RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 21 Aug 17:03:01 ntpdate[3401]: step time server 10.211.37.1 offset -41178.075050 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'c77827fa275e28356846cd48d138d727b7936305', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build c77827fa275e28356846cd48d138d727b7936305 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'c77827fa275e28356846cd48d138d727b7936305'] Mounting chroot for build c77827fa275e28356846cd48d138d727b7936305 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'c77827fa275e28356846cd48d138d727b7936305', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-c77827fa275e28356846cd48d138d727b7936305 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'c77827fa275e28356846cd48d138d727b7936305', 'i386'] Updating debian chroot for build c77827fa275e28356846cd48d138d727b7936305 Ign http://ppa.launchpad.net precise InRelease Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ppa.launchpad.net precise Release.gpg [316 B] Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:4 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:5 http://ppa.launchpad.net precise Release [11.9 kB] Get:6 http://ftpmaster.internal precise Release [49.6 kB] Ign http://ppa.launchpad.net precise Release Get:7 http://ppa.launchpad.net precise/main i386 Packages [9581 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Get:8 http://ftpmaster.internal precise-security Release [49.6 kB] Ign http://ppa.launchpad.net precise/main Translation-en Get:9 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:10 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [161 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [40.8 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [376 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [124 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9672 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.3 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.0 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [74.0 kB] Fetched 11.6 MB in 10s (1111 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 16s (1195 kB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 21 05:40:02 UTC 2012. Universal Time is now: Tue Aug 21 05:40:02 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'c77827fa275e28356846cd48d138d727b7936305', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'profphd_1.0.39-1.dsc'] Initiating build c77827fa275e28356846cd48d138d727b7936305 with 2 jobs across 2 processor cores. Automatic build of profphd_1.0.39-1 on actinium by sbuild/i386 1.170.5 Build started at 20120821-0540 ****************************************************************************** profphd_1.0.39-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 7.0.50~), perl, rsync Checking for already installed source dependencies... cdbs: missing debhelper: missing perl: already installed (5.14.2-6ubuntu2.1) rsync: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper rsync Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-apparmor dh-translations file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpopt0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-scour python2.7 Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc openssh-client openssh-server Recommended packages: curl wget lynx-cur libio-socket-inet6-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-apparmor dh-translations file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpopt0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-scour python2.7 rsync 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 11.8 MB of archives. After this operation, 37.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpopt0 libpipeline1 libxml2 libcroco3 libexpat1 libunistring0 libgettextpo0 libmagic1 file mime-support netbase python2.7 python bsdmainutils gettext-base groff-base man-db rsync m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf dh-apparmor debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-http-perl libnet-ssleay-perl libio-socket-ssl-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 i386 1.16-3ubuntu1 [29.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1 i386 2.0.1-7.2ubuntu1.1 [130 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main netbase all 4.47ubuntu1 [15.