RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 28 Aug 09:55:13 ntpdate[3410]: step time server 10.211.37.1 offset -1165345.116844 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '78d30c5a27ec86ece0b237cdc8e89671aa083efd', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build 78d30c5a27ec86ece0b237cdc8e89671aa083efd RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '78d30c5a27ec86ece0b237cdc8e89671aa083efd'] Mounting chroot for build 78d30c5a27ec86ece0b237cdc8e89671aa083efd RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '78d30c5a27ec86ece0b237cdc8e89671aa083efd', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-78d30c5a27ec86ece0b237cdc8e89671aa083efd RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '78d30c5a27ec86ece0b237cdc8e89671aa083efd', 'i386'] Updating debian chroot for build 78d30c5a27ec86ece0b237cdc8e89671aa083efd Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Get:5 http://ftpmaster.internal precise-security Release [49.6 kB] Ign http://ppa.launchpad.net precise InRelease Get:6 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:7 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:8 http://ppa.launchpad.net precise Release.gpg [316 B] Get:9 http://ppa.launchpad.net precise Release [11.9 kB] Ign http://ppa.launchpad.net precise Release Get:10 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:11 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:12 http://ppa.launchpad.net precise/main i386 Packages [5075 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [160 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [38.8 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [1394 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [371 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [121 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [2540 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [73.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [587 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [24.2 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [177 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [1600 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [72.7 kB] Fetched 11.6 MB in 7s (1641 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils udev upstart 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After this operation, 37.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.4 MB in 1s (12.6 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '78d30c5a27ec86ece0b237cdc8e89671aa083efd', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'qiime_1.5.0+repack-2ubuntu4.dsc'] Initiating build 78d30c5a27ec86ece0b237cdc8e89671aa083efd with 2 jobs across 2 processor cores. Automatic build of qiime_1.5.0+repack-2ubuntu4 on actinium by sbuild/i386 1.170.5 Build started at 20120814-2216 ****************************************************************************** qiime_1.5.0+repack-2ubuntu4.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), python-all-dev (>= 2.7), python-cogent (>= 1.5.1), python-numpy, python-matplotlib, ghc6, python-sphinx Checking for already installed source dependencies... debhelper: missing python-all-dev: missing python-cogent: missing python-numpy: missing python-matplotlib: missing ghc6: missing python-sphinx: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev python-cogent python-numpy python-matplotlib ghc6 python-sphinx Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor docutils-common file fontconfig fontconfig-config gettext gettext-base ghc gir1.2-glib-2.0 groff-base html2text intltool-debian libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libbsd-dev libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libffi-dev libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgettextpo0 libgfortran3 libgirepository-1.0-1 libgmp-dev libgmpxx4ldbl libgtk2.0-0 libgtk2.0-common libjasper1 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3gf libmagic1 libpango1.0-0 libpipeline1 libpixman-1-0 libpython2.7 libssl-dev libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-cairo python-dateutil python-dev python-docutils python-gi python-gobject python-gobject-2 python-jinja2 python-markupsafe python-matplotlib-data python-pygments python-pyparsing python-roman python-support python-tz python2.7 python2.7-dev sgml-base shared-mime-info sphinx-common tcl8.5 tk8.5 ttf-dejavu-core ttf-lyx ucf x11-common xml-core zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc ghc-prof ghc-doc haskell-doc llvm-3.0 groff cups-common libgmp10-doc libmpfr-dev librsvg2-common gvfs libjasper-runtime javascript-common ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french ttf-linux-libertine python-gi-cairo python-gobject-2-dbg python-jinja2-doc dvipng ipython python-configobj python-excelerator python-gtk2 python-matplotlib-doc python-qt3 python-qt4 python-scipy python-traits python-wxgtk2.8 texlive-extra-utils texlive-latex-extra python-numpy-doc python-numpy-dbg python-nose gfortran ttf-bitstream-vera jsmath libjs-mathjax texlive-fonts-recommended python2.7-doc sgml-base-doc tclreadline Recommended packages: curl wget lynx-cur hicolor-icon-theme libgtk2.0-bin libssl-doc libmail-sendmail-perl python-imaging libpaper-utils python-lxml docutils-doc python-pkg-resources python-glade2 python-chardet sphinx-doc xterm x-terminal-emulator The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor docutils-common file fontconfig fontconfig-config gettext gettext-base ghc ghc6 gir1.2-glib-2.0 groff-base html2text intltool-debian libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3gf libbsd-dev libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libffi-dev libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgettextpo0 libgfortran3 libgirepository-1.0-1 libgmp-dev libgmpxx4ldbl libgtk2.0-0 libgtk2.0-common libjasper1 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3gf libmagic1 libpango1.0-0 libpipeline1 libpixman-1-0 libpython2.7 libssl-dev libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-all-dev python-cairo python-cogent python-dateutil python-dev python-docutils python-gi python-gobject python-gobject-2 python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-numpy python-pygments python-pyparsing python-roman python-sphinx python-support python-tz python2.7 python2.7-dev sgml-base shared-mime-info sphinx-common tcl8.5 tk8.5 ttf-dejavu-core ttf-lyx ucf x11-common xml-core zlib1g-dev 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 109 MB of archives. After this operation, 365 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libbsd0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libatk1.0-data libatk1.0-0 libavahi-common-data libavahi-common3 libavahi-client3 libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpixman-1-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libcroco3 libcups2 libdatrie1 libjpeg-turbo8 libjpeg8 libjasper1 libtiff4 libgdk-pixbuf2.0-common libgdk-pixbuf2.0-0 libunistring0 libgettextpo0 libgfortran3 libgmpxx4ldbl libgtk2.0-common libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libxcomposite1 libxfixes3 libxcursor1 libxdamage1 libxi6 libxinerama1 libxrandr2 shared-mime-info libgtk2.0-0 x11-common libxss1 ttf-lyx libmagic1 file mime-support python2.7 python bsdmainutils gettext-base libgirepository-1.0-1 gir1.2-glib-2.0 groff-base man-db python-gi sgml-base xml-core html2text gettext intltool-debian po-debconf dh-apparmor debhelper docutils-common libgmp-dev libffi-dev libbsd-dev ghc ghc6 libblas3gf libexpat1-dev libjs-jquery libjs-underscore libjs-sphinxdoc liblapack3gf libpython2.7 zlib1g-dev libssl-dev python-all python2.7-dev python-dev python-all-dev python-cairo python-dateutil python-roman python-docutils python-gobject-2 python-gobject python-markupsafe python-jinja2 python-matplotlib-data python-pyparsing python-tz python-numpy python-support tcl8.5 tk8.5 python-matplotlib python-pygments sphinx-common python-sphinx python-cogent Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libbsd0 i386 0.3.0-2 [31.9 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-4 [8344 B] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-4 [13.0 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.8.1-1 [48.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.99.1-0ubuntu2 [770 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxext6 i386 2:1.3.0-3build1 [33.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libatk1.0-data all 2.4.0-0ubuntu1 [12.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libatk1.0-0 i386 2.4.0-0ubuntu1 [58.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libavahi-common-data i386 0.6.30-5ubuntu2 [22.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libavahi-common3 i386 0.6.30-5ubuntu2 [26.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libavahi-client3 i386 0.6.30-5ubuntu2 [30.0 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1 i386 2.0.1-7.2ubuntu1.1 [130 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.8-1ubuntu2 [345 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core all 2.33-2ubuntu1 [1552 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config all 2.8.0-3ubuntu9 [44.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 i386 2.8.0-3ubuntu9 [125 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libpixman-1-0 i386 0.24.4-1 [243 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libxcb-render0 i386 1.8.1-1 [14.2 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libxcb-shm0 i386 1.8.1-1 [5682 B] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 i386 1:0.9.6-2build1 [20.0 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main libcairo2 i386 1.10.2-6.1ubuntu3 [490 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-updates/main libcups2 i386 1.5.3-0ubuntu3 [173 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libdatrie1 i386 0.2.5-3 [16.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu4.1 [118 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu7 [2112 B] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libjasper1 i386 1.900.1-13 [153 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise-security/main libtiff4 i386 3.9.5-2ubuntu1.2 [142 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libgdk-pixbuf2.0-common all 2.26.1-1 [7818 B] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libgdk-pixbuf2.0-0 i386 2.26.1-1 [194 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libgfortran3 i386 4.6.3-1ubuntu5 [355 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libgmpxx4ldbl i386 2:5.0.2+dfsg-2ubuntu1 [8638 B] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libgtk2.0-common all 2.24.10-0ubuntu6 [119 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libthai-data all 0.1.16-3 [179 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libthai0 i386 0.1.16-3 [20.2 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libxft2 i386 2.2.0-3ubuntu2 [42.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main fontconfig i386 2.8.0-3ubuntu9 [154 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise-updates/main libpango1.0-0 i386 1.30.0-0ubuntu3.1 [361 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libxcomposite1 i386 1:0.4.3-2build1 [7634 B] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libxfixes3 i386 1:5.0-4ubuntu4 [12.4 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libxcursor1 i386 1:1.1.12-1 [23.0 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libxdamage1 i386 1:1.1.3-2build1 [7390 B] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libxi6 i386 2:1.6.0-0ubuntu2 [30.8 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libxinerama1 i386 2:1.1.1-3build1 [8092 B] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libxrandr2 i386 2:1.3.2-2 [17.7 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise-updates/main shared-mime-info i386 1.0-0ubuntu4.1 [497 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libgtk2.0-0 i386 2.24.10-0ubuntu6 [2681 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main x11-common all 1:7.6+12ubuntu1 [57.7 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main libxss1 i386 1:1.2.1-2 [8604 B] Get:56 http://ftpmaster.internal/ubuntu/ precise/universe ttf-lyx all 2.0.2-1ubuntu2 [151 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7 i386 2.7.3-0ubuntu3.1 [2652 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main python i386 2.7.3-0ubuntu2 [166 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libgirepository-1.0-1 i386 1.32.0-1 [104 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main gir1.2-glib-2.0 i386 1.32.0-1 [157 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise-updates/main python-gi i386 3.2.2-1~precise [219 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main sgml-base all 1.26+nmu1ubuntu1 [8360 B] Get:70 http://ftpmaster.internal/ubuntu/ precise/main xml-core all 0.13 [23.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:76 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main docutils-common all 0.8.1-4ubuntu1 [153 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/main libgmp-dev i386 2:5.0.2+dfsg-2ubuntu1 [361 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/main libffi-dev i386 3.0.11~rc1-5 [87.