SCANNER make[5]: Entering directory `/build/buildd/arb-5.3/SL/DB_SCANNER' make[5]: `DB_SCANNER.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/DB_SCANNER' -------------------------------------------------------------------------------- Make everything in SL/FILE_BUFFER make[5]: Entering directory `/build/buildd/arb-5.3/SL/FILE_BUFFER' make[5]: `FILE_BUFFER.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/FILE_BUFFER' -------------------------------------------------------------------------------- Make everything in SL/HELIX make[5]: Entering directory `/build/buildd/arb-5.3/SL/HELIX' make[5]: `HELIX.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/HELIX' -------------------------------------------------------------------------------- Make everything in SL/REGEXPR make[5]: Entering directory `/build/buildd/arb-5.3/SL/REGEXPR' make[5]: `REGEXPR.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/REGEXPR' -------------------------------------------------------------------------------- Make everything in SL/TREE_READ make[5]: Entering directory `/build/buildd/arb-5.3/SL/TREE_READ' make[5]: `TREE_READ.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/TREE_READ' -------------------------------------------------------------------------------- Make everything in SL/TREE_WRITE make[5]: Entering directory `/build/buildd/arb-5.3/SL/TREE_WRITE' make[5]: `TREE_WRITE.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/TREE_WRITE' -------------------------------------------------------------------------------- Make everything in STAT make[5]: Entering directory `/build/buildd/arb-5.3/STAT' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_STAT -c ST_quality.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ST_quality.cxx: In function 'void st_ml_add_quality_string_to_species(GBDATA*, const char*, const char*, int, int, GB_HASH*, st_report_enum, const char*)': ST_quality.cxx:168:33: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] ST_quality.cxx:168:94: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_STAT -c ST_ml.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ST_ml.cxx: In member function 'ST_ML_Color* ST_ML::get_color_string(char*, AP_tree*, int, int)': ST_ml.cxx:820:9: warning: variable 'source_sequence_len' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_STAT -c ST_window.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o STAT.a ST_quality.o ST_ml.o ST_window.o make[5]: Leaving directory `/build/buildd/arb-5.3/STAT' -------------------------------------------------------------------------------- Make everything in XML make[5]: Entering directory `/build/buildd/arb-5.3/XML' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_XML -c xml.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include xml.cxx:40:15: warning: unused parameter 'quotedText' [-Wunused-parameter] ld -rpath=/usr/lib/arb/lib -r -o XML.a xml.o make[5]: Leaving directory `/build/buildd/arb-5.3/XML' -------------------------------------------------------------------------------- Make everything in NAMES_COM make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' -------------------- Updating shared libraries /usr/bin/make libs make[5]: Entering directory `/build/buildd/arb-5.3' cp LIBLINK/libARBDB.so lib/libARBDB.so cp LIBLINK/libARBDBPP.so lib/libARBDBPP.so cp LIBLINK/libARBDO.so lib/libARBDO.so cp LIBLINK/libAW.so lib/libAW.so cp LIBLINK/libAWT.so lib/libAWT.so make[5]: Leaving directory `/build/buildd/arb-5.3' -------------------- Checking bin/arb_ntree Target 'bin/arb_ntree' not found -> rebuilding bin/arb_ntree (Wed Dec 31 23:59:59 1969) Link bin/arb_ntree g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/arb_ntree -L/build/buildd/arb-5.3/LIBLINK PROBE_COM/client.a ARB_GDE/ARB_GDE.a AWTC/AWTC.a AWTI/AWTI.a GENOM/GENOM.a GENOM_IMPORT/GENOM_IMPORT.a MERGE/MERGE.a MULTI_PROBE/MULTI_PROBE.a NTREE/NTREE.a PRIMER_DESIGN/PRIMER_DESIGN.a PROBE_DESIGN/PROBE_DESIGN.a SEQ_QUALITY/SEQ_QUALITY.a SERVERCNTRL/SERVERCNTRL.a SL/AW_NAME/AW_NAME.a SL/DB_SCANNER/DB_SCANNER.a SL/FILE_BUFFER/FILE_BUFFER.a SL/HELIX/HELIX.a SL/REGEXPR/REGEXPR.a SL/TREE_READ/TREE_READ.a SL/TREE_WRITE/TREE_WRITE.a STAT/STAT.a XML/XML.a -lARBDB -lm -lAW -lAWT -L/usr//lib -lXm -lXpm -lXt -lXext -lX11 -------------------------------------------------------------------------------- Make everything in NAMES_COM make[5]: Entering directory `/build/buildd/arb-5.3/NAMES_COM' make[5]: `server.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/NAMES_COM' -------------------------------------------------------------------------------- Make everything in PARSIMONY make[5]: Entering directory `/build/buildd/arb-5.3/PARSIMONY' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_dtree.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_debug.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_klprops.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_buffer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_tree_nlen.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_tree_edge.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o PARSIMONY.a PARS_main.o PARS_dtree.o PARS_debug.o PARS_klprops.o AP_buffer.o AP_main.o AP_tree_nlen.o AP_tree_edge.o make[5]: Leaving directory `/build/buildd/arb-5.3/PARSIMONY' -------------------- Checking bin/arb_pars Target 'bin/arb_pars' not found -> rebuilding bin/arb_pars (Wed Dec 31 23:59:59 1969) Link bin/arb_pars g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/arb_pars -L/build/buildd/arb-5.3/LIBLINK NAMES_COM/client.a SERVERCNTRL/SERVERCNTRL.a PARSIMONY/PARSIMONY.a SL/HELIX/HELIX.a SL/AW_NAME/AW_NAME.a XML/XML.a -lARBDB -lm -lAW -lAWT -L/usr//lib -lXm -lXpm -lXt -lXext -lX11 -------------------------------------------------------------------------------- Make everything in EDIT make[5]: Entering directory `/build/buildd/arb-5.3/EDIT' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c edit.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c edit_naligner.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include edit_naligner.cxx: In function 'void aed_start_naligning(AW_window*)': edit_naligner.cxx:102:19: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c edit_tools.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c ed_conf.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o EDIT.a edit.o edit_naligner.o edit_tools.o ed_conf.o make[5]: Leaving directory `/build/buildd/arb-5.3/EDIT' -------------------------------------------------------------------------------- Make everything in SL/AW_HELIX make[5]: Entering directory `/build/buildd/arb-5.3/SL/AW_HELIX' make[5]: `AW_HELIX.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/AW_HELIX' -------------------- Checking bin/arb_edit Target 'bin/arb_edit' not found -> rebuilding bin/arb_edit (Wed Dec 31 23:59:59 1969) Link bin/arb_edit g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/arb_edit -L/build/buildd/arb-5.3/LIBLINK NAMES_COM/client.a SERVERCNTRL/SERVERCNTRL.a EDIT/EDIT.a ARB_GDE/ARB_GDE.a STAT/STAT.a XML/XML.a SL/HELIX/HELIX.a SL/AW_HELIX/AW_HELIX.a SL/AW_NAME/AW_NAME.a -lARBDBPP -lARBDB -lm -lAW -lAWT -L/usr//lib -lXm -lXpm -lXt -lXext -lX11 -------------------------------------------------------------------------------- Make everything in WETC make[5]: Entering directory `/build/buildd/arb-5.3/WETC' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_WETC -c -o WETC_main.o WETC_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o WETC.a WETC_main.o make[5]: Leaving directory `/build/buildd/arb-5.3/WETC' -------------------- Checking bin/arb_wetc Target 'bin/arb_wetc' not found -> rebuilding bin/arb_wetc (Wed Dec 31 23:59:59 1969) Link bin/arb_wetc g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/arb_wetc -L/build/buildd/arb-5.3/LIBLINK WETC/WETC.a SL/HELIX/HELIX.a XML/XML.a -lARBDB -lm -lAW -lAWT -L/usr//lib -lXm -lXpm -lXt -lXext -lX11 -------------------------------------------------------------------------------- Make everything in HELP_SOURCE make[5]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' /usr/bin/make date.xsl.tmp make[6]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' cat date.xsl.header >date.xsl.tmp bash -c "(export LC_ALL=C;date '+%d. %b %Y')" >>date.xsl.tmp cat date.xsl.footer >>date.xsl.tmp make[6]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' ../SOURCE_TOOLS/mv_if_diff date.xsl.tmp date.xsl date.xsl created. --------------------------------------------------- ------------ Generating some help files: (cd genhelp;/usr/bin/make all) make[6]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE/genhelp' Updating copyright.hlp from /build/buildd/arb-5.3/arb_LICENSE.txt Updating changes.hlp from /build/buildd/arb-5.3/arb_CHANGES.txt Updating agde_raxml.hlp from /build/buildd/arb-5.3/GDEHELP/HELP_WRITTEN/raxml.help Updating GDE overview agde.hlp make[6]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE/genhelp' mkdir -p Xml mkdir -p Xml/prompt mkdir -p ../lib/help_html mkdir -p ../lib/help_html/prompt mkdir -p ../lib/help mkdir -p ../lib/help/prompt g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_HELP_SOURCE -c arb_help2xml.