RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-31-xen #1 SMP Tue Jun 12 20:10:18 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 4 Sep 12:57:01 ntpdate[3366]: step time server 10.211.37.1 offset -605538.283223 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '4b4fb23924bbea2374fd80ed99723db65c09528c', '/home/buildd/filecache-default/c021ff3d3373fb2201b3008c0ece6808393ff246'] Uncompressing the tarball... Unpacking chroot for build 4b4fb23924bbea2374fd80ed99723db65c09528c RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '4b4fb23924bbea2374fd80ed99723db65c09528c'] Mounting chroot for build 4b4fb23924bbea2374fd80ed99723db65c09528c RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '4b4fb23924bbea2374fd80ed99723db65c09528c', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-4b4fb23924bbea2374fd80ed99723db65c09528c RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '4b4fb23924bbea2374fd80ed99723db65c09528c', 'amd64'] Updating debian chroot for build 4b4fb23924bbea2374fd80ed99723db65c09528c Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:4 http://ftpmaster.internal precise Release [49.6 kB] Get:5 http://ftpmaster.internal precise-security Release [49.6 kB] Ign http://ppa.launchpad.net precise InRelease Get:6 http://ftpmaster.internal precise-updates Release [49.6 kB] Get:7 http://ftpmaster.internal precise/main amd64 Packages [1273 kB] Get:8 http://ppa.launchpad.net precise Release.gpg [316 B] Get:9 http://ppa.launchpad.net precise Release [11.9 kB] Ign http://ppa.launchpad.net precise Release Get:10 http://ppa.launchpad.net precise/main amd64 Packages [15.4 kB] Ign http://ppa.launchpad.net precise/main TranslationIndex Get:11 http://ftpmaster.internal precise/restricted amd64 Packages [8452 B] Get:12 http://ftpmaster.internal precise/universe amd64 Packages [4786 kB] Ign http://ppa.launchpad.net precise/main Translation-en Get:13 http://ftpmaster.internal precise/multiverse amd64 Packages [119 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main amd64 Packages [157 kB] Get:19 http://ftpmaster.internal precise-security/restricted amd64 Packages [3969 B] Get:20 http://ftpmaster.internal precise-security/universe amd64 Packages [41.2 kB] Get:21 http://ftpmaster.internal precise-security/multiverse amd64 Packages [2180 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main amd64 Packages [374 kB] Get:27 http://ftpmaster.internal precise-updates/restricted amd64 Packages [6755 B] Get:28 http://ftpmaster.internal precise-updates/universe amd64 Packages [126 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse amd64 Packages [8677 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.6 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [75.6 kB] Fetched 11.6 MB in 5s (2267 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.0 MB of archives. After this operation, 37.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files amd64 6.5ubuntu6.2 [69.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl amd64 5.14.2-6ubuntu2.1 [4416 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base amd64 5.14.2-6ubuntu2.1 [1498 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 amd64 0.8.16~exp12ubuntu10.2 [932 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt amd64 0.8.16~exp12ubuntu10.2 [1092 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 amd64 1.0.1-4ubuntu5.3 [1011 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 amd64 3.7.9-2ubuntu1.1 [349 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 amd64 2.32.3-0ubuntu1 [1199 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 amd64 175-0ubuntu9.1 [30.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 amd64 1.5.0-3ubuntu0.1 [280 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 amd64 2.10-1ubuntu1.1 [43.3 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 amd64 2.12.14-5ubuntu3.1 [459 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 amd64 1.10+dfsg~beta1-2ubuntu0.3 [80.1 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 amd64 1.10+dfsg~beta1-2ubuntu0.3 [118 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 amd64 1.10+dfsg~beta1-2ubuntu0.3 [355 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 amd64 1.10+dfsg~beta1-2ubuntu0.3 [23.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 amd64 2.1.25.dfsg1-3ubuntu0.1 [69.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 amd64 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal amd64 2.7.3-0ubuntu3.1 [1741 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils amd64 2.88dsf-13.10ubuntu11.1 [60.2 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts amd64 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart amd64 1.5-0ubuntu7 [311 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev amd64 175-0ubuntu9.1 [323 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https amd64 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev amd64 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl amd64 1.0.1-4ubuntu5.3 [523 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.0 MB in 0s (29.3 MB/s) (Reading database ... 12243 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12243 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12243 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_amd64.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12243 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_amd64.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_amd64.