RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-32-xen #1 SMP Thu Jul 12 14:30:40 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 6 Sep 06:39:23 ntpdate[3383]: step time server 10.211.37.1 offset -759131.597045 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'dba8bdbba0bc868747f00841454596a7c42ace81', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build dba8bdbba0bc868747f00841454596a7c42ace81 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'dba8bdbba0bc868747f00841454596a7c42ace81'] Mounting chroot for build dba8bdbba0bc868747f00841454596a7c42ace81 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'dba8bdbba0bc868747f00841454596a7c42ace81', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-dba8bdbba0bc868747f00841454596a7c42ace81 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'dba8bdbba0bc868747f00841454596a7c42ace81', 'i386'] Updating debian chroot for build dba8bdbba0bc868747f00841454596a7c42ace81 Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Ign http://ppa.launchpad.net precise InRelease Get:5 http://ftpmaster.internal precise-security Release [49.6 kB] Get:6 http://ppa.launchpad.net precise Release.gpg [316 B] Get:7 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:8 http://ppa.launchpad.net precise Release [11.9 kB] Get:9 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Ign http://ppa.launchpad.net precise Release Get:10 http://ppa.launchpad.net precise/main i386 Packages [14.7 kB] Ign http://ppa.launchpad.net precise/main TranslationIndex Ign http://ppa.launchpad.net precise/main Translation-en Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [161 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [41.4 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [378 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [127 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9672 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.6 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [75.6 kB] Fetched 11.7 MB in 8s (1327 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 1s (11.2 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 28 11:49:44 UTC 2012. Universal Time is now: Tue Aug 28 11:49:44 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'dba8bdbba0bc868747f00841454596a7c42ace81', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'embassy-phylip_3.69.650-0ubuntu1.dsc'] Initiating build dba8bdbba0bc868747f00841454596a7c42ace81 with 2 jobs across 2 processor cores. Automatic build of embassy-phylip_3.69.650-0ubuntu1 on lansones by sbuild/i386 1.170.5 Build started at 20120828-1149 ****************************************************************************** embassy-phylip_3.69.650-0ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: libgd2-noxpm-dev, debhelper (>= 9), autotools-dev, libxaw7-dev, emboss-lib (>= 6.5.7), emboss-lib (<< 6.6.0~), libmysqlclient-dev, libpq-dev Checking for already installed source dependencies... libgd2-noxpm-dev: missing debhelper: missing autotools-dev: missing libxaw7-dev: missing emboss-lib: missing emboss-lib: missing libmysqlclient-dev: missing libpq-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install libgd2-noxpm-dev debhelper autotools-dev libxaw7-dev emboss-lib emboss-lib libmysqlclient-dev libpq-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils comerr-dev dh-apparmor file gettext gettext-base groff-base html2text intltool-debian krb5-multidev libcroco3 libexpat1 libfreetype6 libfreetype6-dev libgd2-noxpm libgettextpo0 libgssrpc4 libhpdf-2.2.1 libice-dev libice6 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libmagic1 libmysqlclient18 libpipeline1 libpng12-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libssl-dev libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxaw7 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxmu-dev libxmu-headers libxmu6 libxpm-dev libxpm4 libxt-dev libxt6 man-db mysql-common po-debconf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation doc-base dh-make gettext-doc groff krb5-doc libgd-tools krb5-user postgresql-doc-9.1 libxcb-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libssl-doc libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils comerr-dev debhelper dh-apparmor emboss-lib file gettext gettext-base groff-base html2text intltool-debian krb5-multidev libcroco3 libexpat1 libfreetype6 libfreetype6-dev libgd2-noxpm libgd2-noxpm-dev libgettextpo0 libgssrpc4 libhpdf-2.2.1 libice-dev libice6 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libmagic1 libmysqlclient-dev libmysqlclient18 libpipeline1 libpng12-dev libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libssl-dev libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxaw7 libxaw7-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxmu-dev libxmu-headers libxmu6 libxpm-dev libxpm4 libxt-dev libxt6 man-db mysql-common po-debconf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 21.2 MB of archives. After this operation, 74.2 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgssrpc4 libkadm5clnt-mit8 libkdb5-6 libkadm5srv-mit8 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libexpat1 libfreetype6 libjpeg-turbo8 libjpeg8 libgd2-noxpm libhpdf-2.2.1 emboss-lib libcroco3 libunistring0 libgettextpo0 x11-common libice6 mysql-common libmysqlclient18 libsm6 libxt6 libxmu6 libxpm4 libxaw7 libmagic1 file bsdmainutils gettext-base groff-base man-db autotools-dev html2text gettext intltool-debian po-debconf dh-apparmor debhelper comerr-dev krb5-multidev zlib1g-dev libfreetype6-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev libpng12-dev libgd2-noxpm-dev xorg-sgml-doctools x11proto-core-dev libice-dev libmysqlclient-dev libpq5 libssl-dev libkrb5-dev libpq-dev libpthread-stubs0 libpthread-stubs0-dev libsm-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libxcb1-dev libx11-dev x11proto-xext-dev libxext-dev libxt-dev libxmu-headers libxmu-dev libxpm-dev libxaw7-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-security/main libgssrpc4 i386 1.10+dfsg~beta1-2ubuntu0.3 [57.7 kB] Get:2 http://ppa.launchpad.net/nebc/bio-linux/ubuntu/ precise/main emboss-lib i386 6.5.7-0ubuntu3 [3031 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-security/main libkadm5clnt-mit8 i386 1.10+dfsg~beta1-2ubuntu0.3 [38.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-security/main libkdb5-6 i386 1.10+dfsg~beta1-2ubuntu0.3 [37.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libkadm5srv-mit8 i386 1.10+dfsg~beta1-2ubuntu0.3 [54.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-4 [8344 B] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-4 [13.0 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.8.1-1 [48.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.99.1-0ubuntu2 [770 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libxext6 i386 2:1.3.0-3build1 [33.