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/main libbsd-dev i386 0.3.0-2 [93.2 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/universe ghc i386 7.4.1-1ubuntu2 [41.5 MB] Get:82 http://ftpmaster.internal/ubuntu/ precise/universe ghc6 all 7.4.1-1ubuntu2 [5086 B] Get:83 http://ftpmaster.internal/ubuntu/ precise/main libblas3gf i386 1.2.20110419-2ubuntu1 [204 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1-dev i386 2.0.1-7.2ubuntu1.1 [208 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/main libjs-jquery all 1.7.1-1ubuntu1 [111 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/main libjs-underscore all 1.1.6-1ubuntu2 [31.3 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise-updates/main libjs-sphinxdoc all 1.1.3+dfsg-2ubuntu2.1 [45.1 kB] Get:88 http://ftpmaster.internal/ubuntu/ precise/main liblapack3gf i386 3.3.1-1 [3209 kB] Get:89 http://ftpmaster.internal/ubuntu/ precise-updates/main libpython2.7 i386 2.7.3-0ubuntu3.1 [1149 kB] Get:90 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] Get:91 http://ftpmaster.internal/ubuntu/ precise-security/main libssl-dev i386 1.0.1-4ubuntu5.3 [1418 kB] Get:92 http://ftpmaster.internal/ubuntu/ precise/main python-all i386 2.7.3-0ubuntu2 [916 B] Get:93 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-dev i386 2.7.3-0ubuntu3.1 [29.2 MB] Get:94 http://ftpmaster.internal/ubuntu/ precise/main python-dev i386 2.7.3-0ubuntu2 [1084 B] Get:95 http://ftpmaster.internal/ubuntu/ precise/main python-all-dev i386 2.7.3-0ubuntu2 [928 B] Get:96 http://ftpmaster.internal/ubuntu/ precise/main python-cairo i386 1.8.8-1ubuntu3 [50.4 kB] Get:97 http://ftpmaster.internal/ubuntu/ precise/main python-dateutil all 1.5-1 [54.2 kB] Get:98 http://ftpmaster.internal/ubuntu/ precise/main python-roman all 0.8.1-4ubuntu1 [12.6 kB] Get:99 http://ftpmaster.internal/ubuntu/ precise/main python-docutils all 0.8.1-4ubuntu1 [382 kB] Get:100 http://ftpmaster.internal/ubuntu/ precise/main python-gobject-2 i386 2.28.6-10ubuntu1 [228 kB] Get:101 http://ftpmaster.internal/ubuntu/ precise-updates/main python-gobject all 3.2.2-1~precise [2468 B] Get:102 http://ftpmaster.internal/ubuntu/ precise/main python-markupsafe i386 0.15-1 [13.6 kB] Get:103 http://ftpmaster.internal/ubuntu/ precise/main python-jinja2 i386 2.6-1 [158 kB] Get:104 http://ftpmaster.internal/ubuntu/ precise/universe python-matplotlib-data all 1.1.1~rc1+git20120423-0ubuntu1 [1945 kB] Get:105 http://ftpmaster.internal/ubuntu/ precise/universe python-pyparsing all 1.5.2-2ubuntu1 [586 kB] Get:106 http://ftpmaster.internal/ubuntu/ precise/main python-tz all 2011k-0ubuntu5 [44.9 kB] Get:107 http://ftpmaster.internal/ubuntu/ precise/main python-numpy i386 1:1.6.1-6ubuntu1 [1839 kB] Get:108 http://ftpmaster.internal/ubuntu/ precise/universe python-support all 1.0.14ubuntu2 [26.1 kB] Get:109 http://ftpmaster.internal/ubuntu/ precise/main tcl8.5 i386 8.5.11-1ubuntu1 [1097 kB] Get:110 http://ftpmaster.internal/ubuntu/ precise/main tk8.5 i386 8.5.11-1 [996 kB] Get:111 http://ftpmaster.internal/ubuntu/ precise/universe python-matplotlib i386 1.1.1~rc1+git20120423-0ubuntu1 [1780 kB] Get:112 http://ftpmaster.internal/ubuntu/ precise/main python-pygments all 1.4+dfsg-2 [353 kB] Get:113 http://ftpmaster.internal/ubuntu/ precise-updates/main sphinx-common all 1.1.3+dfsg-2ubuntu2.1 [412 kB] Get:114 http://ftpmaster.internal/ubuntu/ precise-updates/main python-sphinx all 1.1.3+dfsg-2ubuntu2.1 [312 kB] Get:115 http://ftpmaster.internal/ubuntu/ precise/universe python-cogent i386 1.5.1-2 [1642 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 109 MB in 8s (13.5 MB/s) Selecting previously unselected package libbsd0. (Reading database ... 12283 files and directories currently installed.) Unpacking libbsd0 (from .../libbsd0_0.3.0-2_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_i386.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8.1-1_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu2_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu2_i386.deb) ... Selecting previously unselected package libxext6. Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3build1_i386.deb) ... 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Setting up fontconfig (2.8.0-3ubuntu9) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0 (1.30.0-0ubuntu3.1) ... Setting up libxcomposite1 (1:0.4.3-2build1) ... Setting up libxfixes3 (1:5.0-4ubuntu4) ... Setting up libxcursor1 (1:1.1.12-1) ... Setting up libxdamage1 (1:1.1.3-2build1) ... Setting up libxi6 (2:1.6.0-0ubuntu2) ... Setting up libxinerama1 (2:1.1.1-3build1) ... Setting up libxrandr2 (2:1.3.2-2) ... Setting up shared-mime-info (1.0-0ubuntu4.1) ... Setting up libgtk2.0-0 (2.24.10-0ubuntu6) ... Setting up x11-common (1:7.6+12ubuntu1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libxss1 (1:1.2.1-2) ... Setting up ttf-lyx (2.0.2-1ubuntu2) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7 (2.7.3-0ubuntu3.1) ... 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Setting up libffi-dev (3.0.11~rc1-5) ... Setting up libbsd-dev (0.3.0-2) ... Setting up ghc (7.4.1-1ubuntu2) ... update-alternatives: using /usr/bin/runghc to provide /usr/bin/runhaskell (runhaskell) in auto mode. update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode. 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/usr/lib/ghc-doc/haddock/containers-0.4.2.1/containers.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/containers-0.4.2.1 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/extensible-exceptions-0.1.1.4/extensible-exceptions.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/extensible-exceptions-0.1.1.4 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/time-1.4/time.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/time-1.4 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/pretty-1.1.1.0/pretty.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/pretty-1.1.1.0 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/hpc-0.5.1.1/hpc.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/hpc-0.5.1.1 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/bytestring-0.9.2.1/bytestring.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/bytestring-0.9.2.1 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/haskell2010-1.1.0.1/haskell2010.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/haskell2010-1.1.0.1 doesn't exist or isn't a directory Warning: haddock-interfaces: /usr/lib/ghc-doc/haddock/haskell98-2.0.0.1/haskell98.haddock doesn't exist or isn't a file Warning: haddock-html: /usr/share/doc/ghc-doc/html/libraries/haskell98-2.0.0.1 doesn't exist or isn't a directory Setting up ghc6 (7.4.1-1ubuntu2) ... Setting up libblas3gf (1.2.20110419-2ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up libexpat1-dev (2.0.1-7.2ubuntu1.1) ... Setting up libjs-jquery (1.7.1-1ubuntu1) ... Setting up libjs-underscore (1.1.6-1ubuntu2) ... Setting up libjs-sphinxdoc (1.1.3+dfsg-2ubuntu2.1) ... Setting up liblapack3gf (3.3.1-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libpython2.7 (2.7.3-0ubuntu3.1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libssl-dev (1.0.1-4ubuntu5.3) ... Setting up python-all (2.7.3-0ubuntu2) ... Setting up python2.7-dev (2.7.3-0ubuntu3.1) ... Setting up python-dev (2.7.3-0ubuntu2) ... Setting up python-all-dev (2.7.3-0ubuntu2) ... Setting up python-cairo (1.8.8-1ubuntu3) ... Setting up python-dateutil (1.5-1) ... Setting up python-roman (0.8.1-4ubuntu1) ... Setting up python-docutils (0.8.1-4ubuntu1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode. update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode. Setting up python-gobject-2 (2.28.6-10ubuntu1) ... Setting up python-gobject (3.2.2-1~precise) ... Setting up python-markupsafe (0.15-1) ... Setting up python-jinja2 (2.6-1) ... Setting up python-matplotlib-data (1.1.1~rc1+git20120423-0ubuntu1) ... Setting up python-pyparsing (1.5.2-2ubuntu1) ... Setting up python-tz (2011k-0ubuntu5) ... Setting up python-numpy (1:1.6.1-6ubuntu1) ... Setting up python-support (1.0.14ubuntu2) ... Setting up tcl8.5 (8.5.11-1ubuntu1) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.11-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up python-matplotlib (1.1.1~rc1+git20120423-0ubuntu1) ... Setting up python-pygments (1.4+dfsg-2) ... Setting up sphinx-common (1.1.3+dfsg-2ubuntu2.1) ... Setting up python-sphinx (1.1.3+dfsg-2ubuntu2.1) ... Setting up python-cogent (1.5.1-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Aug 14 16:54:13 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./qiime_1.5.0+repack-2ubuntu4.dsc dpkg-source: info: extracting qiime in qiime-1.5.0+repack dpkg-source: info: unpacking qiime_1.5.0+repack.orig.tar.gz dpkg-source: info: unpacking qiime_1.5.0+repack-2ubuntu4.debian.tar.gz dpkg-source: info: applying check_config_file_in_new_location.patch dpkg-source: info: applying fix_binary_helper_location.patch dpkg-buildpackage: source package qiime dpkg-buildpackage: source version 1.5.0+repack-2ubuntu4 dpkg-source --before-build qiime-1.5.0+repack dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' #Calling "python setup.py clean -a" actually triggers a #rebuild, so don't do it. rm -rf build rm -rf doc/_build ( cd qiime/support_files/denoiser/FlowgramAlignment && make clean ) || true make[2]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' rm *.o rm: cannot remove `*.o': No such file or directory make[2]: *** [clean] Error 1 make[2]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' rm -f qiime/support_files/denoiser/bin/* make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_clean debian/rules build dh build --with python2 dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' ghc --make -O2 FlowgramAli_4frame [1 of 3] Compiling ADPCombinators ( ADPCombinators.lhs, ADPCombinators.o ) [2 of 3] Compiling FlowgramUtils ( FlowgramUtils.lhs, FlowgramUtils.o ) [3 of 3] Compiling Main ( FlowgramAli_4frame.lhs, FlowgramAli_4frame.o ) Linking FlowgramAli_4frame ... make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running build running build_py creating build creating build/lib.linux-i686-2.7 creating build/lib.linux-i686-2.7/qiime copying qiime/process_sff.py -> build/lib.linux-i686-2.7/qiime copying qiime/conditional_uncovered_probability.py -> build/lib.linux-i686-2.7/qiime copying qiime/pick_rep_set.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_phylogeny.py -> build/lib.linux-i686-2.7/qiime copying qiime/truncate_fasta_qual_files.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_2d_plots.py -> build/lib.linux-i686-2.7/qiime copying qiime/hierarchical_cluster.py -> build/lib.linux-i686-2.7/qiime copying qiime/pick_subsampled_reference_otus_through_otu_table.py -> build/lib.linux-i686-2.7/qiime copying qiime/cluster_quality.py -> build/lib.linux-i686-2.7/qiime copying qiime/insert_seqs_into_tree.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_otu_network.py -> build/lib.linux-i686-2.7/qiime copying qiime/beta_metrics.py -> build/lib.linux-i686-2.7/qiime copying qiime/otu_category_significance.py -> build/lib.linux-i686-2.7/qiime copying qiime/format.py -> build/lib.linux-i686-2.7/qiime copying qiime/submit_to_mgrast.py -> build/lib.linux-i686-2.7/qiime copying qiime/filter.py -> build/lib.linux-i686-2.7/qiime copying qiime/beta_diversity.py -> build/lib.linux-i686-2.7/qiime copying qiime/adjust_seq_orientation.py -> build/lib.linux-i686-2.7/qiime copying qiime/align_seqs.py -> build/lib.linux-i686-2.7/qiime copying qiime/nmds.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_rarefaction_plots.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_otu_heatmap.py -> build/lib.linux-i686-2.7/qiime copying qiime/filter_otus_by_sample.py -> build/lib.linux-i686-2.7/qiime copying qiime/sort.py -> build/lib.linux-i686-2.7/qiime copying qiime/colors.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_distance_histograms.py -> build/lib.linux-i686-2.7/qiime copying qiime/rarefaction.py -> build/lib.linux-i686-2.7/qiime copying qiime/util.py -> build/lib.linux-i686-2.7/qiime copying qiime/trim_sff_primers.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_per_library_sff.py -> build/lib.linux-i686-2.7/qiime copying qiime/transform_coordinate_matrices.py -> build/lib.linux-i686-2.7/qiime copying qiime/merge_mapping_files.py -> build/lib.linux-i686-2.7/qiime copying qiime/truncate_reverse_primer.py -> build/lib.linux-i686-2.7/qiime copying qiime/collate_alpha.py -> build/lib.linux-i686-2.7/qiime copying qiime/split.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_bootstrapped_tree.py -> build/lib.linux-i686-2.7/qiime copying qiime/check_id_map.py -> build/lib.linux-i686-2.7/qiime copying qiime/supervised_learning.py -> build/lib.linux-i686-2.7/qiime copying qiime/clean_raxml_parsimony_tree.py -> build/lib.linux-i686-2.7/qiime copying qiime/compare_alpha_diversity.py -> build/lib.linux-i686-2.7/qiime copying qiime/tree_compare.py -> build/lib.linux-i686-2.7/qiime copying qiime/pick_otus.py -> build/lib.linux-i686-2.7/qiime copying qiime/denoise_wrapper.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_fastq.py -> build/lib.linux-i686-2.7/qiime copying qiime/add_qiime_labels.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_otu_heatmap_html.py -> build/lib.linux-i686-2.7/qiime copying qiime/summarize_taxa.py -> build/lib.linux-i686-2.7/qiime copying qiime/split_libraries_fastq.py -> build/lib.linux-i686-2.7/qiime copying qiime/assign_taxonomy.