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/bin/arb_help2xml arb_help2xml.o ../XML/XML.a -L/build/buildd/arb-5.3/LIBLINK -lARBDB cp -p oldhelp/consensus.ps.gz ../lib/help/consensus.ps.gz cp -p oldhelp/pos_variability.ps.gz ../lib/help/pos_variability.ps.gz cp -p oldhelp/arb.pdf.gz ../lib/help/arb.pdf.gz cp -p oldhelp/rna3d_manual.pdf.gz ../lib/help/rna3d_manual.pdf.gz if [ -d ../lib/help_html ] ; then find ../lib/help_html -name "*.html" -size -1 -exec rm {} \; ; fi --------------------------------------------------- [old hlp 2 xml] time /usr/bin/make xml make[6]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' touch xml.stamp oldhelp/arb_import.hlp:58: Warning: Dead link to 'agde_readseq.hlp' oldhelp/arb_import.hlp:58: Warning: Dead link to 'agde_readseq.hlp' oldhelp/gde.hlp:6: Warning: Dead link to 'ale.hlp' oldhelp/treeadm.hlp:6: Warning: Dead link to 'tr_export.hlp' ./generate_index.pl help_index.xml Xml > Xml/help_index.xml make[6]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' 3.51user 2.18system 0:07.22elapsed 79%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+3192outputs (0major+520182minor)pagefaults 0swaps --------------------------------------------------- [xml 2 hlp] time /usr/bin/make help make[6]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' make[6]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' 2.74user 1.35system 0:04.83elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+2736outputs (0major+288277minor)pagefaults 0swaps /usr/bin/make ../lib/help/FORM.hlp make[6]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' cp -p oldhelp/FORM.hlp ../lib/help/FORM.hlp make[6]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' --------------------------------------------------- [xml 2 html] time /usr/bin/make html make[6]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' cp -p Logo_25wht.gif ../lib/help_html/Logo_25wht.gif make[6]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' 2.52user 1.52system 0:04.91elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+4400outputs (0major+312553minor)pagefaults 0swaps make[5]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' -------------------------------------------------------------------------------- Make everything in READSEQ make[5]: Entering directory `/build/buildd/arb-5.3/READSEQ' Do not compile readseq. Instead use the Debian package. make[5]: Leaving directory `/build/buildd/arb-5.3/READSEQ' -------------------------------------------------------------------------------- Make everything in EDIT4 make[5]: Entering directory `/build/buildd/arb-5.3/EDIT4' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_protein_2nd_structure.o ED4_protein_2nd_structure.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_ProteinViewer.o ED4_ProteinViewer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_ProteinViewer.cxx: In function 'void PV_WriteTranslatedSequenceToDB(ED4_AA_sequence_terminal*, char*)': ED4_ProteinViewer.cxx:498:44: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] ED4_ProteinViewer.cxx:498:102: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_search.o ED4_search.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_search.cxx: In function 'void load_search_paras_from_file(AW_window*, AW_CL)': ED4_search.cxx:1616:38: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_cursor.o ED4_cursor.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_dump.o ED4_dump.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_nds.o ED4_nds.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_secedit.o ED4_secedit.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_RNA3D.o ED4_RNA3D.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_main.o ED4_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_mini_classes.o ED4_mini_classes.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_edit_string.o ED4_edit_string.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_base.o ED4_base.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_manager.o ED4_manager.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_manager.cxx: In member function 'virtual ED4_returncode ED4_manager::handle_move(ED4_move_info*)': ED4_manager.cxx:512:26: warning: variable 'level' set but not used [-Wunused-but-set-variable] ED4_manager.cxx: In member function 'virtual ED4_returncode ED4_main_manager::resize_requested_by_parent()': ED4_manager.cxx:952:20: warning: variable 'result' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_terminal.o ED4_terminal.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_terminal.cxx:164:2: warning: #warning temporary workaround - gb_type GB_INT and GB_FLOAT in the switch directive must not be displayed but ignored [-Wcpp] ED4_terminal.cxx:1422:2: warning: #warning test drawing of ED4_columnStat_terminal [-Wcpp] ED4_terminal.cxx: In member function 'virtual ED4_returncode ED4_terminal::draw_drag_box(AW_pos, AW_pos, GB_CSTR, int)': ED4_terminal.cxx:408:21: warning: variable 'width' set but not used [-Wunused-but-set-variable] ED4_terminal.cxx:408:28: warning: variable 'height' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_root.o ED4_root.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o EDB_root_bact.o EDB_root_bact.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_window.o ED4_window.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_members.o ED4_members.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_no_class.o ED4_no_class.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_no_class.cxx: In function 'ED4_returncode call_edit(void**, void**, ED4_base*)': ED4_no_class.cxx:177:17: warning: variable 'gb_type' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_list.o ED4_list.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_text_terminals.o ED4_text_terminals.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_tools.o ED4_tools.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_block.o ED4_block.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_block.cxx: In function 'void ED4_with_whole_block(ED4_blockoperation, int)': ED4_block.cxx:179:28: warning: variable 'err_term' set but not used [-Wunused-but-set-variable] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_visualizeSAI.o ED4_visualizeSAI.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o edit_naligner.o edit_naligner.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include edit_naligner.cxx: In function 'void aed_start_naligning(AW_window*)': edit_naligner.cxx:102:19: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o graph_aligner_gui.o graph_aligner_gui.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT4 -c -o ED4_dots.o ED4_dots.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ED4_dots.cxx: In function 'void dot_missing_bases(AW_window*)': ED4_dots.cxx:181:25: warning: 'sai_len' may be used uninitialized in this function [-Wuninitialized] ld -rpath=/usr/lib/arb/lib -r -o EDIT4.a ED4_protein_2nd_structure.o ED4_ProteinViewer.o ED4_search.o ED4_cursor.o ED4_dump.o ED4_nds.o ED4_secedit.o ED4_RNA3D.o ED4_main.o ED4_mini_classes.o ED4_edit_string.o ED4_base.o ED4_manager.o ED4_terminal.o ED4_root.o EDB_root_bact.o ED4_window.o ED4_members.o ED4_no_class.o ED4_list.o ED4_text_terminals.o ED4_tools.o ED4_block.o ED4_visualizeSAI.o edit_naligner.o graph_aligner_gui.o ED4_dots.o make[5]: Leaving directory `/build/buildd/arb-5.3/EDIT4' -------------------------------------------------------------------------------- Make everything in SECEDIT make[5]: Entering directory `/build/buildd/arb-5.3/SECEDIT' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_toggle.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_bonddef.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_db.