RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'f060d6500dfbed4adcec86f391852321a7ae89ad', '/home/buildd/filecache-default/c021ff3d3373fb2201b3008c0ece6808393ff246'] Uncompressing the tarball... Synching the system clock with the buildd NTP service... 15 Oct 13:24:43 ntpdate[3398]: step time server 10.211.37.1 offset -5336780.425257 sec Unpacking chroot for build f060d6500dfbed4adcec86f391852321a7ae89ad RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'f060d6500dfbed4adcec86f391852321a7ae89ad'] Mounting chroot for build f060d6500dfbed4adcec86f391852321a7ae89ad RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'f060d6500dfbed4adcec86f391852321a7ae89ad', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-f060d6500dfbed4adcec86f391852321a7ae89ad RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'f060d6500dfbed4adcec86f391852321a7ae89ad', 'amd64'] Updating debian chroot for build f060d6500dfbed4adcec86f391852321a7ae89ad Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Get:5 http://ftpmaster.internal precise-security Release [49.6 kB] Get:6 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:7 http://ftpmaster.internal precise/main amd64 Packages [1273 kB] Get:8 http://ftpmaster.internal precise/restricted amd64 Packages [8452 B] Get:9 http://ftpmaster.internal precise/universe amd64 Packages [4786 kB] Ign http://ppa.launchpad.net precise InRelease Get:10 http://ppa.launchpad.net precise Release.gpg [316 B] Get:11 http://ppa.launchpad.net precise Release [11.9 kB] Ign http://ppa.launchpad.net precise Release Get:12 http://ppa.launchpad.net precise/main amd64 Packages [4728 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:13 http://ftpmaster.internal precise/multiverse amd64 Packages [119 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main amd64 Packages [155 kB] Get:19 http://ftpmaster.internal precise-security/restricted amd64 Packages [3969 B] Get:20 http://ftpmaster.internal precise-security/universe amd64 Packages [38.7 kB] Get:21 http://ftpmaster.internal precise-security/multiverse amd64 Packages [1155 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main amd64 Packages [366 kB] Get:27 http://ftpmaster.internal precise-updates/restricted amd64 Packages [6755 B] Get:28 http://ftpmaster.internal precise-updates/universe amd64 Packages [121 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse amd64 Packages [2365 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [73.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [587 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [24.2 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [177 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [1600 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [72.7 kB] Fetched 11.6 MB in 4s (2809 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils udev upstart 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 35.8 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files amd64 6.5ubuntu6.2 [69.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl amd64 5.14.2-6ubuntu2.1 [4416 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base amd64 5.14.2-6ubuntu2.1 [1498 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 amd64 0.8.16~exp12ubuntu10.2 [932 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt amd64 0.8.16~exp12ubuntu10.2 [1092 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 amd64 1.0.1-4ubuntu5.3 [1011 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 amd64 2.32.3-0ubuntu1 [1199 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 amd64 175-0ubuntu9.1 [30.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 amd64 1.5.0-3ubuntu0.1 [280 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 amd64 2.10-1ubuntu1.1 [43.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 amd64 2.12.14-5ubuntu3.1 [459 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 amd64 1.10+dfsg~beta1-2ubuntu0.3 [80.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 amd64 1.10+dfsg~beta1-2ubuntu0.3 [118 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 amd64 1.10+dfsg~beta1-2ubuntu0.3 [355 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 amd64 1.10+dfsg~beta1-2ubuntu0.3 [23.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 amd64 2.1.25.dfsg1-3ubuntu0.1 [69.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 amd64 2.4.28-1.1ubuntu4.1 [186 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal amd64 2.7.3-0ubuntu3.1 [1741 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils amd64 2.88dsf-13.10ubuntu11.1 [60.2 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts amd64 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart amd64 1.5-0ubuntu7 [311 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main udev amd64 175-0ubuntu9.1 [323 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https amd64 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev amd64 3.2.0-29.46 [871 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main openssl amd64 1.0.1-4ubuntu5.3 [523 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 0s (33.1 MB/s) (Reading database ... 12243 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12243 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12243 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_amd64.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12243 files and directories currently installed.) Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_amd64.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_amd64.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_amd64.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_amd64.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_amd64.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_amd64.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_amd64.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_amd64.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_amd64.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_amd64.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_amd64.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_amd64.deb) ... Unpacking replacement openssl ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'f060d6500dfbed4adcec86f391852321a7ae89ad', 'amd64', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PPA', '--architecture=amd64', '--comp=main', 'qiime_1.5.0+repack-2ubuntu4.dsc'] Initiating build f060d6500dfbed4adcec86f391852321a7ae89ad with 2 processor cores. Automatic build of qiime_1.5.0+repack-2ubuntu4 on louvi by sbuild/amd64 1.170.5 Build started at 20120814-1901 ****************************************************************************** qiime_1.5.0+repack-2ubuntu4.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), python-all-dev (>= 2.7), python-cogent (>= 1.5.1), python-numpy, python-matplotlib, ghc6, python-sphinx Checking for already installed source dependencies... debhelper: missing python-all-dev: missing python-cogent: missing python-numpy: missing python-matplotlib: missing ghc6: missing python-sphinx: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev python-cogent python-numpy python-matplotlib ghc6 python-sphinx Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor docutils-common file fontconfig fontconfig-config gettext gettext-base ghc gir1.2-glib-2.0 groff-base html2text intltool-debian libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libbsd-dev libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libffi-dev libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgettextpo0 libgfortran3 libgirepository-1.0-1 libgmp-dev libgmpxx4ldbl libgtk2.0-0 libgtk2.0-common libjasper1 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3gf libmagic1 libpango1.0-0 libpipeline1 libpixman-1-0 libpython2.7 libssl-dev libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-cairo python-dateutil python-dev python-docutils python-gi python-gobject python-gobject-2 python-jinja2 python-markupsafe python-matplotlib-data python-pygments python-pyparsing python-roman python-support python-tz python2.7 python2.7-dev sgml-base shared-mime-info sphinx-common tcl8.5 tk8.5 ttf-dejavu-core ttf-lyx ucf x11-common xml-core zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc ghc-prof ghc-doc haskell-doc llvm-3.0 groff cups-common libgmp10-doc libmpfr-dev librsvg2-common gvfs libjasper-runtime javascript-common ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french ttf-linux-libertine python-gi-cairo python-gobject-2-dbg python-jinja2-doc dvipng ipython python-configobj python-excelerator python-gtk2 python-matplotlib-doc python-qt3 python-qt4 python-scipy python-traits python-wxgtk2.8 texlive-extra-utils texlive-latex-extra python-numpy-doc python-numpy-dbg python-nose gfortran ttf-bitstream-vera jsmath libjs-mathjax texlive-fonts-recommended python2.7-doc sgml-base-doc tclreadline Recommended packages: curl wget lynx-cur hicolor-icon-theme libgtk2.0-bin libssl-doc libmail-sendmail-perl python-imaging libpaper-utils python-lxml docutils-doc python-pkg-resources python-glade2 python-chardet sphinx-doc xterm x-terminal-emulator The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor docutils-common file fontconfig fontconfig-config gettext gettext-base ghc ghc6 gir1.2-glib-2.0 groff-base html2text intltool-debian libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libbsd-dev libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libffi-dev libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgettextpo0 libgfortran3 libgirepository-1.0-1 libgmp-dev libgmpxx4ldbl libgtk2.0-0 libgtk2.0-common libjasper1 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3gf libmagic1 libpango1.0-0 libpipeline1 libpixman-1-0 libpython2.7 libssl-dev libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-all-dev python-cairo python-cogent python-dateutil python-dev python-docutils python-gi python-gobject python-gobject-2 python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-numpy python-pygments python-pyparsing python-roman python-sphinx python-support python-tz python2.7 python2.7-dev sgml-base shared-mime-info sphinx-common tcl8.5 tk8.5 ttf-dejavu-core ttf-lyx ucf x11-common xml-core zlib1g-dev 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After this operation, 458 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libbsd0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libatk1.0-data libatk1.0-0 libavahi-common-data libavahi-common3 libavahi-client3 libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpixman-1-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libcroco3 libcups2 libdatrie1 libjpeg-turbo8 libjpeg8 libjasper1 libtiff4 libgdk-pixbuf2.0-common libgdk-pixbuf2.0-0 libunistring0 libgettextpo0 libgfortran3 libgmpxx4ldbl libgtk2.0-common libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libxcomposite1 libxfixes3 libxcursor1 libxdamage1 libxi6 libxinerama1 libxrandr2 shared-mime-info libgtk2.0-0 x11-common libxss1 ttf-lyx libmagic1 file mime-support python2.7 python bsdmainutils gettext-base libgirepository-1.0-1 gir1.2-glib-2.0 groff-base man-db python-gi sgml-base xml-core html2text gettext intltool-debian po-debconf dh-apparmor debhelper docutils-common libgmp-dev libffi-dev libbsd-dev ghc ghc6 libblas3gf libexpat1-dev libjs-jquery libjs-underscore libjs-sphinxdoc liblapack3gf libpython2.7 zlib1g-dev libssl-dev python-all python2.7-dev python-dev python-all-dev python-cairo python-dateutil python-roman python-docutils python-gobject-2 python-gobject python-markupsafe python-jinja2 python-matplotlib-data python-pyparsing python-tz python-numpy python-support tcl8.5 tk8.5 python-matplotlib python-pygments sphinx-common python-sphinx python-cogent Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libbsd0 amd64 0.3.0-2 [31.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 amd64 1.2.1-1 [26.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libxau6 amd64 1:1.0.6-4 [8392 B] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 amd64 1:1.1.0-4 [12.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 amd64 1.8.1-1 [44.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 amd64 2:1.4.99.1-0ubuntu2 [762 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxext6 amd64 2:1.3.0-3build1 [33.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 amd64 2.7.8.dfsg-5.1ubuntu4.1 [673 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libatk1.0-data all 2.4.0-0ubuntu1 [12.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libatk1.0-0 amd64 2.4.0-0ubuntu1 [60.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libavahi-common-data amd64 0.6.30-5ubuntu2 [22.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libavahi-common3 amd64 0.6.30-5ubuntu2 [25.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libavahi-client3 amd64 0.6.30-5ubuntu2 [30.3 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1 amd64 2.0.1-7.2ubuntu1.1 [131 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 amd64 2.4.8-1ubuntu2 [343 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core all 2.33-2ubuntu1 [1552 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config all 2.8.0-3ubuntu9 [44.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 amd64 2.8.0-3ubuntu9 [124 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libpixman-1-0 amd64 0.24.4-1 [228 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libxcb-render0 amd64 1.8.1-1 [13.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libxcb-shm0 amd64 1.8.1-1 [5510 B] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 amd64 1:0.9.6-2build1 [20.