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_3d_plots.py -> build/lib.linux-i686-2.7/qiime copying qiime/plot_semivariogram.py -> build/lib.linux-i686-2.7/qiime copying qiime/shared_phylotypes.py -> build/lib.linux-i686-2.7/qiime copying qiime/parse.py -> build/lib.linux-i686-2.7/qiime copying qiime/hamming.py -> build/lib.linux-i686-2.7/qiime copying qiime/__init__.py -> build/lib.linux-i686-2.7/qiime copying qiime/group.py -> build/lib.linux-i686-2.7/qiime copying qiime/distance_matrix_from_mapping.py -> build/lib.linux-i686-2.7/qiime copying qiime/quality.py -> build/lib.linux-i686-2.7/qiime copying qiime/test.py -> build/lib.linux-i686-2.7/qiime copying qiime/longitudinal_otu_category_significance.py -> build/lib.linux-i686-2.7/qiime copying qiime/biplots.py -> build/lib.linux-i686-2.7/qiime copying qiime/split_libraries.py -> build/lib.linux-i686-2.7/qiime copying qiime/exclude_seqs_by_blast.py -> build/lib.linux-i686-2.7/qiime copying qiime/stats.py -> build/lib.linux-i686-2.7/qiime copying qiime/plot_rank_abundance_graph.py -> build/lib.linux-i686-2.7/qiime copying qiime/convert_fastaqual_to_fastq.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_otu_table.py -> build/lib.linux-i686-2.7/qiime copying qiime/alpha_diversity.py -> build/lib.linux-i686-2.7/qiime copying qiime/plot_taxa_summary.py -> build/lib.linux-i686-2.7/qiime copying qiime/barcode.py -> build/lib.linux-i686-2.7/qiime copying qiime/quality_scores_plot.py -> build/lib.linux-i686-2.7/qiime copying qiime/filter_alignment.py -> build/lib.linux-i686-2.7/qiime copying qiime/workflow.py -> build/lib.linux-i686-2.7/qiime copying qiime/categorized_dist_scatterplot.py -> build/lib.linux-i686-2.7/qiime copying qiime/golay.py -> build/lib.linux-i686-2.7/qiime copying qiime/validate_demultiplexed_fasta.py -> build/lib.linux-i686-2.7/qiime copying qiime/simsam.py -> build/lib.linux-i686-2.7/qiime copying qiime/identify_chimeric_seqs.py -> build/lib.linux-i686-2.7/qiime copying qiime/principal_coordinates.py -> build/lib.linux-i686-2.7/qiime copying qiime/relatedness_library.py -> build/lib.linux-i686-2.7/qiime copying qiime/make_library_id_lists.py -> build/lib.linux-i686-2.7/qiime copying qiime/compare_distance_matrices.py -> build/lib.linux-i686-2.7/qiime creating build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/assign_taxonomy_blast.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/assign_taxonomy_rdp.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/pick_otus_blast.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/beta_diversity.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/util.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/blast.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/align_seqs_pynast.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/__init__.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/multiple_rarefactions.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/alpha_diversity.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/pick_otus_uclust_ref.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/poller.py -> build/lib.linux-i686-2.7/qiime/parallel copying qiime/parallel/identify_chimeric_seqs.py -> build/lib.linux-i686-2.7/qiime/parallel creating build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/usearch.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/pplacer.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/muscle.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/rdp_classifier.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/uclust.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/guppy.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/parsinsert.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/mothur.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/tree.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/__init__.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/rtax.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/raxml_v730.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports copying qiime/pycogent_backports/distribution_plots.py -> build/lib.linux-i686-2.7/qiime/pycogent_backports creating build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/utils.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/preprocess.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/flowgram_clustering.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/make_cluster_jobs.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/denoise_worker.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/cluster_utils.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/__init__.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/flowgram_filter.py -> build/lib.linux-i686-2.7/qiime/denoiser copying qiime/denoiser/denoise_postprocess.py -> build/lib.linux-i686-2.7/qiime/denoiser creating build/lib.linux-i686-2.7/qiime/support_files copying qiime/support_files/qiime_config -> build/lib.linux-i686-2.7/qiime/support_files creating build/lib.linux-i686-2.7/qiime/support_files/css copying qiime/support_files/css/qiime_style.css -> build/lib.linux-i686-2.7/qiime/support_files/css creating build/lib.linux-i686-2.7/qiime/support_files/images copying qiime/support_files/images/qiime_header.png -> build/lib.linux-i686-2.7/qiime/support_files/images creating build/lib.linux-i686-2.7/qiime/support_files/jar copying qiime/support_files/jar/king.jar -> build/lib.linux-i686-2.7/qiime/support_files/jar creating build/lib.linux-i686-2.7/qiime/support_files/js copying qiime/support_files/js/otu_count_display.js -> build/lib.linux-i686-2.7/qiime/support_files/js copying qiime/support_files/js/jquery.tablednd_0_5.js -> build/lib.linux-i686-2.7/qiime/support_files/js copying qiime/support_files/js/histograms.js -> build/lib.linux-i686-2.7/qiime/support_files/js copying qiime/support_files/js/overlib.js -> build/lib.linux-i686-2.7/qiime/support_files/js copying qiime/support_files/js/jquery.js -> build/lib.linux-i686-2.7/qiime/support_files/js creating build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/adonis.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/randomforests_util.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/randomforests.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/betadisper.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/rda.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/morans_i.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/loaddata.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/util.r -> build/lib.linux-i686-2.7/qiime/support_files/R copying qiime/support_files/R/mrpp.r -> build/lib.linux-i686-2.7/qiime/support_files/R creating build/lib.linux-i686-2.7/qiime/support_files/denoiser creating build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/probabilities.txt -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data copying qiime/support_files/denoiser/Data/FLX_error_profile.dat -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data creating build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_set_seqs.fna -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/test_flow_file.dat -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData copying qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData running build_scripts creating build/scripts-2.7 copying and adjusting scripts/process_sff.py -> build/scripts-2.7 copying and adjusting scripts/extract_seqs_by_sample_id.py -> build/scripts-2.7 copying and adjusting scripts/conditional_uncovered_probability.py -> build/scripts-2.7 copying and adjusting scripts/pick_rep_set.py -> build/scripts-2.7 copying and adjusting scripts/make_phylogeny.py -> build/scripts-2.7 copying and adjusting scripts/unweight_fasta.py -> build/scripts-2.7 copying and adjusting scripts/parallel_assign_taxonomy_blast.py -> build/scripts-2.7 copying and adjusting scripts/denoiser_worker.py -> build/scripts-2.7 copying and adjusting scripts/neighbor_joining.py -> build/scripts-2.7 copying and adjusting scripts/truncate_fasta_qual_files.py -> build/scripts-2.7 copying and adjusting scripts/make_tep.py -> build/scripts-2.7 copying and adjusting scripts/parallel_blast.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs.py -> build/scripts-2.7 copying and adjusting scripts/make_prefs_file.py -> build/scripts-2.7 copying and adjusting scripts/compare_categories.py -> build/scripts-2.7 copying and adjusting scripts/make_2d_plots.py -> build/scripts-2.7 copying and adjusting scripts/consensus_tree.py -> build/scripts-2.7 copying and adjusting scripts/make_qiime_py_file.py -> build/scripts-2.7 copying and adjusting scripts/ampliconnoise.py -> build/scripts-2.7 copying and adjusting scripts/filter_samples_from_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/process_iseq.py -> build/scripts-2.7 copying and adjusting scripts/dissimilarity_mtx_stats.py -> build/scripts-2.7 copying and adjusting scripts/pick_subsampled_reference_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/split_otu_table_by_taxonomy.py -> build/scripts-2.7 copying and adjusting scripts/subsample_fasta.py -> build/scripts-2.7 copying and adjusting scripts/parallel_beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/cluster_quality.py -> build/scripts-2.7 copying and adjusting scripts/insert_seqs_into_tree.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_comparison_plots.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_network.py -> build/scripts-2.7 copying and adjusting scripts/poller_example.py -> build/scripts-2.7 copying and adjusting scripts/process_qseq.py -> build/scripts-2.7 copying and adjusting scripts/otu_category_significance.py -> build/scripts-2.7 copying and adjusting scripts/filter_tree.py -> build/scripts-2.7 copying and adjusting scripts/blast_wrapper.py -> build/scripts-2.7 copying and adjusting scripts/submit_to_mgrast.py -> build/scripts-2.7 copying and adjusting scripts/count_seqs.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/adjust_seq_orientation.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs_sc.py -> build/scripts-2.7 copying and adjusting scripts/summarize_taxa_through_plots.py -> build/scripts-2.7 copying and adjusting scripts/single_rarefaction.py -> build/scripts-2.7 copying and adjusting scripts/align_seqs.py -> build/scripts-2.7 copying and adjusting scripts/nmds.py -> build/scripts-2.7 copying and adjusting scripts/print_qiime_config.py -> build/scripts-2.7 copying and adjusting scripts/denoiser_preprocess.py -> build/scripts-2.7 copying and adjusting scripts/make_rarefaction_plots.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_heatmap.py -> build/scripts-2.7 copying and adjusting scripts/core_qiime_analyses.py -> build/scripts-2.7 copying and adjusting scripts/filter_otus_by_sample.py -> build/scripts-2.7 copying and adjusting scripts/pick_reference_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/parallel_identify_chimeric_seqs.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_histograms.py -> build/scripts-2.7 copying and adjusting scripts/identify_missing_files.py -> build/scripts-2.7 copying and adjusting scripts/trim_sff_primers.py -> build/scripts-2.7 copying and adjusting scripts/make_per_library_sff.py -> build/scripts-2.7 copying and adjusting scripts/transform_coordinate_matrices.py -> build/scripts-2.7 copying and adjusting scripts/merge_mapping_files.py -> build/scripts-2.7 copying and adjusting scripts/per_library_stats.py -> build/scripts-2.7 copying and adjusting scripts/truncate_reverse_primer.py -> build/scripts-2.7 copying and adjusting scripts/convert_otu_table_to_unifrac_sample_mapping.py -> build/scripts-2.7 copying and adjusting scripts/alpha_rarefaction.py -> build/scripts-2.7 copying and adjusting scripts/start_parallel_jobs_torque.py -> build/scripts-2.7 copying and adjusting scripts/collate_alpha.py -> build/scripts-2.7 copying and adjusting scripts/parallel_assign_taxonomy_rdp.py -> build/scripts-2.7 copying and adjusting scripts/parallel_multiple_rarefactions.py -> build/scripts-2.7 copying and adjusting scripts/make_bootstrapped_tree.py -> build/scripts-2.7 copying and adjusting scripts/check_id_map.py -> build/scripts-2.7 copying and adjusting scripts/convert_unifrac_sample_mapping_to_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/supervised_learning.py -> build/scripts-2.7 copying and adjusting scripts/clean_raxml_parsimony_tree.py -> build/scripts-2.7 copying and adjusting scripts/trflp_file_to_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/merge_otu_tables.py -> build/scripts-2.7 copying and adjusting scripts/compare_alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/tree_compare.py -> build/scripts-2.7 copying and adjusting scripts/pick_otus.py -> build/scripts-2.7 copying and adjusting scripts/parallel_alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/multiple_rarefactions_even_depth.py -> build/scripts-2.7 copying and adjusting scripts/relatedness.py -> build/scripts-2.7 copying and adjusting scripts/beta_diversity_through_plots.py -> build/scripts-2.7 copying and adjusting scripts/denoiser.py -> build/scripts-2.7 copying and adjusting scripts/denoise_wrapper.py -> build/scripts-2.7 copying and adjusting scripts/split_fasta_on_sample_ids.py -> build/scripts-2.7 copying and adjusting scripts/make_fastq.py -> build/scripts-2.7 copying and adjusting scripts/parallel_pick_otus_blast.py -> build/scripts-2.7 copying and adjusting scripts/add_qiime_labels.py -> build/scripts-2.7 copying and adjusting scripts/beta_significance.py -> build/scripts-2.7 copying and adjusting scripts/filter_otus_from_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/inflate_denoiser_output.py -> build/scripts-2.7 copying and adjusting scripts/pick_otus_through_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_heatmap_html.py -> build/scripts-2.7 copying and adjusting scripts/summarize_taxa.