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1 i386 2.0.1-7.2ubuntu1.1 [130 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.8-1ubuntu2 [345 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu4.1 [118 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu7 [2112 B] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libgd2-noxpm i386 2.0.36~rc1~dfsg-6ubuntu2 [199 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/universe libhpdf-2.2.1 i386 2.2.1-1 [500 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main x11-common all 1:7.6+12ubuntu1 [57.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libice6 i386 2:1.0.7-2build1 [44.7 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-security/main mysql-common all 5.5.24-0ubuntu0.12.04.1 [13.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-security/main libmysqlclient18 i386 5.5.24-0ubuntu0.12.04.1 [921 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libsm6 i386 2:1.2.0-2build1 [17.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libxt6 i386 1:1.1.1-2build1 [180 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libxmu6 i386 2:1.1.0-3 [52.4 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libxpm4 i386 1:3.5.9-4 [37.4 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libxaw7 i386 2:1.0.9-3ubuntu1 [201 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:44 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main comerr-dev i386 2.1-1.42-1ubuntu2 [42.4 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise-security/main krb5-multidev i386 1.10+dfsg~beta1-2ubuntu0.3 [125 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev i386 2.4.8-1ubuntu2 [778 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8-dev i386 1.1.90+svn733-0ubuntu4.1 [414 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8-dev i386 8c-2ubuntu7 [1544 B] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libpng12-dev i386 1.2.46-3ubuntu4 [207 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libgd2-noxpm-dev i386 2.0.36~rc1~dfsg-6ubuntu2 [208 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main libice-dev i386 2:1.0.7-2build1 [130 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise-security/main libmysqlclient-dev i386 5.5.24-0ubuntu0.12.04.1 [1358 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise-security/main libpq5 i386 9.1.5-0ubuntu12.04 [100 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise-security/main libssl-dev i386 1.0.1-4ubuntu5.3 [1418 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-dev i386 1.10+dfsg~beta1-2ubuntu0.3 [11.0 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise-security/main libpq-dev i386 9.1.5-0ubuntu12.04 [215 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 i386 0.3-3 [3264 B] Get:63 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev i386 0.3-3 [2860 B] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev i386 2:1.2.0-2build1 [88.3 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev i386 1:1.0.6-4 [10.2 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev i386 1:1.1.0-4 [26.5 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev all 2.1.99.6-1 [133 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev all 1.0.5-2 [27.6 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev i386 1.8.1-1 [82.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev i386 2:1.4.99.1-0ubuntu2 [894 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev all 7.2.0-3 [253 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev i386 2:1.3.0-3build1 [150 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev i386 1:1.1.1-2build1 [472 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libxmu-headers all 2:1.1.0-3 [56.4 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libxmu-dev i386 2:1.1.0-3 [58.2 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libxpm-dev i386 1:3.5.9-4 [93.9 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/main libxaw7-dev i386 2:1.0.9-3ubuntu1 [442 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.2 MB in 3s (5950 kB/s) Selecting previously unselected package libgssrpc4. (Reading database ... 12283 files and directories currently installed.) Unpacking libgssrpc4 (from .../libgssrpc4_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libkadm5clnt-mit8. Unpacking libkadm5clnt-mit8 (from .../libkadm5clnt-mit8_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libkdb5-6. Unpacking libkdb5-6 (from .../libkdb5-6_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libkadm5srv-mit8. Unpacking libkadm5srv-mit8 (from .../libkadm5srv-mit8_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_i386.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8.1-1_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu2_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu2_i386.deb) ... Selecting previously unselected package libxext6. Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3build1_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2ubuntu1.1_i386.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1ubuntu2_i386.deb) ... Selecting previously unselected package libjpeg-turbo8. Unpacking libjpeg-turbo8 (from .../libjpeg-turbo8_1.1.90+svn733-0ubuntu4.1_i386.deb) ... Selecting previously unselected package libjpeg8. Unpacking libjpeg8 (from .../libjpeg8_8c-2ubuntu7_i386.deb) ... Selecting previously unselected package libgd2-noxpm. Unpacking libgd2-noxpm (from .../libgd2-noxpm_2.0.36~rc1~dfsg-6ubuntu2_i386.deb) ... Selecting previously unselected package libhpdf-2.2.1. Unpacking libhpdf-2.2.1 (from .../libhpdf-2.2.1_2.2.1-1_i386.deb) ... Selecting previously unselected package emboss-lib. Unpacking emboss-lib (from .../emboss-lib_6.5.7-0ubuntu3_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.6+12ubuntu1_all.deb) ... Selecting previously unselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.7-2build1_i386.deb) ... Selecting previously unselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.5.24-0ubuntu0.12.04.1_all.deb) ... Selecting previously unselected package libmysqlclient18. Unpacking libmysqlclient18 (from .../libmysqlclient18_5.5.24-0ubuntu0.12.04.1_i386.deb) ... Selecting previously unselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2build1_i386.deb) ... Selecting previously unselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2build1_i386.deb) ... Selecting previously unselected package libxmu6. Unpacking libxmu6 (from .../libxmu6_2%3a1.1.0-3_i386.deb) ... Selecting previously unselected package libxpm4. Unpacking libxpm4 (from .../libxpm4_1%3a3.5.9-4_i386.deb) ... Selecting previously unselected package libxaw7. Unpacking libxaw7 (from .../libxaw7_2%3a1.0.9-3ubuntu1_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Selecting previously unselected package comerr-dev. Unpacking comerr-dev (from .../comerr-dev_2.1-1.42-1ubuntu2_i386.deb) ... Selecting previously unselected package krb5-multidev. Unpacking krb5-multidev (from .../krb5-multidev_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_i386.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.8-1ubuntu2_i386.deb) ... Selecting previously unselected package libjpeg-turbo8-dev. Unpacking libjpeg-turbo8-dev (from .../libjpeg-turbo8-dev_1.1.90+svn733-0ubuntu4.1_i386.deb) ... Selecting previously unselected package libjpeg8-dev. Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2ubuntu7_i386.deb) ... Selecting previously unselected package libjpeg-dev. Unpacking libjpeg-dev (from .../libjpeg-dev_8c-2ubuntu7_all.deb) ... Selecting previously unselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3ubuntu4_i386.deb) ... Selecting previously unselected package libgd2-noxpm-dev. Unpacking libgd2-noxpm-dev (from .../libgd2-noxpm-dev_2.0.36~rc1~dfsg-6ubuntu2_i386.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.10-1_all.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.22-1_all.deb) ... Selecting previously unselected package libice-dev. Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-2build1_i386.deb) ... Selecting previously unselected package libmysqlclient-dev. Unpacking libmysqlclient-dev (from .../libmysqlclient-dev_5.5.24-0ubuntu0.12.04.1_i386.deb) ... Selecting previously unselected package libpq5. Unpacking libpq5 (from .../libpq5_9.1.5-0ubuntu12.04_i386.deb) ... Selecting previously unselected package libssl-dev. Unpacking libssl-dev (from .../libssl-dev_1.0.1-4ubuntu5.3_i386.deb) ... Selecting previously unselected package libkrb5-dev. Unpacking libkrb5-dev (from .../libkrb5-dev_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libpq-dev. Unpacking libpq-dev (from .../libpq-dev_9.1.5-0ubuntu12.04_i386.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-3_i386.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-3_i386.deb) ... Selecting previously unselected package libsm-dev. Unpacking libsm-dev (from .../libsm-dev_2%3a1.2.0-2build1_i386.deb) ... Selecting previously unselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-4_i386.deb) ... Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.1.99.6-1_all.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_all.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_all.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.8.1-1_i386.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.99.1-0ubuntu2_i386.deb) ... Selecting previously unselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.2.0-3_all.deb) ... Selecting previously unselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.3.0-3build1_i386.deb) ... Selecting previously unselected package libxt-dev. Unpacking libxt-dev (from .../libxt-dev_1%3a1.1.1-2build1_i386.deb) ... Selecting previously unselected package libxmu-headers. Unpacking libxmu-headers (from .../libxmu-headers_2%3a1.1.0-3_all.deb) ... Selecting previously unselected package libxmu-dev. Unpacking libxmu-dev (from .../libxmu-dev_2%3a1.1.0-3_i386.deb) ... Selecting previously unselected package libxpm-dev. Unpacking libxpm-dev (from .../libxpm-dev_1%3a3.5.9-4_i386.deb) ... Selecting previously unselected package libxaw7-dev. Unpacking libxaw7-dev (from .../libxaw7-dev_2%3a1.0.9-3ubuntu1_i386.deb) ... Setting up libgssrpc4 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkadm5clnt-mit8 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkdb5-6 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkadm5srv-mit8 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.8.1-1) ... Setting up libx11-data (2:1.4.99.1-0ubuntu2) ... Setting up libx11-6 (2:1.4.99.1-0ubuntu2) ... Setting up libxext6 (2:1.3.0-3build1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libexpat1 (2.0.1-7.2ubuntu1.1) ... Setting up libfreetype6 (2.4.8-1ubuntu2) ... Setting up libjpeg-turbo8 (1.1.90+svn733-0ubuntu4.1) ... Setting up libjpeg8 (8c-2ubuntu7) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-6ubuntu2) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up emboss-lib (6.5.7-0ubuntu3) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up x11-common (1:7.6+12ubuntu1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2build1) ... Setting up mysql-common (5.5.24-0ubuntu0.12.04.1) ... Setting up libmysqlclient18 (5.5.24-0ubuntu0.12.04.1) ... Setting up libsm6 (2:1.2.0-2build1) ... Setting up libxt6 (1:1.1.1-2build1) ... Setting up libxmu6 (2:1.1.0-3) ... Setting up libxpm4 (1:3.5.9-4) ... Setting up libxaw7 (2:1.0.9-3ubuntu1) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... 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Setting up libxaw7-dev (2:1.0.9-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Aug 28 10:46:16 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./embassy-phylip_3.69.650-0ubuntu1.dsc dpkg-source: info: extracting embassy-phylip in embassy-phylip-3.69.650 dpkg-source: info: unpacking embassy-phylip_3.69.650.orig.tar.gz dpkg-source: info: unpacking embassy-phylip_3.69.650-0ubuntu1.debian.tar.gz dpkg-buildpackage: source package embassy-phylip dpkg-buildpackage: source version 3.69.650-0ubuntu1 dpkg-source --before-build embassy-phylip-3.69.650 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build dh build dh_testdir debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/embassy-phylip-3.69.650' dh_auto_configure -- --enable-systemlibs configure: WARNING: unrecognized options: --disable-maintainer-mode checking for gawk... no checking for mawk... mawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... 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(cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking X11/Xaw/Label.h usability... yes checking X11/Xaw/Label.h presence... yes checking for X11/Xaw/Label.h... yes checking for XawInitializeWidgetSet in -lXaw... yes checking for XtToolkitInitialize in -lXt... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... no checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... no checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating data/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' dh_auto_build make[1]: Entering directory `/build/buildd/embassy-phylip-3.69.650' Making all in src make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/src' make all-am make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/src' gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c clique.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c disc.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c phylip.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fclique clique.o disc.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c consense.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c cons.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fconsense consense.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fconsense consense.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c contml.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c cont.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fcontml contml.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fcontml contml.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c contrast.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fcontrast contrast.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fcontrast contrast.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnacomp.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seq.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnadist.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnainvar.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnaml.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnamlk.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c printree.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c mlclock.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnamove.c dnamove.c: In function 'redisplay': dnamove.c:2101:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] dnamove.c:2202:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] dnamove.c: In function 'rearrange': dnamove.c:1650:16: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] dnamove.c: In function 'yourtree': dnamove.c:1380:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c moves.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnapars.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dnapenny.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dolmove.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dollo.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dollop.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dolpenny.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c drawgram.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c draw.c draw.c: In function 'plotpreview': draw.c:3323:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c: In function 'makebox': draw.c:3153:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c: In function 'getvrmlparms': draw.c:1640:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1658:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1685:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1712:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1739:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1766:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c: In function 'getrayparms': draw.c:1443:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1461:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1488:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1515:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1544:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1571:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c:1578:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c: In function 'finishplotter': draw.c:807:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] draw.c: In function 'getpreview': draw.c:381:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c draw2.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c drawtree.c drawtree.c: In function 'getparms': drawtree.c:746:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:780:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:796:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:814:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:843:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:867:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:880:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] drawtree.c:894:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c factor.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o ffactor factor.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o ffactor factor.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c fitch.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c dist.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o ffitch fitch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o ffitch fitch.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c gendist.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fgendist gendist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fgendist gendist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c kitsch.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c mix.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c wagner.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c move.c move.c: In function 'redisplay': move.c:1354:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] move.c:1460:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c neighbor.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c pars.c gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c discrete.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fpars pars.o discrete.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fpars pars.o discrete.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c penny.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c proml.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fproml proml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fproml proml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c promlk.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c protdist.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fprotdist protdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fprotdist protdist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c protpars.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fprotpars protpars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fprotpars protpars.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c restdist.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o frestdist restdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o frestdist restdist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c restml.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o frestml restml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o frestml restml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c retree.c retree.c: In function 'redisplay': retree.c:3028:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] retree.c:3149:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] retree.c: In function 'changelength': retree.c:2880:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] retree.c: In function 'treewrite': retree.c:2704:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] retree.c: In function 'del_or_restore': retree.c:2011:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] retree.c: In function 'rearrange': retree.c:1496:16: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] retree.c: In function 'yourtree': retree.c:1205:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fretree retree.o moves.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fretree retree.o moves.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c discboot.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c freqboot.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c restboot.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o frestboot restboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o frestboot restboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqboot.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqbootall.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c treedist.c treedist.c: In function 'pairing_submenu': treedist.c:884:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] treedist.c: In function 'output_submenu': treedist.c:835:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o ftreedist treedist.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o ftreedist treedist.