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main libcairo2 amd64 1.10.2-6.1ubuntu3 [467 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 amd64 0.6.5-1 [99.3 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-updates/main libcups2 amd64 1.5.3-0ubuntu3 [172 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libdatrie1 amd64 0.2.5-3 [16.4 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8 amd64 1.1.90+svn733-0ubuntu4.1 [111 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 amd64 8c-2ubuntu7 [2112 B] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libjasper1 amd64 1.900.1-13 [154 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise-security/main libtiff4 amd64 3.9.5-2ubuntu1.2 [144 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libgdk-pixbuf2.0-common all 2.26.1-1 [7818 B] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libgdk-pixbuf2.0-0 amd64 2.26.1-1 [201 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 amd64 0.9.3-5 [427 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 amd64 0.18.1.1-5ubuntu3 [120 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libgfortran3 amd64 4.6.3-1ubuntu5 [357 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libgmpxx4ldbl amd64 2:5.0.2+dfsg-2ubuntu1 [8720 B] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libgtk2.0-common all 2.24.10-0ubuntu6 [119 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libthai-data all 0.1.16-3 [179 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libthai0 amd64 0.1.16-3 [19.7 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libxft2 amd64 2.2.0-3ubuntu2 [42.3 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main fontconfig amd64 2.8.0-3ubuntu9 [155 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise-updates/main libpango1.0-0 amd64 1.30.0-0ubuntu3.1 [363 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libxcomposite1 amd64 1:0.4.3-2build1 [7708 B] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libxfixes3 amd64 1:5.0-4ubuntu4 [12.6 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libxcursor1 amd64 1:1.1.12-1 [22.6 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libxdamage1 amd64 1:1.1.3-2build1 [7560 B] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libxi6 amd64 2:1.6.0-0ubuntu2 [30.1 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libxinerama1 amd64 2:1.1.1-3build1 [8022 B] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libxrandr2 amd64 2:1.3.2-2 [17.9 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise-updates/main shared-mime-info amd64 1.0-0ubuntu4.1 [496 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libgtk2.0-0 amd64 2.24.10-0ubuntu6 [2674 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main x11-common all 1:7.6+12ubuntu1 [57.7 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main libxss1 amd64 1:1.2.1-2 [8646 B] Get:56 http://ftpmaster.internal/ubuntu/ precise/universe ttf-lyx all 2.0.2-1ubuntu2 [151 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 amd64 5.09-2 [217 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main file amd64 5.09-2 [19.7 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7 amd64 2.7.3-0ubuntu3.1 [2673 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main python amd64 2.7.3-0ubuntu2 [166 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils amd64 8.2.3ubuntu1 [200 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main gettext-base amd64 0.18.1.1-5ubuntu3 [80.0 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libgirepository-1.0-1 amd64 1.32.0-1 [101 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main gir1.2-glib-2.0 amd64 1.32.0-1 [157 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main groff-base amd64 1.21-7 [1046 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main man-db amd64 2.6.1-2 [756 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise-updates/main python-gi amd64 3.2.2-1~precise [222 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main sgml-base all 1.26+nmu1ubuntu1 [8360 B] Get:70 http://ftpmaster.internal/ubuntu/ precise/main xml-core all 0.13 [23.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/main html2text amd64 1.3.2a-15 [104 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main gettext amd64 0.18.1.1-5ubuntu3 [1188 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:76 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main docutils-common all 0.8.1-4ubuntu1 [153 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/main libgmp-dev amd64 2:5.0.2+dfsg-2ubuntu1 [351 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/main libffi-dev amd64 3.0.11~rc1-5 [96.1 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/main libbsd-dev amd64 0.3.0-2 [95.9 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/universe ghc amd64 7.4.1-1ubuntu2 [44.1 MB] Get:82 http://ftpmaster.internal/ubuntu/ precise/universe ghc6 all 7.4.1-1ubuntu2 [5086 B] Get:83 http://ftpmaster.internal/ubuntu/ precise/main libblas3gf amd64 1.2.20110419-2ubuntu1 [287 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1-dev amd64 2.0.1-7.2ubuntu1.1 [216 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/main libjs-jquery all 1.7.1-1ubuntu1 [111 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/main libjs-underscore all 1.1.6-1ubuntu2 [31.3 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise-updates/main libjs-sphinxdoc all 1.1.3+dfsg-2ubuntu2.1 [45.1 kB] Get:88 http://ftpmaster.internal/ubuntu/ precise/main liblapack3gf amd64 3.3.1-1 [4424 kB] Get:89 http://ftpmaster.internal/ubuntu/ precise-updates/main libpython2.7 amd64 2.7.3-0ubuntu3.1 [1188 kB] Get:90 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu4 [165 kB] Get:91 http://ftpmaster.internal/ubuntu/ precise-security/main libssl-dev amd64 1.0.1-4ubuntu5.3 [1525 kB] Get:92 http://ftpmaster.internal/ubuntu/ precise/main python-all amd64 2.7.3-0ubuntu2 [914 B] Get:93 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-dev amd64 2.7.3-0ubuntu3.1 [29.5 MB] Get:94 http://ftpmaster.internal/ubuntu/ precise/main python-dev amd64 2.7.3-0ubuntu2 [1088 B] Get:95 http://ftpmaster.internal/ubuntu/ precise/main python-all-dev amd64 2.7.3-0ubuntu2 [928 B] Get:96 http://ftpmaster.internal/ubuntu/ precise/main python-cairo amd64 1.8.8-1ubuntu3 [50.7 kB] Get:97 http://ftpmaster.internal/ubuntu/ precise/main python-dateutil all 1.5-1 [54.2 kB] Get:98 http://ftpmaster.internal/ubuntu/ precise/main python-roman all 0.8.1-4ubuntu1 [12.6 kB] Get:99 http://ftpmaster.internal/ubuntu/ precise/main python-docutils all 0.8.1-4ubuntu1 [382 kB] Get:100 http://ftpmaster.internal/ubuntu/ precise/main python-gobject-2 amd64 2.28.6-10ubuntu1 [240 kB] Get:101 http://ftpmaster.internal/ubuntu/ precise-updates/main python-gobject all 3.2.2-1~precise [2468 B] Get:102 http://ftpmaster.internal/ubuntu/ precise/main python-markupsafe amd64 0.15-1 [13.6 kB] Get:103 http://ftpmaster.internal/ubuntu/ precise/main python-jinja2 amd64 2.6-1 [158 kB] Get:104 http://ftpmaster.internal/ubuntu/ precise/universe python-matplotlib-data all 1.1.1~rc1+git20120423-0ubuntu1 [1945 kB] Get:105 http://ftpmaster.internal/ubuntu/ precise/universe python-pyparsing all 1.5.2-2ubuntu1 [586 kB] Get:106 http://ftpmaster.internal/ubuntu/ precise/main python-tz all 2011k-0ubuntu5 [44.9 kB] Get:107 http://ftpmaster.internal/ubuntu/ precise/main python-numpy amd64 1:1.6.1-6ubuntu1 [1850 kB] Get:108 http://ftpmaster.internal/ubuntu/ precise/universe python-support all 1.0.14ubuntu2 [26.1 kB] Get:109 http://ftpmaster.internal/ubuntu/ precise/main tcl8.5 amd64 8.5.11-1ubuntu1 [1098 kB] Get:110 http://ftpmaster.internal/ubuntu/ precise/main tk8.5 amd64 8.5.11-1 [1003 kB] Get:111 http://ftpmaster.internal/ubuntu/ precise/universe python-matplotlib amd64 1.1.1~rc1+git20120423-0ubuntu1 [1787 kB] Get:112 http://ftpmaster.internal/ubuntu/ precise/main python-pygments all 1.4+dfsg-2 [353 kB] Get:113 http://ftpmaster.internal/ubuntu/ precise-updates/main sphinx-common all 1.1.3+dfsg-2ubuntu2.1 [412 kB] Get:114 http://ftpmaster.internal/ubuntu/ precise-updates/main python-sphinx all 1.1.3+dfsg-2ubuntu2.1 [312 kB] Get:115 http://ftpmaster.internal/ubuntu/ precise/universe python-cogent amd64 1.5.1-2 [1669 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 113 MB in 4s (26.6 MB/s) Selecting previously unselected package libbsd0. (Reading database ... 12245 files and directories currently installed.) Unpacking libbsd0 (from .../libbsd0_0.3.0-2_amd64.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_amd64.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8.1-1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu2_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu2_amd64.deb) ... Selecting previously unselected package libxext6. Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3build1_amd64.deb) ... 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haddock-html: /usr/share/doc/ghc-doc/html/libraries/old-locale-1.0.0.4 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/directory-1.1.0.2/directory.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/directory-1.1.0.2 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/pretty-1.1.1.0/pretty.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/pretty-1.1.1.0 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/extensible-exceptions-0.1.1.4/extensible-exceptions.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/extensible-exceptions-0.1.1.4 doesn't exist or isn't a directory Setting up ghc6 (7.4.1-1ubuntu2) ... Setting up libblas3gf (1.2.20110419-2ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up libexpat1-dev (2.0.1-7.2ubuntu1.1) ... Setting up libjs-jquery (1.7.1-1ubuntu1) ... Setting up libjs-underscore (1.1.6-1ubuntu2) ... Setting up libjs-sphinxdoc (1.1.3+dfsg-2ubuntu2.1) ... Setting up liblapack3gf (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libpython2.7 (2.7.3-0ubuntu3.1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libssl-dev (1.0.1-4ubuntu5.3) ... Setting up python-all (2.7.3-0ubuntu2) ... Setting up python2.7-dev (2.7.3-0ubuntu3.1) ... Setting up python-dev (2.7.3-0ubuntu2) ... Setting up python-all-dev (2.7.3-0ubuntu2) ... Setting up python-cairo (1.8.8-1ubuntu3) ... Setting up python-dateutil (1.5-1) ... Setting up python-roman (0.8.1-4ubuntu1) ... Setting up python-docutils (0.8.1-4ubuntu1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode. Setting up python-gobject-2 (2.28.6-10ubuntu1) ... Setting up python-gobject (3.2.2-1~precise) ... Setting up python-markupsafe (0.15-1) ... Setting up python-jinja2 (2.6-1) ... Setting up python-matplotlib-data (1.1.1~rc1+git20120423-0ubuntu1) ... Setting up python-pyparsing (1.5.2-2ubuntu1) ... Setting up python-tz (2011k-0ubuntu5) ... Setting up python-numpy (1:1.6.1-6ubuntu1) ... Setting up python-support (1.0.14ubuntu2) ... Setting up tcl8.5 (8.5.11-1ubuntu1) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up python-matplotlib (1.1.1~rc1+git20120423-0ubuntu1) ... Setting up python-pygments (1.4+dfsg-2) ... Setting up sphinx-common (1.1.3+dfsg-2ubuntu2.1) ... Setting up python-sphinx (1.1.3+dfsg-2ubuntu2.1) ... Setting up python-cogent (1.5.1-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Aug 14 16:54:13 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./qiime_1.5.0+repack-2ubuntu4.dsc dpkg-source: info: extracting qiime in qiime-1.5.0+repack dpkg-source: info: unpacking qiime_1.5.0+repack.orig.tar.gz dpkg-source: info: unpacking qiime_1.5.0+repack-2ubuntu4.debian.tar.gz dpkg-source: info: applying check_config_file_in_new_location.patch dpkg-source: info: applying fix_binary_helper_location.patch dpkg-buildpackage: source package qiime dpkg-buildpackage: source version 1.5.0+repack-2ubuntu4 dpkg-source --before-build qiime-1.5.0+repack dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' #Calling "python setup.py clean -a" actually triggers a #rebuild, so don't do it. rm -rf build rm -rf doc/_build ( cd qiime/support_files/denoiser/FlowgramAlignment && make clean ) || true make[2]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' rm *.o rm: cannot remove `*.o': No such file or directory make[2]: *** [clean] Error 1 make[2]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' rm -f qiime/support_files/denoiser/bin/* make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_clean debian/rules build dh build --with python2 dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' ghc --make -O2 FlowgramAli_4frame [1 of 3] Compiling ADPCombinators ( ADPCombinators.lhs, ADPCombinators.o ) [2 of 3] Compiling FlowgramUtils ( FlowgramUtils.lhs, FlowgramUtils.o ) [3 of 3] Compiling Main ( FlowgramAli_4frame.lhs, FlowgramAli_4frame.o ) Linking FlowgramAli_4frame ... make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/qiime copying qiime/sort.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/plot_rank_abundance_graph.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_fastq.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/quality_scores_plot.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/golay.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/parse.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/transform_coordinate_matrices.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/conditional_uncovered_probability.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/quality.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/cluster_quality.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/clean_raxml_parsimony_tree.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/rarefaction.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/beta_metrics.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/beta_diversity.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/nmds.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/filter_otus_by_sample.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/insert_seqs_into_tree.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/check_id_map.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/adjust_seq_orientation.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/pick_subsampled_reference_otus_through_otu_table.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/split_libraries_fastq.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/filter.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/barcode.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/colors.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/longitudinal_otu_category_significance.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/group.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/validate_demultiplexed_fasta.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/summarize_taxa.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_rarefaction_plots.