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries_fastq.py -> build/scripts-2.7 copying and adjusting scripts/assign_taxonomy.py -> build/scripts-2.7 copying and adjusting scripts/make_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/plot_semivariogram.py -> build/scripts-2.7 copying and adjusting scripts/filter_fasta.py -> build/scripts-2.7 copying and adjusting scripts/shared_phylotypes.py -> build/scripts-2.7 copying and adjusting scripts/summarize_otu_by_cat.py -> build/scripts-2.7 copying and adjusting scripts/jackknifed_beta_diversity.py -> build/scripts-2.7 copying and adjusting scripts/compare_3d_plots.py -> build/scripts-2.7 copying and adjusting scripts/merge_otu_maps.py -> build/scripts-2.7 copying and adjusting scripts/make_distance_boxplots.py -> build/scripts-2.7 copying and adjusting scripts/parallel_pick_otus_uclust_ref.py -> build/scripts-2.7 copying and adjusting scripts/distance_matrix_from_mapping.py -> build/scripts-2.7 copying and adjusting scripts/multiple_rarefactions.py -> build/scripts-2.7 copying and adjusting scripts/parallel_align_seqs_pynast.py -> build/scripts-2.7 copying and adjusting scripts/split_libraries.py -> build/scripts-2.7 copying and adjusting scripts/exclude_seqs_by_blast.py -> build/scripts-2.7 copying and adjusting scripts/plot_rank_abundance_graph.py -> build/scripts-2.7 copying and adjusting scripts/convert_fastaqual_to_fastq.py -> build/scripts-2.7 copying and adjusting scripts/make_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/alpha_diversity.py -> build/scripts-2.7 copying and adjusting scripts/plot_taxa_summary.py -> build/scripts-2.7 copying and adjusting scripts/quality_scores_plot.py -> build/scripts-2.7 copying and adjusting scripts/filter_alignment.py -> build/scripts-2.7 copying and adjusting scripts/make_qiime_rst_file.py -> build/scripts-2.7 copying and adjusting scripts/fix_arb_fasta.py -> build/scripts-2.7 copying and adjusting scripts/split_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/categorized_dist_scatterplot.py -> build/scripts-2.7 copying and adjusting scripts/filter_distance_matrix.py -> build/scripts-2.7 copying and adjusting scripts/validate_demultiplexed_fasta.py -> build/scripts-2.7 copying and adjusting scripts/poller.py -> build/scripts-2.7 copying and adjusting scripts/simsam.py -> build/scripts-2.7 copying and adjusting scripts/identify_chimeric_seqs.py -> build/scripts-2.7 copying and adjusting scripts/upgma_cluster.py -> build/scripts-2.7 copying and adjusting scripts/principal_coordinates.py -> build/scripts-2.7 copying and adjusting scripts/sort_otu_table.py -> build/scripts-2.7 copying and adjusting scripts/make_library_id_lists.py -> build/scripts-2.7 copying and adjusting scripts/add_taxa.py -> build/scripts-2.7 copying and adjusting scripts/compare_distance_matrices.py -> build/scripts-2.7 copying scripts/ec2Clean -> build/scripts-2.7 copying scripts/ec2Dispatch -> build/scripts-2.7 changing mode of build/scripts-2.7/process_sff.py from 664 to 775 changing mode of build/scripts-2.7/extract_seqs_by_sample_id.py from 664 to 775 changing mode of build/scripts-2.7/conditional_uncovered_probability.py from 664 to 775 changing mode of build/scripts-2.7/pick_rep_set.py from 664 to 775 changing mode of build/scripts-2.7/make_phylogeny.py from 664 to 775 changing mode of build/scripts-2.7/unweight_fasta.py from 664 to 775 changing mode of build/scripts-2.7/parallel_assign_taxonomy_blast.py from 664 to 775 changing mode of build/scripts-2.7/denoiser_worker.py from 664 to 775 changing mode of build/scripts-2.7/neighbor_joining.py from 664 to 775 changing mode of build/scripts-2.7/truncate_fasta_qual_files.py from 664 to 775 changing mode of build/scripts-2.7/make_tep.py from 664 to 775 changing mode of build/scripts-2.7/parallel_blast.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs.py from 664 to 775 changing mode of build/scripts-2.7/make_prefs_file.py from 664 to 775 changing mode of build/scripts-2.7/compare_categories.py from 664 to 775 changing mode of build/scripts-2.7/make_2d_plots.py from 664 to 775 changing mode of build/scripts-2.7/consensus_tree.py from 664 to 775 changing mode of build/scripts-2.7/make_qiime_py_file.py from 664 to 775 changing mode of build/scripts-2.7/ampliconnoise.py from 664 to 775 changing mode of build/scripts-2.7/filter_samples_from_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/process_iseq.py from 664 to 775 changing mode of build/scripts-2.7/dissimilarity_mtx_stats.py from 664 to 775 changing mode of build/scripts-2.7/pick_subsampled_reference_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/split_otu_table_by_taxonomy.py from 664 to 775 changing mode of build/scripts-2.7/subsample_fasta.py from 664 to 775 changing mode of build/scripts-2.7/parallel_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/cluster_quality.py from 664 to 775 changing mode of build/scripts-2.7/insert_seqs_into_tree.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_comparison_plots.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_network.py from 664 to 775 changing mode of build/scripts-2.7/poller_example.py from 664 to 775 changing mode of build/scripts-2.7/process_qseq.py from 664 to 775 changing mode of build/scripts-2.7/otu_category_significance.py from 664 to 775 changing mode of build/scripts-2.7/filter_tree.py from 664 to 775 changing mode of build/scripts-2.7/blast_wrapper.py from 664 to 775 changing mode of build/scripts-2.7/submit_to_mgrast.py from 664 to 775 changing mode of build/scripts-2.7/count_seqs.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/adjust_seq_orientation.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs_sc.py from 664 to 775 changing mode of build/scripts-2.7/summarize_taxa_through_plots.py from 664 to 775 changing mode of build/scripts-2.7/single_rarefaction.py from 664 to 775 changing mode of build/scripts-2.7/align_seqs.py from 664 to 775 changing mode of build/scripts-2.7/nmds.py from 664 to 775 changing mode of build/scripts-2.7/print_qiime_config.py from 664 to 775 changing mode of build/scripts-2.7/denoiser_preprocess.py from 664 to 775 changing mode of build/scripts-2.7/make_rarefaction_plots.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_heatmap.py from 664 to 775 changing mode of build/scripts-2.7/core_qiime_analyses.py from 664 to 775 changing mode of build/scripts-2.7/filter_otus_by_sample.py from 664 to 775 changing mode of build/scripts-2.7/pick_reference_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/parallel_identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_histograms.py from 664 to 775 changing mode of build/scripts-2.7/identify_missing_files.py from 664 to 775 changing mode of build/scripts-2.7/trim_sff_primers.py from 664 to 775 changing mode of build/scripts-2.7/make_per_library_sff.py from 664 to 775 changing mode of build/scripts-2.7/transform_coordinate_matrices.py from 664 to 775 changing mode of build/scripts-2.7/merge_mapping_files.py from 664 to 775 changing mode of build/scripts-2.7/per_library_stats.py from 664 to 775 changing mode of build/scripts-2.7/truncate_reverse_primer.py from 664 to 775 changing mode of build/scripts-2.7/convert_otu_table_to_unifrac_sample_mapping.py from 664 to 775 changing mode of build/scripts-2.7/alpha_rarefaction.py from 664 to 775 changing mode of build/scripts-2.7/start_parallel_jobs_torque.py from 664 to 775 changing mode of build/scripts-2.7/collate_alpha.py from 664 to 775 changing mode of build/scripts-2.7/parallel_assign_taxonomy_rdp.py from 664 to 775 changing mode of build/scripts-2.7/parallel_multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.7/make_bootstrapped_tree.py from 664 to 775 changing mode of build/scripts-2.7/check_id_map.py from 664 to 775 changing mode of build/scripts-2.7/convert_unifrac_sample_mapping_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/supervised_learning.py from 664 to 775 changing mode of build/scripts-2.7/clean_raxml_parsimony_tree.py from 664 to 775 changing mode of build/scripts-2.7/trflp_file_to_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/merge_otu_tables.py from 664 to 775 changing mode of build/scripts-2.7/compare_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/tree_compare.py from 664 to 775 changing mode of build/scripts-2.7/pick_otus.py from 664 to 775 changing mode of build/scripts-2.7/parallel_alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/multiple_rarefactions_even_depth.py from 664 to 775 changing mode of build/scripts-2.7/relatedness.py from 664 to 775 changing mode of build/scripts-2.7/beta_diversity_through_plots.py from 664 to 775 changing mode of build/scripts-2.7/denoiser.py from 664 to 775 changing mode of build/scripts-2.7/denoise_wrapper.py from 664 to 775 changing mode of build/scripts-2.7/split_fasta_on_sample_ids.py from 664 to 775 changing mode of build/scripts-2.7/make_fastq.py from 664 to 775 changing mode of build/scripts-2.7/parallel_pick_otus_blast.py from 664 to 775 changing mode of build/scripts-2.7/add_qiime_labels.py from 664 to 775 changing mode of build/scripts-2.7/beta_significance.py from 664 to 775 changing mode of build/scripts-2.7/filter_otus_from_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/inflate_denoiser_output.py from 664 to 775 changing mode of build/scripts-2.7/pick_otus_through_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_heatmap_html.py from 664 to 775 changing mode of build/scripts-2.7/summarize_taxa.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries_fastq.py from 664 to 775 changing mode of build/scripts-2.7/assign_taxonomy.py from 664 to 775 changing mode of build/scripts-2.7/make_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/plot_semivariogram.py from 664 to 775 changing mode of build/scripts-2.7/filter_fasta.py from 664 to 775 changing mode of build/scripts-2.7/shared_phylotypes.py from 664 to 775 changing mode of build/scripts-2.7/summarize_otu_by_cat.py from 664 to 775 changing mode of build/scripts-2.7/jackknifed_beta_diversity.py from 664 to 775 changing mode of build/scripts-2.7/compare_3d_plots.py from 664 to 775 changing mode of build/scripts-2.7/merge_otu_maps.py from 664 to 775 changing mode of build/scripts-2.7/make_distance_boxplots.py from 664 to 775 changing mode of build/scripts-2.7/parallel_pick_otus_uclust_ref.py from 664 to 775 changing mode of build/scripts-2.7/distance_matrix_from_mapping.py from 664 to 775 changing mode of build/scripts-2.7/multiple_rarefactions.py from 664 to 775 changing mode of build/scripts-2.7/parallel_align_seqs_pynast.py from 664 to 775 changing mode of build/scripts-2.7/split_libraries.py from 664 to 775 changing mode of build/scripts-2.7/exclude_seqs_by_blast.py from 664 to 775 changing mode of build/scripts-2.7/plot_rank_abundance_graph.py from 664 to 775 changing mode of build/scripts-2.7/convert_fastaqual_to_fastq.py from 664 to 775 changing mode of build/scripts-2.7/make_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/alpha_diversity.py from 664 to 775 changing mode of build/scripts-2.7/plot_taxa_summary.py from 664 to 775 changing mode of build/scripts-2.7/quality_scores_plot.py from 664 to 775 changing mode of build/scripts-2.7/filter_alignment.py from 664 to 775 changing mode of build/scripts-2.7/make_qiime_rst_file.py from 664 to 775 changing mode of build/scripts-2.7/fix_arb_fasta.py from 664 to 775 changing mode of build/scripts-2.7/split_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/categorized_dist_scatterplot.py from 664 to 775 changing mode of build/scripts-2.7/filter_distance_matrix.py from 664 to 775 changing mode of build/scripts-2.7/validate_demultiplexed_fasta.py from 664 to 775 changing mode of build/scripts-2.7/poller.py from 664 to 775 changing mode of build/scripts-2.7/simsam.py from 664 to 775 changing mode of build/scripts-2.7/identify_chimeric_seqs.py from 664 to 775 changing mode of build/scripts-2.7/upgma_cluster.py from 664 to 775 changing mode of build/scripts-2.7/principal_coordinates.py from 664 to 775 changing mode of build/scripts-2.7/sort_otu_table.py from 664 to 775 changing mode of build/scripts-2.7/make_library_id_lists.py from 664 to 775 changing mode of build/scripts-2.7/add_taxa.py from 664 to 775 changing mode of build/scripts-2.7/compare_distance_matrices.py from 664 to 775 make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/doc' sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.1.3 loading pickled environment... not yet created building [html]: targets for 173 source files that are out of date updating environment: 173 added, 0 changed, 0 removed reading sources... [ 0%] developer/coding_guidelines reading sources... [ 1%] developer/index reading sources... [ 1%] developer/reporting_and_fixing_bugs reading sources... [ 2%] documentation/biom_format reading sources... [ 2%] documentation/file_formats reading sources... [ 3%] documentation/index reading sources... [ 4%] documentation/script_index reading sources... [ 4%] documentation/table_objects reading sources... [ 5%] index reading sources... [ 5%] install/index reading sources... [ 6%] install/install reading sources... [ 6%] install/qiime_config reading sources... [ 7%] install/ubuntu_install reading sources... [ 8%] install/upgrade reading sources... [ 8%] install/virtual_box reading sources... [ 9%] install/vm_ec2 reading sources... [ 9%] scripts/add_qiime_labels reading sources... 