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_amd64.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_amd64.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_amd64.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_amd64.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_amd64.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_amd64.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12243 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 28 12:47:17 UTC 2012. Universal Time is now: Tue Aug 28 12:47:17 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12243 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_amd64.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_amd64.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_amd64.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_amd64.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_amd64.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '4b4fb23924bbea2374fd80ed99723db65c09528c', 'amd64', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PPA', '--architecture=amd64', '--comp=main', 'embassy-domalign_0.1.650-0ubuntu1.dsc'] Initiating build 4b4fb23924bbea2374fd80ed99723db65c09528c with 1 jobs across 1 processor cores. Automatic build of embassy-domalign_0.1.650-0ubuntu1 on hamsa by sbuild/amd64 1.170.5 Build started at 20120828-1247 ****************************************************************************** embassy-domalign_0.1.650-0ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: libgd2-noxpm-dev, debhelper (>= 9), emboss-lib (>= 6.5.7), emboss-lib (<< 6.6.0~), libx11-dev, libmysqlclient-dev, libpq-dev, libpng12-dev, libhpdf-dev Checking for already installed source dependencies... libgd2-noxpm-dev: missing debhelper: missing emboss-lib: missing emboss-lib: missing libx11-dev: missing libmysqlclient-dev: missing libpq-dev: missing libpng12-dev: missing libhpdf-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install libgd2-noxpm-dev debhelper emboss-lib emboss-lib libx11-dev libmysqlclient-dev libpq-dev libpng12-dev libhpdf-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils comerr-dev dh-apparmor file gettext gettext-base groff-base html2text intltool-debian krb5-multidev libcroco3 libexpat1 libfreetype6 libfreetype6-dev libgd2-noxpm libgettextpo0 libgssrpc4 libhpdf-2.2.1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libmagic1 libmysqlclient18 libpipeline1 libpq5 libpthread-stubs0 libpthread-stubs0-dev libssl-dev libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 man-db mysql-common po-debconf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation doc-base dh-make gettext-doc groff krb5-doc libgd-tools krb5-user postgresql-doc-9.1 libxcb-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libssl-doc libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils comerr-dev debhelper dh-apparmor emboss-lib file gettext gettext-base groff-base html2text intltool-debian krb5-multidev libcroco3 libexpat1 libfreetype6 libfreetype6-dev libgd2-noxpm libgd2-noxpm-dev libgettextpo0 libgssrpc4 libhpdf-2.2.1 libhpdf-dev libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libmagic1 libmysqlclient-dev libmysqlclient18 libpipeline1 libpng12-dev libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libssl-dev libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 man-db mysql-common po-debconf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After this operation, 72.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgssrpc4 libkadm5clnt-mit8 libkdb5-6 libkadm5srv-mit8 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxml2 libexpat1 libfreetype6 libjpeg-turbo8 libjpeg8 libgd2-noxpm libhpdf-2.2.1 emboss-lib libcroco3 libunistring0 libgettextpo0 mysql-common libmysqlclient18 libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper comerr-dev krb5-multidev zlib1g-dev libfreetype6-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev libpng12-dev libgd2-noxpm-dev libmysqlclient-dev libpq5 libssl-dev libkrb5-dev libpq-dev libpthread-stubs0 libpthread-stubs0-dev xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libxcb1-dev libx11-dev libhpdf-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-security/main libgssrpc4 amd64 1.10+dfsg~beta1-2ubuntu0.3 [57.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libkadm5clnt-mit8 amd64 1.10+dfsg~beta1-2ubuntu0.3 [38.7 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-security/main libkdb5-6 amd64 1.10+dfsg~beta1-2ubuntu0.3 [37.5 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-security/main libkadm5srv-mit8 amd64 1.10+dfsg~beta1-2ubuntu0.3 [54.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 amd64 1.2.1-1 [26.5 kB] Get:6 http://ppa.launchpad.net/nebc/bio-linux/ubuntu/ precise/main emboss-lib amd64 6.5.7-0ubuntu3 [2984 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libxau6 amd64 1:1.0.6-4 [8392 B] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 amd64 1:1.1.0-4 [12.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 amd64 1.8.1-1 [44.7 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 amd64 2:1.4.99.1-0ubuntu2 [762 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 amd64 2.7.8.dfsg-5.1ubuntu4.1 [673 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1 amd64 2.0.1-7.2ubuntu1.1 [131 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 amd64 2.4.8-1ubuntu2 [343 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8 amd64 1.1.90+svn733-0ubuntu4.1 [111 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 amd64 8c-2ubuntu7 [2112 B] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-6ubuntu2 [200 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/universe libhpdf-2.2.1 amd64 2.2.1-1 [500 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 amd64 0.6.5-1 [99.