RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 24 Aug 04:23:24 ntpdate[3408]: adjust time server 10.211.37.1 offset -0.000470 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '42d3a426e32031bb6bc7561498c95c302680c0fc', '/home/buildd/filecache-default/c021ff3d3373fb2201b3008c0ece6808393ff246'] Uncompressing the tarball... Unpacking chroot for build 42d3a426e32031bb6bc7561498c95c302680c0fc RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '42d3a426e32031bb6bc7561498c95c302680c0fc'] Mounting chroot for build 42d3a426e32031bb6bc7561498c95c302680c0fc RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '42d3a426e32031bb6bc7561498c95c302680c0fc', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-42d3a426e32031bb6bc7561498c95c302680c0fc RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '42d3a426e32031bb6bc7561498c95c302680c0fc', 'amd64'] Updating debian chroot for build 42d3a426e32031bb6bc7561498c95c302680c0fc Ign http://ppa.launchpad.net precise InRelease Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ppa.launchpad.net precise Release.gpg [316 B] Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:4 http://ppa.launchpad.net precise Release [11.9 kB] Get:5 http://ftpmaster.internal precise-updates Release.gpg [198 B] Ign http://ppa.launchpad.net precise Release Get:6 http://ppa.launchpad.net precise/main amd64 Packages [13.4 kB] Get:7 http://ftpmaster.internal precise Release [49.6 kB] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:8 http://ftpmaster.internal precise-security Release [49.6 kB] Get:9 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:10 http://ftpmaster.internal precise/main amd64 Packages [1273 kB] Get:11 http://ftpmaster.internal precise/restricted amd64 Packages [8452 B] Get:12 http://ftpmaster.internal precise/universe amd64 Packages [4786 kB] Get:13 http://ftpmaster.internal precise/multiverse amd64 Packages [119 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main amd64 Packages [157 kB] Get:19 http://ftpmaster.internal precise-security/restricted amd64 Packages [3969 B] Get:20 http://ftpmaster.internal precise-security/universe amd64 Packages [41.2 kB] Get:21 http://ftpmaster.internal precise-security/multiverse amd64 Packages [2180 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main amd64 Packages [374 kB] Get:27 http://ftpmaster.internal precise-updates/restricted amd64 Packages [6755 B] Get:28 http://ftpmaster.internal precise-updates/universe amd64 Packages [126 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse amd64 Packages [8677 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.6 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [75.6 kB] Fetched 11.6 MB in 5s (1987 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.0 MB of archives. After this operation, 37.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files amd64 6.5ubuntu6.2 [69.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl amd64 5.14.2-6ubuntu2.1 [4416 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base amd64 5.14.2-6ubuntu2.1 [1498 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 amd64 0.8.16~exp12ubuntu10.2 [932 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt amd64 0.8.16~exp12ubuntu10.2 [1092 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 amd64 1.0.1-4ubuntu5.3 [1011 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 amd64 3.7.9-2ubuntu1.1 [349 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 amd64 2.32.3-0ubuntu1 [1199 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 amd64 175-0ubuntu9.1 [30.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 amd64 1.5.0-3ubuntu0.1 [280 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 amd64 2.10-1ubuntu1.1 [43.3 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 amd64 2.12.14-5ubuntu3.1 [459 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 amd64 1.10+dfsg~beta1-2ubuntu0.3 [80.1 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 amd64 1.10+dfsg~beta1-2ubuntu0.3 [118 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 amd64 1.10+dfsg~beta1-2ubuntu0.3 [355 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 amd64 1.10+dfsg~beta1-2ubuntu0.3 [23.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 amd64 2.1.25.dfsg1-3ubuntu0.1 [69.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 amd64 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal amd64 2.7.3-0ubuntu3.1 [1741 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils amd64 2.88dsf-13.10ubuntu11.1 [60.2 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts amd64 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart amd64 1.5-0ubuntu7 [311 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev amd64 175-0ubuntu9.1 [323 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https amd64 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev amd64 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl amd64 1.0.1-4ubuntu5.3 [523 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.0 MB in 1s (18.9 MB/s) (Reading database ... 12243 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12243 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12243 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_amd64.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12243 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_amd64.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_amd64.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_amd64.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_amd64.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_amd64.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_amd64.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_amd64.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_amd64.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Aug 24 04:26:48 UTC 2012. Universal Time is now: Fri Aug 24 04:26:48 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12243 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_amd64.