RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 25 Aug 00:44:51 ntpdate[3404]: step time server 10.211.37.1 offset -327313.435660 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'c0d743930920c387ddaba9749a759f506482a1e8', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build c0d743930920c387ddaba9749a759f506482a1e8 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'c0d743930920c387ddaba9749a759f506482a1e8'] Mounting chroot for build c0d743930920c387ddaba9749a759f506482a1e8 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'c0d743930920c387ddaba9749a759f506482a1e8', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-c0d743930920c387ddaba9749a759f506482a1e8 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'c0d743930920c387ddaba9749a759f506482a1e8', 'i386'] Updating debian chroot for build c0d743930920c387ddaba9749a759f506482a1e8 Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Ign http://ppa.launchpad.net precise InRelease Get:1 http://ppa.launchpad.net precise Release.gpg [316 B] Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:4 http://ppa.launchpad.net precise Release [11.9 kB] Get:5 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:6 http://ftpmaster.internal precise Release [49.6 kB] Ign http://ppa.launchpad.net precise Release Get:7 http://ppa.launchpad.net precise/main i386 Packages [9805 B] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:8 http://ftpmaster.internal precise-security Release [49.6 kB] Get:9 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:10 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [161 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [40.8 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [376 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [124 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9672 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.3 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.0 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [74.0 kB] Fetched 11.6 MB in 13s (851 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 11s (1638 kB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 21 05:52:18 UTC 2012. Universal Time is now: Tue Aug 21 05:52:18 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'c0d743930920c387ddaba9749a759f506482a1e8', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'norsnet_1.0.16-1.dsc'] Initiating build c0d743930920c387ddaba9749a759f506482a1e8 with 2 jobs across 2 processor cores. Automatic build of norsnet_1.0.16-1 on iridium by sbuild/i386 1.170.5 Build started at 20120821-0552 ****************************************************************************** norsnet_1.0.16-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB of archives. After this operation, 17.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:17 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5687 kB in 3s (1786 kB/s) Selecting previously unselected package libpipeline1. (Reading database ... 12283 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Aug 17 15:11:53 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./norsnet_1.0.16-1.dsc dpkg-source: info: extracting norsnet in norsnet-1.0.16 dpkg-source: info: unpacking norsnet_1.0.16.orig.tar.gz dpkg-source: info: unpacking norsnet_1.0.16-1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package norsnet dpkg-buildpackage: source version 1.0.16-1 dpkg-source --before-build norsnet-1.0.16 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build dh build dh_testdir dh_auto_configure configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes configure: creating ./config.status config.status: creating Makefile config.status: creating scr/Makefile config.status: creating examples/Makefile configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking dh_auto_build make[1]: Entering directory `/build/buildd/norsnet-1.0.16' Making all in scr make[2]: Entering directory `/build/buildd/norsnet-1.0.16/scr' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/norsnet-1.0.16/scr' Making all in examples make[2]: Entering directory `/build/buildd/norsnet-1.0.16/examples' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/norsnet-1.0.16/examples' make[2]: Entering directory `/build/buildd/norsnet-1.0.16' sed -e 