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c treedistpair.c treedistpair.c: In function 'pairing_submenu': treedistpair.c:886:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] treedistpair.c: In function 'output_submenu': treedistpair.c:837:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/src' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/src' Making all in emboss_acd make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' Making all in data make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/data' Making all in emboss_doc make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' Making all in html make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' Making all in text make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' dh_auto_test make[1]: Entering directory `/build/buildd/embassy-phylip-3.69.650' Making check in src make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/src' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/src' Making check in emboss_acd make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' Making check in data make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/data' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/data' Making check in emboss_doc make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' Making check in html make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' Making check in text make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install make[1]: Entering directory `/build/buildd/embassy-phylip-3.69.650' Making install in src make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/src' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c fclique fconsense fcontml fcontrast fdnacomp fdnadist fdnainvar fdnaml fdnamlk fdnamove fdnapars fdnapenny fdolmove fdollop fdolpenny fdrawgram fdrawtree ffactor ffitch fgendist fkitsch fmix fmove fneighbor fpars fpenny fproml fpromlk fprotdist fprotpars frestdist frestml fretree fdiscboot ffreqboot frestboot fseqboot fseqbootall ftreedist ftreedistpair '/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin' libtool: install: /usr/bin/install -c fclique /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fclique libtool: install: /usr/bin/install -c fconsense /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fconsense libtool: install: /usr/bin/install -c fcontml /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fcontml libtool: install: /usr/bin/install -c fcontrast /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fcontrast libtool: install: /usr/bin/install -c fdnacomp /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnacomp libtool: install: /usr/bin/install -c fdnadist /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnadist libtool: install: /usr/bin/install -c fdnainvar /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnainvar libtool: install: /usr/bin/install -c fdnaml /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnaml libtool: install: /usr/bin/install -c fdnamlk /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnamlk libtool: install: /usr/bin/install -c fdnamove /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnamove libtool: install: /usr/bin/install -c fdnapars /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnapars libtool: install: /usr/bin/install -c fdnapenny /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdnapenny libtool: install: /usr/bin/install -c fdolmove /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdolmove libtool: install: /usr/bin/install -c fdollop /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdollop libtool: install: /usr/bin/install -c fdolpenny /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdolpenny libtool: install: /usr/bin/install -c fdrawgram /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdrawgram libtool: install: /usr/bin/install -c fdrawtree /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdrawtree libtool: install: /usr/bin/install -c ffactor /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/ffactor libtool: install: /usr/bin/install -c ffitch /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/ffitch libtool: install: /usr/bin/install -c fgendist /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fgendist libtool: install: /usr/bin/install -c fkitsch /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fkitsch libtool: install: /usr/bin/install -c fmix /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fmix libtool: install: /usr/bin/install -c fmove /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fmove libtool: install: /usr/bin/install -c fneighbor /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fneighbor libtool: install: /usr/bin/install -c fpars /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fpars libtool: install: /usr/bin/install -c fpenny /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fpenny libtool: install: /usr/bin/install -c fproml /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fproml libtool: install: /usr/bin/install -c fpromlk /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fpromlk libtool: install: /usr/bin/install -c fprotdist /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fprotdist libtool: install: /usr/bin/install -c fprotpars /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fprotpars libtool: install: /usr/bin/install -c frestdist /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/frestdist libtool: install: /usr/bin/install -c frestml /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/frestml libtool: install: /usr/bin/install -c fretree /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fretree libtool: install: /usr/bin/install -c fdiscboot /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fdiscboot libtool: install: /usr/bin/install -c ffreqboot /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/ffreqboot libtool: install: /usr/bin/install -c frestboot /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/frestboot libtool: install: /usr/bin/install -c fseqboot /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fseqboot libtool: install: /usr/bin/install -c fseqbootall /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/fseqbootall libtool: install: /usr/bin/install -c ftreedist /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/ftreedist libtool: install: /usr/bin/install -c ftreedistpair /build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/bin/ftreedistpair make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/src' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/src' Making install in emboss_acd make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/acd" /usr/bin/install -c -m 644 fclique.acd fconsense.acd fcontml.acd fcontrast.acd fdiscboot.acd fdnacomp.acd fdnadist.acd fdnainvar.acd fdnaml.acd fdnamlk.acd fdnamove.acd fdnapars.acd fdnapenny.acd fdollop.acd fdolmove.acd fdolpenny.acd fdrawgram.acd fdrawtree.acd ffactor.acd ffitch.acd ffreqboot.acd fgendist.acd fkitsch.acd fmix.acd fmove.acd fneighbor.acd fpars.acd