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[ 69%] tutorials/../images/heatmap.png copying images... [ 72%] tutorials/../images/rarecurve.png copying images... [ 75%] tutorials/../images/configure_ebs_volume_attachment.png copying images... [ 78%] tutorials/../images/stop_instance.png copying images... [ 81%] tutorials/../images/mantel_correlogram.png copying images... [ 84%] tutorials/../images/fisheyeheatmap.png copying images... [ 87%] tutorials/../images/cyberduck_drag_and_drop_input_file.png copying images... [ 90%] tutorials/../images/cyberduck_create_output_file.png copying images... [ 93%] tutorials/../images/hist.png copying images... [ 96%] tutorials/../images/boottree.png copying images... [100%] tutorials/../images/UPGMAbytreatment.png copying static files... done dumping search index... done dumping object inventory... done build succeeded, 8 warnings. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/doc' Local documentation built with Sphinx. Open to following path with a web browser: /build/buildd/qiime-1.5.0+repack/doc/_build/html/index.html dh_auto_test /usr/bin/fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep dh_installdirs dh_auto_install make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' cp FlowgramAli_4frame ../bin/ make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/qiime/support_files/denoiser/FlowgramAlignment' Denoiser built. running install running build running build_py running build_scripts running install_lib creating /build/buildd/qiime-1.5.0+repack/debian/tmp creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7 creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/process_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/conditional_uncovered_probability.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/pick_rep_set.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_phylogeny.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/truncate_fasta_qual_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_2d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/hierarchical_cluster.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/pick_subsampled_reference_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/usearch.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/pplacer.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/muscle.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/rdp_classifier.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/uclust.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/guppy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/parsinsert.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/mothur.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/rtax.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/raxml_v730.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/pycogent_backports/distribution_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/pycogent_backports copying build/lib.linux-i686-2.7/qiime/cluster_quality.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/insert_seqs_into_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_otu_network.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/beta_metrics.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/otu_category_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/format.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/submit_to_mgrast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/filter.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/adjust_seq_orientation.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/align_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/nmds.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_rarefaction_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_otu_heatmap.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/filter_otus_by_sample.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/sort.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/colors.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_distance_histograms.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/rarefaction.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/util.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/trim_sff_primers.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_per_library_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/transform_coordinate_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/merge_mapping_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/truncate_reverse_primer.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/collate_alpha.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/split.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_bootstrapped_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/check_id_map.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/supervised_learning.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/clean_raxml_parsimony_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/assign_taxonomy_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/assign_taxonomy_rdp.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/pick_otus_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/util.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/align_seqs_pynast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/multiple_rarefactions.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/pick_otus_uclust_ref.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/poller.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/parallel/identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/parallel copying build/lib.linux-i686-2.7/qiime/compare_alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/tree_compare.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/pick_otus.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/denoise_wrapper.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/add_qiime_labels.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_otu_heatmap_html.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/summarize_taxa.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/split_libraries_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/assign_taxonomy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_3d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/plot_semivariogram.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/utils.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/preprocess.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/flowgram_clustering.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/make_cluster_jobs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/denoise_worker.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/cluster_utils.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/flowgram_filter.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/denoiser/denoise_postprocess.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/denoiser copying build/lib.linux-i686-2.7/qiime/shared_phylotypes.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/parse.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/hamming.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/__init__.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/group.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/distance_matrix_from_mapping.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/quality.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/test.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/longitudinal_otu_category_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/biplots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/split_libraries.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/exclude_seqs_by_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/stats.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/plot_rank_abundance_graph.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/convert_fastaqual_to_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/plot_taxa_summary.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/barcode.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/quality_scores_plot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/filter_alignment.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/workflow.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/categorized_dist_scatterplot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/golay.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/validate_demultiplexed_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/simsam.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/adonis.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/randomforests_util.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/randomforests.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/betadisper.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/rda.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/morans_i.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/loaddata.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/util.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R copying build/lib.linux-i686-2.7/qiime/support_files/R/mrpp.r -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/R creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/jar copying build/lib.linux-i686-2.7/qiime/support_files/jar/king.jar -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/jar creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/css copying build/lib.linux-i686-2.7/qiime/support_files/css/qiime_style.css -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/css copying build/lib.linux-i686-2.7/qiime/support_files/qiime_config -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData/test_set_seqs.fna -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData/test_flow_file.dat -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData/denoiser_test_set.sff.txt -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/TestData/tiny_test.sff.txt -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/TestData creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data/probabilities.txt -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data/Titanium_error_profile.dat -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data copying build/lib.linux-i686-2.7/qiime/support_files/denoiser/Data/FLX_error_profile.dat -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/denoiser/Data creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-i686-2.7/qiime/support_files/js/otu_count_display.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-i686-2.7/qiime/support_files/js/jquery.tablednd_0_5.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-i686-2.7/qiime/support_files/js/histograms.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-i686-2.7/qiime/support_files/js/overlib.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js copying build/lib.linux-i686-2.7/qiime/support_files/js/jquery.js -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/js creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/images copying build/lib.linux-i686-2.7/qiime/support_files/images/qiime_header.png -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime/support_files/images copying build/lib.linux-i686-2.7/qiime/principal_coordinates.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/relatedness_library.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/make_library_id_lists.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime copying build/lib.linux-i686-2.7/qiime/compare_distance_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/qiime running install_scripts creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/process_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/extract_seqs_by_sample_id.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/conditional_uncovered_probability.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_rep_set.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_phylogeny.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/unweight_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_assign_taxonomy_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoiser_worker.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/neighbor_joining.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/truncate_fasta_qual_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_tep.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_prefs_file.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_categories.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_2d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/consensus_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_qiime_py_file.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/ampliconnoise.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_samples_from_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/process_iseq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/dissimilarity_mtx_stats.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_subsampled_reference_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_otu_table_by_taxonomy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/subsample_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/cluster_quality.