's|__docdir__|/usr/share/doc/norsnet|g;s|__datadir__|/usr/share|g;s|__pkgdatadir__|/usr/share/norsnet|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;' "norsnet.pod.in" > "norsnet.pod" pod2man -c 'User Commands' -r "1.0.16" norsnet.pod norsnet.1 make[2]: Leaving directory `/build/buildd/norsnet-1.0.16' make[1]: Leaving directory `/build/buildd/norsnet-1.0.16' dh_auto_test make[1]: Entering directory `/build/buildd/norsnet-1.0.16' Making check in scr make[2]: Entering directory `/build/buildd/norsnet-1.0.16/scr' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/norsnet-1.0.16/scr' Making check in examples make[2]: Entering directory `/build/buildd/norsnet-1.0.16/examples' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/norsnet-1.0.16/examples' make[2]: Entering directory `/build/buildd/norsnet-1.0.16' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/norsnet-1.0.16' make[1]: Leaving directory `/build/buildd/norsnet-1.0.16' /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install make[1]: Entering directory `/build/buildd/norsnet-1.0.16' Making install in scr make[2]: Entering directory `/build/buildd/norsnet-1.0.16/scr' make[3]: Entering directory `/build/buildd/norsnet-1.0.16/scr' make[3]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/norsnet/scr' /usr/bin/install -c -m 644 ./createDataFile.pl ./jct50-short ./NORSnet.pl '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/norsnet/scr' make install-data-hook make[4]: Entering directory `/build/buildd/norsnet-1.0.16/scr' chmod +x /build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/norsnet/scr/createDataFile.pl /build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/norsnet/scr/NORSnet.pl make[4]: Leaving directory `/build/buildd/norsnet-1.0.16/scr' make[3]: Leaving directory `/build/buildd/norsnet-1.0.16/scr' make[2]: Leaving directory `/build/buildd/norsnet-1.0.16/scr' Making install in examples make[2]: Entering directory `/build/buildd/norsnet-1.0.16/examples' make[3]: Entering directory `/build/buildd/norsnet-1.0.16/examples' make[3]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/doc/norsnet/examples' /usr/bin/install -c -m 644 ./cad23-fil.hssp ./cad23-fil.rdbProf ./cad23.f ./cad23.norsnet ./cad23.profbval '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/doc/norsnet/examples' make[3]: Leaving directory `/build/buildd/norsnet-1.0.16/examples' make[2]: Leaving directory `/build/buildd/norsnet-1.0.16/examples' make[2]: Entering directory `/build/buildd/norsnet-1.0.16' make[3]: Entering directory `/build/buildd/norsnet-1.0.16' /bin/mkdir -p '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/bin' /usr/bin/install -c norsnet '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/bin' make install-exec-hook make[4]: Entering directory `/build/buildd/norsnet-1.0.16' sed -i -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/norsnet|g;s|__pkgdatadir__|/usr/share/norsnet|g;s|__sysconfdir__|/etc|g;' "/build/buildd/norsnet-1.0.16/debian/norsnet/usr/bin/norsnet" make[4]: Leaving directory `/build/buildd/norsnet-1.0.16' /bin/mkdir -p '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/man/man1' /usr/bin/install -c -m 644 norsnet.1 '/build/buildd/norsnet-1.0.16/debian/norsnet/usr/share/man/man1' make install-data-hook make[4]: Entering directory `/build/buildd/norsnet-1.0.16' make[4]: Nothing to be done for `install-data-hook'. make[4]: Leaving directory `/build/buildd/norsnet-1.0.16' make[3]: Leaving directory `/build/buildd/norsnet-1.0.16' make[2]: Leaving directory `/build/buildd/norsnet-1.0.16' make[1]: Leaving directory `/build/buildd/norsnet-1.0.16' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/norsnet-1.0.16' dh_compress -Xexamples/cad23.f -Xexamples/cad23-fil.rdbProf -Xexamples/cad23-fil.hssp -Xexamples/cad23.profbval make[1]: Leaving directory `/build/buildd/norsnet-1.0.16' dh_fixperms dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package norsnet: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: package norsnet: unused substitution variable ${perl:Depends} dh_md5sums dh_builddeb INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `norsnet' in `../norsnet_1.0.16-1_all.