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_amd64.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_amd64.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_amd64.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_amd64.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '42d3a426e32031bb6bc7561498c95c302680c0fc', 'amd64', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PPA', '--architecture=amd64', '--comp=main', 'prank_0.0.120716-1ubuntu1.dsc'] Initiating build 42d3a426e32031bb6bc7561498c95c302680c0fc with 2 jobs across 2 processor cores. Automatic build of prank_0.0.120716-1ubuntu1 on louvi by sbuild/amd64 1.170.5 Build started at 20120824-0427 ****************************************************************************** prank_0.0.120716-1ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5823 kB of archives. After this operation, 18.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 amd64 1.2.1-1 [26.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 amd64 2.7.8.dfsg-5.1ubuntu4.1 [673 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 amd64 0.6.5-1 [99.3 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 amd64 0.9.3-5 [427 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 amd64 0.18.1.1-5ubuntu3 [120 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 amd64 5.09-2 [217 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main file amd64 5.09-2 [19.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils amd64 8.2.3ubuntu1 [200 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gettext-base amd64 0.18.1.1-5ubuntu3 [80.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main groff-base amd64 1.21-7 [1046 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main man-db amd64 2.6.1-2 [756 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main html2text amd64 1.3.2a-15 [104 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main gettext amd64 0.18.1.1-5ubuntu3 [1188 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:17 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5823 kB in 0s (12.9 MB/s) Selecting previously unselected package libpipeline1. (Reading database ... 12245 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Wed Aug 22 17:41:47 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./prank_0.0.120716-1ubuntu1.dsc dpkg-source: info: extracting prank in prank-0.0.120716 dpkg-source: info: unpacking prank_0.0.120716.orig.tar.gz dpkg-source: info: unpacking prank_0.0.120716-1ubuntu1.debian.tar.gz dpkg-source: info: applying build_on_32_bit.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package prank dpkg-buildpackage: source version 0.0.120716-1ubuntu1 dpkg-source --before-build prank-0.0.120716 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --sourcedirectory=src --parallel dh_testdir -O--sourcedirectory=src -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/prank-0.0.120716' # No distclean! See README.source ( cd src ; make clean ) make[2]: Entering directory `/build/buildd/prank-0.0.120716/src' rm -f writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o rm -f *~ core *.core make[2]: Leaving directory `/build/buildd/prank-0.0.120716/src' ( cd src ; rm -f prank prank.1 ) make[1]: Leaving directory `/build/buildd/prank-0.0.120716' dh_clean -O--sourcedirectory=src -O--parallel debian/rules build dh build --sourcedirectory=src --parallel dh_testdir -O--sourcedirectory=src -O--parallel dh_auto_configure -O--sourcedirectory=src -O--parallel debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/prank-0.0.120716' dh_auto_build --verbose cd src make -j2 make[2]: Entering directory `/build/buildd/prank-0.0.120716/src' g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o writefile.o writefile.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o treenode.o treenode.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o translatesequences.o translatesequences.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o terminalsequence.o terminalsequence.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o terminalnode.o terminalnode.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o site.o site.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o sequence.o sequence.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o readnewick.o readnewick.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o readfile.o readfile.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o readalignment.o readalignment.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o pwsite.o pwsite.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o prank.o prank.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o postprobability.o postprobability.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o node.o node.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o intmatrix.o intmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o hmmodel.o hmmodel.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o hirschberg.o hirschberg.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o guidetree.o guidetree.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o fullprobability.o fullprobability.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o flmatrix.o flmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o eigen.o eigen.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o characterprobability.o characterprobability.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o check_version.o check_version.