RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-31-xen #1 SMP Fri Apr 27 22:22:26 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 18 Oct 05:34:20 ntpdate[3413]: step time server 10.211.37.1 offset -5467238.952324 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'b9742a1fb6769ae622a751e52d763522d993abaf', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build b9742a1fb6769ae622a751e52d763522d993abaf RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'b9742a1fb6769ae622a751e52d763522d993abaf'] Mounting chroot for build b9742a1fb6769ae622a751e52d763522d993abaf RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'b9742a1fb6769ae622a751e52d763522d993abaf', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-b9742a1fb6769ae622a751e52d763522d993abaf RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'b9742a1fb6769ae622a751e52d763522d993abaf', 'i386'] Updating debian chroot for build b9742a1fb6769ae622a751e52d763522d993abaf Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Get:5 http://ftpmaster.internal precise-security Release [49.6 kB] Get:6 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:7 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Ign http://ppa.launchpad.net precise InRelease Get:8 http://ppa.launchpad.net precise Release.gpg [316 B] Get:9 http://ppa.launchpad.net precise Release [11.9 kB] Get:10 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:11 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Ign http://ppa.launchpad.net precise Release Get:12 http://ppa.launchpad.net precise/main i386 Packages [7518 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [160 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [39.4 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [1399 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [374 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [123 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [2536 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [73.8 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [587 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [24.4 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [179 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [1600 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [73.1 kB] Fetched 11.6 MB in 7s (1472 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils udev upstart 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After this operation, 37.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.7 MB in 1s (15.4 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'b9742a1fb6769ae622a751e52d763522d993abaf', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'ncbi-blast+_2.2.26-3ubuntu1.dsc'] Initiating build b9742a1fb6769ae622a751e52d763522d993abaf with 2 jobs across 2 processor cores. Automatic build of ncbi-blast+_2.2.26-3ubuntu1 on muntries by sbuild/i386 1.170.5 Build started at 20120815-2256 ****************************************************************************** ncbi-blast+_2.2.26-3ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: autotools-dev (>= 20100122), debhelper (>= 7.0.50~), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libc0.3-dev (>= 2.13-9~) [hurd-i386], libpcre3-dev, quilt (>= 0.46-7~), time, zlib1g-dev Checking for already installed source dependencies... autotools-dev: missing debhelper: missing dpkg-dev: already installed (1.16.1.2ubuntu7 >= 1.16.1 is satisfied) libboost-test-dev: missing libbz2-dev: missing libpcre3-dev: missing quilt: missing time: missing zlib1g-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install autotools-dev debhelper libboost-test-dev libbz2-dev libpcre3-dev quilt time zlib1g-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor diffstat file gettext gettext-base groff-base html2text intltool-debian libboost-test1.46-dev libboost-test1.46.1 libboost1.46-dev libcroco3 libgettextpo0 libmagic1 libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libboost1.46-doc libboost-date-time1.46-dev libboost-filesystem1.46-dev libboost-graph1.46-dev libboost-iostreams1.46-dev libboost-math1.46-dev libboost-program-options1.46-dev libboost-python1.46-dev libboost-random1.46-dev libboost-regex1.46-dev libboost-serialization1.46-dev libboost-signals1.46-dev libboost-system1.46-dev libboost-thread1.46-dev libboost-wave1.46-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-apparmor diffstat file gettext gettext-base groff-base html2text intltool-debian libboost-test-dev libboost-test1.46-dev libboost-test1.46.1 libboost1.46-dev libbz2-dev libcroco3 libgettextpo0 libmagic1 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt time zlib1g-dev 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After this operation, 81.5 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libpcrecpp0 libmagic1 file bsdmainutils gettext-base groff-base man-db time autotools-dev html2text gettext intltool-debian po-debconf dh-apparmor debhelper diffstat libboost1.46-dev libboost-test1.46.1 libboost-test1.46-dev libboost-test-dev libbz2-dev libpcre3-dev quilt zlib1g-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libpcrecpp0 i386 8.12-4 [16.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main time i386 1.7-23.1 [29.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:20 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main diffstat i386 1.54-1 [21.3 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libboost1.46-dev i386 1.46.1-7ubuntu3 [7641 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libboost-test1.46.1 i386 1.46.1-7ubuntu3 [222 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libboost-test1.46-dev i386 1.46.1-7ubuntu3 [568 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libboost-test-dev i386 1.48.0.2 [2746 B] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libbz2-dev i386 1.0.6-1 [31.4 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libpcre3-dev i386 8.12-4 [226 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main quilt all 0.50-2 [287 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.9 MB in 1s (14.6 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 12283 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libpcrecpp0. Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package time. Unpacking time (from .../time_1.7-23.1_i386.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. 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Unpacking libboost-test1.46-dev (from .../libboost-test1.46-dev_1.46.1-7ubuntu3_i386.deb) ... Selecting previously unselected package libboost-test-dev. Unpacking libboost-test-dev (from .../libboost-test-dev_1.48.0.2_i386.deb) ... Selecting previously unselected package libbz2-dev. Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_i386.deb) ... Selecting previously unselected package libpcre3-dev. Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_i386.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.50-2_all.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_i386.deb) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libpcrecpp0 (8.12-4) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up time (1.7-23.1) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package time should be updated. Setting up autotools-dev (20120210.1ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up diffstat (1.54-1) ... Setting up libboost1.46-dev (1.46.1-7ubuntu3) ... Setting up libboost-test1.46.1 (1.46.1-7ubuntu3) ... Setting up libboost-test1.46-dev (1.46.1-7ubuntu3) ... Setting up libboost-test-dev (1.48.0.2) ... Setting up libbz2-dev (1.0.6-1) ... Setting up libpcre3-dev (8.12-4) ... Setting up quilt (0.50-2) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Wed Aug 15 16:15:15 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.2.26-3ubuntu1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.2.26 dpkg-source: info: unpacking ncbi-blast+_2.2.26.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.2.26-3ubuntu1.debian.tar.gz dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying wrong_path_to_touch.patch dpkg-source: info: applying fix_gcc47_errors dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package ncbi-blast+ dpkg-buildpackage: source version 2.2.26-3ubuntu1 dpkg-source --before-build ncbi-blast+-2.2.26 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev --with quilt dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ dh_quilt_unpatch -O-Dc\+\+ Removing patch skip_services_unit_test Restoring c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app Removing patch use_pie_for_apps Restoring c++/src/build-system/Makefile.app.in Removing patch fix_gcc47_errors Restoring c++/src/serial/stdtypes.cpp Restoring c++/include/serial/impl/stltypes.hpp Restoring c++/include/serial/iterator.hpp Restoring c++/include/util/bitset/bmfunc.h Restoring c++/include/util/bitset/bmserial.h Restoring c++/include/util/linkedset.hpp Restoring c++/include/util/rangemap.hpp Restoring c++/include/connect/ncbi_conn_stream.hpp Restoring c++/include/corelib/ncbistl.hpp Restoring c++/include/corelib/ncbimisc.hpp Restoring c++/include/corelib/ncbistr.hpp Restoring c++/include/corelib/ncbiexpt.hpp Removing patch wrong_path_to_touch.patch Restoring c++/src/build-system/configure Restoring c++/src/build-system/Makefile.mk.in Restoring c++/src/build-system/Makefile.meta.in Restoring c++/src/build-system/NEWS Restoring c++/src/build-system/configure.ac Removing patch no_multiarch_rpath Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Removing patch fix_lib_deps Restoring c++/src/serial/Makefile.serial.lib Restoring c++/src/cgi/Makefile.cgi.lib Restoring c++/src/util/compress/api/Makefile.compress.lib Restoring c++/src/util/xregexp/Makefile.xregexp.lib Restoring c++/src/util/Makefile.util.lib Restoring c++/src/util/sequtil/Makefile.sequtil.lib Restoring c++/src/algo/dustmask/Makefile.xalgodustmask.lib Restoring c++/src/algo/blast/format/Makefile.xblastformat.lib Restoring c++/src/algo/blast/core/Makefile.blast.lib Restoring c++/src/algo/blast/api/Makefile.xblast.lib Restoring c++/src/algo/blast/Makefile.blast_macros.mk Restoring c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib Restoring c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Restoring c++/src/algo/blast/blastinput/Makefile.blastinput.lib Restoring c++/src/algo/winmask/Makefile.xalgowinmask.lib Restoring c++/src/algo/segmask/Makefile.xalgosegmask.lib Restoring c++/src/objects/general/Makefile.general.lib Restoring c++/src/objects/seqcode/Makefile.seqcode.lib Restoring c++/src/objects/pub/Makefile.pub.lib Restoring c++/src/objects/blastdb/Makefile.blastdb.lib Restoring c++/src/objects/id2/Makefile.id2.lib Restoring c++/src/objects/seq/Makefile.seq.lib Restoring c++/src/objects/blast/Makefile.blast.lib Restoring c++/src/objects/blast/Makefile.xnetblastcli.lib Restoring c++/src/objects/genomecoll/Makefile.genome_collection.lib Restoring c++/src/objects/scoremat/Makefile.scoremat.lib Restoring c++/src/objects/seqsplit/Makefile.seqsplit.lib Restoring c++/src/objects/entrez2/Makefile.entrez2cli.lib Restoring c++/src/objects/entrez2/Makefile.entrez2.lib Restoring c++/src/objects/seqedit/Makefile.seqedit.lib Restoring c++/src/objects/blastxml/Makefile.blastxml.lib Restoring c++/src/objects/seqset/Makefile.seqset.lib Restoring c++/src/objects/id1/Makefile.id1.lib Restoring c++/src/objects/biblio/Makefile.biblio.lib Restoring c++/src/objects/medline/Makefile.medline.lib Restoring c++/src/objects/submit/Makefile.submit.lib Restoring c++/src/connect/ext/Makefile.xconnext.lib Restoring c++/src/connect/Makefile.xconnect.lib Restoring c++/src/html/Makefile.html.lib Restoring c++/src/objmgr/util/Makefile.util.lib Restoring c++/src/objmgr/split/Makefile.id2_split.lib Restoring c++/src/objtools/simple/Makefile.xobjsimple.lib Restoring c++/src/objtools/alnmgr/Makefile.alnmgr.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib Restoring c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib Restoring c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib Restoring c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib Restoring c++/src/objtools/blast/services/Makefile.blast_services.lib Restoring c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib Restoring c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib Restoring c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib Restoring c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib Restoring c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib Restoring c++/src/objtools/align_format/Makefile.align_format.lib Restoring c++/src/objtools/readers/Makefile.xobjread.lib Restoring c++/src/corelib/Makefile.test_boost.lib Restoring c++/src/corelib/Makefile.test_mt.lib Removing patch legacy_rename_rpsblast Restoring c++/src/app/blast/legacy_blast.pl Removing patch hurd_fixes Restoring c++/src/connect/ncbi_socket_cxx.cpp Restoring c++/src/connect/ext/ncbi_localnet.c Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac No patches applied debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/ncbi-blast+-2.2.26' dh_clean for x in c++/src/objects/*/*.files; do \ (cd `dirname $x` && ../../../BUILD/build/new_module.sh \ `basename $x .files`.module purge_sources); \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in make[1]: [override_dh_clean] Error 2 (ignored) rm -rf c++/BUILD c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module make[1]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26' debian/rules build dh build -Dc++ --with autotools_dev --with quilt dh_testdir -O-Dc\+\+ dh_autotools-dev_updateconfig -O-Dc\+\+ dh_quilt_patch -O-Dc\+\+ Applying patch hurd_fixes patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac patching file c++/src/connect/ncbi_socket_cxx.cpp patching file c++/src/connect/ext/ncbi_localnet.c Applying patch legacy_rename_rpsblast patching file c++/src/app/blast/legacy_blast.pl Applying patch fix_lib_deps patching file c++/src/algo/blast/core/Makefile.blast.lib patching file c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib patching file c++/src/algo/blast/format/Makefile.xblastformat.lib patching file c++/src/algo/winmask/Makefile.xalgowinmask.lib patching file c++/src/cgi/Makefile.cgi.lib patching file c++/src/html/Makefile.html.lib patching file c++/src/objects/blast/Makefile.xnetblastcli.lib patching file c++/src/objtools/align_format/Makefile.align_format.lib patching file c++/src/objtools/alnmgr/Makefile.alnmgr.lib patching file c++/src/objtools/readers/Makefile.xobjread.lib patching file c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib patching file c++/src/objtools/simple/Makefile.xobjsimple.lib patching file c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib patching file c++/src/objtools/blast/gene_info_reader/Makefile.gene_info.lib patching file c++/src/algo/blast/api/Makefile.xblast.lib patching file c++/src/algo/blast/blastinput/Makefile.blastinput.lib patching file c++/src/algo/dustmask/Makefile.xalgodustmask.lib patching file c++/src/connect/Makefile.xconnect.lib patching file c++/src/connect/ext/Makefile.xconnext.lib patching file c++/src/objects/blast/Makefile.blast.lib patching file c++/src/objects/blastxml/Makefile.blastxml.lib patching file c++/src/objects/entrez2/Makefile.entrez2.lib patching file c++/src/objects/entrez2/Makefile.entrez2cli.lib patching file c++/src/objects/scoremat/Makefile.scoremat.lib patching file c++/src/objects/seqedit/Makefile.seqedit.lib patching file c++/src/objects/submit/Makefile.submit.lib patching file c++/src/objmgr/util/Makefile.util.lib patching file c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib patching file c++/src/objtools/blast/services/Makefile.blast_services.