fpenny.acd fproml.acd fpromlk.acd fprotdist.acd fprotpars.acd frestboot.acd frestdist.acd frestml.acd fretree.acd fseqboot.acd fseqbootall.acd ftreedist.acd ftreedistpair.acd '/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/acd' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_acd' Making install in data make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/data' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/data' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/PHYLIPNEW/data/" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/PHYLIPNEW/data/" /usr/bin/install -c -m 644 font1 font2 font3 font4 font5 font6 '/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/PHYLIPNEW/data/' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/data' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/data' Making install in emboss_doc make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' Making install in html make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' make[4]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/html/embassy/phylipnew" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/doc/html/embassy/phylipnew" /usr/bin/install -c -m 644 index.html fclique.html fconsense.html fcontml.html fcontrast.html fdiscboot.html fdnacomp.html fdnadist.html fdnainvar.html fdnaml.html fdnamlk.html fdnamove.html fdnapars.html fdnapenny.html fdollop.html fdolmove.html fdolpenny.html fdrawgram.html fdrawtree.html ffactor.html ffitch.html ffreqboot.html fgendist.html fkitsch.html fmix.html fmove.html fneighbor.html fpars.html fpenny.html fproml.html fpromlk.html fprotdist.html fprotpars.html frestboot.html frestdist.html frestml.html fretree.html fseqboot.html fseqbootall.html ftreedist.html '/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/doc/html/embassy/phylipnew' /usr/bin/install -c -m 644 ftreedistpair.html '/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/doc/html/embassy/phylipnew' make[4]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/html' Making install in text make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[4]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/doc/programs/text" /usr/bin/install -c -m 644 fclique.txt fconsense.txt fcontml.txt fcontrast.txt fdiscboot.txt fdnacomp.txt fdnadist.txt fdnainvar.txt fdnaml.txt fdnamlk.txt fdnamove.txt fdnapars.txt fdnapenny.txt fdollop.txt fdolmove.txt fdolpenny.txt fdrawgram.txt fdrawtree.txt ffactor.txt ffitch.txt ffreqboot.txt fgendist.txt fkitsch.txt fmix.txt fmove.txt fneighbor.txt fpars.txt fpenny.txt fproml.txt fpromlk.txt fprotdist.txt fprotpars.txt frestboot.txt frestdist.txt frestml.txt fretree.txt fseqboot.txt fseqbootall.txt ftreedist.txt ftreedistpair.txt '/build/buildd/embassy-phylip-3.69.650/debian/embassy-phylip/usr/share/EMBOSS/doc/programs/text' make[4]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[4]: Entering directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-phylip-3.69.650' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69.650' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69.650' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link dh_compress dh_fixperms dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: dependency on libensembl.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libepcre.so.7 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxdb.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxg.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `embassy-phylip' in `../embassy-phylip_3.69.650-0ubuntu1_i386.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../embassy-phylip_3.69.650-0ubuntu1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build embassy-phylip-3.69.650 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120828-1152 chroot-autobuild/build/buildd/embassy-phylip_3.69.650-0ubuntu1_i386.deb: new debian package, version 2.0. size 2419350 bytes: control archive= 6488 bytes. 1297 bytes, 25 lines control 15275 bytes, 212 lines md5sums Package: embassy-phylip Version: 3.69.650-0ubuntu1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 6180 Depends: emboss-lib (>= 6.4.0-1~), libc6 (>= 2.7), libx11-6, libxaw7, libxt6, emboss-lib (<< 6.4.1~) Section: non-free/science Priority: optional Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#PHYLIPNEW Description: EMBOSS conversions of the programs in the phylip package This package is the adaptation of the PHYLIP package in which its programs can operate with the biological sequence formats and databases of the European Molecular Biology Open Software Suite (EMBOSS). The software packages adapted for EMBOSS are called EMBASSY. . PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters. . The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them from the original programs and avoid namespace conflict. chroot-autobuild/build/buildd/embassy-phylip_3.69.650-0ubuntu1_i386.deb: drwxr-xr-x root/root 0 2012-08-28 11:51 ./ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/bin/ -rwxr-xr-x root/root 112192 2012-08-28 11:51 ./usr/bin/ffreqboot -rwxr-xr-x root/root 58932 2012-08-28 11:51 ./usr/bin/fkitsch -rwxr-xr-x root/root 83508 2012-08-28 11:51 ./usr/bin/fdolmove -rwxr-xr-x root/root 120444 2012-08-28 11:51 ./usr/bin/fdnapars -rwxr-xr-x root/root 124484 2012-08-28 11:51 ./usr/bin/fdnamove -rwxr-xr-x root/root 83504 2012-08-28 11:51 ./usr/bin/fmove -rwxr-xr-x root/root 141496 2012-08-28 11:51 ./usr/bin/fdrawgram -rwxr-xr-x root/root 63032 2012-08-28 11:51 ./usr/bin/ffitch -rwxr-xr-x root/root 108412 2012-08-28 11:51 ./usr/bin/fdnapenny -rwxr-xr-x root/root 136800 2012-08-28 11:51 ./usr/bin/fdnaml -rwxr-xr-x root/root 146460 2012-08-28 11:51 ./usr/bin/fproml -rwxr-xr-x root/root 157880 2012-08-28 11:51 ./usr/bin/fdrawtree -rwxr-xr-x root/root 58912 2012-08-28 11:51 ./usr/bin/fcontrast -rwxr-xr-x root/root 75328 2012-08-28 11:51 ./usr/bin/fmix -rwxr-xr-x root/root 63048 2012-08-28 11:51 ./usr/bin/fconsense -rwxr-xr-x root/root 112188 2012-08-28 11:51 ./usr/bin/fdiscboot -rwxr-xr-x root/root 116292 2012-08-28 11:51 ./usr/bin/fdnadist -rwxr-xr-x root/root 71216 2012-08-28 11:51 ./usr/bin/fclique -rwxr-xr-x root/root 75324 2012-08-28 11:51 ./usr/bin/ftreedistpair -rwxr-xr-x root/root 79400 2012-08-28 11:51 ./usr/bin/fretree -rwxr-xr-x root/root 128588 2012-08-28 11:51 ./usr/bin/frestml -rwxr-xr-x root/root 146460 2012-08-28 11:51 ./usr/bin/fpromlk -rwxr-xr-x root/root 120416 2012-08-28 11:51 ./usr/bin/fseqbootall -rwxr-xr-x root/root 108080 2012-08-28 11:51 ./usr/bin/fdnainvar -rwxr-xr-x root/root 132716 2012-08-28 11:51 ./usr/bin/fdnamlk -rwxr-xr-x root/root 103984 2012-08-28 11:51 ./usr/bin/frestdist -rwxr-xr-x root/root 46628 2012-08-28 11:51 ./usr/bin/fgendist -rwxr-xr-x root/root 46636 2012-08-28 11:51 ./usr/bin/ffactor -rwxr-xr-x root/root 67124 2012-08-28 11:51 ./usr/bin/fdolpenny -rwxr-xr-x root/root 112188 2012-08-28 11:51 ./usr/bin/frestboot -rwxr-xr-x root/root 75324 2012-08-28 11:51 ./usr/bin/ftreedist -rwxr-xr-x root/root 71220 2012-08-28 11:51 ./usr/bin/fpenny -rwxr-xr-x root/root 67132 2012-08-28 11:51 ./usr/bin/fcontml -rwxr-xr-x