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/convert_fastaqual_to_fastq.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_otu_table.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/simsam.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_otu_heatmap_html.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/plot_taxa_summary.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/shared_phylotypes.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/categorized_dist_scatterplot.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/hamming.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/pick_otus.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/__init__.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/split.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/hierarchical_cluster.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/util.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/otu_category_significance.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/add_qiime_labels.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/trim_sff_primers.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/collate_alpha.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_distance_histograms.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/supervised_learning.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/process_sff.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/test.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/relatedness_library.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_otu_network.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_2d_plots.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/truncate_reverse_primer.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/truncate_fasta_qual_files.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_otu_heatmap.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/filter_alignment.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/plot_semivariogram.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/submit_to_mgrast.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/stats.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/principal_coordinates.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_bootstrapped_tree.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/merge_mapping_files.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/alpha_diversity.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/denoise_wrapper.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/tree_compare.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/biplots.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/workflow.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/exclude_seqs_by_blast.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_per_library_sff.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/split_libraries.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/identify_chimeric_seqs.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/format.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/compare_alpha_diversity.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/distance_matrix_from_mapping.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/align_seqs.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_3d_plots.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/compare_distance_matrices.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_phylogeny.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/assign_taxonomy.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/make_library_id_lists.py -> build/lib.linux-x86_64-2.7/qiime copying qiime/pick_rep_set.py -> build/lib.linux-x86_64-2.7/qiime creating build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/multiple_rarefactions.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/beta_diversity.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/poller.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/assign_taxonomy_blast.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/assign_taxonomy_rdp.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/__init__.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/util.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/align_seqs_pynast.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/pick_otus_blast.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/alpha_diversity.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/pick_otus_uclust_ref.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/blast.py -> build/lib.linux-x86_64-2.7/qiime/parallel copying qiime/parallel/identify_chimeric_seqs.py -> build/lib.linux-x86_64-2.7/qiime/parallel creating build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/distribution_plots.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/usearch.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/raxml_v730.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/mothur.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/uclust.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/rdp_classifier.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/parsinsert.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/tree.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/__init__.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/guppy.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/muscle.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/rtax.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/pplacer.py -> build/lib.linux-x86_64-2.7/qiime/pycogent_backports creating build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/denoise_postprocess.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/make_cluster_jobs.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/preprocess.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/denoise_worker.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/flowgram_clustering.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/cluster_utils.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/__init__.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/utils.py -> build/lib.linux-x86_64-2.7/qiime/denoiser copying qiime/denoiser/flowgram_filter.py -> build/lib.linux-x86_64-2.7/qiime/denoiser creating build/lib.linux-x86_64-2.7/qiime/support_files copying qiime/support_files/qiime_config -> build/lib.linux-x86_64-2.7/qiime/support_files creating build/lib.linux-x86_64-2.7/qiime/support_files/css copying qiime/support_files/css/qiime_style.css -> build/lib.linux-x86_64-2.7/qiime/support_files/css creating build/lib.linux-x86_64-2.7/qiime/support_files/images copying qiime/support_files/images/qiime_header.png -> build/lib.linux-x86_64-2.7/qiime/support_files/images creating build/lib.linux-x86_64-2.7/qiime/support_files/jar copying qiime/support_files/jar/king.jar -> build/lib.linux-x86_64-2.7/qiime/support_files/jar creating build/lib.linux-x86_64-2.7/qiime/support_files/js copying qiime/support_files/js/overlib.js -> build/lib.linux-x86_64-2.7/qiime/support_files/js copying qiime/support_files/js/jquery.tablednd_0_5.js -> build/lib.linux-x86_64-2.7/qiime/support_files/js copying qiime/support_files/js/histograms.js -> build/lib.linux-x86_64-2.7/qiime/support_files/js copying qiime/support_files/js/jquery.js -> build/lib.linux-x86_64-2.7/qiime/support_files/js copying qiime/support_files/js/otu_count_display.js -> build/lib.linux-x86_64-2.7/qiime/support_files/js creating build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/adonis.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/mrpp.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/randomforests_util.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/morans_i.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/loaddata.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/betadisper.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/rda.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/randomforests.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R copying qiime/support_files/R/util.r -> build/lib.linux-x86_64-2.7/qiime/support_files/R creating build/lib.linux-x86_64-2.7/qiime/support_files/denoiser creating build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/FLX_error_profile.dat -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/probabilities.txt -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data creating build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_set_seqs.fna -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_flow_file.dat -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData running build_scripts creating build/scripts-2.7 copying and adjusting scripts/make_distance_comparison_plots.py -> build/scripts-2.7 copying and adjusting scripts/single_rarefaction.py -> build/scripts-2.7 copying and adjusting scripts/plot_rank_abundance_graph.py -> build/scripts-2.7 copying and adjusting scripts/multiple_rarefactions_even_depth.py -> build/scripts-2.7 copying and adjusting scripts/filter_otus_from_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/make_fastq.py -> build/scripts-2.7 copying and adjusting scripts/multiple_rarefactions.py -> build/scripts-2.7 copying and adjusting scripts/quality_scores_plot.py -> build/scripts-2.7 copying and adjusting scripts/parallel_identify_chimeric_seqs.py -> build/scripts-2.7 copying and adjusting scripts/add_taxa.py -> build/scripts-2.7 copying and adjusting scripts/parallel_beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity_through_plots.py -> build/scripts-2.7 copying and adjusting scripts/transform_coordinate_matrices.py -> build/scripts-2.7 copying and adjusting scripts/compare_categories.py -> build/scripts-2.7 copying and adjusting scripts/make_prefs_file.py -> build/scripts-2.7 copying and adjusting scripts/conditional_uncovered_probability.py -> build/scripts-2.7 copying and adjusting scripts/cluster_quality.py -> build/scripts-2.7 copying and adjusting scripts/clean_raxml_parsimony_tree.py -> build/scripts-2.7 copying and adjusting scripts/convert_otu_table_to_unifrac_sample_mapping.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs.py -> build/scripts-2.7 copying and adjusting scripts/compare_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/pick_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/subsample_fasta.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/convert_unifrac_sample_mapping_to_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/nmds.py -> build/scripts-2.7 copying and adjusting scripts/upgma_cluster.py -> build/scripts-2.7 copying and adjusting scripts/filter_otus_by_sample.py -> build/scripts-2.7 copying and adjusting scripts/insert_seqs_into_tree.py -> build/scripts-2.7 copying and adjusting scripts/split_fasta_on_sample_ids.py -> build/scripts-2.7 copying and adjusting scripts/poller.py -> build/scripts-2.7 copying and adjusting scripts/check_id_map.py -> build/scripts-2.7 copying and adjusting scripts/alpha_rarefaction.py -> build/scripts-2.7 copying and adjusting scripts/denoiser_preprocess.py -> build/scripts-2.7 copying and adjusting scripts/adjust_seq_orientation.py -> build/scripts-2.7 copying and adjusting scripts/pick_subsampled_reference_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries_fastq.py -> build/scripts-2.7 copying and adjusting scripts/make_qiime_py_file.py -> build/scripts-2.7 copying and adjusting scripts/fix_arb_fasta.py -> build/scripts-2.7 copying and adjusting scripts/filter_samples_from_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/identify_missing_files.py -> build/scripts-2.7 copying and adjusting scripts/filter_fasta.py -> build/scripts-2.7 copying and adjusting scripts/beta_significance.py -> build/scripts-2.7 copying and adjusting scripts/validate_demultiplexed_fasta.py -> build/scripts-2.7 copying and adjusting scripts/summarize_taxa.py -> build/scripts-2.7 copying and adjusting scripts/make_rarefaction_plots.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs_sc.py -> build/scripts-2.7 copying and adjusting scripts/per_library_stats.py -> build/scripts-2.7 copying and adjusting scripts/convert_fastaqual_to_fastq.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_boxplots.py -> build/scripts-2.7 copying and adjusting scripts/filter_tree.py -> build/scripts-2.7 copying and adjusting scripts/summarize_taxa_through_plots.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/pick_reference_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/simsam.py -> build/scripts-2.7 copying and adjusting scripts/parallel_assign_taxonomy_blast.py -> build/scripts-2.7 copying and adjusting scripts/denoiser.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_heatmap_html.py -> build/scripts-2.7 copying and adjusting scripts/process_qseq.py -> build/scripts-2.7 copying and adjusting scripts/inflate_denoiser_output.py -> build/scripts-2.7 copying and adjusting scripts/plot_taxa_summary.py -> build/scripts-2.7 copying and adjusting scripts/shared_phylotypes.py -> build/scripts-2.7 copying and adjusting scripts/categorized_dist_scatterplot.py -> build/scripts-2.7 copying and adjusting scripts/poller_example.py -> build/scripts-2.7 copying and adjusting scripts/pick_otus.py -> build/scripts-2.7 copying and adjusting scripts/parallel_assign_taxonomy_rdp.py -> build/scripts-2.7 copying and adjusting scripts/blast_wrapper.py -> build/scripts-2.7 copying and adjusting scripts/otu_category_significance.py -> build/scripts-2.7 copying and adjusting scripts/summarize_otu_by_cat.py -> build/scripts-2.7 copying and adjusting scripts/add_qiime_labels.py -> build/scripts-2.7 copying and adjusting scripts/split_otu_table_by_taxonomy.py -> build/scripts-2.7 copying and adjusting scripts/trim_sff_primers.py -> build/scripts-2.7 copying and adjusting scripts/parallel_pick_otus_uclust_ref.py -> build/scripts-2.7 copying and adjusting scripts/collate_alpha.py -> build/scripts-2.7 copying and adjusting scripts/print_qiime_config.py -> build/scripts-2.7 copying and adjusting scripts/ampliconnoise.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_histograms.py -> build/scripts-2.7 copying and adjusting scripts/supervised_learning.py -> build/scripts-2.7 copying and adjusting scripts/process_sff.py -> build/scripts-2.7 copying and adjusting scripts/relatedness.