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib patching file c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib patching file c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib patching file c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib patching file c++/src/util/compress/api/Makefile.compress.lib patching file c++/src/util/sequtil/Makefile.sequtil.lib patching file c++/src/corelib/Makefile.test_boost.lib patching file c++/src/corelib/Makefile.test_mt.lib patching file c++/src/objects/biblio/Makefile.biblio.lib patching file c++/src/objects/blastdb/Makefile.blastdb.lib patching file c++/src/objects/general/Makefile.general.lib patching file c++/src/objects/genomecoll/Makefile.genome_collection.lib patching file c++/src/objects/id1/Makefile.id1.lib patching file c++/src/objects/id2/Makefile.id2.lib patching file c++/src/objects/medline/Makefile.medline.lib patching file c++/src/objects/pub/Makefile.pub.lib patching file c++/src/objects/seq/Makefile.seq.lib patching file c++/src/objects/seqcode/Makefile.seqcode.lib patching file c++/src/objects/seqset/Makefile.seqset.lib patching file c++/src/objects/seqsplit/Makefile.seqsplit.lib patching file c++/src/serial/Makefile.serial.lib patching file c++/src/util/Makefile.util.lib patching file c++/src/util/xregexp/Makefile.xregexp.lib patching file c++/src/algo/segmask/Makefile.xalgosegmask.lib patching file c++/src/objmgr/split/Makefile.id2_split.lib patching file c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib patching file c++/src/algo/blast/Makefile.blast_macros.mk patching file c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Applying patch no_multiarch_rpath patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac Applying patch wrong_path_to_touch.patch patching file c++/src/build-system/Makefile.meta.in patching file c++/src/build-system/Makefile.mk.in patching file c++/src/build-system/NEWS patching file c++/src/build-system/configure.ac patching file c++/src/build-system/configure Applying patch fix_gcc47_errors patching file c++/include/connect/ncbi_conn_stream.hpp patching file c++/include/corelib/ncbiexpt.hpp patching file c++/include/corelib/ncbimisc.hpp patching file c++/include/corelib/ncbistl.hpp patching file c++/include/corelib/ncbistr.hpp patching file c++/include/serial/impl/stltypes.hpp patching file c++/include/serial/iterator.hpp patching file 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/net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/Linux32/3.7.1/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include 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-Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:722:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/corelib/ncbidiag.hpp:1732) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1567:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1630:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1655:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:1687:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:824) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages)': /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbidiag.cpp:2527:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated (declared at 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ncbidll.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include 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-o ncbi_autoinit.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -shared -o libxncbi.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ldl -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxncbi.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxncbi.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxncbi.so ln -f .xncbi.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -shared -o libtest_mt.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtest_mt.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtest_mt.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libtest_mt.so ln -f .test_mt.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' 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sgml_entity.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector 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/usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/ncbi_url.cpp -o ncbi_url.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -shared -o libxutil.so -Wl,--enable-new-dtags 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make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' make[2]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' make[2]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[2]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' make[2]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC 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-I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O -Wl,-E file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -lrt -lm -lpthread -o project_tree_builder /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f project_tree_builder /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f project_tree_builder /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/buildd/ncbi-blast+-2.2.26/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O LIBRARIES: build as dynamic by default FEATURES: GCC MT DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GNUTLS OPENSSL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 Boost.Regex Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW FLTK wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT Xerces Xalan SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType MAGIC CURL PROJECTS: enabled: cgi local_lbsm connext ncbi_crypt serial objects app algo disabled: bdb dbapi ctools gui gbench Tools / flags / paths: /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.mk Configuration header: /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build && make all_r or simply run make in the current directory Alternatively, cd /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build && make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26' debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/ncbi-blast+-2.2.26' cd c++/BUILD/build && \ make -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" \ APP_LDFLAGS='-Wl,-E -fPIE -pie' make[2]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' /usr/bin/make -w -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' cd corelib/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=corelib sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd util/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' cd util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' cd serial/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=serial sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/serial TMPL=serial -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp -o stdtypes.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp:34: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/stdtypes.cpp:1631:36: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp -o objistr.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp:46: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1163:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp:1791:76: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder_little_endian, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1175:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistr.cpp:1791:76: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp -o objhook.o /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CReadObjectHook&, ncbi::CObjectIStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:241:37: warning: 'void ncbi::CObjectTypeInfo::SetGlobalReadHook(ncbi::CReadObjectHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:273) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CWriteObjectHook&, ncbi::CObjectOStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:258:38: warning: 'void ncbi::CObjectTypeInfo::SetGlobalWriteHook(ncbi::CWriteObjectHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:307) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CSkipObjectHook&, ncbi::CObjectIStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:275:37: warning: 'void ncbi::CObjectTypeInfo::SetGlobalSkipHook(ncbi::CSkipObjectHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:341) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, ncbi::CCopyObjectHook&, ncbi::CObjectStreamCopier*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:292:37: warning: 'void ncbi::CObjectTypeInfo::SetGlobalCopyHook(ncbi::CCopyObjectHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:375) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CReadClassMemberHook&, ncbi::CObjectIStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:312:39: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CWriteClassMemberHook&, ncbi::CObjectOStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:332:40: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalWriteHook(ncbi::CWriteClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:278) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CSkipClassMemberHook&, ncbi::CObjectIStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:352:39: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalSkipHook(ncbi::CSkipClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:287) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CCopyClassMemberHook&, ncbi::CObjectStreamCopier*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:372:39: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalCopyHook(ncbi::CCopyClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:296) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CReadChoiceVariantHook&, ncbi::CObjectIStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:392:40: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalReadHook(ncbi::CReadChoiceVariantHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:350) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CWriteChoiceVariantHook&, ncbi::CObjectOStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:412:41: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalWriteHook(ncbi::CWriteChoiceVariantHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:359) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CSkipChoiceVariantHook&, ncbi::CObjectIStream*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:432:40: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalSkipHook(ncbi::CSkipChoiceVariantHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:368) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp: In constructor 'ncbi::CObjectHookGuardBase::CObjectHookGuardBase(const ncbi::CObjectTypeInfo&, const string&, ncbi::CCopyChoiceVariantHook&, ncbi::CObjectStreamCopier*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objhook.cpp:452:40: warning: 'void ncbi::CObjectTypeInfoVI::SetGlobalCopyHook(ncbi::CCopyChoiceVariantHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:377) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrasn.cpp -o objostrasn.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objostrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrasn.cpp:37: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrasn.cpp:312:16: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrasnb.cpp -o objostrasnb.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objostrasnb.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrasnb.cpp:37: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrasnb.cpp:486:16: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrxml.cpp -o objostrxml.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objostrxml.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrxml.cpp:37: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrxml.cpp:761:16: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrxml.cpp -o objistrxml.o /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrxml.cpp: In member function 'virtual std::string ncbi::CObjectIStreamXml::ReadFileHeader()': /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrxml.cpp:525:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrjson.cpp -o objistrjson.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objhook.hpp:38, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objistrjson.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrjson.cpp:37: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/objistrjson.cpp:511:16: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/pathhook.cpp -o pathhook.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -shared -o libxser.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxser.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxser.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxser.so ln -f .xser.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xser.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' cd serial/datatool/ && /usr/bin/make -w APP_PROJ=datatool LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool TMPL=datatool -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 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--param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O -Wl,-E -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxutil -lxncbi -lrt -lm -lpthread -o datatool /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f datatool /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f datatool /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh general all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' cd objects/general/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=general sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general TMPL=general -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp -o uoconv.