root/root 108088 2012-08-28 11:51 ./usr/bin/fpars -rwxr-xr-x root/root 112284 2012-08-28 11:51 ./usr/bin/fdnacomp -rwxr-xr-x root/root 58924 2012-08-28 11:51 ./usr/bin/fneighbor -rwxr-xr-x root/root 71228 2012-08-28 11:51 ./usr/bin/fdollop -rwxr-xr-x root/root 126428 2012-08-28 11:51 ./usr/bin/fprotdist -rwxr-xr-x root/root 116312 2012-08-28 11:51 ./usr/bin/fseqboot -rwxr-xr-x root/root 120400 2012-08-28 11:51 ./usr/bin/fprotpars drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/PHYLIPNEW/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/ -rw-r--r-- root/root 14314 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/font6 -rw-r--r-- root/root 11297 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/font4 -rw-r--r-- root/root 11288 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/font2 -rw-r--r-- root/root 5934 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/font1 -rw-r--r-- root/root 16985 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/font3 -rw-r--r-- root/root 16886 2012-08-28 11:51 ./usr/share/PHYLIPNEW/data/font5 drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/man/man1/ -rw-r--r-- root/root 1428 2012-08-28 11:51 ./usr/share/man/man1/fmix.1e.gz -rw-r--r-- root/root 1340 2012-08-28 11:51 ./usr/share/man/man1/fdnacomp.1e.gz -rw-r--r-- root/root 1410 2012-08-28 11:51 ./usr/share/man/man1/frestml.1e.gz -rw-r--r-- root/root 1430 2012-08-28 11:51 ./usr/share/man/man1/fdiscboot.1e.gz -rw-r--r-- root/root 1362 2012-08-28 11:51 ./usr/share/man/man1/fcontml.1e.gz -rw-r--r-- root/root 1427 2012-08-28 11:51 ./usr/share/man/man1/fprotpars.1e.gz -rw-r--r-- root/root 1424 2012-08-28 11:51 ./usr/share/man/man1/fprotdist.1e.gz -rw-r--r-- root/root 1471 2012-08-28 11:51 ./usr/share/man/man1/fseqbootall.1e.gz -rw-r--r-- root/root 1287 2012-08-28 11:51 ./usr/share/man/man1/fclique.1e.gz -rw-r--r-- root/root 1462 2012-08-28 11:51 ./usr/share/man/man1/fpars.1e.gz -rw-r--r-- root/root 1315 2012-08-28 11:51 ./usr/share/man/man1/fdnamove.1e.gz -rw-r--r-- root/root 1240 2012-08-28 11:51 ./usr/share/man/man1/fdnainvar.1e.gz -rw-r--r-- root/root 1462 2012-08-28 11:51 ./usr/share/man/man1/fdnapars.1e.gz -rw-r--r-- root/root 1356 2012-08-28 11:51 ./usr/share/man/man1/fmove.1e.gz -rw-r--r-- root/root 1414 2012-08-28 11:51 ./usr/share/man/man1/fdollop.1e.gz -rw-r--r-- root/root 1640 2012-08-28 11:51 ./usr/share/man/man1/fproml.1e.gz -rw-r--r-- root/root 1279 2012-08-28 11:51 ./usr/share/man/man1/fconsense.1e.gz -rw-r--r-- root/root 1214 2012-08-28 11:51 ./usr/share/man/man1/ftreedist.1e.gz -rw-r--r-- root/root 1378 2012-08-28 11:51 ./usr/share/man/man1/fseqboot.1e.gz -rw-r--r-- root/root 1186 2012-08-28 11:51 ./usr/share/man/man1/ffactor.1e.gz -rw-r--r-- root/root 1382 2012-08-28 11:51 ./usr/share/man/man1/fdnapenny.1e.gz -rw-r--r-- root/root 1437 2012-08-28 11:51 ./usr/share/man/man1/fpenny.1e.gz -rw-r--r-- root/root 1643 2012-08-28 11:51 ./usr/share/man/man1/fdnamlk.1e.gz -rw-r--r-- root/root 1216 2012-08-28 11:51 ./usr/share/man/man1/fretree.1e.gz -rw-r--r-- root/root 1196 2012-08-28 11:51 ./usr/share/man/man1/fgendist.1e.gz -rw-r--r-- root/root 1415 2012-08-28 11:51 ./usr/share/man/man1/fdolpenny.1e.gz -rw-r--r-- root/root 1355 2012-08-28 11:51 ./usr/share/man/man1/fdolmove.1e.gz -rw-r--r-- root/root 1675 2012-08-28 11:51 ./usr/share/man/man1/fdnaml.1e.gz -rw-r--r-- root/root 1341 2012-08-28 11:51 ./usr/share/man/man1/ffreqboot.1e.gz -rw-r--r-- root/root 1319 2012-08-28 11:51 ./usr/share/man/man1/fneighbor.1e.gz -rw-r--r-- root/root 1532 2012-08-28 11:51 ./usr/share/man/man1/fdrawgram.1e.gz -rw-r--r-- root/root 1407 2012-08-28 11:51 ./usr/share/man/man1/frestboot.1e.gz -rw-r--r-- root/root 1229 2012-08-28 11:51 ./usr/share/man/man1/ftreedistpair.1e.gz -rw-r--r-- root/root 1430 2012-08-28 11:51 ./usr/share/man/man1/ffitch.1e.gz -rw-r--r-- root/root 1246 2012-08-28 11:51 ./usr/share/man/man1/fcontrast.1e.gz -rw-r--r-- root/root 1617 2012-08-28 11:51 ./usr/share/man/man1/fpromlk.1e.gz -rw-r--r-- root/root 1500 2012-08-28 11:51 ./usr/share/man/man1/fdrawtree.1e.gz -rw-r--r-- root/root 1392 2012-08-28 11:51 ./usr/share/man/man1/fkitsch.1e.gz -rw-r--r-- root/root 1498 2012-08-28 11:51 ./usr/share/man/man1/fdnadist.1e.gz -rw-r--r-- root/root 1321 2012-08-28 11:51 ./usr/share/man/man1/frestdist.1e.gz drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 412 2012-08-24 17:01 ./usr/share/lintian/overrides/embassy-phylip drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/doc/embassy-phylip/ -rw-r--r-- root/root 2213 2011-08-03 12:06 ./usr/share/doc/embassy-phylip/ChangeLog -rw-r--r-- root/root 2326 2012-08-24 17:01 ./usr/share/doc/embassy-phylip/copyright -rw-r--r-- root/root 3793 2009-09-15 16:58 ./usr/share/doc/embassy-phylip/README -rw-r--r-- root/root 1128 2012-08-28 10:31 ./usr/share/doc/embassy-phylip/changelog.Debian.gz drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/EMBOSS/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/EMBOSS/acd/ -rw-r--r-- root/root 4099 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fpenny.acd -rw-r--r-- root/root 2609 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fconsense.acd -rw-r--r-- root/root 4456 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fpars.acd -rw-r--r-- root/root 3221 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fclique.acd -rw-r--r-- root/root 3168 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fneighbor.acd -rw-r--r-- root/root 3731 2012-08-28 11:51 ./usr/share/EMBOSS/acd/frestml.acd -rw-r--r-- root/root 4541 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnadist.acd -rw-r--r-- root/root 3220 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnacomp.acd -rw-r--r-- root/root 4950 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdiscboot.acd -rw-r--r-- root/root 3244 2012-08-28 11:51 ./usr/share/EMBOSS/acd/ffreqboot.acd -rw-r--r-- root/root 2607 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnamove.acd -rw-r--r-- root/root 2282 2012-08-28 11:51 ./usr/share/EMBOSS/acd/ftreedistpair.acd -rw-r--r-- root/root 3723 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdollop.acd -rw-r--r-- root/root 3762 2012-08-28 11:51 ./usr/share/EMBOSS/acd/frestboot.acd -rw-r--r-- root/root 3341 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fkitsch.acd -rw-r--r-- root/root 3319 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnapenny.acd -rw-r--r-- root/root 4164 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fprotpars.acd -rw-r--r-- root/root 1646 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fgendist.acd -rw-r--r-- root/root 2692 2012-08-28 11:51 ./usr/share/EMBOSS/acd/frestdist.acd -rw-r--r-- root/root 7229 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnamlk.acd -rw-r--r-- root/root 1899 2012-08-28 11:51 ./usr/share/EMBOSS/acd/ffactor.acd -rw-r--r-- root/root 4210 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fmix.acd -rw-r--r-- root/root 2177 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fcontrast.acd -rw-r--r-- root/root 7103 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fpromlk.acd -rw-r--r-- root/root 3967 