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/insert_seqs_into_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_comparison_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_network.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/poller_example.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/process_qseq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/otu_category_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/blast_wrapper.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/submit_to_mgrast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/count_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/adjust_seq_orientation.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs_sc.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/summarize_taxa_through_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/single_rarefaction.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/align_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/nmds.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/print_qiime_config.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoiser_preprocess.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_rarefaction_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_heatmap.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/core_qiime_analyses.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_otus_by_sample.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_reference_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_histograms.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/identify_missing_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/trim_sff_primers.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_per_library_sff.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/transform_coordinate_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/merge_mapping_files.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/per_library_stats.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/truncate_reverse_primer.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/convert_otu_table_to_unifrac_sample_mapping.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/alpha_rarefaction.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/start_parallel_jobs_torque.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/collate_alpha.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_assign_taxonomy_rdp.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_multiple_rarefactions.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_bootstrapped_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/check_id_map.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/convert_unifrac_sample_mapping_to_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/supervised_learning.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/clean_raxml_parsimony_tree.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/trflp_file_to_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/merge_otu_tables.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/tree_compare.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_otus.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/multiple_rarefactions_even_depth.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/relatedness.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/beta_diversity_through_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoiser.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/denoise_wrapper.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_fasta_on_sample_ids.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_pick_otus_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/add_qiime_labels.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/beta_significance.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_otus_from_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/inflate_denoiser_output.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/pick_otus_through_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_heatmap_html.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/summarize_taxa.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/assign_taxonomy.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_3d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/plot_semivariogram.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/shared_phylotypes.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/summarize_otu_by_cat.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/jackknifed_beta_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_3d_plots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/merge_otu_maps.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_distance_boxplots.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_pick_otus_uclust_ref.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/distance_matrix_from_mapping.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/multiple_rarefactions.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/parallel_align_seqs_pynast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_libraries.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/exclude_seqs_by_blast.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/ec2Clean -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/plot_rank_abundance_graph.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/convert_fastaqual_to_fastq.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/alpha_diversity.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/ec2Dispatch -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/plot_taxa_summary.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/quality_scores_plot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_alignment.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_qiime_rst_file.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/fix_arb_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/split_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/categorized_dist_scatterplot.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/filter_distance_matrix.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/validate_demultiplexed_fasta.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/poller.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/simsam.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/identify_chimeric_seqs.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/upgma_cluster.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/principal_coordinates.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/sort_otu_table.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/make_library_id_lists.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/add_taxa.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin copying build/scripts-2.7/compare_distance_matrices.py -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/process_sff.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/extract_seqs_by_sample_id.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/conditional_uncovered_probability.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_rep_set.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_phylogeny.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/unweight_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_assign_taxonomy_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoiser_worker.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/neighbor_joining.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/truncate_fasta_qual_files.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_tep.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/start_parallel_jobs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_prefs_file.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_categories.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_2d_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/consensus_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_qiime_py_file.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/ampliconnoise.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_samples_from_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/process_iseq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/dissimilarity_mtx_stats.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_subsampled_reference_otus_through_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_otu_table_by_taxonomy.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/subsample_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_beta_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/cluster_quality.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/insert_seqs_into_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_distance_comparison_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_network.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/poller_example.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/process_qseq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/otu_category_significance.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/blast_wrapper.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/submit_to_mgrast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/count_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/beta_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/adjust_seq_orientation.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/start_parallel_jobs_sc.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/summarize_taxa_through_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/single_rarefaction.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/align_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/nmds.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/print_qiime_config.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoiser_preprocess.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_rarefaction_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_heatmap.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/core_qiime_analyses.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_otus_by_sample.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_reference_otus_through_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_identify_chimeric_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_distance_histograms.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/identify_missing_files.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/trim_sff_primers.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_per_library_sff.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/transform_coordinate_matrices.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/merge_mapping_files.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/per_library_stats.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/truncate_reverse_primer.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/convert_otu_table_to_unifrac_sample_mapping.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/alpha_rarefaction.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/start_parallel_jobs_torque.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/collate_alpha.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_assign_taxonomy_rdp.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_multiple_rarefactions.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_bootstrapped_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/check_id_map.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/convert_unifrac_sample_mapping_to_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/supervised_learning.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/clean_raxml_parsimony_tree.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/trflp_file_to_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/merge_otu_tables.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_alpha_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/tree_compare.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_otus.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_alpha_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/multiple_rarefactions_even_depth.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/relatedness.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/beta_diversity_through_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoiser.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/denoise_wrapper.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_fasta_on_sample_ids.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_fastq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_pick_otus_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/add_qiime_labels.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/beta_significance.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_otus_from_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/inflate_denoiser_output.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/pick_otus_through_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_heatmap_html.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/summarize_taxa.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_libraries_fastq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/assign_taxonomy.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_3d_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/plot_semivariogram.