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:46:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1163:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:96:71: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h: In member function 'unsigned int bm::deserializer::deserialize(bm::deserializer::bvector_type&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, DEC = bm::decoder_little_endian, bm::deserializer::bvector_type = bm::bvector<>, bm::word_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1175:56: instantiated from 'unsigned int bm::deserialize(BV&, const unsigned char*, bm::word_t*) [with BV = bm::bvector<>, bm::word_t = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:96:71: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmserial.h:1475:20: warning: variable 'glevels' set but not used [-Wunused-but-set-variable] In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.26/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/uoconv.cpp:187:20: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -shared -o libgeneral.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libgeneral.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libgeneral.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libgeneral.so ln -f .general.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.general.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh biblio all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' cd objects/biblio/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=biblio sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio TMPL=biblio -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -shared -o libbiblio.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libbiblio.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libbiblio.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libbiblio.so ln -f .biblio.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.biblio.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' cd algo/blast/composition_adjustment/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' cd algo/blast/composition_adjustment/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=composition_adjustment sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/redo_alignment.c:184:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/redo_alignment.c:199:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libcomposition_adjustment.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libcomposition_adjustment.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libcomposition_adjustment.so ln -f .composition_adjustment.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' cd util/tables/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' cd util/tables/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=tables sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/util/tables TMPL=tables -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -shared -o libtables.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtables.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtables.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libtables.so ln -f .tables.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.tables.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' cd connect/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' cd connect/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnect sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/connect TMPL=xconnect -w all /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/.#lock-map. make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc 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/build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -shared -o libxconnect.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_lbsmd.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lnsl -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxconnect.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxconnect.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxconnect.so ln -f .xconnect.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' cd algo/blast/core/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core TMPL=blast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_hits.c:3206:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nascan.c: In function 's_BlastNaScanSubject_8_4': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_nascan.c:110:10: warning: variable 'lut_word_length' set but not used [-Wunused-but-set-variable] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c: In function 's_BlastGumbelBlkNew': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c: At top level: /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -shared -o libblast.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblast.so ln -f .blast.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blast.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' cd objects/medline/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh medline all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' cd objects/medline/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=medline sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline TMPL=medline -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -shared -o libmedline.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libmedline.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libmedline.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libmedline.so ln -f .medline.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.medline.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh pub all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' cd objects/pub/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=pub sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub TMPL=pub -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -shared -o libpub.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libpub.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libpub.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libpub.so ln -f .pub.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.pub.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' cd objects/seqcode/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqcode all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' cd objects/seqcode/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqcode sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode TMPL=seqcode -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -shared -o libseqcode.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqcode.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqcode.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqcode.so ln -f .seqcode.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' cd util/sequtil/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' cd util/sequtil/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=sequtil sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil TMPL=sequtil -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp: In static member function 'static ncbi::SIZE_TYPE ncbi::CSeqConvert_imp::x_Convert4naTo2na(const char*, ncbi::TSeqPos, ncbi::TSeqPos, char*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp:702:25: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp:730:25: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_convert_imp.cpp:736:25: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -shared -o libsequtil.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libsequtil.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libsequtil.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libsequtil.so ln -f .sequtil.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' cd objects/seq/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/Makefile.sources builddir=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -w all make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' status=0 ; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../$x ; \ (cd $d && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqalign' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqalign' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqblock' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqblock' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqres' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqres' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqtable' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqtable' make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seq all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqblock/seqblock.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqres/seqres.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' cd objects/seq/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seq sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq TMPL=seq -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqalign__.cpp -o seqalign__.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In static member function 'static void ncbi::objects::CDenseSegReserveStartsHook::SetGlobalHook()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1550:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In static member function 'static void ncbi::objects::CDenseSegReserveLensHook::SetGlobalHook()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1580:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp: In static member function 'static void ncbi::objects::CDenseSegReserveStrandsHook::SetGlobalHook()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:1610:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:7:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Score.cpp: In static member function 'static void ncbi::objects::CReadSharedScoreIdHook::SetGlobalHook()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Score.cpp:80:41: warning: 'void ncbi::CObjectTypeInfoMI::SetGlobalReadHook(ncbi::CReadClassMemberHook*) const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/objectiter.hpp:269) [-Wdeprecated-declarations] In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1352:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1356:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objects/seqalign/Std_seg.hpp:79) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1361:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Seq_align.cpp:1335) [-Wdeprecated-declarations] In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:17:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Spliced_seg.cpp: In member function 'void ncbi::objects::CSpliced_seg::Validate(bool) const': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Spliced_seg.cpp:183:14: warning: variable 'genomic_plus' set but not used [-Wunused-but-set-variable] In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/seqalign__.cpp:19:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Std_seg.cpp: In member function 'void ncbi::objects::CStd_seg::SwapRows(int, int)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Std_seg.cpp:131:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqalign/Std_seg.cpp:131:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqfeat__.cpp -o seqfeat__.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function 'void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/../seqfeat/OrgMod.cpp:138:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -shared -o libseq.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseq.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseq.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseq.so ln -f .seq.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seq.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh blastdb all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' cd objects/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb TMPL=blastdb -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -shared -o libblastdb.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastdb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastdb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastdb.so ln -f .blastdb.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' cd util/creaders/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' cd util/creaders/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=creaders sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/util/creaders TMPL=creaders -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -shared -o libcreaders.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libcreaders.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libcreaders.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libcreaders.so ln -f .creaders.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.creaders.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' cd objects/genomecoll/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh genome_collection all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh gencoll_client all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' cd objects/genomecoll/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=genome_collection sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll TMPL=genome_collection -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -shared -o libgenome_collection.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libgenome_collection.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libgenome_collection.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libgenome_collection.so ln -f .genome_collection.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' cd objects/seqset/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqset all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' cd objects/seqset/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqset sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset TMPL=seqset -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -shared -o libseqset.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqset.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqset.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqset.so ln -f .seqset.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seqset.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh scoremat all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' cd objects/scoremat/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=scoremat sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat TMPL=scoremat -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -shared -o libscoremat.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libscoremat.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libscoremat.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libscoremat.so ln -f .scoremat.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' cd objects/seqedit/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqedit all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' cd objects/seqedit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqedit sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit TMPL=seqedit -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -shared -o libseqedit.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqedit.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqedit.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqedit.so ln -f .seqedit.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' cd objects/seqsplit/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh seqsplit all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' cd objects/seqsplit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqsplit sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit TMPL=seqsplit -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -shared -o libseqsplit.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqsplit.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqsplit.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqsplit.so ln -f .seqsplit.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' cd objmgr/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' cd objmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=objmgr sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr TMPL=objmgr -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 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/build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -shared -o libxobjmgr.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjmgr.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjmgr.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjmgr.so ln -f .xobjmgr.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqdb sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::list > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:10: warning: variable 'found' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -shared -o libseqdb.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqdb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqdb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqdb.so ln -f .seqdb.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' cd objects/submit/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh submit all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' cd objects/submit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=submit sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit TMPL=submit -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -shared -o libsubmit.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libsubmit.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libsubmit.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libsubmit.so ln -f .submit.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.submit.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' cd objtools/readers/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' cd objtools/readers/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjread sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers TMPL=xobjread -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:227:50: warning: 'static ncbi::objects::CRmReader* ncbi::objects::CRmReader::OpenReader(ncbi::CNcbiIstream&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/readers/rm_reader.hpp:750) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:228:32: warning: 'void ncbi::objects::CRmReader::Read(ncbi::CRef, ncbi::objects::IRmReaderFlags::TFlags, size_t)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/readers/rm_reader.hpp:752) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:229:35: warning: 'static void ncbi::objects::CRmReader::CloseReader(ncbi::objects::CRmReader*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/readers/rm_reader.hpp:751) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryAgp()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/format_guess_ex.cpp:244:33: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/readers/agp_read.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/readers/agp_read.hpp:60) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/readers/agp_read.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::Read(bool)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/aln_reader.cpp:180:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta.cpp -o fasta.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta.cpp: In member function 'ncbi::CRef ncbi::objects::CFastaReader::ReadAlignedSet(int)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta.cpp:873:75: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/getfeature.cpp: In member function 'std::vector& ncbi::objects::CGetFeature::GetFeatInfo(const string&, const ncbi::CRange&, ncbi::objects::SFeatInfo*&, ncbi::objects::SFeatInfo*&, int)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/getfeature.cpp:82:14: warning: variable 'has_feature' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/wiggle_data.cpp -o wiggle_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::CAutoInitRef&, ncbi::CTempString)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/source_mod_parser.cpp:517:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -shared -o libxobjread.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O format_guess_ex.o acc_pattern.o agp_read.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_data.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lpub -lgeneral -lxser -lcreaders -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjread.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjread.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjread.so ln -f .xobjread.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' cd objmgr/util/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' cd objmgr/util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util TMPL=util -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/weight.cpp -o weight.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/weight.cpp: In function 'double ncbi::objects::GetProteinWeight(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CSeq_loc*, ncbi::objects::TGetProteinWeight)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/weight.cpp:137:55: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp -o sequence.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CConstRef ncbi::objects::sequence::GetBestMrnaForCds(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:1186:60: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:1204:63: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CConstRef ncbi::objects::sequence::GetBestCdsForMrna(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:1479:63: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::objects::CBioseq_Handle ncbi::objects::sequence::GetNucleotideParent(const ncbi::objects::CBioseq_Handle&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:2221:64: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp: In static member function 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/sequence.cpp:3509:65: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/seqtitle.cpp: In function 'bool ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq&, std::string*, ncbi::objects::sequence::TGetTitleFlags)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/seqtitle.cpp:654:16: warning: variable 'search_depth' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -shared -o libxobjutil.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjutil.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjutil.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjutil.so ln -f .xobjutil.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' cd objtools/seqmasks_io/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' cd objtools/seqmasks_io/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqmasks_io sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libseqmasks_io.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libseqmasks_io.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libseqmasks_io.so ln -f .seqmasks_io.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' cd algo/blast/dbindex/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' cd algo/blast/dbindex/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgoblastdbindex sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex.cpp:98:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgoblastdbindex.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgoblastdbindex.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgoblastdbindex.so ln -f .xalgoblastdbindex.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' cd algo/dustmask/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' cd algo/dustmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgodustmask sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/dustmask TMPL=xalgodustmask -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgodustmask.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgodustmask.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgodustmask.so ln -f .xalgodustmask.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' cd algo/winmask/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' cd algo/winmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgowinmask sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask TMPL=xalgowinmask -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt.cpp: In member function 'virtual void ncbi::CSeqMaskerOstatOpt::doFinalize()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:277:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:21: warning: 'unit_size' may be used uninitialized in this function [-Wuninitialized] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp: In member function 'virtual void ncbi::CSeqMaskerOstatOptBin::write_out(const ncbi::CSeqMaskerOstatOpt::params&) const': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:74:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgowinmask.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgowinmask.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgowinmask.so ln -f .xalgowinmask.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' cd objects/blast/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh blast all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/scoremat/scoremat.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast TMPL=blast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -shared -o libxnetblast.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxnetblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxnetblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxnetblast.so ln -f .xnetblast.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xnetblastcli sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `all'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast TMPL=xnetblastcli -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxnetblastcli.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxnetblastcli.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxnetblastcli.so ln -f .xnetblastcli.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' cd algo/blast/api/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' cd algo/blast/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblast sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api TMPL=xblast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux.cpp: In function 'ncbi::CRef ncbi::blast::TSeqLocVector2Bioseqs(const TSeqLocVector&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux.cpp:1056:69: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_objmgr_tools.cpp: In member function 'virtual std::string ncbi::blast::CBlastQuerySourceOM::GetTitle(int) const': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_objmgr_tools.cpp:354:55: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/psiblast_aux_priv.cpp:472:41: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_search.cpp -o local_search.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp: In function 'ncbi::CRef ncbi::blast::s_QueryVectorToBioseqSet(const ncbi::blast::CBlastQueryVector&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp:73:61: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp: In function 'ncbi::CRef ncbi::blast::s_TSeqLocVectorToBioseqSet(const TSeqLocVector*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgr_query_data.cpp:102:57: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp: In member function 'ncbi::CRef ncbi::blast::CLocalRPSBlast::Run()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp:379:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp: In member function 'ncbi::CRef ncbi::blast::CLocalRPSBlast::RunThreadedSearch()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/rpsblast_local.cpp:412:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -shared -o libxblast.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqdb -lxobjread -lxobjutil -lxobjmgr -lxnetblastcli -lxnetblast -lscoremat -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxblast.so ln -f .xblast.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xblast.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' cd objtools/blast/services/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' cd objtools/blast/services/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_services sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/services TMPL=blast_services -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -shared -o libblast_services.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblast_services.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblast_services.