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include SEC_db.cxx:328:2: warning: #warning @@@reread alilen [-Wcpp] SEC_db.cxx:329:2: warning: #warning test changing ali length! [-Wcpp] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_helix.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_graphic.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_structure.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_read.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_io.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_paint.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include SEC_paint.cxx:368:2: warning: #warning move to SEC_db_interface [-Wcpp] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_layout.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_split.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_abspos.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_SECEDIT -c SEC_main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include SEC_main.cxx:88:2: warning: #warning make the refresh invisible [-Wcpp] SEC_main.cxx:702:13: warning: unused parameter 'gb_main' [-Wunused-parameter] ld -rpath=/usr/lib/arb/lib -r -o SECEDIT.a SEC_toggle.o SEC_bonddef.o SEC_db.o SEC_helix.o SEC_graphic.o SEC_structure.o SEC_read.o SEC_io.o SEC_paint.o SEC_layout.o SEC_split.o SEC_abspos.o SEC_main.o make[5]: Leaving directory `/build/buildd/arb-5.3/SECEDIT' -------------------------------------------------------------------------------- Make everything in ISLAND_HOPPING make[5]: Entering directory `/build/buildd/arb-5.3/ISLAND_HOPPING' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ISLAND_HOPPING -c island_hopping.cpp -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ISLAND_HOPPING -DARB -c i-hopper.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ISLAND_HOPPING -DARB -c align.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include align.c: In function 'newIsland': align.c:343:49: warning: 'jjj' may be used uninitialized in this function [-Wuninitialized] align.c:343:30: warning: 'iii' may be used uninitialized in this function [-Wuninitialized] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ISLAND_HOPPING -DARB -c memory.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ISLAND_HOPPING -DARB -c trnsprob.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include trnsprob.c: In function 'updateTrnsprob': trnsprob.c:232:73: warning: 'f' may be used uninitialized in this function [-Wuninitialized] trnsprob.c:232:61: warning: 'e' may be used uninitialized in this function [-Wuninitialized] trnsprob.c:232:49: warning: 'd' may be used uninitialized in this function [-Wuninitialized] trnsprob.c:232:37: warning: 'c' may be used uninitialized in this function [-Wuninitialized] trnsprob.c:232:25: warning: 'b' may be used uninitialized in this function [-Wuninitialized] trnsprob.c:234:14: warning: 'a' may be used uninitialized in this function [-Wuninitialized] ld -rpath=/usr/lib/arb/lib -r -o ISLAND_HOPPING.a island_hopping.o i-hopper.o align.o memory.o trnsprob.o make[5]: Leaving directory `/build/buildd/arb-5.3/ISLAND_HOPPING' -------------------------------------------------------------------------------- Make everything in SL/FAST_ALIGNER make[5]: Entering directory `/build/buildd/arb-5.3/SL/FAST_ALIGNER' make[5]: `FAST_ALIGNER.a' is up to date. make[5]: Leaving directory `/build/buildd/arb-5.3/SL/FAST_ALIGNER' -------------------------------------------------------------------------------- Make everything in RNA3D make[5]: Entering directory `/build/buildd/arb-5.3/RNA3D' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_Main.o RNA3D_Main.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include RNA3D_Main.cxx: In function 'void RNA3D_StartApplication(AW_root*)': RNA3D_Main.cxx:73:32: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] RNA3D_Main.cxx:73:45: warning: 'const char* GB_get_error()' is deprecated (declared at /build/buildd/arb-5.3/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_Interface.o RNA3D_Interface.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include RNA3D_Interface.cxx: In function 'void KeyPressEventHandler(Widget, XtPointer, XEvent*, char*)': RNA3D_Interface.cxx:94:16: warning: variable 'evt' set but not used [-Wunused-but-set-variable] RNA3D_Interface.cxx:99:12: warning: variable 'count' set but not used [-Wunused-but-set-variable] RNA3D_Interface.cxx: In function 'AW_window* CreateDisplayHelices_window(AW_root*)': RNA3D_Interface.cxx:482:54: warning: 'helixRange' may be used uninitialized in this function [-Wuninitialized] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_Graphics.o RNA3D_Graphics.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_OpenGLEngine.o RNA3D_OpenGLEngine.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include RNA3D_OpenGLEngine.cxx: In function 'void ComputeRotationXY(int, int)': RNA3D_OpenGLEngine.cxx:212:13: warning: variable 'dx' set but not used [-Wunused-but-set-variable] RNA3D_OpenGLEngine.cxx:212:17: warning: variable 'dy' set but not used [-Wunused-but-set-variable] RNA3D_OpenGLEngine.cxx: In function 'void initExtensions()': RNA3D_OpenGLEngine.cxx:125:44: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_OpenGLGraphics.o RNA3D_OpenGLGraphics.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_Textures.o RNA3D_Textures.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_StructureData.o RNA3D_StructureData.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include RNA3D_StructureData.cxx: In member function 'void Structure3D::MapSearchStringsToEcoliTemplate(AW_root*)': RNA3D_StructureData.cxx:1558:92: warning: 'vLastPt.Vector3::x' may be used uninitialized in this function [-Wuninitialized] RNA3D_StructureData.cxx:1558:92: warning: 'vLastPt.Vector3::z' may be used uninitialized in this function [-Wuninitialized] RNA3D_StructureData.cxx:1558:92: warning: 'vLastPt.Vector3::y' may be used uninitialized in this function [-Wuninitialized] RNA3D_StructureData.cxx: In member function 'void Structure3D::GetSecondaryStructureInfo()': RNA3D_StructureData.cxx:327:25: warning: array subscript is above array bounds [-Warray-bounds] RNA3D_StructureData.cxx:351:9: warning: 'helixNr' may be used uninitialized in this function [-Wuninitialized] RNA3D_StructureData.cxx:361:61: warning: 'lastHelixNr' may be used uninitialized in this function [-Wuninitialized] RNA3D_StructureData.cxx:361:61: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] RNA3D_StructureData.cxx: In member function 'void Structure3D::ReadCoOrdinateFile()': RNA3D_StructureData.cxx:266:23: warning: 'pos' may be used uninitialized in this function [-Wuninitialized] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_RNA3D -c -o RNA3D_Renderer.o RNA3D_Renderer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o RNA3D.a RNA3D_Main.o RNA3D_Interface.o RNA3D_Graphics.o RNA3D_OpenGLEngine.o RNA3D_OpenGLGraphics.o RNA3D_Textures.o RNA3D_StructureData.o RNA3D_Renderer.o make[5]: Leaving directory `/build/buildd/arb-5.3/RNA3D' -------------------------------------------------------------------------------- Make everything in GL make[5]: Entering directory `/build/buildd/arb-5.3/GL' make[6]: Entering directory `/build/buildd/arb-5.3/GL/glpng' make[6]: `libglpng_arb.a' is up to date. make[6]: Leaving directory `/build/buildd/arb-5.3/GL/glpng' make[6]: Entering directory `/build/buildd/arb-5.3/GL/glAW' make[6]: `libglAW.a' is up to date. make[6]: Leaving directory `/build/buildd/arb-5.3/GL/glAW' make[5]: Leaving directory `/build/buildd/arb-5.3/GL' -------------------- Checking bin/arb_edit4 Target 'bin/arb_edit4' not found -> rebuilding bin/arb_edit4 (Wed Dec 31 23:59:59 1969) Link bin/arb_edit4 g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/arb_edit4 -L/build/buildd/arb-5.3/LIBLINK NAMES_COM/client.a AWTC/AWTC.a EDIT4/EDIT4.a SECEDIT/SECEDIT.a SERVERCNTRL/SERVERCNTRL.a STAT/STAT.a ARB_GDE/ARB_GDE.a ISLAND_HOPPING/ISLAND_HOPPING.a SL/FAST_ALIGNER/FAST_ALIGNER.a SL/HELIX/HELIX.a SL/AW_HELIX/AW_HELIX.a SL/AW_NAME/AW_NAME.a SL/FILE_BUFFER/FILE_BUFFER.a XML/XML.a RNA3D/RNA3D.a -lARBDB -lm -lAW -lAWT -L/usr//lib -lXm -lXpm -lXt -lXext -lX11 -lGL -L/build/buildd/arb-5.3/GL/glAW -lglAW -lpthread -lGLEW -lGLw -lglut -L/build/buildd/arb-5.3/GL/glpng -lglpng_arb -lpng RNA3D/RNA3D.a: In function `ReshapeOpenGLWindow(int, int)': (.text+0x40a0): undefined reference to `gluPerspective' RNA3D/RNA3D.a: In function `RenderOpenGLScene(_WidgetRec*)': (.text+0x4ffa): undefined reference to `gluLookAt' RNA3D/RNA3D.a: In function `OpenGLGraphics::WinToScreenCoordinates(int, int, double*)': (.text+0x57ed): undefined reference to `gluUnProject' collect2: ld returned 1 exit status make[4]: *** [bin/arb_edit4] Error 1 make[4]: Leaving directory `/build/buildd/arb-5.3' make[3]: *** [arb] Error 2 make[3]: Leaving directory `/build/buildd/arb-5.3' make[2]: *** [all] Error 2 make[2]: Leaving directory `/build/buildd/arb-5.3' make[2]: Entering directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Make everything in TREEGEN make[3]: Entering directory `/build/buildd/arb-5.3/TREEGEN' gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c base.