RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 21 Aug 16:03:34 ntpdate[3419]: step time server 10.211.37.1 offset -37723.130548 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '750d77cd6c0b53cfac9589fd1309276858eb7a7d', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build 750d77cd6c0b53cfac9589fd1309276858eb7a7d RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '750d77cd6c0b53cfac9589fd1309276858eb7a7d'] Mounting chroot for build 750d77cd6c0b53cfac9589fd1309276858eb7a7d RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '750d77cd6c0b53cfac9589fd1309276858eb7a7d', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-750d77cd6c0b53cfac9589fd1309276858eb7a7d RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '750d77cd6c0b53cfac9589fd1309276858eb7a7d', 'i386'] Updating debian chroot for build 750d77cd6c0b53cfac9589fd1309276858eb7a7d Ign http://ppa.launchpad.net precise InRelease Get:1 http://ppa.launchpad.net precise Release.gpg [316 B] Get:2 http://ppa.launchpad.net precise Release [11.9 kB] Ign http://ppa.launchpad.net precise Release Get:3 http://ppa.launchpad.net precise/main i386 Packages [9581 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:4 http://ftpmaster.internal precise Release.gpg [198 B] Get:5 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:6 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:7 http://ftpmaster.internal precise Release [49.6 kB] Get:8 http://ftpmaster.internal precise-security Release [49.6 kB] Get:9 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:10 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [161 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [40.8 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [376 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [124 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9672 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.3 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.0 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [74.0 kB] Fetched 11.6 MB in 14s (826 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 18s (1049 kB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 21 05:37:48 UTC 2012. Universal Time is now: Tue Aug 21 05:37:48 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '750d77cd6c0b53cfac9589fd1309276858eb7a7d', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'proftmb_1.1.10-1.dsc'] Initiating build 750d77cd6c0b53cfac9589fd1309276858eb7a7d with 2 jobs across 2 processor cores. Automatic build of proftmb_1.1.10-1 on platinum by sbuild/i386 1.170.5 Build started at 20120821-0537 ****************************************************************************** proftmb_1.1.10-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8.0.0), autotools-dev, help2man, libgsl0-dev, opt Checking for already installed source dependencies... debhelper: missing autotools-dev: missing help2man: missing libgsl0-dev: missing opt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev help2man libgsl0-dev opt Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libgsl0ldbl liblocale-gettext-perl libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base help2man html2text intltool-debian libcroco3 libgettextpo0 libgsl0-dev libgsl0ldbl liblocale-gettext-perl libmagic1 libpipeline1 libunistring0 libxml2 man-db opt po-debconf 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 8081 kB of archives. After this operation, 26.0 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! liblocale-gettext-perl libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file bsdmainutils gettext-base groff-base man-db autotools-dev html2text gettext intltool-debian po-debconf dh-apparmor debhelper help2man libgsl0ldbl libgsl0-dev opt Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main liblocale-gettext-perl i386 1.05-7build1 [19.3 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:19 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main help2man i386 1.40.4ubuntu1 [54.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libgsl0ldbl i386 1.15+dfsg-1build1 [962 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libgsl0-dev i386 1.15+dfsg-1build1 [1240 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/universe opt i386 3.19-1.1 [75.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8081 kB in 6s (1323 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12283 files and directories currently installed.) Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7build1_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Selecting previously unselected package help2man. Unpacking help2man (from .../help2man_1.40.4ubuntu1_i386.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1build1_i386.