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_network.py -> build/scripts-2.7 copying and adjusting scripts/merge_otu_maps.py -> build/scripts-2.7 copying and adjusting scripts/make_2d_plots.py -> build/scripts-2.7 copying and adjusting scripts/make_qiime_rst_file.py -> build/scripts-2.7 copying and adjusting scripts/jackknifed_beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/truncate_reverse_primer.py -> build/scripts-2.7 copying and adjusting scripts/process_iseq.py -> build/scripts-2.7 copying and adjusting scripts/truncate_fasta_qual_files.py -> build/scripts-2.7 copying and adjusting scripts/make_tep.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_heatmap.py -> build/scripts-2.7 copying and adjusting scripts/trflp_file_to_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/filter_alignment.py -> build/scripts-2.7 copying and adjusting scripts/plot_semivariogram.py -> build/scripts-2.7 copying and adjusting scripts/unweight_fasta.py -> build/scripts-2.7 copying and adjusting scripts/neighbor_joining.py -> build/scripts-2.7 copying and adjusting scripts/submit_to_mgrast.py -> build/scripts-2.7 copying and adjusting scripts/dissimilarity_mtx_stats.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs_torque.py -> build/scripts-2.7 copying and adjusting scripts/parallel_multiple_rarefactions.py -> build/scripts-2.7 copying and adjusting scripts/principal_coordinates.py -> build/scripts-2.7 copying and adjusting scripts/make_bootstrapped_tree.py -> build/scripts-2.7 copying and adjusting scripts/parallel_alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/extract_seqs_by_sample_id.py -> build/scripts-2.7 copying and adjusting scripts/merge_mapping_files.py -> build/scripts-2.7 copying and adjusting scripts/alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/parallel_blast.py -> build/scripts-2.7 copying and adjusting scripts/filter_distance_matrix.py -> build/scripts-2.7 copying and adjusting scripts/denoise_wrapper.py -> build/scripts-2.7 copying and adjusting scripts/parallel_pick_otus_blast.py -> build/scripts-2.7 copying and adjusting scripts/tree_compare.py -> build/scripts-2.7 copying and adjusting scripts/exclude_seqs_by_blast.py -> build/scripts-2.7 copying and adjusting scripts/make_per_library_sff.py -> build/scripts-2.7 copying and adjusting scripts/merge_otu_tables.py -> build/scripts-2.7 copying and adjusting scripts/sort_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/count_seqs.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries.py -> build/scripts-2.7 copying and adjusting scripts/parallel_align_seqs_pynast.py -> build/scripts-2.7 copying and adjusting scripts/identify_chimeric_seqs.py -> build/scripts-2.7 copying and adjusting scripts/compare_alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/denoiser_worker.py -> build/scripts-2.7 copying and adjusting scripts/distance_matrix_from_mapping.py -> build/scripts-2.7 copying and adjusting scripts/align_seqs.py -> build/scripts-2.7 copying and adjusting scripts/make_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/compare_distance_matrices.py -> build/scripts-2.7 copying and adjusting scripts/core_qiime_analyses.py -> build/scripts-2.7 copying and adjusting scripts/make_phylogeny.py -> build/scripts-2.7 copying and adjusting scripts/assign_taxonomy.py -> build/scripts-2.7 copying and adjusting scripts/consensus_tree.py -> build/scripts-2.7 copying and adjusting scripts/make_library_id_lists.py -> build/scripts-2.7 copying and adjusting scripts/split_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/pick_rep_set.py -> build/scripts-2.7 copying scripts/ec2Dispatch -> build/scripts-2.7 copying scripts/ec2Clean -> build/scripts-2.7 changing mode of build/scripts-2.7/make_distance_comparison_plots.py from 664 to 775 changing mode of build/scripts-2.7/single_rarefaction.py from 664 to 775 changing mode of build/scripts-2.7/plot_rank_abundance_graph.py from 664 to 775 changing mode of build/scripts-2.7/multiple_rarefactions_even_depth.py from 664 to 775 changing mode of build/scripts-2.7/filter_otus_from_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/make_fastq.py from 664 to 775 changing mode of build/scripts-2.7/multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.7/quality_scores_plot.py from 664 to 775 changing mode of build/scripts-2.7/parallel_identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.7/add_taxa.py from 664 to 775 changing mode of build/scripts-2.7/parallel_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity_through_plots.py from 664 to 775 changing mode of build/scripts-2.7/transform_coordinate_matrices.py from 664 to 775 changing mode of build/scripts-2.7/compare_categories.py from 664 to 775 changing mode of build/scripts-2.7/make_prefs_file.py from 664 to 775 changing mode of build/scripts-2.7/conditional_uncovered_probability.py from 664 to 775 changing mode of build/scripts-2.7/cluster_quality.py from 664 to 775 changing mode of build/scripts-2.7/clean_raxml_parsimony_tree.py from 664 to 775 changing mode of build/scripts-2.7/convert_otu_table_to_unifrac_sample_mapping.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs.py from 664 to 775 changing mode of build/scripts-2.7/compare_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/pick_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/subsample_fasta.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/convert_unifrac_sample_mapping_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/nmds.py from 664 to 775 changing mode of build/scripts-2.7/upgma_cluster.py from 664 to 775 changing mode of build/scripts-2.7/filter_otus_by_sample.py from 664 to 775 changing mode of build/scripts-2.7/insert_seqs_into_tree.py from 664 to 775 changing mode of build/scripts-2.7/split_fasta_on_sample_ids.py from 664 to 775 changing mode of build/scripts-2.7/poller.py from 664 to 775 changing mode of build/scripts-2.7/check_id_map.py from 664 to 775 changing mode of build/scripts-2.7/alpha_rarefaction.py from 664 to 775 changing mode of build/scripts-2.7/denoiser_preprocess.py from 664 to 775 changing mode of build/scripts-2.7/adjust_seq_orientation.py from 664 to 775 changing mode of build/scripts-2.7/pick_subsampled_reference_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries_fastq.py from 664 to 775 changing mode of build/scripts-2.7/make_qiime_py_file.py from 664 to 775 changing mode of build/scripts-2.7/fix_arb_fasta.py from 664 to 775 changing mode of build/scripts-2.7/filter_samples_from_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/identify_missing_files.py from 664 to 775 changing mode of build/scripts-2.7/filter_fasta.py from 664 to 775 changing mode of build/scripts-2.7/beta_significance.py from 664 to 775 changing mode of build/scripts-2.7/validate_demultiplexed_fasta.py from 664 to 775 changing mode of build/scripts-2.7/summarize_taxa.py from 664 to 775 changing mode of build/scripts-2.7/make_rarefaction_plots.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs_sc.py from 664 to 775 changing mode of build/scripts-2.7/per_library_stats.py from 664 to 775 changing mode of build/scripts-2.7/convert_fastaqual_to_fastq.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_boxplots.py from 664 to 775 changing mode of build/scripts-2.7/filter_tree.py from 664 to 775 changing mode of build/scripts-2.7/summarize_taxa_through_plots.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/pick_reference_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/simsam.py from 664 to 775 changing mode of build/scripts-2.7/parallel_assign_taxonomy_blast.py from 664 to 775 changing mode of build/scripts-2.7/denoiser.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_heatmap_html.py from 664 to 775 changing mode of build/scripts-2.7/process_qseq.py from 664 to 775 changing mode of build/scripts-2.7/inflate_denoiser_output.py from 664 to 775 changing mode of build/scripts-2.7/plot_taxa_summary.py from 664 to 775 changing mode of build/scripts-2.7/shared_phylotypes.py from 664 to 775 changing mode of build/scripts-2.7/categorized_dist_scatterplot.py from 664 to 775 changing mode of build/scripts-2.7/poller_example.py from 664 to 775 changing mode of build/scripts-2.7/pick_otus.py from 664 to 775 changing mode of build/scripts-2.7/parallel_assign_taxonomy_rdp.py from 664 to 775 changing mode of build/scripts-2.7/blast_wrapper.py from 664 to 775 changing mode of build/scripts-2.7/otu_category_significance.py from 664 to 775 changing mode of build/scripts-2.7/summarize_otu_by_cat.py from 664 to 775 changing mode of build/scripts-2.7/add_qiime_labels.py from 664 to 775 changing mode of build/scripts-2.7/split_otu_table_by_taxonomy.py from 664 to 775 changing mode of build/scripts-2.7/trim_sff_primers.py from 664 to 775 changing mode of build/scripts-2.7/parallel_pick_otus_uclust_ref.py from 664 to 775 changing mode of build/scripts-2.7/collate_alpha.py from 664 to 775 changing mode of build/scripts-2.7/print_qiime_config.py from 664 to 775 changing mode of build/scripts-2.7/ampliconnoise.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_histograms.py from 664 to 775 changing mode of build/scripts-2.7/supervised_learning.py from 664 to 775 changing mode of build/scripts-2.7/process_sff.py from 664 to 775 changing mode of build/scripts-2.7/relatedness.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_network.py from 664 to 775 changing mode of build/scripts-2.7/merge_otu_maps.py from 664 to 775 changing mode of build/scripts-2.7/make_2d_plots.py from 664 to 775 changing mode of build/scripts-2.7/make_qiime_rst_file.py from 664 to 775 changing mode of build/scripts-2.7/jackknifed_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/truncate_reverse_primer.py from 664 to 775 changing mode of build/scripts-2.7/process_iseq.py from 664 to 775 changing mode of build/scripts-2.7/truncate_fasta_qual_files.py from 664 to 775 changing mode of build/scripts-2.7/make_tep.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_heatmap.py from 664 to 775 changing mode of build/scripts-2.7/trflp_file_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/filter_alignment.py from 664 to 775 changing mode of build/scripts-2.7/plot_semivariogram.py from 664 to 775 changing mode of build/scripts-2.7/unweight_fasta.py from 664 to 775 changing mode of build/scripts-2.7/neighbor_joining.py from 664 to 775 changing mode of build/scripts-2.7/submit_to_mgrast.py from 664 to 775 changing mode of build/scripts-2.7/dissimilarity_mtx_stats.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs_torque.py from 664 to 775 changing mode of build/scripts-2.7/parallel_multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.7/principal_coordinates.py from 664 to 775 changing mode of build/scripts-2.7/make_bootstrapped_tree.py from 664 to 775 changing mode of build/scripts-2.7/parallel_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/extract_seqs_by_sample_id.py from 664 to 775 changing mode of build/scripts-2.7/merge_mapping_files.py from 664 to 775 changing mode of build/scripts-2.7/alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/parallel_blast.py from 664 to 775 changing mode of build/scripts-2.7/filter_distance_matrix.py from 664 to 775 changing mode of build/scripts-2.7/denoise_wrapper.py from 664 to 775 changing mode of build/scripts-2.7/parallel_pick_otus_blast.py from 664 to 775 changing mode of build/scripts-2.7/tree_compare.py from 664 to 775 changing mode of build/scripts-2.7/exclude_seqs_by_blast.py from 664 to 775 changing mode of build/scripts-2.7/make_per_library_sff.py from 664 to 775 changing mode of build/scripts-2.7/merge_otu_tables.py from 664 to 775 changing mode of build/scripts-2.7/sort_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/count_seqs.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries.py from 664 to 775 changing mode of build/scripts-2.7/parallel_align_seqs_pynast.py from 664 to 775 changing mode of build/scripts-2.7/identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.7/compare_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/denoiser_worker.py from 664 to 775 changing mode of build/scripts-2.7/distance_matrix_from_mapping.py from 664 to 775 changing mode of build/scripts-2.7/align_seqs.py from 664 to 775 changing mode of build/scripts-2.7/make_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/compare_distance_matrices.py from 664 to 775 changing mode of build/scripts-2.7/core_qiime_analyses.py from 664 to 775 changing mode of build/scripts-2.7/make_phylogeny.py from 664 to 775 changing mode of build/scripts-2.7/assign_taxonomy.py from 664 to 775 changing mode of build/scripts-2.7/consensus_tree.py from 664 to 775 changing mode of build/scripts-2.7/make_library_id_lists.py from 664 to 775 changing mode of build/scripts-2.7/split_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/pick_rep_set.py from 664 to 775 make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/doc' sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.1.3 loading pickled environment... not yet created building [html]: targets for 173 source files that are out of date updating environment: 173 added, 0 changed, 0 removed reading sources... [ 0%] developer/coding_guidelines reading sources... [ 1%] developer/index reading sources... [ 1%] developer/reporting_and_fixing_bugs reading sources... [ 2%] documentation/biom_format reading sources... [ 2%] documentation/file_formats reading sources... [ 3%] documentation/index reading sources... [ 4%] documentation/script_index reading sources... [ 4%] documentation/table_objects reading sources... [ 5%] index reading sources... [ 5%] install/index reading sources... [ 6%] install/install reading sources... [ 6%] install/qiime_config reading sources... [ 7%] install/ubuntu_install reading sources... [ 8%] install/upgrade reading sources... [ 8%] install/virtual_box reading sources... [ 9%] install/vm_ec2 reading sources... [ 9%] scripts/add_qiime_labels reading sources... 