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c defines.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c frand.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c readcfg.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c rns.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include rns.c: In function 'calcMutationMatrix': rns.c:367:66: warning: unused parameter 'muteRate' [-Wunused-parameter] gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c sim.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c simcfg.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c spreadin.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o TREEGEN.a base.o defines.o frand.o readcfg.o rns.o sim.o simcfg.o spreadin.o make[3]: Leaving directory `/build/buildd/arb-5.3/TREEGEN' -------------------- Checking bin/arb_treegen Target 'bin/arb_treegen' not found -> rebuilding bin/arb_treegen (Wed Dec 31 23:59:59 1969) Link bin/arb_treegen g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/arb_treegen -L/build/buildd/arb-5.3/LIBLINK TREEGEN/TREEGEN.a -------------------------------------------------------------------------------- Make everything in PROBE_SET make[3]: Entering directory `/build/buildd/arb-5.3/PROBE_SET' mkdir -p bin g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_node.o ps_node.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_filebuffer.o ps_filebuffer.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_database.o ps_database.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_tools.o ps_tools.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_show_result.o ps_show_result.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_show_result ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_show_result.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_arb2asciipaths.o ps_arb2asciipaths.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_arb2asciipaths ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_arb2asciipaths.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_my2asciipaths.o ps_my2asciipaths.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_my2asciipaths ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_my2asciipaths.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_my2ascii.o ps_my2ascii.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_my2ascii ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_my2ascii.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_get_probes.o ps_get_probes.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_get_probes ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_get_probes.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_eval_candidates.o ps_eval_candidates.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_eval ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_eval_candidates.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_find_probes.o ps_find_probes.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_find ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_find_probes.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_detect_weak_differences.o ps_detect_weak_differences.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_detect ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_detect_weak_differences.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_merge_my_dbs.o ps_merge_my_dbs.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_merge ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_merge_my_dbs.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_convert_db.o ps_convert_db.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/ps_convert ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_convert_db.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o fb_test.o fb_test.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o /build/buildd/arb-5.3/PROBE_SET/bin/fb_test ps_node.o ps_filebuffer.o ps_database.o ps_tools.o fb_test.o -L/build/buildd/arb-5.3/LIBLINK -lARBDB -lm make[3]: Leaving directory `/build/buildd/arb-5.3/PROBE_SET' -------------------------------------------------------------------------------- Make everything in ALIV3 make[3]: Entering directory `/build/buildd/arb-5.3/ALIV3' g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include a3.cxx:32:20: warning: 'DArray* ReadMatches(str)' defined but not used [-Wunused-function] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_seq.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include a3_seq.cxx: In function 'char* CompressSequence(str, UINT)': a3_seq.cxx:85:26: warning: case label value is less than minimum value for type [enabled by default] a3_seq.cxx:86:26: warning: case label value is less than minimum value for type [enabled by default] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_ptree1.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_ptree2.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_helix.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include a3_helix.cxx:302:13: warning: unused parameter 'minlen' [-Wunused-parameter] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_darray.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include a3_darray.cxx: In member function 'int DArray::Del(int)': a3_darray.cxx:155:53: warning: deleting 'vp {aka void*}' is undefined [enabled by default] a3_darray.cxx: In member function 'void DArray::Sort(cmpfunc)': a3_darray.cxx:204:13: warning: unused variable 'count' [-Wunused-variable] a3_darray.cxx: In member function 'void DArray::Clear()': a3_darray.cxx:254:61: warning: deleting 'vp {aka void*}' is undefined [enabled by default] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_ali.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include a3_ali.cxx:68:10: warning: unused parameter 'hel' [-Wunused-parameter] a3_ali.cxx:68:10: warning: unused parameter 'kon' [-Wunused-parameter] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_matrix.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include a3_matrix.cxx: In member function 'int A3Matrix::Set(int, int, vp)': a3_matrix.cxx:78:47: warning: deleting 'vp {aka void*}' is undefined [enabled by default] a3_matrix.cxx: In member function 'void A3Matrix::Clear()': a3_matrix.cxx:121:51: warning: deleting 'vp {aka void*}' is undefined [enabled by default] g++ -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_arbdb.cxx -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL -W -Wall -DNDEBUG -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_basen.c -I. -I/build/buildd/arb-5.3/INCLUDE -I/usr/include ld -rpath=/usr/lib/arb/lib -r -o ALIV3.a a3.o a3_seq.o a3_ptree1.o a3_ptree2.o a3_helix.o a3_darray.o a3_ali.o a3_matrix.o a3_arbdb.o a3_basen.o make[3]: Leaving directory `/build/buildd/arb-5.3/ALIV3' -------------------------------------------------------------------------------- Make everything in SL/HELIX make[3]: Entering directory `/build/buildd/arb-5.3/SL/HELIX' make[3]: `HELIX.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/SL/HELIX' -------------------------------------------------------------------------------- Make everything in ARBDB make[3]: Entering directory `/build/buildd/arb-5.3/ARBDB' make[3]: `libARBDB.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/ARBDB' -------------------------------------------------------------------------------- Make everything in ARBDBS make[3]: Entering directory `/build/buildd/arb-5.3/ARBDBS' make[3]: `libARBDB.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/ARBDBS' -------------------------------------------------------------------------------- Make everything in ARBDB2 make[3]: Entering directory `/build/buildd/arb-5.3/ARBDB2' make[3]: `libARBDB.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/ARBDB2' -------------------------------------------------------------------------------- Make everything in ARBDBPP make[3]: Entering directory `/build/buildd/arb-5.3/ARBDBPP' make[3]: `libARBDBPP.