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg-1build1_i386.deb) ... Selecting previously unselected package opt. Unpacking opt (from .../archives/opt_3.19-1.1_i386.deb) ... Setting up liblocale-gettext-perl (1.05-7build1) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up autotools-dev (20120210.1ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up help2man (1.40.4ubuntu1) ... Setting up libgsl0ldbl (1.15+dfsg-1build1) ... Setting up libgsl0-dev (1.15+dfsg-1build1) ... Setting up opt (3.19-1.1) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package opt should be updated. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Aug 17 15:04:12 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./proftmb_1.1.10-1.dsc dpkg-source: info: extracting proftmb in proftmb-1.1.10 dpkg-source: info: unpacking proftmb_1.1.10.orig.tar.gz dpkg-source: info: unpacking proftmb_1.1.10-1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package proftmb dpkg-buildpackage: source version 1.1.10-1 dpkg-source --before-build proftmb-1.1.10 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel rm -f debian/proftmb.substvars rm -f debian/proftmb.*.debhelper rm -rf debian/proftmb/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build dh build --parallel dh_testdir -O--parallel dh_auto_configure -O--parallel ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=\${prefix}/lib/proftmb --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for main in -lopt... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gsl/gsl_errno.h usability... yes checking gsl/gsl_errno.h presence... yes checking for gsl/gsl_errno.h... yes checking opt.h usability... yes checking opt.h presence... yes checking for opt.h... yes checking for an ANSI C-conforming const... yes checking for --enable-debug... no configure: creating ./config.status config.status: creating Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -O--parallel make -j2 make[1]: Entering directory `/build/buildd/proftmb-1.1.10' make all-recursive make[2]: Entering directory `/build/buildd/proftmb-1.1.10' Making all in examples make[3]: Entering directory `/build/buildd/proftmb-1.1.10/examples' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/proftmb-1.1.10/examples' Making all in src make[3]: Entering directory `/build/buildd/proftmb-1.1.10/src' g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Backward.o Backward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o BaumWelch.o BaumWelch.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Eval.o Eval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o ExpectA.o ExpectA.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o ExpectC.o ExpectC.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Forward.o Forward.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o GradientDescent.o GradientDescent.cpp GradientDescent.cpp: In member function 'void Par::InitializeGradientDescent()': GradientDescent.cpp:376:8: warning: variable 'sum' set but not used [-Wunused-but-set-variable] g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o HMMEval.o HMMEval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o HMMOutput.o HMMOutput.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o HTools.o HTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Krogh1Best.o Krogh1Best.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Load.o Load.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Output.o Output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Par.o Par.cpp Par.cpp: In static member function 'static void Par::LoadL2L(char*)': Par.cpp:375:15: warning: variable 'cur_iln' set but not used [-Wunused-but-set-variable] g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Params.o Params.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Posterior.o Posterior.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Regularization.o Regularization.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Seq.o Seq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Sov.o Sov.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o structs.o structs.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Tally.o Tally.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Tools.o Tools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o TrainSeq.o TrainSeq.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Viterbi.o Viterbi.