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/shared_phylotypes.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/summarize_otu_by_cat.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/jackknifed_beta_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_3d_plots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/merge_otu_maps.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_distance_boxplots.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_pick_otus_uclust_ref.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/distance_matrix_from_mapping.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/multiple_rarefactions.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/parallel_align_seqs_pynast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_libraries.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/exclude_seqs_by_blast.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/ec2Clean to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/plot_rank_abundance_graph.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/convert_fastaqual_to_fastq.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/alpha_diversity.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/ec2Dispatch to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/plot_taxa_summary.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/quality_scores_plot.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_alignment.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_qiime_rst_file.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/fix_arb_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/split_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/categorized_dist_scatterplot.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/filter_distance_matrix.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/validate_demultiplexed_fasta.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/poller.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/simsam.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/identify_chimeric_seqs.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/upgma_cluster.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/principal_coordinates.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/sort_otu_table.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/make_library_id_lists.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/add_taxa.py to 775 changing mode of /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/bin/compare_distance_matrices.py to 775 running install_data creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files/denoiser creating /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files/denoiser/bin copying qiime/support_files/denoiser/bin/FlowgramAli_4frame -> /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/qiime/support_files/denoiser/bin/ running install_egg_info Writing /build/buildd/qiime-1.5.0+repack/debian/tmp/usr/lib/python2.7/dist-packages/QIIME-1.5.0.egg-info make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.1.3 loading pickled environment... done building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. Build finished. The HTML pages are in _build/html. make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack/doc' Local documentation built with Sphinx. Open to following path with a web browser: /build/buildd/qiime-1.5.0+repack/doc/_build/html/index.html debian/rules override_dh_install make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' dh_install chmod a+x debian/qiime/usr/lib/qiime/bin/uclust || true chmod -R a+rX debian/qiime/usr/lib/qiime/shell || true chmod a-x debian/qiime/usr/share/qiime/support_files/R/* || true chmod a-x debian/qiime/usr/share/qiime/support_files/js/* || true #Fix lintian warning for jquery rm debian/qiime/usr/share/qiime/support_files/js/jquery.js && \ ln -s /usr/share/javascript/jquery/jquery.js debian/qiime/usr/share/qiime/support_files/js #Make some symlinks as Qiime assumes a single dir structure for path in denoiser/Data css images R js ; do \ dh_link -pqiime /usr/share/qiime/support_files/"$path" /usr/lib/qiime/support_files/"$path" ;\ done make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' dh_installchangelogs ChangeLog make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_python2 dh_usrlocal dh_link debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/qiime-1.5.0+repack' dh_compress \ --exclude=.js \ --exclude=.sff \ --exclude=.qual \ --exclude=.fna \ --exclude=.fna.txt make[1]: Leaving directory `/build/buildd/qiime-1.5.0+repack' dh_fixperms dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: warning: 'debian/qiime/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `qiime' in `../qiime_1.5.0+repack-2ubuntu4_i386.deb'. INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `qiime-doc' in `../qiime-doc_1.5.0+repack-2ubuntu4_all.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../qiime_1.5.0+repack-2ubuntu4_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build qiime-1.5.0+repack dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120814-2219 chroot-autobuild/build/buildd/qiime_1.5.0+repack-2ubuntu4_i386.deb: new debian package, version 2.0. size 1043870 bytes: control archive= 9927 bytes. 24 bytes, 1 lines conffiles 2499 bytes, 49 lines control 21913 bytes, 280 lines md5sums 243 bytes, 13 lines * postinst #!/bin/sh 247 bytes, 14 lines * prerm #!/bin/sh Package: qiime Version: 1.5.0+repack-2ubuntu4 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 4061 Depends: libc6 (>= 2.15), libffi6 (>= 3.0.4), libgmp10, python2.7, python (>= 2.7.1-0ubuntu2), python (<< 2.8), python-pynast (>= 1.1) | pynast (>= 1.1), python-cogent (>= 1.5.1), king, python-biom-format Recommends: blast2 | blast+-legacy, cd-hit, rdp-classifier, chimeraslayer, muscle, infernal, fasttree, ampliconnoise, python-matplotlib, python-numpy, libjs-jquery Suggests: t-coffee, cytoscape Conflicts: denoiser Replaces: denoiser Provides: denoiser Section: science Priority: extra Homepage: http://www.qiime.org/ Description: Quantitative Insights Into Microbial Ecology QIIME (canonically pronounced ‘Chime’) is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field. A standard QIIME analysis begins with sequence data from one or more sequencing platforms, including * Sanger, * Roche/454, and * Illumina GAIIx. With all the underlying tools installed, of which not all are yet available in Debian (or any other Linux distribution), QIIME can perform * library de-multiplexing and quality filtering; * denoising with PyroNoise; * OTU and representative set picking with uclust, cdhit, mothur, BLAST, or other tools; * taxonomy assignment with BLAST or the RDP classifier; * sequence alignment with PyNAST, muscle, infernal, or other tools; * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools; * alpha diversity and rarefaction, including visualization of results, using over 20 metrics including Phylogenetic Diversity, chao1, and observed species; * beta diversity and rarefaction, including visualization of results, using over 25 metrics including weighted and unweighted UniFrac, Euclidean distance, and Bray-Curtis; * summarization and visualization of taxonomic composition of samples using pie charts and histograms and many other features. . QIIME includes parallelization capabilities for many of the computationally intensive steps. By default, these are configured to utilize a mutli-core environment, and are easily configured to run in a cluster environment. QIIME is built in Python using the open-source PyCogent toolkit. It makes extensive use of unit tests, and is highly modular to facilitate custom analyses. Python-Version: 2.7 chroot-autobuild/build/buildd/qiime-doc_1.5.0+repack-2ubuntu4_all.deb: new debian package, version 2.0. size 7213092 bytes: control archive= 18976 bytes. 2147 bytes, 46 lines control 58743 bytes, 608 lines md5sums Package: qiime-doc Source: qiime Version: 1.5.0+repack-2ubuntu4 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 18771 Depends: libjs-jquery, libjs-underscore Section: doc Priority: extra Homepage: http://www.qiime.org/ Description: Quantitative Insights Into Microbial Ecology (tutorial) QIIME (canonically pronounced ‘Chime’) is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field. A standard QIIME analysis begins with sequence data from one or more sequencing platforms, including * Sanger, * Roche/454, and * Illumina GAIIx. With all the underlying tools installed, of which not all are yet available in Debian (or any other Linux distribution), QIIME can perform * library de-multiplexing and quality filtering; * denoising with PyroNoise; * OTU and representative set picking with uclust, cdhit, mothur, BLAST, or other tools; * taxonomy assignment with BLAST or the RDP classifier; * sequence alignment with PyNAST, muscle, infernal, or other tools; * phylogeny reconstruction with FastTree, raxml, clearcut, or other tools; * alpha diversity and rarefaction, including visualization of results, using over 20 metrics including Phylogenetic Diversity, chao1, and observed species; * beta diversity and rarefaction, including visualization of results, using over 25 metrics including weighted and unweighted UniFrac, Euclidean distance, and Bray-Curtis; * summarization and visualization of taxonomic composition of samples using pie charts and histograms and many other features. . QIIME includes parallelization capabilities for many of the computationally intensive steps. By default, these are configured to utilize a mutli-core environment, and are easily configured to run in a cluster environment. QIIME is built in Python using the open-source PyCogent toolkit. It makes extensive use of unit tests, and is highly modular to facilitate custom analyses. . This package contains the documentation and a tutorial. chroot-autobuild/build/buildd/qiime_1.5.0+repack-2ubuntu4_i386.deb: drwxr-xr-x root/root 0 2012-08-14 22:19 ./ drwxr-xr-x root/root 0 2012-08-14 22:19 ./etc/ drwxr-xr-x root/root 0 2012-08-14 22:19 ./etc/qiime/ -rw-r--r-- root/root 498 2012-08-10 13:40 ./etc/qiime/qiime_config drwxr-xr-x root/root 0 2012-08-14 22:19 ./usr/ drwxr-xr-x root/root 0 2012-08-14 22:19 ./usr/bin/ -rwxr-xr-x root/root 1266 2012-08-10 13:40 ./usr/bin/qiime drwxr-xr-x root/root 0 2012-08-14 22:19 ./usr/lib/ drwxr-xr-x root/root 0 2012-08-14 22:19 ./usr/lib/qiime/ drwxr-xr-x root/root 0 2012-08-14 22:19 ./usr/lib/qiime/bin/ -rwxr-xr-x root/root 3316 2012-08-14 22:18 ./usr/lib/qiime/bin/process_sff.py -rwxr-xr-x root/root 4577 2012-08-14 22:18 ./usr/lib/qiime/bin/extract_seqs_by_sample_id.py -rwxr-xr-x root/root 5791 2012-08-14 22:18 ./usr/lib/qiime/bin/conditional_uncovered_probability.py -rwxr-xr-x root/root 6261 2012-08-14 22:18 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-rw-r--r-- root/root 1337 2012-05-09 05:50 ./usr/share/pyshared/qiime/make_library_id_lists.py -rwxr-xr-x root/root 10898 2012-05-09 05:50 ./usr/share/pyshared/qiime/compare_distance_matrices.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/bin/denoiser -> qiime lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/qiime/support_files/R -> ../../../share/qiime/support_files/R lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/qiime/support_files/jar/king.jar -> ../../../../share/java/king.jar lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/qiime/support_files/css -> ../../../share/qiime/support_files/css lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/qiime/support_files/denoiser/Data -> ../../../../share/qiime/support_files/denoiser/Data lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/qiime/support_files/js -> ../../../share/qiime/support_files/js lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/qiime/support_files/images -> ../../../share/qiime/support_files/images lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/process_sff.py -> ../../../../share/pyshared/qiime/process_sff.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/conditional_uncovered_probability.py -> ../../../../share/pyshared/qiime/conditional_uncovered_probability.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pick_rep_set.py -> ../../../../share/pyshared/qiime/pick_rep_set.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_phylogeny.py -> ../../../../share/pyshared/qiime/make_phylogeny.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/truncate_fasta_qual_files.py -> ../../../../share/pyshared/qiime/truncate_fasta_qual_files.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_2d_plots.py -> ../../../../share/pyshared/qiime/make_2d_plots.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/hierarchical_cluster.py -> ../../../../share/pyshared/qiime/hierarchical_cluster.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pick_subsampled_reference_otus_through_otu_table.py -> ../../../../share/pyshared/qiime/pick_subsampled_reference_otus_through_otu_table.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/usearch.py -> ../../../../../share/pyshared/qiime/pycogent_backports/usearch.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/pplacer.py -> ../../../../../share/pyshared/qiime/pycogent_backports/pplacer.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/muscle.py -> ../../../../../share/pyshared/qiime/pycogent_backports/muscle.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/rdp_classifier.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rdp_classifier.