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/ARBDBPP' -------------------------------------------------------------------------------- Make everything in WINDOW make[3]: Entering directory `/build/buildd/arb-5.3/WINDOW' make[3]: `libAW.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/WINDOW' -------------------------------------------------------------------------------- Make everything in AWT make[3]: Entering directory `/build/buildd/arb-5.3/AWT' make[3]: `libAWT.a' is up to date. make[3]: Leaving directory `/build/buildd/arb-5.3/AWT' -------------------- Updating shared libraries /usr/bin/make libs make[3]: Entering directory `/build/buildd/arb-5.3' make[3]: Nothing to be done for `libs'. make[3]: Leaving directory `/build/buildd/arb-5.3' -------------------------------------------------------------------------------- Link bin/aliv3 g++ -O2 -Wl,-rpath=/usr/lib/arb/lib -o bin/aliv3 -L/build/buildd/arb-5.3/LIBLINK ALIV3/ALIV3.a SL/HELIX/HELIX.a -lARBDB -lm -------------------------------------------------------------------------------- Make everything in XML_IMPORT make[3]: Entering directory `/build/buildd/arb-5.3/XML_IMPORT' Makefile:19: XML_IMPORT compile broken atm true make[3]: Leaving directory `/build/buildd/arb-5.3/XML_IMPORT' make[2]: Leaving directory `/build/buildd/arb-5.3' export LD_LIBRARY_PATH=/build/buildd/arb-5.3/lib:${LD_LIBRARY_PATH}; \ cd HELP_SOURCE; /usr/bin/make ARBHOME=/build/buildd/arb-5.3 html make[2]: Entering directory `/build/buildd/arb-5.3/HELP_SOURCE' make[2]: Nothing to be done for `html'. make[2]: Leaving directory `/build/buildd/arb-5.3/HELP_SOURCE' make[1]: Leaving directory `/build/buildd/arb-5.3' dh_auto_test /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory `/build/buildd/arb-5.3' dh_install # remove files from arb package which are in arb-nas if [ -s debian/arb-nas.install ] ; then \ for arbfile in `sed 's?^bin/\([^[:space:]]\+\)[[:space:]]\+\(.\+\)?debian/arb/\2/\1?' debian/arb-nas.install | grep debian/` ; do \ rm -f ${arbfile} ; \ done ; \ fi # the check is needed to make sure it will not fail when doing binary-arch only builds if [ -e debian/arb-common/usr/lib/arb/SH/arb_create_debian_conffile ] ; then \ # Move SH/README to docs \ cp -a SH/README debian/arb-common/usr/share/doc/arb/README_SH ; \ # Fix permission of scripts \ chmod a+x debian/arb-common/usr/lib/arb/SH/arb_create_debian_conffile ; \ chmod a+x debian/arb-common/usr/lib/arb/lib/macro.head ; \ fi # Man page is not really needed and throws just a lintian warning # mkdir `pwd`/debian/arb/usr/share/man/man3 # perldoc PERL2ARB/ARB.pm > `pwd`/debian/arb/usr/share/man/man3/ARB.3pm make[1]: Leaving directory `/build/buildd/arb-5.3' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link dh_compress dh_fixperms debian/rules override_dh_strip make[1]: Entering directory `/build/buildd/arb-5.3' # Fix rpath issue (once libarb is installed) if [ -e debian/libarb/usr/lib/arb/lib/ARB.so ] ; then \ chrpath --delete debian/libarb/usr/lib/arb/lib/ARB.so ; \ fi dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given make[1]: Leaving directory `/build/buildd/arb-5.3' dh_makeshlibs debian/rules override_dh_shlibdeps make[1]: Entering directory `/build/buildd/arb-5.3' dh_shlibdeps -a -l debian/libarb/usr/lib dpkg-shlibdeps: warning: couldn't find library libARBDB.so needed by debian/arb/usr/lib/arb/bin/arb_ntree (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAW.so needed by debian/arb/usr/lib/arb/bin/arb_ntree (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAWT.so needed by debian/arb/usr/lib/arb/bin/arb_ntree (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libARBDB.so needed by debian/arb/usr/lib/arb/bin/aliv3 (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libARBDBPP.so needed by debian/arb/usr/lib/arb/bin/arb_edit (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libARBDB.so needed by debian/arb/usr/lib/arb/bin/arb_edit (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAW.so needed by debian/arb/usr/lib/arb/bin/arb_edit (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAWT.so needed by debian/arb/usr/lib/arb/bin/arb_edit (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libARBDB.so needed by debian/arb/usr/lib/arb/bin/arb_wetc (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAW.so needed by debian/arb/usr/lib/arb/bin/arb_wetc (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAWT.so needed by debian/arb/usr/lib/arb/bin/arb_wetc (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libARBDB.so needed by debian/arb/usr/lib/arb/bin/arb_pars (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAW.so needed by debian/arb/usr/lib/arb/bin/arb_pars (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: couldn't find library libAWT.so needed by debian/arb/usr/lib/arb/bin/arb_pars (ELF format: 'elf32-i386'; RPATH: '/usr/lib/arb/lib'). dpkg-shlibdeps: warning: dependency on libXm.so.4 could be avoided if "debian/arb/usr/lib/arb/bin/arb_ntree debian/arb/usr/lib/arb/bin/arb_edit debian/arb/usr/lib/arb/bin/arb_wetc debian/arb/usr/lib/arb/bin/arb_pars" were not uselessly linked against it (they use none of its symbols). make[1]: Leaving directory `/build/buildd/arb-5.3' dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `arb' in `../arb_5.3-3ubuntu3_i386.deb'. INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `libarb' in `../libarb_5.3-3ubuntu3_i386.deb'. INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `arb-common' in `../arb-common_5.3-3ubuntu3_all.deb'. INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `arb-doc' in `../arb-doc_5.3-3ubuntu3_all.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../arb_5.3-3ubuntu3_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build arb-5.3 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120606-2247 chroot-autobuild/build/buildd/arb_5.3-3ubuntu3_i386.deb: new debian package, version 2.0. size 783160 bytes: control archive= 1939 bytes. 39 bytes, 2 lines conffiles 1247 bytes, 23 lines control 1089 bytes, 18 lines md5sums 743 bytes, 31 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh 118 bytes, 10 lines * prerm #!/bin/sh Package: arb Version: 5.3-3ubuntu3 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 1822 Depends: arb-common (= 5.3-3ubuntu3), fastdnaml (>= 1.2.2-4), libarb (= 5.3-3ubuntu3), openssh-client, phylip (>= 3.6b), readseq (>= 1-1), transfig, tree-puzzle (>= 5.0-3), libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libmotif4, libstdc++6 (>= 4.6), libxt6 Recommends: bioperl, xfig Suggests: arb-database, gnuplot, gv, phyml Section: non-free/science Priority: extra Homepage: http://www.arb-home.de/ Description: Integrated package for sequence database handling and analysis The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the respective sequence entries is structured according to phylogeny or other user defined criteria. . The ARB project (latin, "arbor"=tree) is a joint initiative of the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation http://wwwbode.informatik.tu-muenchen.de/ of the Technical University of Munich. chroot-autobuild/build/buildd/libarb_5.3-3ubuntu3_i386.deb: new debian package, version 2.0. size 850274 bytes: control archive= 1068 bytes. 1097 bytes, 25 lines control 516 bytes, 8 lines md5sums Package: libarb Source: arb Version: 5.3-3ubuntu3 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 1882 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6) Recommends: arb Section: non-free/science Priority: extra Homepage: http://www.arb-home.de/ Description: Integrated package for sequence database handling and analysis The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the respective sequence entries is structured according to phylogeny or other user defined criteria. . The ARB project (latin, "arbor"=tree) is a joint initiative of the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation http://wwwbode.informatik.tu-muenchen.de/ of the Technical University of Munich. . This package contains the dynamic libraries which are used by arb. chroot-autobuild/build/buildd/arb-common_5.3-3ubuntu3_all.deb: new debian package, version 2.0. size 5137890 bytes: control archive= 35962 bytes. 22 bytes, 1 lines conffiles 2177 bytes, 77 lines * config #!/bin/sh 897 bytes, 19 lines control 92735 bytes, 1210 lines md5sums 1318 bytes, 53 lines * postinst #!/bin/sh 373 bytes, 18 lines * postrm #!