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7 i386 2.7.3-0ubuntu3.1 [2652 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main python i386 2.7.3-0ubuntu2 [166 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main rsync i386 3.0.9-1ubuntu1 [299 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main m4 i386 1.4.16-2ubuntu1 [195 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main autoconf all 2.68-1ubuntu2 [560 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main automake all 1:1.11.3-1ubuntu2 [571 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:28 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main liburi-perl all 1.59-1 [90.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libencode-locale-perl all 1.02-2 [12.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libhttp-date-perl all 6.00-1 [10.1 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libfile-listing-perl all 6.03-1 [9690 B] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libhtml-parser-perl i386 3.69-1build1 [99.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tree-perl all 4.2-1 [205 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main liblwp-mediatypes-perl all 6.01-1 [17.5 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libhttp-message-perl all 6.01-1 [77.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libnet-http-perl all 6.02-1 [23.5 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libnet-ssleay-perl i386 1.42-1build1 [184 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libio-socket-ssl-perl all 1.53-1 [47.5 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main liblwp-protocol-https-perl all 6.02-1 [6746 B] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libwww-perl all 6.03-1 [156 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libxml-parser-perl i386 2.41-1build1 [264 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main intltool all 0.50.2-2 [52.0 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main dh-translations all 116 [21.6 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main python-scour all 0.26-3 [46.5 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main cdbs all 0.4.100ubuntu2 [47.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.8 MB in 5s (2201 kB/s) Selecting previously unselected package libpopt0. (Reading database ... 12283 files and directories currently installed.) Unpacking libpopt0 (from .../libpopt0_1.16-3ubuntu1_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2ubuntu1.1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... 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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.59-1_all.deb) ... Selecting previously unselected package libencode-locale-perl. Unpacking libencode-locale-perl (from .../libencode-locale-perl_1.02-2_all.deb) ... Selecting previously unselected package libhttp-date-perl. Unpacking libhttp-date-perl (from .../libhttp-date-perl_6.00-1_all.deb) ... Selecting previously unselected package libfile-listing-perl. 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Unpacking libwww-perl (from .../libwww-perl_6.03-1_all.deb) ... Selecting previously unselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.41-1build1_i386.deb) ... Selecting previously unselected package intltool. Unpacking intltool (from .../intltool_0.50.2-2_all.deb) ... Selecting previously unselected package dh-translations. Unpacking dh-translations (from .../dh-translations_116_all.deb) ... Selecting previously unselected package python-scour. Unpacking python-scour (from .../python-scour_0.26-3_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.100ubuntu2_all.deb) ... Setting up libpopt0 (1.16-3ubuntu1) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libexpat1 (2.0.1-7.2ubuntu1.1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up netbase (4.47ubuntu1) ... Setting up python2.7 (2.7.3-0ubuntu3.1) ... Setting up python (2.7.3-0ubuntu2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up rsync (3.0.9-1ubuntu1) ... Removing any system startup links for /etc/init.d/rsync ... invoke-rc.d: policy-rc.d denied execution of restart. Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20120210.1ubuntu1) ... Setting up automake (1:1.11.3-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up liburi-perl (1.59-1) ... Setting up libencode-locale-perl (1.02-2) ... Setting up libhttp-date-perl (6.00-1) ... Setting up libfile-listing-perl (6.03-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-1build1) ... Setting up libhtml-tree-perl (4.2-1) ... Setting up liblwp-mediatypes-perl (6.01-1) ... Setting up libhttp-message-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-http-perl (6.02-1) ... Setting up libnet-ssleay-perl (1.42-1build1) ... Setting up libio-socket-ssl-perl (1.53-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3) ... Setting up liblwp-protocol-https-perl (6.02-1) ... Setting up libwww-perl (6.03-1) ... Setting up libxml-parser-perl (2.41-1build1) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (116) ... Setting up cdbs (0.4.100ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Aug 17 15:04:42 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./profphd_1.0.39-1.dsc dpkg-source: info: extracting profphd in profphd-1.0.39 dpkg-source: info: unpacking profphd_1.0.39.orig.tar.xz dpkg-source: info: unpacking profphd_1.0.39-1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package profphd dpkg-buildpackage: source version 1.0.39-1 dpkg-source --before-build profphd-1.0.39 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" -k clean make[1]: Entering directory `/build/buildd/profphd-1.0.39' rm -f prof.tar *.[1-9] *.[1-9].gz /usr/bin/make -C src/prof clean make[2]: Entering directory `/build/buildd/profphd-1.0.39/src/prof' \rm -f *.[1-9] make[2]: Leaving directory `/build/buildd/profphd-1.0.39/src/prof' make[1]: Leaving directory `/build/buildd/profphd-1.0.39' dh_clean debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" prefix=/usr all make[1]: Entering directory `/build/buildd/profphd-1.0.39' /usr/bin/make -C src/prof make[2]: Entering directory `/build/buildd/profphd-1.0.39/src/prof' sed -e 's|__pkgdatadir__|/usr/share/profphd|g;s|__sysconfdir__||g;s|__bindir__|/usr/bin|g;s|__VERSION__|1.0.39|g;s|__PREFIX__|/usr|g;' "prof" | \ pod2man -c 'User Commands' -r "1.0.39" -name PROF > "prof.1" make[2]: Leaving directory `/build/buildd/profphd-1.0.39/src/prof' make[1]: Leaving directory `/build/buildd/profphd-1.0.39' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" prefix=/usr DESTDIR=/build/buildd/profphd-1.0.39/debian/tmp/ install make[1]: Entering directory `/build/buildd/profphd-1.0.39' /usr/bin/make -C src/prof install-man make[2]: Entering directory `/build/buildd/profphd-1.0.39/src/prof' mkdir -p /build/buildd/profphd-1.0.39/debian/tmp//usr/share/man/man1 && cp -a prof.1 /build/buildd/profphd-1.0.39/debian/tmp//usr/share/man/man1/ make[2]: Leaving directory `/build/buildd/profphd-1.0.39/src/prof' /usr/bin/make -C src/prof install-perl make[2]: Entering directory `/build/buildd/profphd-1.0.39/src/prof' mkdir -p /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof && rsync -aC \ --exclude /bin \ --exclude /embl/para \ --exclude /embl/net \ --exclude /exa/DMD_HUMAN.hssp.gz \ --exclude /net \ --exclude /Makefile \ --exclude /prof.1 \ --exclude Session.vim \ --exclude '.*.swp' \ ./. /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/. find /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/embl/phd.pl /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/scr/CONFprof.pl /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/prof /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/scr/lib/prof.pm \ -type f -exec sed -i -e 's|__PREFIX__|/usr|g;s|__VERSION__|1.0.39|;' {} \; rm -rf /build/buildd/profphd-1.0.39/debian/tmp//usr/bin/prof && mkdir -p /build/buildd/profphd-1.0.39/debian/tmp//usr/bin && ln -s ../share/profphd/prof/prof /build/buildd/profphd-1.0.39/debian/tmp//usr/bin/prof make[2]: Leaving directory `/build/buildd/profphd-1.0.39/src/prof' /usr/bin/make -C src/prof install-neuralnet make[2]: Entering directory `/build/buildd/profphd-1.0.39/src/prof' mkdir -p /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/embl/para && rsync -aC \ ./embl/para/. /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/embl/para/. mkdir -p /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/embl/net && rsync -aC \ ./embl/net/. /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/embl/net/. mkdir -p /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/net && rsync -aC \ ./net/. /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/net/. find /build/buildd/profphd-1.0.39/debian/tmp//usr/share/profphd/prof/embl/para -maxdepth 1 -name '*.com' -type f -exec sed -i -e 's|__PREFIX__|/usr|g' {} \; make[2]: Leaving directory `/build/buildd/profphd-1.0.39/src/prof' make[1]: Leaving directory `/build/buildd/profphd-1.0.39' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/profphd.substvars dh_installdirs -pprofphd dh_installdocs -pprofphd ./README ./AUTHORS dh_installexamples -pprofphd dh_installman -pprofphd dh_installinfo -pprofphd dh_installmenu -pprofphd dh_installcron -pprofphd dh_installinit -pprofphd dh_installdebconf -pprofphd dh_installemacsen -pprofphd dh_installcatalogs -pprofphd dh_installpam -pprofphd dh_installlogrotate -pprofphd dh_installlogcheck -pprofphd dh_installchangelogs -pprofphd ./ChangeLog dh_installudev -pprofphd dh_lintian -pprofphd dh_bugfiles -pprofphd dh_install -pprofphd dh_link -pprofphd dh_installmime -pprofphd dh_installgsettings -pprofphd dh_strip -pprofphd dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_compress -pprofphd dh_fixperms -pprofphd dh_makeshlibs -pprofphd dh_installdeb -pprofphd dh_perl -pprofphd dh_shlibdeps -pprofphd dh_gencontrol -pprofphd # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pprofphd ; fi dh_md5sums -pprofphd dh_builddeb -pprofphd INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `profphd' in `../profphd_1.0.39-1_all.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../profphd_1.0.39-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build profphd-1.0.39 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120821-0541 chroot-autobuild/build/buildd/profphd_1.0.39-1_all.deb: new debian package, version 2.0. size 6388786 bytes: control archive= 12528 bytes. 1301 bytes, 30 lines control 38626 bytes, 448 lines md5sums Package: profphd Version: 1.0.39-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 26088 Depends: perl, librg-utils-perl (>= 1.0.16), profnet-prof, profphd-utils, profphd-net Recommends: pp-popularity-contest Conflicts: profphd-data, profphd-perl Replaces: profphd-data, profphd-perl Section: science Priority: extra Homepage: http://predictprotein.org/ Description: secondary structure and solvent accessibility predictor This package provides prof(1), the protein secondary structure, accessibility and transmembrane helix predictor from Burkhard Rost. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance. . How well does prof(1) perform? . * Secondary structure is predicted at an expected average accuracy > 72% for the three states helix, strand and loop. . * Solvent accessibility is predicted at a correlation coefficient (correlation between experimentally observed and predicted relative solvent accessibility) of 0.54 . * Transmembrane helix prediction has an expected per-residue accuracy of about 95%. The number of false positives, i.e., transmembrane helices predicted in globular proteins, is about 2%. chroot-autobuild/build/buildd/profphd_1.0.39-1_all.deb: drwxr-xr-x root/root 0 2012-08-21 05:41 ./ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/profphd/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/net/ -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17buall.par -rw-r--r-- root/root 360622 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp3_13uall.jct -rw-r--r-- root/root 360622 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp3_13ball.jct -rw-r--r-- root/root 90267 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21uball.jct -rw-r--r-- root/root 90267 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21uuall.jct -rw-r--r-- root/root 1997 2009-08-18 09:06 ./usr/share/profphd/prof/net/SEChssp3_21u.par -rw-r--r-- root/root 76071 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17buall.jct -rw-r--r-- root/root 260412 2009-04-16 15:03 ./usr/share/profphd/prof/net/HTMhssp1_21ball.jct -rw-r--r-- root/root 221704 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp1_13ball.jct -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17uball.par -rw-r--r-- root/root 2058 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFsec_best.par -rw-r--r-- root/root 342475 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp3_13bsumh.jct -rw-r--r-- root/root 207219 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp1_13usumh.jct -rw-r--r-- root/root 1347 2009-04-16 15:03 ./usr/share/profphd/prof/net/PROFsec_good.par -rw-r--r-- root/root 76072 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17bball.jct -rw-r--r-- root/root 450471 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp3_17u.jct -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21bball.par -rw-r--r-- root/root 1997 2009-08-18 09:06 ./usr/share/profphd/prof/net/SEChssp3_21b.par -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17bball.par -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21uuall.par -rw-r--r-- root/root 1779 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFacc_fast.par -rw-r--r-- root/root 197469 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp1_17ball.jct -rw-r--r-- root/root 90267 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21bball.jct -rw-r--r-- root/root 1394 2009-04-16 15:03 ./usr/share/profphd/prof/net/PROFacc_good.par -rw-r--r-- root/root 342475 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp3_13usumh.jct -rw-r--r-- root/root 221704 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp1_13uall.jct -rw-r--r-- root/root 545208 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp3_21b.jct -rw-r--r-- root/root 76071 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17uuall.jct -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21uball.par -rw-r--r-- root/root 197449 2009-04-16 15:03 ./usr/share/profphd/prof/net/PROFsec_tst.jct -rw-r--r-- root/root 221704 2009-04-16 15:03 ./usr/share/profphd/prof/net/PROFacc_tst.jct -rw-r--r-- root/root 260358 2009-04-16 15:03 ./usr/share/profphd/prof/net/HTMhssp1_21uall.jct -rw-r--r-- root/root 1022 2009-08-18 09:06 ./usr/share/profphd/prof/net/SEChssp2_17uuall.par -rw-r--r-- root/root 450471 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp3_17b.jct -rw-r--r-- root/root 2189 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFboth_fast.par -rw-r--r-- root/root 2190 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFboth_tst.par -rw-r--r-- root/root 197449 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp1_17uall.jct -rw-r--r-- root/root 2350 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFboth_good.par -rw-r--r-- root/root 1013 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21buall.par -rw-r--r-- root/root 545208 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp3_21u.jct -rw-r--r-- root/root 239998 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp1_21uall.jct -rw-r--r-- root/root 207219 2009-04-16 15:03 ./usr/share/profphd/prof/net/ACChssp1_13bsumh.jct -rw-r--r-- root/root 2174 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFacc_best.par -rw-r--r-- root/root 239998 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp1_21ball.jct -rw-r--r-- root/root 1015 2009-04-16 15:03 ./usr/share/profphd/prof/net/PROFsec_fast.par -rw-r--r-- root/root 2343 2009-08-18 09:06 ./usr/share/profphd/prof/net/PROFboth_best.par -rw-r--r-- root/root 76071 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_17uball.jct -rw-r--r-- root/root 90267 2009-04-16 15:03 ./usr/share/profphd/prof/net/SEChssp2_21buall.jct -rwxr-xr-x root/root 17986 2012-08-21 05:41 ./usr/share/profphd/prof/prof drwxr-xr-x root/root 0 2010-01-16 10:04 ./usr/share/profphd/prof/pub/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/embl/ drwxr-xr-x root/root 0 2010-01-05 17:33 ./usr/share/profphd/prof/embl/net/ -rw-r--r-- root/root 43310 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/Exp252x-w9-15rcicld-A1.DAT -rw-r--r-- root/root 56050 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/Exp152x-15rcic.DAT -rw-r--r-- root/root 57860 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/Exp317x-15rcicld.DAT -rw-r--r-- root/root 53914 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/Exp317x-15rccld.DAT -rw-r--r-- root/root 53920 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/Exp152x-15rccld.DAT -rw-r--r-- root/root 92728 