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[100%] tutorials/working_with_aws /build/buildd/qiime-1.5.0+repack/doc/install/ubuntu_install.rst:22: WARNING: Literal block ends without a blank line; unexpected unindent. /build/buildd/qiime-1.5.0+repack/doc/tutorials/running_supervised_learning.rst:5: WARNING: Duplicate explicit target name: "link". /build/buildd/qiime-1.5.0+repack/doc/tutorials/usearch_quality_filter.rst:5: WARNING: Duplicate explicit target name: "otupipe". looking for now-outdated files... none found pickling environment... done checking consistency... /build/buildd/qiime-1.5.0+repack/doc/developer/index.rst:: WARNING: document isn't included in any toctree /build/buildd/qiime-1.5.0+repack/doc/documentation/index.rst:: WARNING: document isn't included in any toctree /build/buildd/qiime-1.5.0+repack/doc/install/index.rst:: WARNING: document isn't included in any toctree /build/buildd/qiime-1.5.0+repack/doc/scripts/index.rst:: WARNING: document isn't included in any toctree /build/buildd/qiime-1.5.0+repack/doc/tutorials/index.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... 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[ 27%] tutorials/../images/time_comparisons2.png copying images... [ 30%] tutorials/../images/biplot.png copying images... [ 33%] tutorials/../images/cyberduck_opened_connection.png copying images... [ 36%] tutorials/../images/cyberduck_view_file.png copying images... [ 39%] tutorials/../images/example_primer_construct.png copying images... [ 42%] tutorials/../images/distance_boxplots1.png copying images... [ 45%] tutorials/../images/cyberduck_drag_and_drop_output_file.png copying images... [ 48%] tutorials/../images/network.png copying images... [ 51%] tutorials/../images/configure_ebs_volume_creation.png copying images... [ 54%] tutorials/../images/time_comparisons3.png copying images... [ 57%] tutorials/../images/time_comparisons1.png copying images... [ 60%] tutorials/../images/pcoa2.png copying images... [ 63%] tutorials/../images/procrustes_tutorial_figure1.png copying images... [ 66%] tutorials/../images/create_an_ebs_volume.png copying images... [ 69%] tutorials/../images/heatmap.png copying images... [ 72%] tutorials/../images/rarecurve.png copying images... [ 75%] tutorials/../images/configure_ebs_volume_attachment.png copying images... [ 78%] tutorials/../images/stop_instance.png copying images... [ 81%] tutorials/../images/mantel_correlogram.png copying images... [ 84%] tutorials/../images/fisheyeheatmap.png copying images... [ 87%] tutorials/../images/cyberduck_drag_and_drop_input_file.png copying images... [ 90%] tutorials/../images/cyberduck_create_output_file.png copying images... [ 93%] tutorials/../images/hist.png copying images... [ 96%] tutorials/../images/boottree.png copying images... [100%] tutorials/../images/UPGMAbytreatment.png copying static files... done dumping search index... done dumping object inventory... done build succeeded, 8 warnings. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/doc' Local documentation built with Sphinx. Open to following path with a web browser: /build/buildd/qiime-1.5.0+repack/doc/_build/html/index.html dh_auto_test /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running install running build running build_py running build_scripts running install_lib creating /build/buildd/qiime-1.5.0+repack/debian/tmp creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7 creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/sort.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/plot_rank_abundance_graph.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/quality_scores_plot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/golay.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/parse.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/transform_coordinate_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/conditional_uncovered_probability.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/quality.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/cluster_quality.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/clean_raxml_parsimony_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/rarefaction.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData/test_set_seqs.fna -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData/test_flow_file.dat -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data/FLX_error_profile.dat -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-x86_64-2.7/qiime/support_files/denoiser/Data/probabilities.txt -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/adonis.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/mrpp.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/randomforests_util.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/morans_i.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/loaddata.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/betadisper.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/rda.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/randomforests.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/R/util.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-x86_64-2.7/qiime/support_files/qiime_config -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/images copying build/lib.linux-x86_64-2.7/qiime/support_files/images/qiime_header.png -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/images creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-x86_64-2.7/qiime/support_files/js/overlib.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-x86_64-2.7/qiime/support_files/js/jquery.tablednd_0_5.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-x86_64-2.7/qiime/support_files/js/histograms.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-x86_64-2.7/qiime/support_files/js/jquery.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-x86_64-2.7/qiime/support_files/js/otu_count_display.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/css copying build/lib.linux-x86_64-2.7/qiime/support_files/css/qiime_style.css -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/css creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/jar copying build/lib.linux-x86_64-2.7/qiime/support_files/jar/king.jar -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/jar creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/denoise_postprocess.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/make_cluster_jobs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/preprocess.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/denoise_worker.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/flowgram_clustering.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/cluster_utils.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/utils.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-x86_64-2.7/qiime/denoiser/flowgram_filter.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/distribution_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/usearch.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/raxml_v730.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/mothur.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/uclust.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/rdp_classifier.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/parsinsert.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/guppy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/muscle.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/rtax.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/pycogent_backports/pplacer.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-x86_64-2.7/qiime/beta_metrics.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/nmds.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/filter_otus_by_sample.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/insert_seqs_into_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/check_id_map.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/adjust_seq_orientation.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/pick_subsampled_reference_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/split_libraries_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/filter.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/barcode.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/colors.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/longitudinal_otu_category_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/group.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/validate_demultiplexed_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/summarize_taxa.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_rarefaction_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/convert_fastaqual_to_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/simsam.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_otu_heatmap_html.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/plot_taxa_summary.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/shared_phylotypes.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/categorized_dist_scatterplot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/hamming.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/pick_otus.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/split.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/hierarchical_cluster.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/util.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/otu_category_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/add_qiime_labels.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/trim_sff_primers.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/collate_alpha.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_distance_histograms.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/supervised_learning.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/process_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/test.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/relatedness_library.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_otu_network.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_2d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/truncate_reverse_primer.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/truncate_fasta_qual_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_otu_heatmap.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/filter_alignment.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/plot_semivariogram.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/submit_to_mgrast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/stats.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/principal_coordinates.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_bootstrapped_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/merge_mapping_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/denoise_wrapper.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/tree_compare.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/biplots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/workflow.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/exclude_seqs_by_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_per_library_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/split_libraries.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/format.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/compare_alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/distance_matrix_from_mapping.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/align_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_3d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/multiple_rarefactions.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/poller.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/assign_taxonomy_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/assign_taxonomy_rdp.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/util.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/align_seqs_pynast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/pick_otus_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/pick_otus_uclust_ref.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/parallel/identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-x86_64-2.7/qiime/compare_distance_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_phylogeny.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/assign_taxonomy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/make_library_id_lists.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-x86_64-2.7/qiime/pick_rep_set.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime running install_scripts creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_comparison_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/single_rarefaction.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/plot_rank_abundance_graph.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/multiple_rarefactions_even_depth.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_otus_from_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/multiple_rarefactions.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/quality_scores_plot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/add_taxa.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity_through_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/transform_coordinate_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_categories.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_prefs_file.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/conditional_uncovered_probability.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/cluster_quality.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/clean_raxml_parsimony_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/convert_otu_table_to_unifrac_sample_mapping.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_3d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/subsample_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/convert_unifrac_sample_mapping_to_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/nmds.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/upgma_cluster.