/bin/sh 555 bytes, 23 lines * preinst #!/bin/sh 191 bytes, 6 lines templates Package: arb-common Source: arb Version: 5.3-3ubuntu3 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 21819 Depends: adduser, arb-doc (= 5.3-3ubuntu3), ghostscript | postscript-preview, gv | postscript-viewer, perl-modules, debconf (>= 0.5) | debconf-2.0, perl Recommends: arb Section: non-free/science Priority: extra Homepage: http://www.arb-home.de/ Description: Integrated package for sequence database handling and analysis The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the respective sequence entries is structured according to phylogeny or other user defined criteria. . This package contains the architecture independent scripts of Arb. chroot-autobuild/build/buildd/arb-doc_5.3-3ubuntu3_all.deb: new debian package, version 2.0. size 563314 bytes: control archive= 9057 bytes. 794 bytes, 19 lines control 22382 bytes, 306 lines md5sums Package: arb-doc Source: arb Version: 5.3-3ubuntu3 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 1997 Depends: ghostscript | postscript-preview, gv | postscript-viewer Suggests: arb Section: non-free/doc Priority: extra Homepage: http://www.arb-home.de/ Description: Integrated package for sequence database handling and analysis The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the respective sequence entries is structured according to phylogeny or other user defined criteria. . This package contains the documentation for the package arb. chroot-autobuild/build/buildd/arb_5.3-3ubuntu3_i386.deb: drwxr-xr-x root/root 0 2012-06-06 22:47 ./ drwxr-xr-x root/root 0 2012-06-06 22:47 ./etc/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./etc/arb/ -rw-r--r-- root/root 4729 2012-01-05 18:53 ./etc/arb/arb_tcp.dat -rw-r--r-- root/root 553 2012-01-05 18:53 ./etc/arb/arb.conf drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/man/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/man/man1/ -rw-r--r-- root/root 660 2012-06-06 22:47 ./usr/share/man/man1/arb.1.gz -rw-r--r-- root/root 530 2012-06-06 22:47 ./usr/share/man/man1/arb-add-pt-server.1.gz -rw-r--r-- root/root 544 2012-06-06 22:47 ./usr/share/man/man1/arb-kill.1.gz drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/arb/ -rw-r--r-- root/root 534 2012-01-05 18:53 ./usr/share/arb/arb.xpm drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/menu/ -rw-r--r-- root/root 135 2012-01-05 18:53 ./usr/share/menu/arb drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/doc/arb/ -rw-r--r-- root/root 6004 2012-03-02 11:33 ./usr/share/doc/arb/changelog.Debian.gz -rw-r--r-- root/root 2989 2012-01-05 18:53 ./usr/share/doc/arb/README.Debian -rw-r--r-- root/root 10842 2012-01-05 18:53 ./usr/share/doc/arb/copyright drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/lib/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/lib/arb/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/ -rwxr-xr-x root/root 55008 2012-06-06 22:47 ./usr/lib/arb/bin/aliv3 -rwxr-xr-x root/root 22416 2012-06-06 22:47 ./usr/lib/arb/bin/arb_treegen -rwxr-xr-x root/root 26280 2012-06-06 22:47 ./usr/lib/arb/bin/arb_wetc -rwxr-xr-x root/root 264200 2012-06-06 22:47 ./usr/lib/arb/bin/arb_edit -rwxr-xr-x root/root 170668 2012-06-06 22:47 ./usr/lib/arb/bin/arb_pars -rwxr-xr-x root/root 1150892 2012-06-06 22:47 ./usr/lib/arb/bin/arb_ntree -rwxr-xr-x root/root 75600 2012-06-06 22:47 ./usr/lib/arb/bin/arb_help2xml drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/bin/ -rwxr-xr-x root/root 2042 2012-01-05 18:53 ./usr/bin/arb-add-pt-server -rwxr-xr-x root/root 1516 2012-01-05 18:53 ./usr/bin/arb -rwxr-xr-x root/root 796 2012-01-05 18:53 ./usr/bin/arb-kill lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_textedit -> ../SH/arb_textedit lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnadist -> ../../phylip/bin/dnadist lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dollop -> ../../phylip/bin/dollop lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnaml -> ../../phylip/bin/dnaml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/protdist -> ../../phylip/bin/protdist lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/seqboot -> ../../phylip/bin/seqboot lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/listMarkedSpecies.pl -> ../PERL_SCRIPTS/SPECIES/listMarkedSpecies.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/treedist -> ../../phylip/bin/treedist lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/listDiff.pl -> ../PERL_SCRIPTS/GENERAL/listDiff.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/markSpecies.pl -> ../PERL_SCRIPTS/SPECIES/markSpecies.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/consense -> ../../phylip/bin/consense lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/retree -> ../../phylip/bin/retree lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/promlk -> ../../phylip/bin/promlk lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_phyml -> ../SH/arb_phyml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_textprint -> ../SH/arb_textprint lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/pars -> ../../phylip/bin/pars lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/factor -> ../../phylip/bin/factor lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/beautifyNewick.pl -> ../PERL_SCRIPTS/BIOPERL/beautifyNewick.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/kitsch -> ../../phylip/bin/kitsch lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/contrast -> ../../phylip/bin/contrast lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_repair -> ../SH/arb_repair lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_fastdnaml -> ../SH/arb_fastdnaml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_echo -> ../SH/arb_echo lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/penny -> ../../phylip/bin/penny lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_proml -> ../SH/arb_proml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/restml -> ../../phylip/bin/restml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnamlk -> ../../phylip/bin/dnamlk lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnapars -> ../../phylip/bin/dnapars lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/drawgram -> ../../phylip/bin/drawgram lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnainvar -> ../../phylip/bin/dnainvar lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/contml -> ../../phylip/bin/contml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb -> ../SH/arb lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/protpars -> ../../phylip/bin/protpars lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/proml -> ../../phylip/bin/proml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/mix -> ../../phylip/bin/mix lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/example_batch_probe_match.sh -> ../SH/example_batch_probe_match.sh lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_readseq -> ../../../bin/readseq lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/fastdnaml -> ../../../bin/fastDNAml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnacomp -> ../../phylip/bin/dnacomp lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_dnapars -> ../SH/arb_dnapars lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/raxml2arb.pl -> ../PERL_SCRIPTS/ARBTOOLS/raxml2arb.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_bootstrap -> ../SH/arb_bootstrap lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/neighbor -> ../../phylip/bin/neighbor lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_raxml -> ../SH/arb_raxml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnapenny -> ../../phylip/bin/dnapenny lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/move -> ../../phylip/bin/move lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/SAI_demo.pl -> ../PERL_SCRIPTS/SAI/SAI_demo.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/embl_gen_long_features.pl -> ../PERL_SCRIPTS/ARBTOOLS/IFTHELP/embl_gen_long_features.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dolpenny -> ../../phylip/bin/dolpenny lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_panic -> ../SH/arb_panic lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/gendist -> ../../phylip/bin/gendist lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_ign -> ../SH/arb_ign lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/clustalw -> ../../../bin/clustalw lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dnamove -> ../../phylip/bin/dnamove lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/restdist -> ../../phylip/bin/restdist lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/puzzle -> ../../../bin/tree-puzzle lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dszmconnect.pl -> ../SH/dszmconnect.