RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 26 Aug 16:49:48 ntpdate[3407]: step time server 10.211.37.1 offset -260876.857960 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build eac3e98e8d67183c10f2656afffe3dd44ba04fe6 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6'] Mounting chroot for build eac3e98e8d67183c10f2656afffe3dd44ba04fe6 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-eac3e98e8d67183c10f2656afffe3dd44ba04fe6 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6', 'i386'] Updating debian chroot for build eac3e98e8d67183c10f2656afffe3dd44ba04fe6 Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Ign http://ppa.launchpad.net precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Get:5 http://ppa.launchpad.net precise Release.gpg [316 B] Get:6 http://ppa.launchpad.net precise Release [11.9 kB] Get:7 http://ftpmaster.internal precise-security Release [49.6 kB] Ign http://ppa.launchpad.net precise Release Get:8 http://ppa.launchpad.net precise/main i386 Packages [12.5 kB] Ign http://ppa.launchpad.net precise/main TranslationIndex Get:9 http://ftpmaster.internal precise-updates Release [49.6 kB] Ign http://ppa.launchpad.net precise/main Translation-en Get:10 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [161 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [41.4 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [378 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [127 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9672 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.6 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [75.6 kB] Fetched 11.7 MB in 10s (1122 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 10s (1746 kB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Aug 23 16:24:33 UTC 2012. Universal Time is now: Thu Aug 23 16:24:33 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'prank_0.0.120716-1ubuntu1.dsc'] Initiating build eac3e98e8d67183c10f2656afffe3dd44ba04fe6 with 2 jobs across 2 processor cores. Automatic build of prank_0.0.120716-1ubuntu1 on nannyberry by sbuild/i386 1.170.5 Build started at 20120823-1624 ****************************************************************************** prank_0.0.120716-1ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB of archives. After this operation, 17.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:17 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5687 kB in 5s (1057 kB/s) Selecting previously unselected package libpipeline1. (Reading database ... 12283 files and directories currently installed.) Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Wed Aug 22 17:41:47 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./prank_0.0.120716-1ubuntu1.dsc dpkg-source: info: extracting prank in prank-0.0.120716 dpkg-source: info: unpacking prank_0.0.120716.orig.tar.gz dpkg-source: info: unpacking prank_0.0.120716-1ubuntu1.debian.tar.gz dpkg-source: info: applying build_on_32_bit.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package prank dpkg-buildpackage: source version 0.0.120716-1ubuntu1 dpkg-source --before-build prank-0.0.120716 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --sourcedirectory=src --parallel dh_testdir -O--sourcedirectory=src -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/prank-0.0.120716' # No distclean! See README.source ( cd src ; make clean ) make[2]: Entering directory `/build/buildd/prank-0.0.120716/src' rm -f writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o rm -f *~ core *.core make[2]: Leaving directory `/build/buildd/prank-0.0.120716/src' ( cd src ; rm -f prank prank.1 ) make[1]: Leaving directory `/build/buildd/prank-0.0.120716' dh_clean -O--sourcedirectory=src -O--parallel debian/rules build dh build --sourcedirectory=src --parallel dh_testdir -O--sourcedirectory=src -O--parallel dh_auto_configure -O--sourcedirectory=src -O--parallel debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/prank-0.0.120716' dh_auto_build --verbose cd src make -j2 make[2]: Entering directory `/build/buildd/prank-0.0.120716/src' g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o writefile.o writefile.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o treenode.o treenode.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o translatesequences.o translatesequences.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o terminalsequence.o terminalsequence.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o terminalnode.o terminalnode.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o site.o site.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o sequence.o sequence.