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/S317x-rc-pcicld.DAT -rw-r--r-- root/root 56043 2009-04-16 15:03 ./usr/share/profphd/prof/embl/net/Exp252x-15rcic-A1.DAT -rw-r--r-- root/root 114999 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root/root 3449 2009-04-16 15:03 ./usr/share/profphd/prof/exa/8rnt.msf -rw-r--r-- root/root 3812 2009-08-18 09:06 ./usr/share/profphd/prof/exa/2ppt.rdbProfSec -rw-r--r-- root/root 21342 2009-08-18 09:06 ./usr/share/profphd/prof/exa/9rnt.profSec -rw-r--r-- root/root 4369 2009-08-18 09:06 ./usr/share/profphd/prof/exa/paho_chick.rdbProfSec -rw-r--r-- root/root 27514 2009-08-18 09:06 ./usr/share/profphd/prof/exa/8rnt_prof.html drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/scr/ -rwxr-xr-x root/root 1710 2011-06-21 17:38 ./usr/share/profphd/prof/scr/tlprof_htmtop.pl -rwxr-xr-x root/root 20311 2011-09-27 16:59 ./usr/share/profphd/prof/scr/conv_prof2hssp.pl -rwxr-xr-x root/root 6912 2011-09-28 12:39 ./usr/share/profphd/prof/scr/tlprof_blastmat2hssp.pl -rwxr-xr-x root/root 1985 2011-06-21 17:38 ./usr/share/profphd/prof/scr/tlprof_htmfil.pl -rwxr-xr-x root/root 31585 2011-09-28 12:39 ./usr/share/profphd/prof/scr/tlprof_jury.pl -rwxr-xr-x root/root 101743 2011-09-28 12:40 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2009-04-16 15:03 ./usr/share/profphd/prof/mat/Maxhom_GCG.metric -rw-r--r-- root/root 3726 2009-04-16 15:03 ./usr/share/profphd/prof/mat/Maxhom_Sec_Struc.metric -rw-r--r-- root/root 4065 2009-04-16 15:03 ./usr/share/profphd/prof/mat/Maxhom_Blosum.metric -rw-r--r-- root/root 21174 2009-04-16 15:03 ./usr/share/profphd/prof/mat/Maxhom_Struc_IO.metric -rw-r--r-- root/root 3902 2009-04-16 15:03 ./usr/share/profphd/prof/mat/Maxhom_McLachlan.metric drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/man/man1/ -rw-r--r-- root/root 6465 2012-08-21 05:41 ./usr/share/man/man1/prof.1.gz drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/share/doc/profphd/ -rw-r--r-- root/root 4710 2010-05-14 12:06 ./usr/share/doc/profphd/README.gz -rw-r--r-- root/root 668 2012-08-17 15:04 ./usr/share/doc/profphd/README.Debian -rw-r--r-- root/root 2754 2012-08-17 15:04 ./usr/share/doc/profphd/changelog.Debian.gz -rw-r--r-- root/root 1733 2012-08-17 15:04 ./usr/share/doc/profphd/copyright -rw-r--r-- root/root 409 2012-08-14 17:43 ./usr/share/doc/profphd/changelog.gz -rw-r--r-- root/root 565 2011-06-20 16:27 ./usr/share/doc/profphd/AUTHORS drwxr-xr-x root/root 0 2012-08-21 05:41 ./usr/bin/ lrwxrwxrwx root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/net/PROFsec.par -> PROFsec_best.par lrwxrwxrwx root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/net/PROFacc.par -> PROFacc_best.par lrwxrwxrwx root/root 0 2012-08-21 05:41 ./usr/share/profphd/prof/net/PROFboth.par -> PROFboth_best.par lrwxrwxrwx root/root 0 2012-08-21 05:41 ./usr/bin/prof -> ../share/profphd/prof/prof profphd_1.0.39-1_i386.changes: Format: 1.8 Date: Tue, 14 Aug 2012 19:50:34 +0200 Source: profphd Binary: profphd Architecture: all Version: 1.0.39-1 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Laszlo Kajan Description: profphd - secondary structure and solvent accessibility predictor Closes: 684857 Changes: profphd (1.0.39-1) unstable; urgency=low . [ Andreas Tille ] * debian/upstream: Make author field BibTeX compliant . [ Laszlo Kajan ] * New upstream release. (Closes: #684857) Checksums-Sha1: 1ad1117684a535fd00727c70ff1f719758485329 6388786 profphd_1.0.39-1_all.deb Checksums-Sha256: bddc4e0399a8d36336bafaad7eadd2bc93ada10fef2444657176e18694a885e6 6388786 profphd_1.0.39-1_all.deb Files: 9ae2fbcad58ee0e6170706d78728fea7 6388786 science extra profphd_1.0.39-1_all.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120821-0541 Build needed 00:00:30, 89696k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'c77827fa275e28356846cd48d138d727b7936305'] Scanning for processes to kill in build /home/buildd/build-c77827fa275e28356846cd48d138d727b7936305/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'c77827fa275e28356846cd48d138d727b7936305'] Unmounting chroot for build c77827fa275e28356846cd48d138d727b7936305... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'c77827fa275e28356846cd48d138d727b7936305'] Removing build c77827fa275e28356846cd48d138d727b7936305