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/uclust.py -> ../../../../../share/pyshared/qiime/pycogent_backports/uclust.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/guppy.py -> ../../../../../share/pyshared/qiime/pycogent_backports/guppy.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/parsinsert.py -> ../../../../../share/pyshared/qiime/pycogent_backports/parsinsert.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/mothur.py -> ../../../../../share/pyshared/qiime/pycogent_backports/mothur.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/tree.py -> ../../../../../share/pyshared/qiime/pycogent_backports/tree.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/__init__.py -> ../../../../../share/pyshared/qiime/pycogent_backports/__init__.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/rtax.py -> ../../../../../share/pyshared/qiime/pycogent_backports/rtax.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/raxml_v730.py -> ../../../../../share/pyshared/qiime/pycogent_backports/raxml_v730.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pycogent_backports/distribution_plots.py -> ../../../../../share/pyshared/qiime/pycogent_backports/distribution_plots.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/cluster_quality.py -> ../../../../share/pyshared/qiime/cluster_quality.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/insert_seqs_into_tree.py -> ../../../../share/pyshared/qiime/insert_seqs_into_tree.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_otu_network.py -> ../../../../share/pyshared/qiime/make_otu_network.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/beta_metrics.py -> ../../../../share/pyshared/qiime/beta_metrics.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/otu_category_significance.py -> ../../../../share/pyshared/qiime/otu_category_significance.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/format.py -> ../../../../share/pyshared/qiime/format.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/submit_to_mgrast.py -> ../../../../share/pyshared/qiime/submit_to_mgrast.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/filter.py -> ../../../../share/pyshared/qiime/filter.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/beta_diversity.py -> ../../../../share/pyshared/qiime/beta_diversity.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/adjust_seq_orientation.py -> ../../../../share/pyshared/qiime/adjust_seq_orientation.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/align_seqs.py -> ../../../../share/pyshared/qiime/align_seqs.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/nmds.py -> ../../../../share/pyshared/qiime/nmds.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_rarefaction_plots.py -> ../../../../share/pyshared/qiime/make_rarefaction_plots.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_otu_heatmap.py -> ../../../../share/pyshared/qiime/make_otu_heatmap.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/filter_otus_by_sample.py -> ../../../../share/pyshared/qiime/filter_otus_by_sample.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/sort.py -> ../../../../share/pyshared/qiime/sort.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/colors.py -> ../../../../share/pyshared/qiime/colors.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_distance_histograms.py -> ../../../../share/pyshared/qiime/make_distance_histograms.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/rarefaction.py -> ../../../../share/pyshared/qiime/rarefaction.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/util.py -> ../../../../share/pyshared/qiime/util.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/trim_sff_primers.py -> ../../../../share/pyshared/qiime/trim_sff_primers.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_per_library_sff.py -> ../../../../share/pyshared/qiime/make_per_library_sff.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/transform_coordinate_matrices.py -> ../../../../share/pyshared/qiime/transform_coordinate_matrices.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/merge_mapping_files.py -> ../../../../share/pyshared/qiime/merge_mapping_files.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/truncate_reverse_primer.py -> ../../../../share/pyshared/qiime/truncate_reverse_primer.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/collate_alpha.py -> ../../../../share/pyshared/qiime/collate_alpha.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/split.py -> ../../../../share/pyshared/qiime/split.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_bootstrapped_tree.py -> ../../../../share/pyshared/qiime/make_bootstrapped_tree.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/check_id_map.py -> ../../../../share/pyshared/qiime/check_id_map.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/supervised_learning.py -> ../../../../share/pyshared/qiime/supervised_learning.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/clean_raxml_parsimony_tree.py -> ../../../../share/pyshared/qiime/clean_raxml_parsimony_tree.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/assign_taxonomy_blast.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_blast.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/assign_taxonomy_rdp.py -> ../../../../../share/pyshared/qiime/parallel/assign_taxonomy_rdp.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/pick_otus_blast.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_blast.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/beta_diversity.py -> ../../../../../share/pyshared/qiime/parallel/beta_diversity.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/util.py -> ../../../../../share/pyshared/qiime/parallel/util.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/blast.py -> ../../../../../share/pyshared/qiime/parallel/blast.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/align_seqs_pynast.py -> ../../../../../share/pyshared/qiime/parallel/align_seqs_pynast.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/__init__.py -> ../../../../../share/pyshared/qiime/parallel/__init__.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/multiple_rarefactions.py -> ../../../../../share/pyshared/qiime/parallel/multiple_rarefactions.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/alpha_diversity.py -> ../../../../../share/pyshared/qiime/parallel/alpha_diversity.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/pick_otus_uclust_ref.py -> ../../../../../share/pyshared/qiime/parallel/pick_otus_uclust_ref.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/poller.py -> ../../../../../share/pyshared/qiime/parallel/poller.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parallel/identify_chimeric_seqs.py -> ../../../../../share/pyshared/qiime/parallel/identify_chimeric_seqs.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/compare_alpha_diversity.py -> ../../../../share/pyshared/qiime/compare_alpha_diversity.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/tree_compare.py -> ../../../../share/pyshared/qiime/tree_compare.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/pick_otus.py -> ../../../../share/pyshared/qiime/pick_otus.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoise_wrapper.py -> ../../../../share/pyshared/qiime/denoise_wrapper.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_fastq.py -> ../../../../share/pyshared/qiime/make_fastq.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/add_qiime_labels.py -> ../../../../share/pyshared/qiime/add_qiime_labels.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_otu_heatmap_html.py -> ../../../../share/pyshared/qiime/make_otu_heatmap_html.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/summarize_taxa.py -> ../../../../share/pyshared/qiime/summarize_taxa.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/split_libraries_fastq.py -> ../../../../share/pyshared/qiime/split_libraries_fastq.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/assign_taxonomy.py -> ../../../../share/pyshared/qiime/assign_taxonomy.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/make_3d_plots.py -> ../../../../share/pyshared/qiime/make_3d_plots.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/plot_semivariogram.py -> ../../../../share/pyshared/qiime/plot_semivariogram.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/utils.py -> ../../../../../share/pyshared/qiime/denoiser/utils.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/preprocess.py -> ../../../../../share/pyshared/qiime/denoiser/preprocess.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/flowgram_clustering.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_clustering.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/make_cluster_jobs.py -> ../../../../../share/pyshared/qiime/denoiser/make_cluster_jobs.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/denoise_worker.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_worker.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/cluster_utils.py -> ../../../../../share/pyshared/qiime/denoiser/cluster_utils.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/__init__.py -> ../../../../../share/pyshared/qiime/denoiser/__init__.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/flowgram_filter.py -> ../../../../../share/pyshared/qiime/denoiser/flowgram_filter.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/denoiser/denoise_postprocess.py -> ../../../../../share/pyshared/qiime/denoiser/denoise_postprocess.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/shared_phylotypes.py -> ../../../../share/pyshared/qiime/shared_phylotypes.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/parse.py -> ../../../../share/pyshared/qiime/parse.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/hamming.py -> ../../../../share/pyshared/qiime/hamming.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/__init__.py -> ../../../../share/pyshared/qiime/__init__.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/group.py -> ../../../../share/pyshared/qiime/group.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/distance_matrix_from_mapping.py -> ../../../../share/pyshared/qiime/distance_matrix_from_mapping.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/quality.py -> ../../../../share/pyshared/qiime/quality.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/test.py -> ../../../../share/pyshared/qiime/test.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/longitudinal_otu_category_significance.py -> ../../../../share/pyshared/qiime/longitudinal_otu_category_significance.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/biplots.py -> ../../../../share/pyshared/qiime/biplots.py lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/lib/python2.7/dist-packages/qiime/split_libraries.py -> 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14:23 ./usr/share/doc/qiime/vb_files/Before_you_start/1.Welcome.txt -rw-r--r-- root/root 1471 2010-11-16 23:20 ./usr/share/doc/qiime/vb_files/Before_you_start/4.Transferring_files_to_your_virtual_box.txt lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/share/doc/qiime/html/_static/underscore.js -> ../../../../javascript/underscore/underscore.js lrwxrwxrwx root/root 0 2012-08-14 22:19 ./usr/share/doc/qiime/html/_static/jquery.js -> ../../../../javascript/jquery/jquery.js qiime_1.5.0+repack-2ubuntu4_i386.changes: Format: 1.8 Date: Tue, 14 Aug 2012 17:53:13 +0100 Source: qiime Binary: qiime qiime-doc Architecture: i386 all Version: 1.5.0+repack-2ubuntu4 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Tim Booth Description: qiime - Quantitative Insights Into Microbial Ecology qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial) Changes: qiime (1.5.0+repack-2ubuntu4) precise; urgency=low . * Remove python26_trim_sff_primers.patch as Qiime now requires 2.7 anyway * Avoid calling dh_auto_clean at all as it triggers a partial rebuild * Added various support files in /usr/share/qiime/support_files * Added various symlinks as Qiime wants everything in one place * Set python-biom-format as a hard dependency because even built-in self-test won't start without it * Added patch to self-test where it looks for default config file * Modified to work with new RDP-classifier package Checksums-Sha1: cf4f93f63ef89d02d2b3752a10f5ccb71e0dbd19 1043870 qiime_1.5.0+repack-2ubuntu4_i386.deb e8b50ec8b619416e94c0f1679d43c4a0bf4c738e 7213092 qiime-doc_1.5.0+repack-2ubuntu4_all.deb Checksums-Sha256: 5b5c01206f6e37f73f9cd92f06dee5a0ee0392dfb127bda99d5ff0bdc8322f86 1043870 qiime_1.5.0+repack-2ubuntu4_i386.deb 190007b2e0eb66ae9616aef4bbf40283c4af25f666bce3a6ee359a48c1fa73e2 7213092 qiime-doc_1.5.0+repack-2ubuntu4_all.deb Files: ddf55888bf13a997ded14877f68de27c 1043870 science extra qiime_1.5.0+repack-2ubuntu4_i386.deb 0dce49828dab0a78aafd0d21214d2329 7213092 doc extra qiime-doc_1.5.0+repack-2ubuntu4_all.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120814-2219 Build needed 00:00:39, 99152k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '78d30c5a27ec86ece0b237cdc8e89671aa083efd'] Scanning for processes to kill in build /home/buildd/build-78d30c5a27ec86ece0b237cdc8e89671aa083efd/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '78d30c5a27ec86ece0b237cdc8e89671aa083efd'] Unmounting chroot for build 78d30c5a27ec86ece0b237cdc8e89671aa083efd... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '78d30c5a27ec86ece0b237cdc8e89671aa083efd'] Removing build 78d30c5a27ec86ece0b237cdc8e89671aa083efd