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o readnewick.o readnewick.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o readfile.o readfile.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o readalignment.o readalignment.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o pwsite.o pwsite.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o prank.o prank.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o postprobability.o postprobability.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o node.o node.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o intmatrix.o intmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o hmmodel.o hmmodel.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o hirschberg.o hirschberg.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o guidetree.o guidetree.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o fullprobability.o fullprobability.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o flmatrix.o flmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o eigen.o eigen.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o dbmatrix.o dbmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o characterprobability.o characterprobability.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o boolmatrix.o boolmatrix.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o ancestralsequence.o ancestralsequence.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o ancestralnode.o ancestralnode.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o check_version.o check_version.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o exonerate_reads.o exonerate_reads.cpp g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I. -I/usr/include -o mafft_alignment.o mafft_alignment.cpp pod2man --utf8 --center "The Probabilistic Alignment Kit" -release="v.120716" --section=1 --name="PRANK" prank.1.pod >prank.1 g++ -o prank writefile.o treenode.o translatesequences.o terminalsequence.o terminalnode.o site.o sequence.o readnewick.o readfile.o readalignment.o pwsite.o pwhirschberg.o progressivealignment.o prank.o postprobability.o phylomatchscore.o node.o intmatrix.o hmmodel.o hirschberg.o guidetree.o fullprobability.o flmatrix.o eigen.o dbmatrix.o characterprobability.o boolmatrix.o ancestralsequence.o ancestralnode.o check_version.o exonerate_reads.o mafft_alignment.o make[2]: Leaving directory `/build/buildd/prank-0.0.120716/src' cd /build/buildd/prank-0.0.120716 make[1]: Leaving directory `/build/buildd/prank-0.0.120716' dh_auto_test -O--sourcedirectory=src -O--parallel /usr/bin/fakeroot debian/rules binary dh binary --sourcedirectory=src --parallel dh_testroot -O--sourcedirectory=src -O--parallel dh_prep -O--sourcedirectory=src -O--parallel dh_installdirs -O--sourcedirectory=src -O--parallel dh_auto_install -O--sourcedirectory=src -O--parallel debian/rules override_dh_install make[1]: Entering directory `/build/buildd/prank-0.0.120716' dh_install src/prank /usr/bin dh_installman src/prank.1 make[1]: Leaving directory `/build/buildd/prank-0.0.120716' dh_installdocs -O--sourcedirectory=src -O--parallel dh_installchangelogs -O--sourcedirectory=src -O--parallel dh_installexamples -O--sourcedirectory=src -O--parallel dh_installman -O--sourcedirectory=src -O--parallel dh_installcatalogs -O--sourcedirectory=src -O--parallel dh_installcron -O--sourcedirectory=src -O--parallel dh_installdebconf -O--sourcedirectory=src -O--parallel dh_installemacsen -O--sourcedirectory=src -O--parallel dh_installifupdown -O--sourcedirectory=src -O--parallel dh_installinfo -O--sourcedirectory=src -O--parallel dh_installinit -O--sourcedirectory=src -O--parallel dh_installmenu -O--sourcedirectory=src -O--parallel dh_installmime -O--sourcedirectory=src -O--parallel dh_installmodules -O--sourcedirectory=src -O--parallel dh_installlogcheck -O--sourcedirectory=src -O--parallel dh_installlogrotate -O--sourcedirectory=src -O--parallel dh_installpam -O--sourcedirectory=src -O--parallel dh_installppp -O--sourcedirectory=src -O--parallel dh_installudev -O--sourcedirectory=src -O--parallel dh_installwm -O--sourcedirectory=src -O--parallel dh_installxfonts -O--sourcedirectory=src -O--parallel dh_installgsettings -O--sourcedirectory=src -O--parallel dh_bugfiles -O--sourcedirectory=src -O--parallel dh_ucf -O--sourcedirectory=src -O--parallel dh_lintian -O--sourcedirectory=src -O--parallel dh_gconf -O--sourcedirectory=src -O--parallel dh_icons -O--sourcedirectory=src -O--parallel dh_perl -O--sourcedirectory=src -O--parallel dh_usrlocal -O--sourcedirectory=src -O--parallel dh_link -O--sourcedirectory=src -O--parallel dh_compress -O--sourcedirectory=src -O--parallel dh_fixperms -O--sourcedirectory=src -O--parallel dh_strip -O--sourcedirectory=src -O--parallel dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs -O--sourcedirectory=src -O--parallel dh_shlibdeps -O--sourcedirectory=src -O--parallel dh_installdeb -O--sourcedirectory=src -O--parallel dh_gencontrol -O--sourcedirectory=src -O--parallel dh_md5sums -O--sourcedirectory=src -O--parallel dh_builddeb -O--sourcedirectory=src -O--parallel INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `prank' in `../prank_0.0.120716-1ubuntu1_i386.