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_otus_by_sample.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/insert_seqs_into_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_fasta_on_sample_ids.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/ec2Dispatch -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/poller.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/check_id_map.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/alpha_rarefaction.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoiser_preprocess.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/adjust_seq_orientation.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_subsampled_reference_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_qiime_py_file.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/fix_arb_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_samples_from_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/identify_missing_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/beta_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/ec2Clean -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/validate_demultiplexed_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/summarize_taxa.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_rarefaction_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs_sc.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/per_library_stats.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/convert_fastaqual_to_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_boxplots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/summarize_taxa_through_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_reference_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/simsam.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_assign_taxonomy_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoiser.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_heatmap_html.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/process_qseq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/inflate_denoiser_output.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/plot_taxa_summary.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/shared_phylotypes.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/categorized_dist_scatterplot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/poller_example.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_otus.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_assign_taxonomy_rdp.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/blast_wrapper.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/otu_category_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/summarize_otu_by_cat.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/add_qiime_labels.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_otu_table_by_taxonomy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/trim_sff_primers.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_pick_otus_uclust_ref.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/collate_alpha.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/print_qiime_config.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/ampliconnoise.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_histograms.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/supervised_learning.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/process_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/relatedness.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_network.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/merge_otu_maps.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_2d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_qiime_rst_file.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/jackknifed_beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/truncate_reverse_primer.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/process_iseq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/truncate_fasta_qual_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_tep.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_heatmap.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/trflp_file_to_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_alignment.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/plot_semivariogram.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/unweight_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/neighbor_joining.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/submit_to_mgrast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/dissimilarity_mtx_stats.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs_torque.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_multiple_rarefactions.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/principal_coordinates.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_bootstrapped_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/extract_seqs_by_sample_id.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/merge_mapping_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_distance_matrix.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoise_wrapper.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_pick_otus_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/tree_compare.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/exclude_seqs_by_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_per_library_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/merge_otu_tables.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/sort_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/count_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_align_seqs_pynast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoiser_worker.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/distance_matrix_from_mapping.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/align_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_3d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_distance_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/core_qiime_analyses.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_phylogeny.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/assign_taxonomy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/consensus_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_library_id_lists.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_rep_set.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_distance_comparison_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/single_rarefaction.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/plot_rank_abundance_graph.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/multiple_rarefactions_even_depth.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_otus_from_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_fastq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/multiple_rarefactions.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/quality_scores_plot.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_identify_chimeric_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/add_taxa.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_beta_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/beta_diversity_through_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/transform_coordinate_matrices.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_categories.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_prefs_file.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/conditional_uncovered_probability.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/cluster_quality.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/clean_raxml_parsimony_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/convert_otu_table_to_unifrac_sample_mapping.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/start_parallel_jobs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_3d_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_otus_through_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/subsample_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/beta_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/convert_unifrac_sample_mapping_to_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/nmds.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/upgma_cluster.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_otus_by_sample.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/insert_seqs_into_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_fasta_on_sample_ids.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/ec2Dispatch to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/poller.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/check_id_map.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/alpha_rarefaction.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoiser_preprocess.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/adjust_seq_orientation.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_subsampled_reference_otus_through_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_libraries_fastq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_qiime_py_file.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/fix_arb_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_samples_from_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/identify_missing_files.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/beta_significance.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/ec2Clean to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/validate_demultiplexed_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/summarize_taxa.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_rarefaction_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/start_parallel_jobs_sc.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/per_library_stats.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/convert_fastaqual_to_fastq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_distance_boxplots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/summarize_taxa_through_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_reference_otus_through_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/simsam.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_assign_taxonomy_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoiser.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_heatmap_html.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/process_qseq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/inflate_denoiser_output.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/plot_taxa_summary.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/shared_phylotypes.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/categorized_dist_scatterplot.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/poller_example.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_otus.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_assign_taxonomy_rdp.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/blast_wrapper.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/otu_category_significance.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/summarize_otu_by_cat.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/add_qiime_labels.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_otu_table_by_taxonomy.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/trim_sff_primers.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_pick_otus_uclust_ref.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/collate_alpha.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/print_qiime_config.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/ampliconnoise.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_distance_histograms.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/supervised_learning.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/process_sff.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/relatedness.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_network.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/merge_otu_maps.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_2d_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_qiime_rst_file.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/jackknifed_beta_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/truncate_reverse_primer.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/process_iseq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/truncate_fasta_qual_files.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_tep.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_heatmap.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/trflp_file_to_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_alignment.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/plot_semivariogram.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/unweight_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/neighbor_joining.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/submit_to_mgrast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/dissimilarity_mtx_stats.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/start_parallel_jobs_torque.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_multiple_rarefactions.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/principal_coordinates.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_bootstrapped_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_alpha_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/extract_seqs_by_sample_id.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/merge_mapping_files.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/alpha_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_distance_matrix.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoise_wrapper.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_pick_otus_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/tree_compare.