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblast_services.so ln -f .blast_services.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=gene_info sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -shared -o libgene_info.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libgene_info.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libgene_info.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libgene_info.so ln -f .gene_info.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' cd objects/id1/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1 && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh id1 all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' cd objects/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id1 sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1 TMPL=id1 -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -shared -o libid1.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libid1.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libid1.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libid1.so ln -f .id1.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.id1.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' cd objects/id2/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2 && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh id2 all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqsplit/seqsplit.asn /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2' /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' cd objects/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2 sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2 TMPL=id2 -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -shared -o libid2.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libid2.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libid2.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libid2.so ln -f .id2.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.id2.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' cd util/compress/api/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' cd util/compress/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=compress sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api TMPL=compress -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/util/compress/api/tar.cpp -o tar.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -shared -o libxcompress.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxcompress.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxcompress.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxcompress.so ln -f .xcompress.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader.a ln -f .ncbi_xreader-static.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader-static.dep /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lid2 -lseqsplit -lid1 -lseqset -lseq -lgeneral -lxser -lxconnect -lxcompress -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader.so ln -f .ncbi_xreader.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_cache sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_cache.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_cache.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_cache.a ln -f .ncbi_xreader_cache-static.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lseq -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_cache.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_cache.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_cache.so ln -f .ncbi_xreader_cache.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id1.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id1.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id1.a ln -f .ncbi_xreader_id1-static.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id1.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id1.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id1.so ln -f .ncbi_xreader_id1.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id2.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id2.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id2.a ln -f .ncbi_xreader_id2-static.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid2 -lseqsplit -lseq -lxser -lxconnect -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xreader_id2.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xreader_id2.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xreader_id2.so ln -f .ncbi_xreader_id2.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function 'virtual ncbi::objects::CDataLoader::TTSE_Lock ncbi::objects::CGBDataLoader::ResolveConflict(const ncbi::objects::CSeq_id_Handle&, const TTSE_LockSet&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbloader.cpp:848:18: warning: variable 'conflict' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_genbank.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_genbank.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_genbank.a ln -f .ncbi_xloader_genbank-static.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xreader_id2 -lncbi_xreader_id1 -lncbi_xreader_cache -lncbi_xreader -lxobjmgr -lseq -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_genbank.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_genbank.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_genbank.so ln -f .ncbi_xloader_genbank.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' cd objects/taxon1/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1 && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh taxon1 all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' cd objects/taxon1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=taxon1 sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1 TMPL=taxon1 -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -shared -o libtaxon1.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libtaxon1.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libtaxon1.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libtaxon1.so ln -f .taxon1.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' cd objtools/alnmgr/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' cd objtools/alnmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=alnmgr sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr TMPL=alnmgr -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:71:0, from /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.26/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.26/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.26/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h: In constructor 'bm::blocks_manager::blocks_manager(const gap_word_t*, bm::id_t, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::id_t = unsigned int]': /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bm.h:848:20: instantiated from 'bm::bvector::bvector(bm::strategy, const gap_word_t*, bm::bvector::size_type, const Alloc&) [with Alloc = bm::mem_alloc, bm::gap_word_t = short unsigned int, bm::bvector::size_type = unsigned int]' /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/aln_stats.hpp:278:13: instantiated from 'size_t ncbi::CAlnStats<_TAlnIdVec>::x_AddId(const TAlnSeqIdIRef&, size_t, size_t) [with _TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >, size_t = unsigned int, ncbi::TAlnSeqIdIRef = ncbi::CIRef]' /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/aln_stats.hpp:83:21: instantiated from 'ncbi::CAlnStats<_TAlnIdVec>::CAlnStats(const TAlnIdVec&) [with _TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >, ncbi::CAlnStats<_TAlnIdVec>::TAlnIdVec = ncbi::CAlnIdMap, ncbi::CAlnSeqIdsExtract > >]' /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_generators.cpp:999:40: instantiated from here /build/buildd/ncbi-blast+-2.2.26/c++/include/util/bitset/bmblocks.h:649:14: warning: variable 'c' set but not used [-Wunused-but-set-variable] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmap.cpp:1473:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:78:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:195:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:197:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmatch.cpp:199:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:141:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:1209:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wuninitialized] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp:309:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::x_ConsolidateGaps(ncbi::objects::CAlnMixSegments::TSegmentsContainer&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp:404:72: warning: 'seq1' may be used uninitialized in this function [-Wuninitialized] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnsegments.cpp:406:17: warning: 'score1' may be used uninitialized in this function [-Wuninitialized] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.26/c++/include/objtools/alnmgr/alnsegments.hpp:103:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnseq.cpp:86:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp:136:80: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alnvecprint.cpp:300:80: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/score_builder_base.cpp: In function 'void ncbi::s_GetSplicedSegIdentityMismatch(ncbi::objects::CScope&, const ncbi::objects::CSeq_align&, const ncbi::CRangeCollection&, int*, int*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/alnmgr/score_builder_base.cpp:228:31: warning: variable 'is_match' set but not used [-Wunused-but-set-variable] /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -shared -o libxalnmgr.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalnmgr.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalnmgr.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalnmgr.so ln -f .xalnmgr.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' cd cgi/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' cd cgi/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=cgi sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/cgi TMPL=cgi -w all /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/.#lock-map. make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -shared -o libxcgi.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxcgi.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxcgi.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxcgi.so ln -f .xcgi.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' cd html/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' cd html/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=html sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/html TMPL=html -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/node.cpp -o node.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/html.cpp -o html.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/page.cpp -o page.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/components.cpp -o components.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/jsmenu.cpp -o jsmenu.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -shared -o libxhtml.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O node.o html.o htmlhelper.o page.o pager.o selection.o components.o jsmenu.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxhtml.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxhtml.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxhtml.so ln -f .xhtml.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' cd objtools/align_format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' cd objtools/align_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=align_format sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format TMPL=align_format -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp -o showalign.o /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp: In member function 'std::string ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(ncbi::align_format::CDisplaySeqalign::SAlnRowInfo*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp:1698:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::x_GetFeatureInfo(ncbi::align_format::CDisplaySeqalign::TSAlnFeatureInfoList&, ncbi::objects::CScope&, ncbi::objects::CSeqFeatData_Base::E_Choice, int, std::string&, std::list > >&, std::list&, bool) const': /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/showalign.cpp:2655:57: warning: 'void ncbi::objects::feature::GetLabel(const ncbi::objects::CSeq_feat&, std::string*, ncbi::objects::feature::ELabelType, ncbi::objects::CScope*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/util/feature.hpp:92) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -shared -o libalign_format.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libalign_format.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libalign_format.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libalign_format.so ln -f .align_format.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.align_format.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb_format sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -shared -o libblastdb_format.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastdb_format.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastdb_format.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastdb_format.so ln -f .blastdb_format.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_blastdb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_blastdb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_blastdb.so ln -f .ncbi_xloader_blastdb.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libncbi_xloader_blastdb_rmt.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libncbi_xloader_blastdb_rmt.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so ln -f .ncbi_xloader_blastdb_rmt.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/blastinput/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/blastinput/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastinput sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput TMPL=blastinput -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -shared -o libblastinput.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lseqdb -lxobjread -lxobjmgr -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastinput.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastinput.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastinput.so ln -f .blastinput.