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_ludwig -> ../SH/arb_ludwig lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/drawtree -> ../../phylip/bin/drawtree lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_wait -> ../SH/arb_wait lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_installubuntu4arb.sh -> ../SH/arb_installubuntu4arb.sh lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/dolmove -> ../../phylip/bin/dolmove lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_trace -> ../SH/arb_trace lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/clique -> ../../phylip/bin/clique lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_protpars -> ../SH/arb_protpars lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/import_proteomdata.pl -> ../PERL_SCRIPTS/GENOME/import_proteomdata.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/fitch -> ../../phylip/bin/fitch lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/format_dssp.pl -> ../PERL_SCRIPTS/ARBTOOLS/IFTHELP/format_dssp.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/genbank_gen_long_features.pl -> ../PERL_SCRIPTS/ARBTOOLS/IFTHELP/genbank_gen_long_features.pl lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_sleep -> ../SH/arb_sleep lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_clean -> ../SH/arb_clean lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_who -> ../SH/arb_who lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/protml -> ../../../bin/protml lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/bin/arb_remote -> ../SH/arb_remote chroot-autobuild/build/buildd/libarb_5.3-3ubuntu3_i386.deb: drwxr-xr-x root/root 0 2012-06-06 22:47 ./ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 135 2012-01-05 18:53 ./usr/share/lintian/overrides/libarb drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/doc/libarb/ -rw-r--r-- root/root 6004 2012-03-02 11:33 ./usr/share/doc/libarb/changelog.Debian.gz -rw-r--r-- root/root 10842 2012-01-05 18:53 ./usr/share/doc/libarb/copyright drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/lib/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/lib/arb/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/ -rw-r--r-- root/root 63332 2012-06-06 22:47 ./usr/lib/arb/lib/libARBDBPP.so -rw-r--r-- root/root 468060 2012-06-06 22:47 ./usr/lib/arb/lib/libARBDO.so -rw-r--r-- root/root 322808 2012-06-06 22:47 ./usr/lib/arb/lib/libAW.so -rw-r--r-- root/root 541976 2012-06-06 22:47 ./usr/lib/arb/lib/libAWT.so -rw-r--r-- root/root 468092 2012-06-06 22:47 ./usr/lib/arb/lib/libARBDB.so chroot-autobuild/build/buildd/arb-common_5.3-3ubuntu3_all.deb: drwxr-xr-x root/root 0 2012-06-06 22:47 ./ drwxr-xr-x root/root 0 2012-06-06 22:47 ./etc/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./etc/arb/ -rw-r--r-- root/root 38244 2012-06-06 22:45 ./etc/arb/ARB_GDEmenus drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/man/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/man/man1/ -rw-r--r-- root/root 475 2012-06-06 22:47 ./usr/share/man/man1/arb_clean.1.gz drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/arb/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/share/arb/lib/ drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/share/arb/lib/pixmaps/ -rw-r--r-- root/root 737 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/equal.xpm -rw-r--r-- root/root 266 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/leftright_small.bitmap -rw-r--r-- root/root 299 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/rectangle.bitmap -rw-r--r-- root/root 2952 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/molText.xpm -rw-r--r-- root/root 233 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/no.bitmap drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/share/arb/lib/pixmaps/merge/ -rw-r--r-- root/root 3825 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/merge/icon.bitmap -rw-r--r-- root/root 4237 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/merge/icon_vertical.bitmap -rw-r--r-- root/root 536 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/nearestn.bitmap -rw-r--r-- root/root 2116 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/notEqual.xpm -rw-r--r-- root/root 546 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/listdisp.bitmap -rw-r--r-- root/root 6385 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/basesText.xpm drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/share/arb/lib/pixmaps/pgt/ -rw-r--r-- root/root 1436 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/pgt/exit.xpm -rw-r--r-- root/root 691 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/pgt/help22.xpm -rw-r--r-- root/root 1100 2009-06-08 14:28 ./usr/share/arb/lib/pixmaps/pgt/markall22.xpm -rw-r--r-- root/root 1577 2009-06-08 14:28 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2011-11-10 15:19 ./usr/lib/arb/SH/arb_installubuntu4arb.sh -rwxr-xr-x root/root 739 2009-09-04 11:25 ./usr/lib/arb/SH/arb_trace -rwxr-xr-x root/root 1208 2009-06-08 14:28 ./usr/lib/arb/SH/arb_protpars -rwxr-xr-x root/root 78 2009-06-08 14:28 ./usr/lib/arb/SH/arb_sleep -rwxr-xr-x root/root 451 2012-06-06 22:43 ./usr/lib/arb/SH/arb_clean -rwxr-xr-x root/root 263 2009-06-08 14:28 ./usr/lib/arb/SH/arb_who -rwxr-xr-x root/root 323 2009-06-08 14:28 ./usr/lib/arb/SH/arb_remote drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/ drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/test/ -rw-r--r-- root/root 2877 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/test/testScripts.pl -rw-r--r-- root/root 461 2009-08-07 12:04 ./usr/lib/arb/PERL_SCRIPTS/test/Makefile drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/SAI/ -rw-r--r-- root/root 1986 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/SAI/SAI.pm -rwxr-xr-x root/root 1871 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/SAI/SAI_demo.pl drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/ARBTOOLS/ drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/ARBTOOLS/IFTHELP/ -rwxr-xr-x root/root 2280 2009-06-16 14:34 ./usr/lib/arb/PERL_SCRIPTS/ARBTOOLS/IFTHELP/embl_gen_long_features.pl -rwxr-xr-x root/root 3145 2010-09-05 16:32 ./usr/lib/arb/PERL_SCRIPTS/ARBTOOLS/IFTHELP/format_dssp.pl -rwxr-xr-x root/root 2673 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/ARBTOOLS/IFTHELP/genbank_gen_long_features.pl -rwxr-xr-x root/root 6365 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/ARBTOOLS/raxml2arb.pl drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/GENERAL/ -rwxr-xr-x root/root 2584 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/GENERAL/listDiff.pl drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/BIOPERL/ -rwxr-xr-x root/root 3110 2010-09-05 16:32 ./usr/lib/arb/PERL_SCRIPTS/BIOPERL/beautifyNewick.pl -rw-r--r-- root/root 107 2009-06-16 14:34 ./usr/lib/arb/PERL_SCRIPTS/BIOPERL/README drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/GENOME/ -rw-r--r-- root/root 5612 2010-09-05 16:32 ./usr/lib/arb/PERL_SCRIPTS/GENOME/GI.pm -rwxr-xr-x root/root 3535 2010-09-05 16:32 ./usr/lib/arb/PERL_SCRIPTS/GENOME/import_proteomdata.pl drwxr-xr-x root/root 0 2012-06-06 22:43 ./usr/lib/arb/PERL_SCRIPTS/SPECIES/ -rwxr-xr-x root/root 1642 2009-06-08 14:28 ./usr/lib/arb/PERL_SCRIPTS/SPECIES/listMarkedSpecies.pl -rwxr-xr-x root/root 4851 2011-11-10 15:19 ./usr/lib/arb/PERL_SCRIPTS/SPECIES/markSpecies.pl -rw-r--r-- root/root 1270 2010-09-05 16:32 ./usr/lib/arb/PERL_SCRIPTS/SPECIES/tools.pm drwxr-xr-x root/root 0 2012-06-06 22:47 ./usr/bin/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./var/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./var/lib/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./var/lib/arb/ drwxr-xr-x root/root 0 2012-06-06 22:47 ./var/lib/arb/nas/ -rw-r--r-- root/root 43 2009-06-08 14:28 ./var/lib/arb/nas/names.dat.template -rw-r--r-- root/root 43 2012-06-06 22:43 ./var/lib/arb/nas/names.dat drwxr-xr-x root/root 0 2012-06-06 22:43 ./var/lib/arb/pts/ lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/GDEHELP/ARB_GDEmenus -> /etc/arb/ARB_GDEmenus lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/help/GDEHELP -> ../../GDEHELP lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/nas -> /var/lib/arb/nas lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/pixmaps -> ../../../share/arb/lib/pixmaps lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/submit -> ../../../share/doc/arb/submit lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/pts -> /var/lib/arb/pts lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/help_html -> ../../../share/doc/arb/html lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/inputMasks/format.readme -> ../help/input_mask_format.hlp lrwxrwxrwx root/root 0 2012-06-06 22:47 ./usr/lib/arb/lib/pictures -> 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root/root 0 2012-06-06 22:47 ./usr/share/doc/arb/html/index.html -> manual.html arb_5.3-3ubuntu3_i386.changes: Format: 1.8 Date: Fri, 02 Mar 2012 11:32:45 +0000 Source: arb Binary: arb libarb arb-common arb-doc Architecture: i386 all Version: 5.3-3ubuntu3 Distribution: precise Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Tim Booth Description: arb - Integrated package for sequence database handling and analysis arb-common - Integrated package for sequence database handling and analysis arb-doc - Integrated package for sequence database handling and analysis libarb - Integrated package for sequence database handling and analysis Changes: arb (5.3-3ubuntu3) lucid; urgency=low . * Prune build deps (jdk) and rebuild for PPA * Revert bioperl dependency to old name Checksums-Sha1: 3ba6591f628bb248c0fbf93af0e718debbe517ba 783160 arb_5.3-3ubuntu3_i386.deb d1c7d3104fc0671bbcde7ee72922e6a52eab6823 850274 libarb_5.3-3ubuntu3_i386.deb 48f3f2d86b834e14b616c9f4a496b14526c2d24e 5137890 arb-common_5.3-3ubuntu3_all.deb 9c3ba829d1376141fccb907df187e5315ac82cbb 563314 arb-doc_5.3-3ubuntu3_all.deb Checksums-Sha256: 92e5a20481b405bdad270a2d329f1af0435a6aff7a96e925721cac6d1c3480c8 783160 arb_5.3-3ubuntu3_i386.deb adb7c4e61ac082b9ddd5f6c02d6c659d992fbf4f867b40a064feb348d4451373 850274 libarb_5.3-3ubuntu3_i386.deb 952fe3e323094515cc3e6eab4f1c232c0eed5710418170d95ea2bd11d091f028 5137890 arb-common_5.3-3ubuntu3_all.deb 713af256b6ac2437be1a712384c5001fd70499fce06b91fb95a2bd7925203787 563314 arb-doc_5.3-3ubuntu3_all.deb Files: 005886318dd50dec7cc12ff1036ab3e3 783160 non-free/science extra arb_5.3-3ubuntu3_i386.deb f0935936c889f6c29af60731b6ab9dd8 850274 non-free/science extra libarb_5.3-3ubuntu3_i386.deb ffddfb35a6f202a2b2b3e58447e51456 5137890 non-free/science extra arb-common_5.3-3ubuntu3_all.deb e041909135c58cd87082d2224c4c3930 563314 non-free/doc extra arb-doc_5.3-3ubuntu3_all.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/arb-5.3 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libxmu6 groff-base libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libxaw7 lynx libxpm4 x11-common libjpeg8-dev libx11-dev libcroco3 x11proto-print-dev libxt-dev libxcb-glx0 libxaw7-dev chrpath libgettextpo0 libfreetype6 libglew1.5 libice-dev libgl1-mesa-dev libglapi-mesa time libxcb1 libgl1-mesa-glx x11proto-input-dev libjpeg-turbo8-dev bioperl libio-string-perl html2text libpthread-stubs0 debhelper libfontconfig1 libtiffxx0c2 xutils-dev freeglut3-dev libxslt1.1 libxpm-dev libmagic1 libtiff4 libexpat1 bsdmainutils libglw1-mesa-dev libxau6 libbsd0 xsltproc libx11-xcb1 libx11-6 xtrans-dev xorg-sgml-doctools libglu1-mesa libmotif-dev x11proto-core-dev libxdamage1 libxcb1-dev libxt6 libdata-stag-perl libxfixes3 libxdmcp6 libxmu-dev libjpeg-turbo8 libglew1.5-dev libmotif4 libxml2-utils po-debconf libglw1-mesa libxml2 x11proto-xext-dev libjpeg8 man-db libxxf86vm1 libice6 x11proto-kb-dev intltool-debian libjpeg-dev libxp6 libxrender1 mesa-common-dev libxext-dev libpthread-stubs0-dev dh-apparmor freeglut3 ucf libxau-dev libxmu-headers gettext-base lynx-cur libtiff4-dev libpng12-dev libunistring0 libglu1-mesa-dev libbio-perl-perl libsm6 libxft2 libxext6 libpipeline1 libdrm-dev libkms1 libsm-dev (Reading database ... 18743 files and directories currently installed.) Removing lynx ... Removing libxaw7-dev ... Removing chrpath ... Removing time ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package time should be updated. Removing bioperl ... Removing debhelper ... Removing xutils-dev ... Removing freeglut3-dev ... Removing libxpm-dev ... Removing libglw1-mesa-dev ... Removing xsltproc ... Removing libmotif-dev ... Removing libxmu-dev ... Removing libglew1.5-dev ... Removing libmotif4 ... Purging configuration files for libmotif4 ... Removing libxml2-utils ... Removing po-debconf ... Removing libglw1-mesa ... Purging configuration files for libglw1-mesa ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing libjpeg-dev ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing dh-apparmor ... Removing freeglut3 ... Purging configuration files for freeglut3 ... Removing libxmu-headers ... Removing lynx-cur ... Purging configuration files for lynx-cur ... Removing libtiff4-dev ... Removing libpng12-dev ... Removing libglu1-mesa-dev ... Removing libbio-perl-perl ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing file ... Removing zlib1g-dev ... Removing libxaw7 ... Purging configuration files for libxaw7 ... Removing libxpm4 ... Purging configuration files for libxpm4 ... Removing libjpeg8-dev ... Removing x11proto-print-dev ... Removing libxt-dev ... Removing libgettextpo0 ... Removing libglew1.5 ... Purging configuration files for libglew1.5 ... Removing libgl1-mesa-dev ... Removing libjpeg-turbo8-dev ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libtiffxx0c2 ... Purging configuration files for libtiffxx0c2 ... Removing libxslt1.1 ... Purging configuration files for libxslt1.1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libtiff4 ... Purging configuration files for libtiff4 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libbsd0 ... Purging configuration files for libbsd0 ... Removing libglu1-mesa ... Purging configuration files for libglu1-mesa ... Removing libdata-stag-perl ... Removing libjpeg8 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing mesa-common-dev ... Removing libxext-dev ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libdrm-dev ... Removing libkms1 ... Purging configuration files for libkms1 ... Removing libsm-dev ... Removing libxmu6 ... Purging configuration files for libxmu6 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing libx11-dev ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libgl1-mesa-glx ... Purging configuration files for libgl1-mesa-glx ... Removing libio-string-perl ... Removing libx11-xcb1 ... Purging configuration files for libx11-xcb1 ... Removing xtrans-dev ... Removing libxdamage1 ... Purging configuration files for libxdamage1 ... Removing libxcb1-dev ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libxfixes3 ... Purging configuration files for libxfixes3 ... Removing libjpeg-turbo8 ... Purging configuration files for libjpeg-turbo8 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing x11proto-xext-dev ... Removing libxxf86vm1 ... Purging configuration files for libxxf86vm1 ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libxdmcp-dev ... Removing libxcb-glx0 ... Purging configuration files for libxcb-glx0 ... Removing libglapi-mesa ... Purging configuration files for libglapi-mesa ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing x11proto-core-dev ... Removing libice6 ... Purging configuration files for libice6 ... Removing libx11-data ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing xorg-sgml-doctools ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20120606-2247 Build needed 00:04:33, 113344k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '817fd17f3f50f46b193abd8857aef625795e58e7'] Scanning for processes to kill in build /home/buildd/build-817fd17f3f50f46b193abd8857aef625795e58e7/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '817fd17f3f50f46b193abd8857aef625795e58e7'] Unmounting chroot for build 817fd17f3f50f46b193abd8857aef625795e58e7... none /home/buildd/build-817fd17f3f50f46b193abd8857aef625795e58e7/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-817fd17f3f50f46b193abd8857aef625795e58e7/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-817fd17f3f50f46b193abd8857aef625795e58e7/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-817fd17f3f50f46b193abd8857aef625795e58e7/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '817fd17f3f50f46b193abd8857aef625795e58e7'] Removing build 817fd17f3f50f46b193abd8857aef625795e58e7