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o Zscore.o Zscore.cpp g++ -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -DNDEBUG -c -o proftmb.o proftmb.cpp sed -e 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;' < proftmb_example.txt.raw > proftmb_example.txt rm -f libhmm.a ar cru libhmm.a Backward.o BaumWelch.o Eval.o ExpectA.o ExpectC.o Forward.o GradientDescent.o HMMEval.o HMMOutput.o HTools.o Krogh1Best.o Load.o Output.o Par.o Params.o Posterior.o Regularization.o Seq.o Sov.o structs.o Tally.o Tools.o TrainSeq.o Viterbi.o Zscore.o ranlib libhmm.a g++ -Wall -O2 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -o proftmb proftmb.o libhmm.a -lgsl -lgslcblas -lm -lopt help2man -n 'per-residue prediction of bacterial transmembrane beta barrels' --output=proftmb.1 --no-info --include=proftmb_example.txt ./proftmb make[3]: Leaving directory `/build/buildd/proftmb-1.1.10/src' make[3]: Entering directory `/build/buildd/proftmb-1.1.10' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/proftmb-1.1.10' make[2]: Leaving directory `/build/buildd/proftmb-1.1.10' make[1]: Leaving directory `/build/buildd/proftmb-1.1.10' dh_auto_test -O--parallel make -j2 check make[1]: Entering directory `/build/buildd/proftmb-1.1.10' Making check in examples make[2]: Entering directory `/build/buildd/proftmb-1.1.10/examples' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/proftmb-1.1.10/examples' Making check in src make[2]: Entering directory `/build/buildd/proftmb-1.1.10/src' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/proftmb-1.1.10/src' make[2]: Entering directory `/build/buildd/proftmb-1.1.10' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/proftmb-1.1.10' make[1]: Leaving directory `/build/buildd/proftmb-1.1.10' /usr/bin/fakeroot debian/rules binary dh binary --parallel dh_testroot -O--parallel dh_prep -O--parallel rm -f debian/proftmb.substvars rm -f debian/proftmb.*.debhelper rm -rf debian/proftmb/ dh_installdirs -O--parallel install -d debian/proftmb dh_auto_install -O--parallel make -j2 install DESTDIR=/build/buildd/proftmb-1.1.10/debian/proftmb make[1]: Entering directory `/build/buildd/proftmb-1.1.10' Making install in examples make[2]: Entering directory `/build/buildd/proftmb-1.1.10/examples' make[3]: Entering directory `/build/buildd/proftmb-1.1.10/examples' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/doc/proftmb/examples" || /bin/mkdir -p "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/doc/proftmb/examples" /usr/bin/install -c -m 644 16761001.Q 1a0s_P.f.1.Q 1af6_A.f.2.Q 1bt9_A.f.3.Q 1fep_A.f.4.Q 1prn.f.5.Q 1qd5_A.f.6.Q 1qj9_A.f.7.Q 1qjp_A.f.8.Q CADN_HUMAN.Q example.Q example_dat.txt example_proftmb_pretty.txt example_proftmb_tabular.txt YQIB_ECOLI.Q '/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/doc/proftmb/examples' make[3]: Leaving directory `/build/buildd/proftmb-1.1.10/examples' make[2]: Leaving directory `/build/buildd/proftmb-1.1.10/examples' Making install in src make[2]: Entering directory `/build/buildd/proftmb-1.1.10/src' make[3]: Entering directory `/build/buildd/proftmb-1.1.10/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/bin" test -z "/usr/share/man/man1" || /bin/mkdir -p "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/man/man1" /usr/bin/install -c proftmb '/build/buildd/proftmb-1.1.10/debian/proftmb/usr/bin' /usr/bin/install -c -m 644 proftmb.1 '/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/man/man1' make[3]: Leaving directory `/build/buildd/proftmb-1.1.10/src' make[2]: Leaving directory `/build/buildd/proftmb-1.1.10/src' make[2]: Entering directory `/build/buildd/proftmb-1.1.10' make[3]: Entering directory `/build/buildd/proftmb-1.1.10' make[3]: Nothing to be done for `install-exec-am'. mkdir -p "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/proftmb" test -z "/usr/share/doc/proftmb" || /bin/mkdir -p "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/doc/proftmb" cp "."/input/* "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/proftmb/" rm -rf `find "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/proftmb" -name .svn` find "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/proftmb" -type d -exec chmod 0755 {} \; /usr/bin/install -c -m 644 README '/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/doc/proftmb' find "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/proftmb" -type f -exec chmod 0644 {} \; make install-data-hook make[4]: Entering directory `/build/buildd/proftmb-1.1.10' sed --in-place -e 's|__pkgdatadir__|/usr/share/proftmb|g' "/build/buildd/proftmb-1.1.10/debian/proftmb/usr/share/proftmb/options" make[4]: Leaving directory `/build/buildd/proftmb-1.1.10' make[3]: Leaving directory `/build/buildd/proftmb-1.1.10' make[2]: Leaving directory `/build/buildd/proftmb-1.1.10' make[1]: Leaving directory `/build/buildd/proftmb-1.1.10' dh_install -O--parallel dh_installdocs -O--parallel install -g 0 -o 0 -m 644 -p debian/copyright debian/proftmb/usr/share/doc/proftmb/copyright dh_installchangelogs -O--parallel install -o 0 -g 0 -p -m644 debian/changelog debian/proftmb/usr/share/doc/proftmb/changelog.Debian dh_installexamples -O--parallel dh_installman -O--parallel man --recode UTF-8 ./proftmb\.1 > proftmb\.1\.new chmod 644 proftmb.1.new mv -f proftmb.1.new proftmb.1 dh_installcatalogs -O--parallel dh_installcron -O--parallel dh_installdebconf -O--parallel install -o 0 -g 0 -d debian/proftmb/DEBIAN dh_installemacsen -O--parallel dh_installifupdown -O--parallel dh_installinfo -O--parallel