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' cd objects/blastxml/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh blastxml all File blastxml.module not found. Using defaults... /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' cd objects/blastxml/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastxml sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml TMPL=blastxml -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -shared -o libblastxml.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblastxml.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblastxml.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblastxml.so ln -f .blastxml.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' cd objects/entrez2/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2 && /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/new_module.sh entrez2 all /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.26/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.26/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.26/c++/src all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2' /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.26/c++ -opm /build/buildd/ncbi-blast+-2.2.26/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2 sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2 TMPL=entrez2 -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -shared -o libentrez2.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxser -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libentrez2.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libentrez2.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libentrez2.so ln -f .entrez2.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2cli sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `all'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2 TMPL=entrez2cli -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -shared -o libentrez2cli.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lentrez2 -lxser -lxconnect -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libentrez2cli.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libentrez2cli.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libentrez2cli.so ln -f .entrez2cli.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=test_boost sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' cd algo/blast/format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' cd algo/blast/format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblastformat sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format TMPL=xblastformat -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp:133:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/blast_format.cpp:380:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o In file included from /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/format/data4xmlformat.hpp:133:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -shared -o libxblastformat.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blastfmtutil.o blastxml_format.o blast_format.o data4xmlformat.o build_archive.o vecscreen_run.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxblast -lalign_format -lxalnmgr -lxobjmgr -lxnetblast -lscoremat -lblastxml -lseq -lgeneral -lxser -ltables -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxblastformat.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxblastformat.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxblastformat.so ln -f .xblastformat.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' cd connect/ext/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' /usr/bin/make[4] (Makefile.connext.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnext.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' cd connect/ext/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnext sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext TMPL=xconnext -w all /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnext to make__ext_common per /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/.#lock-map. make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/gcc -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.so .libxconnext.so.stamp /usr/bin/g++ -shared -o libxconnext.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_iprange.o ncbi_localnet.o ncbi_dblb_svcmapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxconnect -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxconnext.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxconnext.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxconnext.so ln -f .xconnext.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xconnext.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w APP_PROJ=blastinput_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadProteinWithGaps::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:422:58: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::RetrieveFromBlastDb_TestSequenceData::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:160:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::RetrieveFromDefaultBlastDb_NoNcbirc::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:193:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::RetrieveFromBlastDbOnly_TestSequenceDataWithAccession::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:236:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromBlastDb_TestSequenceData::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:272:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromNonStandardBlastDb_Config_TestSequenceData::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:302:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromNonStandardBlastDb_ForcedDb_TestSequenceData::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:335:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_RetrieveFromGenbank_TestSequenceData::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:361:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp: In member function 'void blast_scope_src::ConfigFileTest_UseNoDataLoaders::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:384:54: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o blastinput_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastinput_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastinput_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w APP_PROJ=makeindex LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual int ncbi::CMkIndexApplication::Run()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:180:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lcreaders -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o makembindex /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f makembindex /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f makembindex /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/makembindex make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/igblast/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' cd algo/blast/igblast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=igblast sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/igblast TMPL=igblast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -shared -o libigblast.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libigblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libigblast.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libigblast.so ln -f .igblast.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.igblast.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' cd objtools/simple/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' cd objtools/simple/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjsimple sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/simple TMPL=xobjsimple -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -shared -o libxobjsimple.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxobjsimple.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxobjsimple.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxobjsimple.so ln -f .xobjsimple.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/api/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w APP_PROJ=blast_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function 'Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:258:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:6: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1246:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1250:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1255:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1257:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1261:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1263:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1267:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1269:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1273:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1275:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1313:1: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:165) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:440:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 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-I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core 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-Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT 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-Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(int)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.26/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie test_objmgr.o blast_test_util.o blast_unit_test.o bl2seq_unit_test.o gencode_singleton_unit_test.o blastoptions_unit_test.o blastfilter_unit_test.o uniform_search_unit_test.o remote_blast_unit_test.o aascan_unit_test.o ntscan_unit_test.o version_reference_unit_test.o aalookup_unit_test.o subj_ranges_unit_test.o blastengine_unit_test.o linkhsp_unit_test.o blasthits_unit_test.o gapinfo_unit_test.o rps_unit_test.o hspstream_unit_test.o hspstream_test_util.o scoreblk_unit_test.o seqalign_cmp.o seqalign_set_convert.o split_query_unit_test.o phiblast_unit_test.o prelimsearch_unit_test.o psiblast_unit_test.o psibl2seq_unit_test.o traceback_unit_test.o tracebacksearch_unit_test.o msa2pssm_unit_test.o optionshandle_unit_test.o hspfilter_culling_unit_test.o hspfilter_besthit_unit_test.o psiblast_iteration_unit_test.o pssmcreate_unit_test.o blastdiag_unit_test.o blastextend_unit_test.o blastsetup_unit_test.o pssmenginefreqratios_unit_test.o querydata_unit_test.o queryinfo_unit_test.o redoalignment_unit_test.o search_strategy_unit_test.o setupfactory_unit_test.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o seqinfosrc_unit_test.o ntlookup_unit_test.o seqsrc_unit_test.o seqsrc_mock.o pssm_test_util.o pssmcreate_cdd_unit_test.o delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o blast_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w APP_PROJ=blast_format_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithDB::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithBl2seq::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o blast_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_format_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_format_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w APP_PROJ=bdbloader_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include -I../ /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp: In function 'void bdbloader::RetrievePartsOfLargeChromosome(bool)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:256:51: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o bdbloader_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f bdbloader_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f bdbloader_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w APP_PROJ=seqdb_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function 'void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:78:18: warning: variable 'wholeL' set but not used [-Wunused-but-set-variable] /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In member function 'void seqdb::OidRanges::test_method()': /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:1525:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lrt -lm -lpthread -o seqdb_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f seqdb_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f seqdb_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd app/blast/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/Makefile.legacy_blast builddir=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast -w all make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/legacy_blast.pl /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/legacy_blast.pl /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/Makefile.update_blastdb builddir=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast -w all make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/update_blastdb.pl /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/update_blastdb.pl /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_app_util sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blast_app_util -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blast_app_util.cpp: In function 'void ncbi::s_ImportQueries(const ncbi::objects::CBlast4_queries&, ncbi::CRef, ncbi::blast::CBlastAppArgs*)': /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blast_app_util.cpp:372:61: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libblast_app_util.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libblast_app_util.a /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libblast_app_util.a ln -f .blast_app_util.