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../norsnet_1.0.16-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build norsnet-1.0.16 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120821-0552 chroot-autobuild/build/buildd/norsnet_1.0.16-1_all.deb: new debian package, version 2.0. size 55256 bytes: control archive= 1234 bytes. 1134 bytes, 25 lines control 865 bytes, 12 lines md5sums Package: norsnet Version: 1.0.16-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 235 Depends: profnet-norsnet Recommends: blast2, librg-utils-perl, pp-popularity-contest, profphd, profbval Section: science Priority: extra Homepage: https://www.rostlab.org/owiki/index.php/Norsnet Description: tool to identify unstructured loops in proteins NORSnet can distinguish between very long contiguous segments with non-regular secondary structure (NORS regions) and well-folded proteins. . NORSnet was trained on predicted information rather than on experimental data. This allows NORSnet to reach into regions in sequence space that are not covered by specialized disorder predictors. One disadvantage of this approach is that it is not optimal for the identification of the "average" disordered region. . NORSnet takes the following input, further described on norsnet(1): * a protein sequence in a FASTA file * secondary structure and solvent accessibility prediction by prof(1) * an HSSP file * flexible/rigid residues prediction by profbval(1) chroot-autobuild/build/buildd/norsnet_1.0.16-1_all.deb: drwxr-xr-x root/root 0 2012-08-21 05:52 ./ drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/ drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/ drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/man/man1/ -rw-r--r-- root/root 3778 2012-08-21 05:52 ./usr/share/man/man1/norsnet.1.gz drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/norsnet/ drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/norsnet/scr/ -rwxr-xr-x root/root 8288 2012-08-21 05:52 ./usr/share/norsnet/scr/createDataFile.pl -rw-r--r-- root/root 22592 2012-08-21 05:52 ./usr/share/norsnet/scr/jct50-short -rwxr-xr-x root/root 20351 2012-08-21 05:52 ./usr/share/norsnet/scr/NORSnet.pl drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/doc/norsnet/ -rw-r--r-- root/root 706 2012-08-17 15:11 ./usr/share/doc/norsnet/changelog.Debian.gz -rw-r--r-- root/root 2435 2012-08-17 15:11 ./usr/share/doc/norsnet/copyright drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/share/doc/norsnet/examples/ -rw-r--r-- root/root 7508 2012-08-21 05:52 ./usr/share/doc/norsnet/examples/cad23.profbval -rw-r--r-- root/root 37299 2012-08-21 05:52 ./usr/share/doc/norsnet/examples/cad23-fil.rdbProf -rw-r--r-- root/root 84024 2012-08-21 05:52 ./usr/share/doc/norsnet/examples/cad23-fil.hssp -rw-r--r-- root/root 354 2012-08-21 05:52 ./usr/share/doc/norsnet/examples/cad23.f -rw-r--r-- root/root 2121 2012-08-21 05:52 ./usr/share/doc/norsnet/examples/cad23.norsnet.gz drwxr-xr-x root/root 0 2012-08-21 05:52 ./usr/bin/ -rwxr-xr-x root/root 1632 2012-08-21 05:52 ./usr/bin/norsnet norsnet_1.0.16-1_i386.changes: Format: 1.8 Date: Tue, 14 Aug 2012 13:44:17 +0200 Source: norsnet Binary: norsnet Architecture: all Version: 1.0.16-1 Distribution: precise Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Laszlo Kajan Description: norsnet - tool to identify unstructured loops in proteins Closes: 681108 Changes: norsnet (1.0.16-1) unstable; urgency=low . [ Christian Mertes ] * Packaged for Debian (Closes: #681108) Checksums-Sha1: efc09be3cda9eec3db42efde4f6da234451674ab 55256 norsnet_1.0.16-1_all.deb Checksums-Sha256: 880fc04b204d92202a1e69fdfe742c37e1d0b8889156ae8d6ceb1be12606245e 55256 norsnet_1.0.16-1_all.deb Files: 55e75856583b5d5ee8697464ba61473e 55256 science extra norsnet_1.0.16-1_all.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120821-0552 Build needed 00:00:07, 1036k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'c0d743930920c387ddaba9749a759f506482a1e8'] Scanning for processes to kill in build /home/buildd/build-c0d743930920c387ddaba9749a759f506482a1e8/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'c0d743930920c387ddaba9749a759f506482a1e8'] Unmounting chroot for build c0d743930920c387ddaba9749a759f506482a1e8... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'c0d743930920c387ddaba9749a759f506482a1e8'] Removing build c0d743930920c387ddaba9749a759f506482a1e8