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/exclude_seqs_by_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_per_library_sff.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/merge_otu_tables.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/sort_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/count_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_libraries.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_align_seqs_pynast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/identify_chimeric_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_alpha_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoiser_worker.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/distance_matrix_from_mapping.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/align_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_3d_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_distance_matrices.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/core_qiime_analyses.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_phylogeny.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/assign_taxonomy.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/consensus_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_library_id_lists.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_rep_set.py to 775 running install_data creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files/denoiser creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files/denoiser/bin copying qiime/support_files/denoiser/bin/FlowgramAli_4frame -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files/denoiser/bin/ running install_egg_info Writing /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/QIIME-1.5.0.egg-info make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.1.3 loading pickled environment... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/doc' Local documentation built with Sphinx. Open to following path with a web browser: /build/buildd/qiime-1.5.0+repack/doc/_build/html/index.html debian/rules override_dh_install make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' dh_install chmod a+x debian/qiime/usr/lib/qiime/bin/uclust || true chmod -R a+rX debian/qiime/usr/lib/qiime/shell || true chmod a-x debian/qiime/usr/share/qiime/support_files/R/* || true chmod a-x debian/qiime/usr/share/qiime/support_files/js/* || true #Fix lintian warning for jquery rm debian/qiime/usr/share/qiime/support_files/js/jquery.js && \ ln -s /usr/share/javascript/jquery/jquery.js debian/qiime/usr/share/qiime/support_files/js #Make some symlinks as Qiime assumes a single dir structure for path in denoiser/Data css images R js ; do \ dh_link -pqiime /usr/share/qiime/support_files/"$path" /usr/lib/qiime/support_files/"$path" ;\ done make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' dh_installchangelogs ChangeLog make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_python2 -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' dh_compress \ --exclude=.js \ --exclude=.sff \ --exclude=.qual \ --exclude=.fna \ --exclude=.fna.txt make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: warning: 'debian/qiime/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `qiime' in `../qiime_1.5.0+repack-2ubuntu4_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../qiime_1.5.0+repack-2ubuntu4_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build qiime-1.5.0+repack dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120814-1905 chroot-autobuild/build/buildd/qiime_1.5.0+repack-2ubuntu4_amd64.deb: new debian package, version 2.0. size 1058436 bytes: control archive= 9923 bytes. 24 bytes, 1 lines conffiles 2500 bytes, 49 lines control 21913 bytes, 280 lines md5sums 243 bytes, 13 lines * postinst #!/bin/sh 247 bytes, 14 lines * prerm #!/bin/sh Package: qiime Version: 1.5.0+repack-2ubuntu4 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 4340 Depends: libc6 (>= 2.15), libffi6 (>= 3.0.4), libgmp10, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-pynast (>= 1.1) | pynast (>= 1.1), python-cogent (>= 1.5.1), king, python-biom-format Recommends: blast2 | blast+-legacy, cd-hit, rdp-classifier, chimeraslayer, muscle, infernal, fasttree, ampliconnoise, python-matplotlib, python-numpy, libjs-jquery Suggests: t-coffee, cytoscape Conflicts: denoiser Replaces: denoiser Provides: denoiser Section: science Priority: extra Homepage: http://www.qiime.org/ Description: Quantitative Insights Into Microbial Ecology QIIME (canonically pronounced ‘Chime’) is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field. A standard QIIME analysis begins with sequence data from one or more sequencing platforms, including * Sanger, * Roche/454, and * Illumina GAIIx. With all the underlying tools installed, of which not all are yet available in Debian (or any other Linux distribution), QIIME can perform * library de-multiplexing and quality filtering; * denoising with PyroNoise; * OTU and representative set picking with uclust, cdhit, mothur, BLAST, or other tools; * taxonomy assignment with BLAST or the RDP classifier; * sequence alignment with PyNAST, muscle, infernal, or other tools; * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools; * alpha diversity and rarefaction, including visualization of results, using over 20 metrics including Phylogenetic Diversity, chao1, and observed species; * beta diversity and rarefaction, including visualization of results, using over 25 metrics including weighted and unweighted UniFrac, Euclidean distance, and Bray-Curtis; * summarization and visualization of taxonomic composition of samples using pie charts and histograms and many other features. . QIIME includes parallelization capabilities for many of the computationally intensive steps. By default, these are configured to utilize a mutli-core environment, and are easily configured to run in a cluster environment. QIIME is built in Python using the open-source PyCogent toolkit. It makes extensive use of unit tests, and is highly modular to facilitate custom analyses. 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./usr/lib/qiime/bin/make_phylogeny.py -rwxr-xr-x root/root 14363 2012-08-14 19:05 ./usr/lib/qiime/bin/assign_taxonomy.py -rwxr-xr-x root/root 3612 2012-08-14 19:05 ./usr/lib/qiime/bin/consensus_tree.py -rwxr-xr-x root/root 3765 2012-08-14 19:05 ./usr/lib/qiime/bin/make_library_id_lists.py -rwxr-xr-x root/root 3420 2012-08-14 19:05 ./usr/lib/qiime/bin/split_otu_table.py -rwxr-xr-x root/root 6261 2012-08-14 19:05 ./usr/lib/qiime/bin/pick_rep_set.py drwxr-xr-x root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/ drwxr-xr-x root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/denoiser/ drwxr-xr-x root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/denoiser/bin/ -rwxr-xr-x root/root 1175808 2012-08-14 19:05 ./usr/lib/qiime/support_files/denoiser/bin/FlowgramAli_4frame drwxr-xr-x root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/jar/ drwxr-xr-x root/root 0 2012-08-14 19:05 ./usr/lib/qiime/shell/ -rw-r--r-- root/root 298 2012-08-10 13:40 ./usr/lib/qiime/shell/.bashrc -rw-r--r-- root/root 256 2012-08-10 13:40 ./usr/lib/qiime/shell/.zshrc -rw-r--r-- root/root 1148 2012-08-14 14:03 ./usr/lib/qiime/shell/qiime_environment -rw-r--r-- root/root 1706 2012-08-10 13:40 ./usr/lib/qiime/shell/qiime_help lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/bin/denoiser -> qiime lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/share/qiime/support_files/js/jquery.js -> ../../../javascript/jquery/jquery.js lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/sort.py -> ../../../../share/pyshared/qiime/sort.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/plot_rank_abundance_graph.py -> ../../../../share/pyshared/qiime/plot_rank_abundance_graph.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_fastq.py -> ../../../../share/pyshared/qiime/make_fastq.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/quality_scores_plot.py -> ../../../../share/pyshared/qiime/quality_scores_plot.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/golay.py -> ../../../../share/pyshared/qiime/golay.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parse.py -> ../../../../share/pyshared/qiime/parse.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/transform_coordinate_matrices.py -> ../../../../share/pyshared/qiime/transform_coordinate_matrices.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/conditional_uncovered_probability.py -> ../../../../share/pyshared/qiime/conditional_uncovered_probability.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/quality.py -> ../../../../share/pyshared/qiime/quality.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/cluster_quality.py -> ../../../../share/pyshared/qiime/cluster_quality.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/clean_raxml_parsimony_tree.py -> ../../../../share/pyshared/qiime/clean_raxml_parsimony_tree.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/rarefaction.py -> ../../../../share/pyshared/qiime/rarefaction.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/denoise_postprocess.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_postprocess.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/make_cluster_jobs.py -> ../../../../../share/pyshared/qiime/denoiser/make_cluster_jobs.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/preprocess.py -> ../../../../../share/pyshared/qiime/denoiser/preprocess.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/denoise_worker.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_worker.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/flowgram_clustering.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_clustering.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/cluster_utils.py -> ../../../../../share/pyshared/qiime/denoiser/cluster_utils.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/__init__.py -> ../../../../../share/pyshared/qiime/denoiser/__init__.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/utils.py -> ../../../../../share/pyshared/qiime/denoiser/utils.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoiser/flowgram_filter.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_filter.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/distribution_plots.py -> ../../../../../share/pyshared/qiime/pycogent_backports/distribution_plots.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/usearch.py -> ../../../../../share/pyshared/qiime/pycogent_backports/usearch.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/raxml_v730.py -> ../../../../../share/pyshared/qiime/pycogent_backports/raxml_v730.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/mothur.py -> ../../../../../share/pyshared/qiime/pycogent_backports/mothur.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/uclust.py -> ../../../../../share/pyshared/qiime/pycogent_backports/uclust.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/rdp_classifier.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rdp_classifier.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/parsinsert.py -> ../../../../../share/pyshared/qiime/pycogent_backports/parsinsert.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/tree.py -> ../../../../../share/pyshared/qiime/pycogent_backports/tree.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/__init__.py -> ../../../../../share/pyshared/qiime/pycogent_backports/__init__.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/guppy.py -> ../../../../../share/pyshared/qiime/pycogent_backports/guppy.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/muscle.py -> ../../../../../share/pyshared/qiime/pycogent_backports/muscle.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/rtax.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rtax.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/pplacer.py -> ../../../../../share/pyshared/qiime/pycogent_backports/pplacer.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/beta_metrics.py -> ../../../../share/pyshared/qiime/beta_metrics.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/beta_diversity.py -> ../../../../share/pyshared/qiime/beta_diversity.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/nmds.py -> ../../../../share/pyshared/qiime/nmds.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/filter_otus_by_sample.py -> ../../../../share/pyshared/qiime/filter_otus_by_sample.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/insert_seqs_into_tree.py -> ../../../../share/pyshared/qiime/insert_seqs_into_tree.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/check_id_map.py -> ../../../../share/pyshared/qiime/check_id_map.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/adjust_seq_orientation.py -> ../../../../share/pyshared/qiime/adjust_seq_orientation.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pick_subsampled_reference_otus_through_otu_table.py -> ../../../../share/pyshared/qiime/pick_subsampled_reference_otus_through_otu_table.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/split_libraries_fastq.py -> ../../../../share/pyshared/qiime/split_libraries_fastq.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/filter.py -> ../../../../share/pyshared/qiime/filter.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/barcode.py -> ../../../../share/pyshared/qiime/barcode.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/colors.py -> ../../../../share/pyshared/qiime/colors.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/longitudinal_otu_category_significance.py -> ../../../../share/pyshared/qiime/longitudinal_otu_category_significance.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/group.py -> ../../../../share/pyshared/qiime/group.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/validate_demultiplexed_fasta.py -> ../../../../share/pyshared/qiime/validate_demultiplexed_fasta.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/summarize_taxa.py -> ../../../../share/pyshared/qiime/summarize_taxa.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_rarefaction_plots.py -> ../../../../share/pyshared/qiime/make_rarefaction_plots.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/convert_fastaqual_to_fastq.py -> ../../../../share/pyshared/qiime/convert_fastaqual_to_fastq.