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blast_formatter LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blast_formatter -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blast_formatter /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_formatter /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_formatter /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_formatter make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastn LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blastn -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastn /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastn /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastn /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastn make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastp LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blastp -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastp /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastp /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastp /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastp make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastx LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=blastx -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastx /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastx /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastx /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastx make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=deltablast LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=deltablast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o deltablast /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f deltablast /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f deltablast /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/deltablast make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=psiblast LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=psiblast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/psiblast_app.cpp: In function 'ncbi::CConstRef s_GetQueryBioseq(ncbi::CConstRef, ncbi::CRef, ncbi::CRef)': /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/psiblast_app.cpp:144:77: warning: 'ncbi::objects::CBioseq_Handle ncbi::objects::CScope::GetBioseqHandle(const ncbi::objects::CSeq_loc&)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.26/c++/include/objmgr/scope.hpp:110) [-Wdeprecated-declarations] /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o psiblast /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f psiblast /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f psiblast /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/psiblast make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpsblast LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=rpsblast -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o rpsblast /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f rpsblast /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f rpsblast /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/rpsblast make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpstblastn LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=rpstblastn -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o rpstblastn /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f rpstblastn /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f rpstblastn /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/rpstblastn make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastn LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=tblastn -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o tblastn /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f tblastn /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f tblastn /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/tblastn make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastx LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast TMPL=tblastx -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o tblastx /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f tblastx /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f tblastx /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/tblastx make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=writedb sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -shared -o libwritedb.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libwritedb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libwritedb.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libwritedb.so ln -f .writedb.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.writedb.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdb_aliastool LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdb_aliastool -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdb_aliastool /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdb_aliastool /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdb_aliastool /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcheck LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdbcheck -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdbcheck /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdbcheck /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdbcheck /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcmd LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdbcmd -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdbcmd /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdbcmd /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdbcmd /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcp LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=blastdbcp -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o blastdbcp /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdbcp /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdbcp /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdbcp make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=convert2blastmask LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=convert2blastmask -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o convert2blastmask /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f convert2blastmask /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f convert2blastmask /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeblastdb LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=makeblastdb -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o makeblastdb /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f makeblastdb /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f makeblastdb /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/makeblastdb make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeprofiledb LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb TMPL=makeprofiledb -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lblastxml -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -lrt -lm -lpthread -o makeprofiledb /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f makeprofiledb /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f makeprofiledb /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' cd app/dustmasker/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' cd app/dustmasker/ && /usr/bin/make -w APP_PROJ=dustmasker LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/dustmasker TMPL=dustmasker -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lxobjutil -lseqdb -lblastdb -lcreaders -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o dustmasker /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f dustmasker /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f dustmasker /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/dustmasker make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' cd algo/segmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgosegmask sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/algo/segmask TMPL=xalgosegmask -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libxalgosegmask.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libxalgosegmask.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libxalgosegmask.so ln -f .xalgosegmask.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' cd app/segmasker/ && /usr/bin/make -w APP_PROJ=segmasker LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/segmasker TMPL=segmasker -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjsimple -lseqmasks_io -lxalgosegmask -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o segmasker /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f segmasker /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f segmasker /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/segmasker make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker -w all make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f /build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' cd app/winmasker/ && /usr/bin/make -w APP_PROJ=winmasker LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker TMPL=winmasker -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lcreaders -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o windowmasker /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f windowmasker /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f windowmasker /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/windowmasker make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' cd objmgr/split/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' cd objmgr/split/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2_split sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split TMPL=id2_split -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -shared -o libid2_split.so -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lrt -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f libid2_split.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib ln -f libid2_split.so /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib/libid2_split.so ln -f .id2_split.dep /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/align_format/unit_test/ && /usr/bin/make -w APP_PROJ=align_format_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lcreaders -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o align_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f align_format_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f align_format_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w APP_PROJ=blastdb_format_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lrt -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blastdb_format_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blastdb_format_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w APP_PROJ=gene_info_reader LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o gene_info_reader /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f gene_info_reader /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f gene_info_reader /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w APP_PROJ=gene_info_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lrt -lm -lpthread -o gene_info_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f gene_info_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f gene_info_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_demo LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o seqdb_demo /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f seqdb_demo /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f seqdb_demo /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_perf LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o seqdb_perf /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f seqdb_perf /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f seqdb_perf /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w APP_PROJ=writedb_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie writedb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lxobjutil -lcreaders -lblastdb -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lrt -lm -lpthread -o writedb_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f writedb_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f writedb_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for `sources'. make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w APP_PROJ=blast_services_unit_test LIB_PROJ="" sources= configurables=configurables.null make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w all make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -c -Wall -Wno-format-y2k -pthread -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIE -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.26/c++/include /build/buildd/ncbi-blast+-2.2.26/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O9 -finline-functions -fstrict-aliasing -ffast-math -fomit-frame-pointer -Wl,-E -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lrt -lm -lpthread -o blast_services_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.26/c++/scripts/common/impl/if_diff.sh ln -f blast_services_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin ln -f blast_services_unit_test /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' make[2]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' make[1]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26' debian/rules override_dh_auto_test make[1]: Entering directory `/build/buildd/ncbi-blast+-2.2.26' dh_auto_test make[2]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++' if test -s ""; then \ cd /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' ====================================================================== make[4]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress/api' make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/compress' echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/bitset' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util/bitset' echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' echo 'Warning: non-existent sub-project "services"' Warning: non-existent sub-project "services" /usr/bin/make -C ext -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect/ext' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial/datatool' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/serial' echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/blastxml' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/ncbimime' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/taxon3' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/access' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/macro' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects/macro' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr/split' make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools' /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/gene_info_reader' echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/blast' echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -C pubseq -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' NOTE: Skipping project pubseq due to unmet requirements: PubSeqOS make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -C pubseq2 -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' NOTE: Skipping project pubseq2 due to unmet requirements: PubSeqOS make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for `check_add_r'. make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank/gicache' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/genbank' echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders/blastdb' echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" echo 'Warning: non-existent sub-project "trace"' Warning: non-existent sub-project "trace" echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/alnmgr' echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/format' echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" echo 'Warning: non-existent sub-project "edit"' Warning: non-existent sub-project "edit" echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/cleanup' echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/seqmasks_io' echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools/align_format' echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/objtools' echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/winmask' echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/dbindex' echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput/unit_test' echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for `check_add_r'. make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/igblast' echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[8]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for `check_add_r'. make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo/segmask' echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/algo' echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app' echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blast' echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app/blastdb' echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" echo 'Warning: non-existent sub-project "lds_indexer"' Warning: non-existent sub-project "lds_indexer" echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" make[5]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build/app' echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... Done. OK -- [serial/datatool] datatool.sh (real 0.36, user 0.24, sys 0.08) OK -- [serial/datatool] datatool_xml.sh (real 0.05, user 0.01, sys 0.03) OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.00, sys 0.01) Succeeded : 3 Timeout : 0 Failed : 0 Absent : 0 ******** ALL TESTS COMPLETED SUCCESSFULLY ******** make[3]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++/BUILD/build' make[2]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26/c++' c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err make[1]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26' /usr/bin/fakeroot debian/rules binary dh binary -Dc++ --with autotools_dev --with quilt dh_testroot -O-Dc\+\+ dh_prep -O-Dc\+\+ dh_installdirs -O-Dc\+\+ debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/ncbi-blast+-2.2.26' cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/ncbi-blast+-2.2.26' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool \ debian/ncbi-blast+/usr/bin/project_tree_builder \ debian/ncbi-blast+/usr/lib/ncbi-blast+/libtest_*.so if test -d debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin/; fi make[1]: Leaving directory `/build/buildd/ncbi-blast+-2.2.26' dh_installdocs -O-Dc\+\+ dh_installchangelogs -O-Dc\+\+ dh_installexamples -O-Dc\+\+ dh_installman -O-Dc\+\+ dh_installcatalogs -O-Dc\+\+ dh_installcron -O-Dc\+\+ dh_installdebconf -O-Dc\+\+ dh_installemacsen -O-Dc\+\+ dh_installifupdown -O-Dc\+\+ dh_installinfo -O-Dc\+\+ dh_installinit -O-Dc\+\+ dh_installmenu -O-Dc\+\+ dh_installmime -O-Dc\+\+ dh_installmodules -O-Dc\+\+ dh_installlogcheck -O-Dc\+\+ dh_installlogrotate -O-Dc\+\+ dh_installpam -O-Dc\+\+ dh_installppp -O-Dc\+\+ dh_installudev -O-Dc\+\+ dh_installwm -O-Dc\+\+ dh_installxfonts -O-Dc\+\+ dh_installgsettings -O-Dc\+\+ dh_bugfiles -O-Dc\+\+ dh_ucf -O-Dc\+\+ dh_lintian -O-Dc\+\+ dh_gconf -O-Dc\+\+ dh_icons -O-Dc\+\+ dh_perl -O-Dc\+\+ dh_usrlocal -O-Dc\+\+ dh_link -O-Dc\+\+ dh_compress -O-Dc\+\+ dh_fixperms -O-Dc\+\+ dh_strip -O-Dc\+\+ dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs -O-Dc\+\+ dh_shlibdeps -O-Dc\+\+ dh_installdeb -O-Dc\+\+ dh_gencontrol -O-Dc\+\+ dh_md5sums -O-Dc\+\+ dh_builddeb -O-Dc\+\+ INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `ncbi-blast+' in `../ncbi-blast+_2.2.26-3ubuntu1_i386.deb'. INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `ncbi-blast+-legacy' in `../ncbi-blast+-legacy_2.2.26-3ubuntu1_all.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../ncbi-blast+_2.2.26-3ubuntu1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build ncbi-blast+-2.2.26 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120815-2338 chroot-autobuild/build/buildd/ncbi-blast+_2.2.26-3ubuntu1_i386.deb: new debian package, version 2.0. size 10786108 bytes: control archive= 3464 bytes. 1203 bytes, 24 lines control 6138 bytes, 93 lines md5sums Package: ncbi-blast+ Version: 2.2.26-3ubuntu1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 28940 Depends: ncbi-data, python, perl, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libpcre3 (>= 8.10), libstdc++6 (>= 4.6), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. chroot-autobuild/build/buildd/ncbi-blast+-legacy_2.2.26-3ubuntu1_all.deb: new debian package, version 2.0. size 7670 bytes: control archive= 661 bytes. 615 bytes, 18 lines control 234 bytes, 3 lines md5sums Package: ncbi-blast+-legacy Source: ncbi-blast+ Version: 2.2.26-3ubuntu1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 46 Depends: ncbi-blast+ Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: NCBI Blast legacy call script This package adds some fake scripts to call NCBI+ programs with the NCBI blast command line. It makes use of the legacy_blast script in ncbi-blast+ package. . To use those scripts, /usr/share/ncbi-blast+/bin must be added to the PATH. chroot-autobuild/build/buildd/ncbi-blast+_2.2.26-3ubuntu1_i386.deb: drwxr-xr-x root/root 0 2012-08-15 23:38 ./ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/bin/ -rwxr-xr-x root/root 173520 2012-08-15 23:38 ./usr/bin/psiblast -rwxr-xr-x root/root 173520 2012-08-15 23:38 ./usr/bin/deltablast -rwxr-xr-x root/root 95692 2012-08-15 23:38 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 38304 2012-08-15 23:38 ./usr/bin/segmasker -rwxr-xr-x root/root 144848 2012-08-15 23:38 ./usr/bin/blastn -rwxr-xr-x root/root 71120 2012-08-15 23:38 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 5950 2012-08-15 23:38 ./usr/bin/windowmasker_2.2.22_adapter -rwxr-xr-x root/root 42400 2012-08-15 23:38 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 51346 2012-08-15 23:38 ./usr/bin/legacy_blast -rwxr-xr-x root/root 46492 2012-08-15 23:38 ./usr/bin/makembindex -rwxr-xr-x root/root 38300 2012-08-15 23:38 ./usr/bin/dustmasker -rwxr-xr-x root/root 26016 2012-08-15 23:38 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 144848 2012-08-15 23:38 ./usr/bin/tblastx -rwxr-xr-x root/root 165328 2012-08-15 23:38 ./usr/bin/makeblastdb -rwxr-xr-x root/root 11874 2012-08-15 23:38 ./usr/bin/update_blastdb -rwxr-xr-x root/root 157136 2012-08-15 23:38 ./usr/bin/tblastn -rwxr-xr-x root/root 42396 2012-08-15 23:38 ./usr/bin/windowmasker -rwxr-xr-x root/root 144848 2012-08-15 23:38 ./usr/bin/blastp -rwxr-xr-x root/root 177620 2012-08-15 23:38 ./usr/bin/blast_formatter -rwxr-xr-x root/root 54688 2012-08-15 23:38 ./usr/bin/blastdbcp -rwxr-xr-x root/root 144848 2012-08-15 23:38 ./usr/bin/blastx -rwxr-xr-x root/root 112028 2012-08-15 23:38 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 144848 2012-08-15 23:38 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 128460 2012-08-15 23:38 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 30116 2012-08-15 23:38 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 144848 2012-08-15 23:38 ./usr/bin/rpstblastn drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/lib/ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 13504 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libtables.so -rw-r--r-- root/root 189776 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libncbi_xreader_cache.so -rw-r--r-- root/root 75060 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 111924 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 1267528 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxser.so -rw-r--r-- root/root 283964 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxalgowinmask.so -rw-r--r-- root/root 714156 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libseqdb.so -rw-r--r-- root/root 628020 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxnetblast.so -rw-r--r-- root/root 21808 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxobjsimple.so -rw-r--r-- root/root 116096 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 62772 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libseqcode.so -rw-r--r-- root/root 612104 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 718280 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxalnmgr.so -rw-r--r-- root/root 480600 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 435508 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libid2_split.so -rw-r--r-- root/root 70964 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libblastxml.so -rw-r--r-- root/root 111952 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 95540 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libigblast.so -rw-r--r-- root/root 1279760 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxobjread.so -rw-r--r-- root/root 87348 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 62964 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxconnext.so -rw-r--r-- root/root 181552 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxalgoblastdbindex.so -rw-r--r-- root/root 709940 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 369980 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libwritedb.so -rw-r--r-- root/root 50488 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libentrez2cli.so -rw-r--r-- root/root 1557904 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxblast.so -rw-r--r-- root/root 46452 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libseqmasks_io.so -rw-r--r-- root/root 83252 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libsubmit.so -rw-r--r-- root/root 345572 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libgeneral.so -rw-r--r-- root/root 2663988 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxobjmgr.so -rw-r--r-- root/root 79164 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 83328 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 316732 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 435556 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxhtml.so -rw-r--r-- root/root 1892432 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxncbi.so -rw-r--r-- root/root 4375432 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libseq.so -rw-r--r-- root/root 206188 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libncbi_xloader_genbank.so -rw-r--r-- root/root 615860 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxconnect.so -rw-r--r-- root/root 75064 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 34116 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxregexp.so -rw-r--r-- root/root 597736 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 337212 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxcompress.so -rw-r--r-- root/root 111924 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 263480 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxblastformat.so -rw-r--r-- root/root 271668 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libid2.so -rw-r--r-- root/root 9468 2012-08-15 23:38 ./usr/lib/ncbi-blast+/libxalgosegmask.so -rw-r--r-- root/root 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./usr/share/doc/ncbi-blast+/README.Debian chroot-autobuild/build/buildd/ncbi-blast+-legacy_2.2.26-3ubuntu1_all.deb: drwxr-xr-x root/root 0 2012-08-15 23:38 ./ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/share/ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/share/doc/ncbi-blast+-legacy/ -rw-r--r-- root/root 11447 2012-08-15 15:31 ./usr/share/doc/ncbi-blast+-legacy/copyright -rw-r--r-- root/root 2521 2012-08-15 15:37 ./usr/share/doc/ncbi-blast+-legacy/changelog.Debian.gz drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/ drwxr-xr-x root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/ -rwxr-xr-x root/root 65 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/blastall -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/fastacmd -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/megablast -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/bl2seq -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/formatdb -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/blastpgp -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/rpsblast -> legacy.sh lrwxrwxrwx root/root 0 2012-08-15 23:38 ./usr/share/ncbi-blast+/bin/seedtop -> legacy.sh ncbi-blast+_2.2.26-3ubuntu1_i386.changes: Format: 1.8 Date: Wed, 15 Aug 2012 16:37:30 +0100 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: i386 all Version: 2.2.26-3ubuntu1 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Tim Booth Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.26-3ubuntu1) precise; urgency=low . * Rebuild for Ubuntu * Patch to skip test that needs network connection Checksums-Sha1: fdb261e4d6c4f8e590d1fac54621e8200c2ac7d6 10786108 ncbi-blast+_2.2.26-3ubuntu1_i386.deb a91421b2fe3e2a7faa297dcd84d764969bc4e8e3 7670 ncbi-blast+-legacy_2.2.26-3ubuntu1_all.deb Checksums-Sha256: 13e166f05f89ae0b210f2b1b7754fa4f7fd3be0dea83b0c326d7a36eadb08d83 10786108 ncbi-blast+_2.2.26-3ubuntu1_i386.deb 414e0c96c1ea3202c5653d35b1bb044942b1438888a3d519a6c77b537b2188bb 7670 ncbi-blast+-legacy_2.2.26-3ubuntu1_all.deb Files: 512f94d1d764f0f9fbf3b0da31b7f1e3 10786108 science optional ncbi-blast+_2.2.26-3ubuntu1_i386.deb f5a1bb387c3d39dc8b9fe4bec5a3ecf8 7670 science optional ncbi-blast+-legacy_2.2.26-3ubuntu1_all.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120815-2338 Build needed 00:40:37, 266528k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'b9742a1fb6769ae622a751e52d763522d993abaf'] Scanning for processes to kill in build /home/buildd/build-b9742a1fb6769ae622a751e52d763522d993abaf/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'b9742a1fb6769ae622a751e52d763522d993abaf'] Unmounting chroot for build b9742a1fb6769ae622a751e52d763522d993abaf... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'b9742a1fb6769ae622a751e52d763522d993abaf'] Removing build b9742a1fb6769ae622a751e52d763522d993abaf