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o mafft_alignment.o mafft_alignment.cpp pod2man --utf8 --center "The Probabilistic Alignment Kit" -release="v.120716" --section=1 --name="PRANK" prank.1.pod >prank.1 g++ -o prank writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o make[2]: Leaving directory `/build/buildd/prank-0.0.120716/src' cd /build/buildd/prank-0.0.120716 make[1]: Leaving directory `/build/buildd/prank-0.0.120716' dh_auto_test -O--sourcedirectory=src -O--parallel /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src --parallel dh_testroot -a -O--sourcedirectory=src -O--parallel dh_prep -a -O--sourcedirectory=src -O--parallel dh_installdirs -a -O--sourcedirectory=src -O--parallel dh_auto_install -a -O--sourcedirectory=src -O--parallel debian/rules override_dh_install make[1]: Entering directory `/build/buildd/prank-0.0.120716' dh_install src/prank /usr/bin dh_installman src/prank.1 make[1]: Leaving directory `/build/buildd/prank-0.0.120716' dh_installdocs -a -O--sourcedirectory=src -O--parallel dh_installchangelogs -a -O--sourcedirectory=src -O--parallel dh_installexamples -a -O--sourcedirectory=src -O--parallel dh_installman -a -O--sourcedirectory=src -O--parallel dh_installcatalogs -a -O--sourcedirectory=src -O--parallel dh_installcron -a -O--sourcedirectory=src -O--parallel dh_installdebconf -a -O--sourcedirectory=src -O--parallel dh_installemacsen -a -O--sourcedirectory=src -O--parallel dh_installifupdown -a -O--sourcedirectory=src -O--parallel dh_installinfo -a -O--sourcedirectory=src -O--parallel dh_installinit -a -O--sourcedirectory=src -O--parallel dh_installmenu -a -O--sourcedirectory=src -O--parallel dh_installmime -a -O--sourcedirectory=src -O--parallel dh_installmodules -a -O--sourcedirectory=src -O--parallel dh_installlogcheck -a -O--sourcedirectory=src -O--parallel dh_installlogrotate -a -O--sourcedirectory=src -O--parallel dh_installpam -a -O--sourcedirectory=src -O--parallel dh_installppp -a -O--sourcedirectory=src -O--parallel dh_installudev -a -O--sourcedirectory=src -O--parallel dh_installwm -a -O--sourcedirectory=src -O--parallel dh_installxfonts -a -O--sourcedirectory=src -O--parallel dh_installgsettings -a -O--sourcedirectory=src -O--parallel dh_bugfiles -a -O--sourcedirectory=src -O--parallel dh_ucf -a -O--sourcedirectory=src -O--parallel dh_lintian -a -O--sourcedirectory=src -O--parallel dh_gconf -a -O--sourcedirectory=src -O--parallel dh_icons -a -O--sourcedirectory=src -O--parallel dh_perl -a -O--sourcedirectory=src -O--parallel dh_usrlocal -a -O--sourcedirectory=src -O--parallel dh_link -a -O--sourcedirectory=src -O--parallel dh_compress -a -O--sourcedirectory=src -O--parallel dh_fixperms -a -O--sourcedirectory=src -O--parallel dh_strip -a -O--sourcedirectory=src -O--parallel dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs -a -O--sourcedirectory=src -O--parallel dh_shlibdeps -a -O--sourcedirectory=src -O--parallel dh_installdeb -a -O--sourcedirectory=src -O--parallel dh_gencontrol -a -O--sourcedirectory=src -O--parallel dh_md5sums -a -O--sourcedirectory=src -O--parallel dh_builddeb -a -O--sourcedirectory=src -O--parallel INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `prank' in `../prank_0.0.120716-1ubuntu1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../prank_0.0.120716-1ubuntu1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build prank-0.0.120716 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120824-0428 chroot-autobuild/build/buildd/prank_0.0.120716-1ubuntu1_amd64.deb: new debian package, version 2.0. size 352040 bytes: control archive= 1326 bytes. 1927 bytes, 37 lines control 250 bytes, 4 lines md5sums Package: prank Version: 0.0.120716-1ubuntu1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 868 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6) Enhances: t-coffee Section: non-free/science Priority: optional Homepage: http://www.ebi.ac.uk/goldman-srv/prank/ Description: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. . PRANK is a command-line program for Unix-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data. . PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods. chroot-autobuild/build/buildd/prank_0.0.120716-1ubuntu1_amd64.deb: drwxr-xr-x root/root 0 2012-08-24 04:28 ./ drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/ drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/bin/ -rwxr-xr-x root/root 847240 2012-08-24 04:28 ./usr/bin/prank drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/share/ drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2792 2012-08-24 04:28 ./usr/share/man/man1/prank.1.gz drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-24 04:28 ./usr/share/doc/prank/ -rw-r--r-- root/root 748 2012-08-20 14:37 ./usr/share/doc/prank/copyright -rw-r--r-- root/root 456 2012-08-22 17:38 ./usr/share/doc/prank/changelog.Debian.gz prank_0.0.120716-1ubuntu1_amd64.changes: Format: 1.8 Date: Wed, 22 Aug 2012 18:38:36 +0100 Source: prank Binary: prank Architecture: amd64 Version: 0.0.120716-1ubuntu1 Distribution: precise Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Tim Booth Description: prank - Probabilistic Alignment Kit for DNA, codon and amino-acid sequenc Changes: prank (0.0.120716-1ubuntu1) precise; urgency=low . * Files now on Google Code - edited watchfile * New upstream release * Code is now in src/ subdirectory * manpage patch has been incorporated in upstream, and I've added the cleanup fixes into /debian/rules, so there are now no patches * Prevent DH from doing QMake rebuild - see README.source for a justification * Fudge the Makefile to work on 32 or 64 bit Checksums-Sha1: 6072548610abe4b90144b6cdbb766e06fda06d94 352040 prank_0.0.120716-1ubuntu1_amd64.deb Checksums-Sha256: 19ee54bc5675bc1c63f6c0948a6726584e2e932e6022ef588d9eaf67431172d8 352040 prank_0.0.120716-1ubuntu1_amd64.deb Files: 1487ca1f4eca01c80123389698c49c97 352040 non-free/science optional prank_0.0.120716-1ubuntu1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120824-0428 Build needed 00:00:29, 27692k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '42d3a426e32031bb6bc7561498c95c302680c0fc'] Scanning for processes to kill in build /home/buildd/build-42d3a426e32031bb6bc7561498c95c302680c0fc/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '42d3a426e32031bb6bc7561498c95c302680c0fc'] Unmounting chroot for build 42d3a426e32031bb6bc7561498c95c302680c0fc... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '42d3a426e32031bb6bc7561498c95c302680c0fc'] Removing build 42d3a426e32031bb6bc7561498c95c302680c0fc