2012-08-28 11:51 ./usr/share/EMBOSS/acd/ffitch.acd -rw-r--r-- root/root 5096 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fprotdist.acd -rw-r--r-- root/root 7348 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fproml.acd -rw-r--r-- root/root 3986 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fseqboot.acd -rw-r--r-- root/root 6848 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdrawtree.acd -rw-r--r-- root/root 7650 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnaml.acd -rw-r--r-- root/root 3225 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fmove.acd -rw-r--r-- root/root 7379 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdrawgram.acd -rw-r--r-- root/root 2005 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fretree.acd -rw-r--r-- root/root 2092 2012-08-28 11:51 ./usr/share/EMBOSS/acd/ftreedist.acd -rw-r--r-- root/root 3690 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdolpenny.acd -rw-r--r-- root/root 5675 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fseqbootall.acd -rw-r--r-- root/root 3326 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fcontml.acd -rw-r--r-- root/root 3120 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdolmove.acd -rw-r--r-- root/root 1871 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnainvar.acd -rw-r--r-- root/root 4454 2012-08-28 11:51 ./usr/share/EMBOSS/acd/fdnapars.acd drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/EMBOSS/doc/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/ -rw-r--r-- root/root 18511 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdnapars.txt -rw-r--r-- root/root 10617 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdrawtree.txt -rw-r--r-- root/root 23698 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fprotdist.txt -rw-r--r-- root/root 25602 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdnapenny.txt -rw-r--r-- root/root 19628 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fmix.txt -rw-r--r-- root/root 17754 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/frestdist.txt -rw-r--r-- root/root 31513 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdnamlk.txt -rw-r--r-- root/root 23101 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/frestboot.txt -rw-r--r-- root/root 13768 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdolmove.txt -rw-r--r-- root/root 12124 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fretree.txt -rw-r--r-- root/root 13308 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fneighbor.txt -rw-r--r-- root/root 11483 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdrawgram.txt -rw-r--r-- root/root 23476 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fseqboot.txt -rw-r--r-- root/root 17581 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdnacomp.txt -rw-r--r-- root/root 36048 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdnaml.txt -rw-r--r-- root/root 16658 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/ftreedist.txt -rw-r--r-- root/root 19048 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fdollop.txt -rw-r--r-- root/root 13284 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/frestml.txt -rw-r--r-- root/root 27187 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fpenny.txt -rw-r--r-- root/root 18223 2012-08-28 11:51 ./usr/share/EMBOSS/doc/programs/text/fcontrast.txt -rw-r--r-- 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11:51 ./usr/share/EMBOSS/doc/html/embassy/ drwxr-xr-x root/root 0 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ -rw-r--r-- root/root 32999 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fcontml.html -rw-r--r-- root/root 25625 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fcontrast.html -rw-r--r-- root/root 21923 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fconsense.html -rw-r--r-- root/root 36136 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffreqboot.html -rw-r--r-- root/root 20057 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fretree.html -rw-r--r-- root/root 26061 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fgendist.html -rw-r--r-- root/root 46337 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamlk.html -rw-r--r-- root/root 23431 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestml.html -rw-r--r-- root/root 34951 2012-08-28 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./usr/share/EMBOSS/doc/html/embassy/phylipnew/fclique.html -rw-r--r-- root/root 37119 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnadist.html -rw-r--r-- root/root 18266 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fmove.html -rw-r--r-- root/root 23121 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamove.html -rw-r--r-- root/root 37115 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotdist.html -rw-r--r-- root/root 28486 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpars.html -rw-r--r-- root/root 32580 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestboot.html -rw-r--r-- root/root 30543 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnacomp.html -rw-r--r-- root/root 25325 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html -rw-r--r-- root/root 51200 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnaml.html -rw-r--r-- root/root 29768 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdiscboot.html -rw-r--r-- root/root 43401 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fproml.html -rw-r--r-- root/root 36030 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqbootall.html -rw-r--r-- root/root 36955 2012-08-28 11:51 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolpenny.html embassy-phylip_3.69.650-0ubuntu1_i386.changes: Format: 1.8 Date: Tue, 28 Aug 2012 11:30:32 +0100 Source: embassy-phylip Binary: embassy-phylip Architecture: i386 Version: 3.69.650-0ubuntu1 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Tim Booth Description: embassy-phylip - EMBOSS conversions of the programs in the phylip package Changes: embassy-phylip (3.69.650-0ubuntu1) precise; urgency=low . * New upstream release * Changed dependencies to build against new EMBOSS and libgd-noxpm Checksums-Sha1: b325d149ffb6f59d81b72ee15e14bf6806a77f4d 2419350 embassy-phylip_3.69.650-0ubuntu1_i386.deb Checksums-Sha256: 0d86a4e06287814ba00d800e618b142d1a90f9e3b90aac5712322bea78176ad2 2419350 embassy-phylip_3.69.650-0ubuntu1_i386.deb Files: ec3db71421ab326e3eaca21206cf82a4 2419350 non-free/science optional embassy-phylip_3.69.650-0ubuntu1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120828-1152 Build needed 00:01:43, 32036k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'dba8bdbba0bc868747f00841454596a7c42ace81'] Scanning for processes to kill in build /home/buildd/build-dba8bdbba0bc868747f00841454596a7c42ace81/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'dba8bdbba0bc868747f00841454596a7c42ace81'] Unmounting chroot for build dba8bdbba0bc868747f00841454596a7c42ace81... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'dba8bdbba0bc868747f00841454596a7c42ace81'] Removing build dba8bdbba0bc868747f00841454596a7c42ace81