dh_installinit -O--parallel dh_installmenu -O--parallel dh_installmime -O--parallel dh_installmodules -O--parallel dh_installlogcheck -O--parallel dh_installlogrotate -O--parallel dh_installpam -O--parallel dh_installppp -O--parallel dh_installudev -O--parallel dh_installwm -O--parallel dh_installxfonts -O--parallel dh_installgsettings -O--parallel dh_bugfiles -O--parallel dh_ucf -O--parallel dh_lintian -O--parallel dh_gconf -O--parallel dh_icons -O--parallel dh_perl -O--parallel dh_usrlocal -O--parallel dh_link -O--parallel debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/proftmb-1.1.10' dh_compress -Xexample.Q cd debian/proftmb chmod a-x usr/share/man/man1/proftmb.1 usr/share/doc/proftmb/examples/1qjp_A.f.8.Q usr/share/doc/proftmb/examples/1bt9_A.f.3.Q usr/share/doc/proftmb/examples/1prn.f.5.Q usr/share/doc/proftmb/examples/YQIB_ECOLI.Q usr/share/doc/proftmb/examples/example_dat.txt usr/share/doc/proftmb/examples/1af6_A.f.2.Q usr/share/doc/proftmb/examples/1qd5_A.f.6.Q usr/share/doc/proftmb/examples/CADN_HUMAN.Q usr/share/doc/proftmb/examples/1fep_A.f.4.Q usr/share/doc/proftmb/examples/1a0s_P.f.1.Q usr/share/doc/proftmb/examples/1qj9_A.f.7.Q usr/share/doc/proftmb/changelog.Debian gzip -9nf usr/share/man/man1/proftmb.1 usr/share/doc/proftmb/examples/1qjp_A.f.8.Q usr/share/doc/proftmb/examples/1bt9_A.f.3.Q usr/share/doc/proftmb/examples/1prn.f.5.Q usr/share/doc/proftmb/examples/YQIB_ECOLI.Q usr/share/doc/proftmb/examples/example_dat.txt usr/share/doc/proftmb/examples/1af6_A.f.2.Q usr/share/doc/proftmb/examples/1qd5_A.f.6.Q usr/share/doc/proftmb/examples/CADN_HUMAN.Q usr/share/doc/proftmb/examples/1fep_A.f.4.Q usr/share/doc/proftmb/examples/1a0s_P.f.1.Q usr/share/doc/proftmb/examples/1qj9_A.f.7.Q usr/share/doc/proftmb/changelog.Debian cd '/build/buildd/proftmb-1.1.10' make[1]: Leaving directory `/build/buildd/proftmb-1.1.10' dh_fixperms -O--parallel find debian/proftmb -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/proftmb ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/proftmb/usr/share/doc -type f ! -regex 'debian/proftmb/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/proftmb/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/proftmb/usr/share/man debian/proftmb/usr/man/ debian/proftmb/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/proftmb -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/proftmb/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/proftmb/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/proftmb -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/proftmb/usr/lib/perl5 debian/proftmb/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/proftmb/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/proftmb/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip -O--parallel dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given strip --remove-section=.comment --remove-section=.note debian/proftmb/usr/bin/proftmb dh_makeshlibs -O--parallel rm -f debian/proftmb/DEBIAN/shlibs dh_shlibdeps -O--parallel dpkg-shlibdeps -Tdebian/proftmb.substvars debian/proftmb/usr/bin/proftmb dpkg-shlibdeps: warning: dependency on libgslcblas.so.0 could be avoided if "debian/proftmb/usr/bin/proftmb" were not uselessly linked against it (they use none of its symbols). dh_installdeb -O--parallel dh_gencontrol -O--parallel echo misc:Depends= >> debian/proftmb.substvars dpkg-gencontrol -ldebian/changelog -Tdebian/proftmb.substvars -Pdebian/proftmb chmod 644 debian/proftmb/DEBIAN/control chown 0:0 debian/proftmb/DEBIAN/control dh_md5sums -O--parallel (cd debian/proftmb >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/proftmb/DEBIAN/md5sums chown 0:0 debian/proftmb/DEBIAN/md5sums dh_builddeb -O--parallel dpkg-deb --build debian/proftmb .. INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `proftmb' in `../proftmb_1.1.10-1_i386.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../proftmb_1.1.10-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build proftmb-1.1.10 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120821-0538 chroot-autobuild/build/buildd/proftmb_1.1.10-1_i386.deb: new debian package, version 2.0. size 454466 bytes: control archive= 1753 bytes. 