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../prank_0.0.120716-1ubuntu1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build prank-0.0.120716 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120823-1625 chroot-autobuild/build/buildd/prank_0.0.120716-1ubuntu1_i386.deb: new debian package, version 2.0. size 340982 bytes: control archive= 1325 bytes. 1925 bytes, 37 lines control 250 bytes, 4 lines md5sums Package: prank Version: 0.0.120716-1ubuntu1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 927 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6) Enhances: t-coffee Section: non-free/science Priority: optional Homepage: http://www.ebi.ac.uk/goldman-srv/prank/ Description: Probabilistic Alignment Kit for DNA, codon and amino-acid sequences PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences. . PRANK is a command-line program for Unix-style environments but the same sequence alignment engine is implemented in the graphical program PRANKSTER. In addition to providing a user-friendly interface to those not familiar with Unix systems, PRANKSTER is an alignment browser for alignments saved in the HSAML format. The novel format allows for storing all the information generated by the aligner and the alignment browser is a convenient way to analyse and manipulate the data. . PRANK aims at an evolutionarily correct sequence alignment and often the result looks different from ones generated with other alignment methods. There are, however, cases where the different look is caused by violations of the method's assumptions. To understand why things may go wrong and how to avoid that, read this explanation of differences between PRANK and traditional progressive alignment methods. chroot-autobuild/build/buildd/prank_0.0.120716-1ubuntu1_i386.deb: drwxr-xr-x root/root 0 2012-08-23 16:25 ./ drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/ drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/bin/ -rwxr-xr-x root/root 907420 2012-08-23 16:25 ./usr/bin/prank drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/share/ drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/share/doc/prank/ -rw-r--r-- root/root 456 2012-08-22 17:38 ./usr/share/doc/prank/changelog.Debian.gz -rw-r--r-- root/root 748 2012-08-20 14:37 ./usr/share/doc/prank/copyright drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-23 16:25 ./usr/share/man/man1/ -rw-r--r-- root/root 2792 2012-08-23 16:25 ./usr/share/man/man1/prank.1.gz prank_0.0.120716-1ubuntu1_i386.changes: Format: 1.8 Date: Wed, 22 Aug 2012 18:38:36 +0100 Source: prank Binary: prank Architecture: i386 Version: 0.0.120716-1ubuntu1 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Tim Booth Description: prank - Probabilistic Alignment Kit for DNA, codon and amino-acid sequenc Changes: prank (0.0.120716-1ubuntu1) precise; urgency=low . * Files now on Google Code - edited watchfile * New upstream release * Code is now in src/ subdirectory * manpage patch has been incorporated in upstream, and I've added the cleanup fixes into /debian/rules, so there are now no patches * Prevent DH from doing QMake rebuild - see README.source for a justification * Fudge the Makefile to work on 32 or 64 bit Checksums-Sha1: c9b5c550e619af75e8850e6ff6a37e79f5f0f4a7 340982 prank_0.0.120716-1ubuntu1_i386.deb Checksums-Sha256: db31c1d5b7ffb3763c5c99f84ac0267f11cfb7c05c4588382cad88fc63ca1182 340982 prank_0.0.120716-1ubuntu1_i386.deb Files: 07af22074e1f9b8a79c948612243b4d8 340982 non-free/science optional prank_0.0.120716-1ubuntu1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120823-1625 Build needed 00:00:27, 15436k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6'] Scanning for processes to kill in build /home/buildd/build-eac3e98e8d67183c10f2656afffe3dd44ba04fe6/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6'] Unmounting chroot for build eac3e98e8d67183c10f2656afffe3dd44ba04fe6... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'eac3e98e8d67183c10f2656afffe3dd44ba04fe6'] Removing build eac3e98e8d67183c10f2656afffe3dd44ba04fe6