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_otu_table.py -> ../../../../share/pyshared/qiime/make_otu_table.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/simsam.py -> ../../../../share/pyshared/qiime/simsam.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_otu_heatmap_html.py -> ../../../../share/pyshared/qiime/make_otu_heatmap_html.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/plot_taxa_summary.py -> ../../../../share/pyshared/qiime/plot_taxa_summary.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/shared_phylotypes.py -> ../../../../share/pyshared/qiime/shared_phylotypes.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/categorized_dist_scatterplot.py -> ../../../../share/pyshared/qiime/categorized_dist_scatterplot.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/hamming.py -> ../../../../share/pyshared/qiime/hamming.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pick_otus.py -> ../../../../share/pyshared/qiime/pick_otus.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/__init__.py -> ../../../../share/pyshared/qiime/__init__.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/split.py -> ../../../../share/pyshared/qiime/split.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/hierarchical_cluster.py -> ../../../../share/pyshared/qiime/hierarchical_cluster.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/util.py -> ../../../../share/pyshared/qiime/util.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/otu_category_significance.py -> ../../../../share/pyshared/qiime/otu_category_significance.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/add_qiime_labels.py -> ../../../../share/pyshared/qiime/add_qiime_labels.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/trim_sff_primers.py -> ../../../../share/pyshared/qiime/trim_sff_primers.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/collate_alpha.py -> ../../../../share/pyshared/qiime/collate_alpha.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_distance_histograms.py -> ../../../../share/pyshared/qiime/make_distance_histograms.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/supervised_learning.py -> ../../../../share/pyshared/qiime/supervised_learning.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/process_sff.py -> ../../../../share/pyshared/qiime/process_sff.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/test.py -> ../../../../share/pyshared/qiime/test.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/relatedness_library.py -> ../../../../share/pyshared/qiime/relatedness_library.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_otu_network.py -> ../../../../share/pyshared/qiime/make_otu_network.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_2d_plots.py -> ../../../../share/pyshared/qiime/make_2d_plots.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/truncate_reverse_primer.py -> ../../../../share/pyshared/qiime/truncate_reverse_primer.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/truncate_fasta_qual_files.py -> ../../../../share/pyshared/qiime/truncate_fasta_qual_files.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_otu_heatmap.py -> ../../../../share/pyshared/qiime/make_otu_heatmap.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/filter_alignment.py -> ../../../../share/pyshared/qiime/filter_alignment.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/plot_semivariogram.py -> ../../../../share/pyshared/qiime/plot_semivariogram.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/submit_to_mgrast.py -> ../../../../share/pyshared/qiime/submit_to_mgrast.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/stats.py -> ../../../../share/pyshared/qiime/stats.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/principal_coordinates.py -> ../../../../share/pyshared/qiime/principal_coordinates.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_bootstrapped_tree.py -> ../../../../share/pyshared/qiime/make_bootstrapped_tree.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/merge_mapping_files.py -> ../../../../share/pyshared/qiime/merge_mapping_files.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/alpha_diversity.py -> ../../../../share/pyshared/qiime/alpha_diversity.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/denoise_wrapper.py -> ../../../../share/pyshared/qiime/denoise_wrapper.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/tree_compare.py -> ../../../../share/pyshared/qiime/tree_compare.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/biplots.py -> ../../../../share/pyshared/qiime/biplots.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/workflow.py -> ../../../../share/pyshared/qiime/workflow.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/exclude_seqs_by_blast.py -> ../../../../share/pyshared/qiime/exclude_seqs_by_blast.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_per_library_sff.py -> ../../../../share/pyshared/qiime/make_per_library_sff.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/split_libraries.py -> ../../../../share/pyshared/qiime/split_libraries.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/identify_chimeric_seqs.py -> ../../../../share/pyshared/qiime/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/format.py -> ../../../../share/pyshared/qiime/format.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/compare_alpha_diversity.py -> ../../../../share/pyshared/qiime/compare_alpha_diversity.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/distance_matrix_from_mapping.py -> ../../../../share/pyshared/qiime/distance_matrix_from_mapping.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/align_seqs.py -> ../../../../share/pyshared/qiime/align_seqs.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_3d_plots.py -> ../../../../share/pyshared/qiime/make_3d_plots.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/multiple_rarefactions.py -> ../../../../../share/pyshared/qiime/parallel/multiple_rarefactions.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/beta_diversity.py -> ../../../../../share/pyshared/qiime/parallel/beta_diversity.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/poller.py -> ../../../../../share/pyshared/qiime/parallel/poller.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/assign_taxonomy_blast.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_blast.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/assign_taxonomy_rdp.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_rdp.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/__init__.py -> ../../../../../share/pyshared/qiime/parallel/__init__.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/util.py -> ../../../../../share/pyshared/qiime/parallel/util.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/align_seqs_pynast.py -> ../../../../../share/pyshared/qiime/parallel/align_seqs_pynast.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/pick_otus_blast.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_blast.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/alpha_diversity.py -> ../../../../../share/pyshared/qiime/parallel/alpha_diversity.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/pick_otus_uclust_ref.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_uclust_ref.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/blast.py -> ../../../../../share/pyshared/qiime/parallel/blast.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/parallel/identify_chimeric_seqs.py -> ../../../../../share/pyshared/qiime/parallel/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/compare_distance_matrices.py -> ../../../../share/pyshared/qiime/compare_distance_matrices.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_phylogeny.py -> ../../../../share/pyshared/qiime/make_phylogeny.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/assign_taxonomy.py -> ../../../../share/pyshared/qiime/assign_taxonomy.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/make_library_id_lists.py -> ../../../../share/pyshared/qiime/make_library_id_lists.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/python2.7/dist-packages/qiime/pick_rep_set.py -> ../../../../share/pyshared/qiime/pick_rep_set.py lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/denoiser/Data -> ../../../../share/qiime/support_files/denoiser/Data lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/R -> ../../../share/qiime/support_files/R lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/images -> ../../../share/qiime/support_files/images lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/js -> ../../../share/qiime/support_files/js lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/css -> ../../../share/qiime/support_files/css lrwxrwxrwx root/root 0 2012-08-14 19:05 ./usr/lib/qiime/support_files/jar/king.jar -> ../../../../share/java/king.jar qiime_1.5.0+repack-2ubuntu4_amd64.changes: Format: 1.8 Date: Tue, 14 Aug 2012 17:53:13 +0100 Source: qiime Binary: qiime qiime-doc Architecture: amd64 Version: 1.5.0+repack-2ubuntu4 Distribution: precise Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Tim Booth Description: qiime - Quantitative Insights Into Microbial Ecology qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial) Changes: qiime (1.5.0+repack-2ubuntu4) precise; urgency=low . * Remove python26_trim_sff_primers.patch as Qiime now requires 2.7 anyway * Avoid calling dh_auto_clean at all as it triggers a partial rebuild * Added various support files in /usr/share/qiime/support_files * Added various symlinks as Qiime wants everything in one place * Set python-biom-format as a hard dependency because even built-in self-test won't start without it * Added patch to self-test where it looks for default config file * Modified to work with new RDP-classifier package Checksums-Sha1: 26eed48c711f1ea5d59a2e1c1bc4afd355405127 1058436 qiime_1.5.0+repack-2ubuntu4_amd64.deb Checksums-Sha256: ab7afec9b9fb1d8edf1650098a4823747ee6adacc3e4a5b090b121efe5515aa0 1058436 qiime_1.5.0+repack-2ubuntu4_amd64.deb Files: 780e964cccf426947e8a4f361bbf093f 1058436 science extra qiime_1.5.0+repack-2ubuntu4_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/qiime-1.5.0+repack ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base python-docutils libjs-underscore libavahi-common3 libx11-data fontconfig-config ttf-dejavu-core gettext file zlib1g-dev fontconfig libcairo2 sphinx-common python-cogent libjs-sphinxdoc x11-common python-numpy python-matplotlib libcroco3 ghc python-dateutil python-support libxi6 libatk1.0-data gir1.2-glib-2.0 libgettextpo0 libfreetype6 python-tz libffi-dev libgmp-dev libatk1.0-0 libxcursor1 libgtk2.0-0 python2.7 python-pygments liblapack3gf libxcb1 libexpat1-dev libgdk-pixbuf2.0-0 libjasper1 html2text libxrandr2 debhelper libfontconfig1 libgmpxx4ldbl sgml-base libthai0 python-roman python tcl8.5 libmagic1 libblas3gf python-gobject libxcb-shm0 libtiff4 libgfortran3 libexpat1 python-sphinx libssl-dev bsdmainutils python-cairo libxau6 libbsd0 libgdk-pixbuf2.0-common libx11-6 libxcomposite1 tk8.5 mime-support libxdamage1 ttf-lyx shared-mime-info libxfixes3 libxdmcp6 libjpeg-turbo8 libxss1 python-jinja2 po-debconf libxml2 libjpeg8 libthai-data python-all-dev python-all python-gi python-dev man-db intltool-debian python2.7-dev python-gobject-2 libpixman-1-0 libavahi-client3 libxrender1 libpython2.7 xml-core python-markupsafe libpango1.0-0 libcups2 dh-apparmor libjs-jquery ucf libdatrie1 libgirepository-1.0-1 libgtk2.0-common python-matplotlib-data gettext-base libunistring0 libavahi-common-data libxft2 libxext6 docutils-common ghc6 libpipeline1 libxcb-render0 libxinerama1 python-pyparsing libbsd-dev (Reading database ... 20874 files and directories currently installed.) Removing python-cogent ... Removing python-matplotlib ... Removing python-dateutil ... Removing python-support ... Purging configuration files for python-support ... Removing python-tz ... Removing libgtk2.0-0 ... Purging configuration files for libgtk2.0-0 ... Removing libgdk-pixbuf2.0-0 ... Purging configuration files for libgdk-pixbuf2.0-0 ... Removing libjasper1 ... Purging configuration files for libjasper1 ... Removing libxrandr2 ... Purging configuration files for libxrandr2 ... Removing debhelper ... Removing python-gobject ... Removing libtiff4 ... Purging configuration files for libtiff4 ... Removing python-sphinx ... Removing python-cairo ... Removing libgdk-pixbuf2.0-common ... Removing libxcomposite1 ... Purging configuration files for libxcomposite1 ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libxdamage1 ... Purging configuration files for libxdamage1 ... Removing shared-mime-info ... Purging configuration files for shared-mime-info ... 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Purging configuration files for libxml2 ... Removing xml-core ... Purging configuration files for xml-core ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed. Removing ucf ... Purging configuration files for ucf ... Removing libavahi-common-data ... Removing libx11-data ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing sgml-base ... Purging configuration files for sgml-base ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20120814-1906 Build needed 00:00:27, 73432k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'f060d6500dfbed4adcec86f391852321a7ae89ad'] Scanning for processes to kill in build /home/buildd/build-f060d6500dfbed4adcec86f391852321a7ae89ad/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'f060d6500dfbed4adcec86f391852321a7ae89ad'] Unmounting chroot for build f060d6500dfbed4adcec86f391852321a7ae89ad... none /home/buildd/build-f060d6500dfbed4adcec86f391852321a7ae89ad/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-f060d6500dfbed4adcec86f391852321a7ae89ad/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-f060d6500dfbed4adcec86f391852321a7ae89ad/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-f060d6500dfbed4adcec86f391852321a7ae89ad/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'f060d6500dfbed4adcec86f391852321a7ae89ad'] Removing build f060d6500dfbed4adcec86f391852321a7ae89ad