762 bytes, 18 lines control 2579 bytes, 36 lines md5sums Package: proftmb Version: 1.1.10-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 847 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgsl0ldbl (>= 1.9), libstdc++6 (>= 4.4.0) Recommends: pp-popularity-contest Section: science Priority: extra Homepage: http://rostlab.org/ Description: per-residue prediction of bacterial transmembrane beta barrels proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. . For each query protein, proftmb provides both a Z-value indicating that the protein actually contains a membrane barrel, and a four-state per-residue labeling of upward- and downward-facing strands, periplasmic hairpins and extracellular loops. chroot-autobuild/build/buildd/proftmb_1.1.10-1_i386.deb: drwxr-xr-x root/root 0 2012-08-21 05:38 ./ drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/ drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/bin/ -rwxr-xr-x root/root 399424 2012-08-21 05:38 ./usr/bin/proftmb drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/ drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/man/man1/ -rw-r--r-- root/root 1874 2012-08-21 05:38 ./usr/share/man/man1/proftmb.1.gz drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/proftmb/ -rw-r--r-- root/root 1616 2012-08-21 05:38 ./usr/share/proftmb/options -rw-r--r-- root/root 321 2012-08-21 05:38 ./usr/share/proftmb/StateRedux4 -rw-r--r-- root/root 359 2012-08-21 05:38 ./usr/share/proftmb/NCBIGnegComp -rw-r--r-- root/root 10931 2012-08-21 05:38 ./usr/share/proftmb/Makefile.in -rw-r--r-- root/root 18149 2012-08-21 05:38 ./usr/share/proftmb/ModelArchitecture -rw-r--r-- root/root 19278 2012-08-21 05:38 ./usr/share/proftmb/Swiss8.params -rw-r--r-- root/root 18772 2012-08-21 05:38 ./usr/share/proftmb/TrainedParams -rw-r--r-- root/root 17990 2012-08-21 05:38 ./usr/share/proftmb/Swiss8.arch -rw-r--r-- root/root 174 2012-08-21 05:38 ./usr/share/proftmb/Makefile.am -rw-r--r-- root/root 21661 2012-08-21 05:38 ./usr/share/proftmb/Swiss_Zcurve -rw-r--r-- root/root 11820 2012-08-21 05:38 ./usr/share/proftmb/Makefile -rw-r--r-- root/root 2147 2012-08-21 05:38 ./usr/share/proftmb/proftmb.opt -rw-r--r-- root/root 4 2012-08-21 05:38 ./usr/share/proftmb/StrandStates -rw-r--r-- root/root 56 2012-08-21 05:38 ./usr/share/proftmb/ReduxDecode4 -rw-r--r-- root/root 44217 2012-08-21 05:38 ./usr/share/proftmb/ZCalibration -rw-r--r-- root/root 279 2012-08-21 05:38 ./usr/share/proftmb/bact.comp drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/doc/proftmb/ drwxr-xr-x root/root 0 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/ -rw-r--r-- root/root 468 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/example_proftmb_tabular.txt -rw-r--r-- root/root 6375 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1qjp_A.f.8.Q.gz -rw-r--r-- root/root 8625 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1qd5_A.f.6.Q.gz -rw-r--r-- root/root 2670 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/16761001.Q -rw-r--r-- root/root 5109 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1qj9_A.f.7.Q.gz -rw-r--r-- root/root 753 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/example_proftmb_pretty.txt -rw-r--r-- root/root 5947 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1prn.f.5.Q.gz -rw-r--r-- root/root 4491 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/YQIB_ECOLI.Q.gz -rw-r--r-- root/root 14248 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1a0s_P.f.1.Q.gz -rw-r--r-- root/root 14203 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1af6_A.f.2.Q.gz -rw-r--r-- root/root 1609 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/example_dat.txt.gz -rw-r--r-- root/root 26954 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1fep_A.f.4.Q.gz -rw-r--r-- root/root 28389 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/example.Q -rw-r--r-- root/root 12470 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/1bt9_A.f.3.Q.gz -rw-r--r-- root/root 114650 2012-08-21 05:38 ./usr/share/doc/proftmb/examples/CADN_HUMAN.Q.gz -rw-r--r-- root/root 1162 2012-08-17 15:04 ./usr/share/doc/proftmb/copyright -rw-r--r-- root/root 217 2012-08-17 15:04 ./usr/share/doc/proftmb/changelog.Debian.gz -rw-r--r-- root/root 4037 2012-08-21 05:38 ./usr/share/doc/proftmb/README proftmb_1.1.10-1_i386.changes: Format: 1.8 Date: Mon, 20 Feb 2012 17:27:43 +0100 Source: proftmb Binary: proftmb Architecture: i386 Version: 1.1.10-1 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Laszlo Kajan Description: proftmb - per-residue prediction of bacterial transmembrane beta barrels Changes: proftmb (1.1.10-1) unstable; urgency=low . * New upstream release Checksums-Sha1: 97e40f26f412df4bac40fc17157fd29d2aa91bed 454466 proftmb_1.1.10-1_i386.deb Checksums-Sha256: c9a67c1cb33f8da38fb5b6fc86441efec588787a63db622e111bf425d13835a2 454466 proftmb_1.1.10-1_i386.deb Files: 9a0aaff3c15b18b02e0ca37c14e1a5bb 454466 science extra proftmb_1.1.10-1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120821-0538 Build needed 00:00:34, 5884k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '750d77cd6c0b53cfac9589fd1309276858eb7a7d'] Scanning for processes to kill in build /home/buildd/build-750d77cd6c0b53cfac9589fd1309276858eb7a7d/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '750d77cd6c0b53cfac9589fd1309276858eb7a7d'] Unmounting chroot for build 750d77cd6c0b53cfac9589fd1309276858eb7a7d... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '750d77cd6c0b53cfac9589fd1309276858eb7a7d'] Removing build 750d77cd6c0b53cfac9589fd1309276858eb7a7d