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 amd64 0.9.3-5 [427 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 amd64 0.18.1.1-5ubuntu3 [120 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-security/main mysql-common all 5.5.24-0ubuntu0.12.04.1 [13.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-security/main libmysqlclient18 amd64 5.5.24-0ubuntu0.12.04.1 [946 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 amd64 5.09-2 [217 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main file amd64 5.09-2 [19.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils amd64 8.2.3ubuntu1 [200 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main gettext-base amd64 0.18.1.1-5ubuntu3 [80.0 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main groff-base amd64 1.21-7 [1046 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main man-db amd64 2.6.1-2 [756 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main html2text amd64 1.3.2a-15 [104 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main gettext amd64 0.18.1.1-5ubuntu3 [1188 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:35 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main comerr-dev amd64 2.1-1.42-1ubuntu2 [42.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise-security/main krb5-multidev amd64 1.10+dfsg~beta1-2ubuntu0.3 [125 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu4 [165 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev amd64 2.4.8-1ubuntu2 [794 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8-dev amd64 1.1.90+svn733-0ubuntu4.1 [391 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8-dev amd64 8c-2ubuntu7 [1544 B] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libpng12-dev amd64 1.2.46-3ubuntu4 [207 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libgd2-noxpm-dev amd64 2.0.36~rc1~dfsg-6ubuntu2 [212 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise-security/main libmysqlclient-dev amd64 5.5.24-0ubuntu0.12.04.1 [1393 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise-security/main libpq5 amd64 9.1.5-0ubuntu12.04 [99.8 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise-security/main libssl-dev amd64 1.0.1-4ubuntu5.3 [1525 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-dev amd64 1.10+dfsg~beta1-2ubuntu0.3 [11.0 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise-security/main libpq-dev amd64 9.1.5-0ubuntu12.04 [215 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 amd64 0.3-3 [3258 B] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev amd64 0.3-3 [2866 B] Get:52 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev amd64 1:1.0.6-4 [10.5 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev amd64 1:1.1.0-4 [26.9 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev all 2.1.99.6-1 [133 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev all 1.0.5-2 [27.6 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev amd64 1.8.1-1 [81.6 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev amd64 2:1.4.99.1-0ubuntu2 [908 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/universe libhpdf-dev amd64 2.2.1-1 [38.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.0 MB in 0s (25.5 MB/s) Selecting previously unselected package libgssrpc4. (Reading database ... 12245 files and directories currently installed.) Unpacking libgssrpc4 (from .../libgssrpc4_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Selecting previously unselected package libkadm5clnt-mit8. Unpacking libkadm5clnt-mit8 (from .../libkadm5clnt-mit8_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Selecting previously unselected package libkdb5-6. Unpacking libkdb5-6 (from .../libkdb5-6_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Selecting previously unselected package libkadm5srv-mit8. Unpacking libkadm5srv-mit8 (from .../libkadm5srv-mit8_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_amd64.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8.1-1_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu2_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu2_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_amd64.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2ubuntu1.1_amd64.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1ubuntu2_amd64.deb) ... Selecting previously unselected package libjpeg-turbo8. Unpacking libjpeg-turbo8 (from .../libjpeg-turbo8_1.1.90+svn733-0ubuntu4.1_amd64.deb) ... Selecting previously unselected package libjpeg8. Unpacking libjpeg8 (from .../libjpeg8_8c-2ubuntu7_amd64.deb) ... Selecting previously unselected package libgd2-noxpm. Unpacking libgd2-noxpm (from .../libgd2-noxpm_2.0.36~rc1~dfsg-6ubuntu2_amd64.deb) ... Selecting previously unselected package libhpdf-2.2.1. Unpacking libhpdf-2.2.1 (from .../libhpdf-2.2.1_2.2.1-1_amd64.deb) ... Selecting previously unselected package emboss-lib. Unpacking emboss-lib (from .../emboss-lib_6.5.7-0ubuntu3_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.5.24-0ubuntu0.12.04.1_all.deb) ... Selecting previously unselected package libmysqlclient18. Unpacking libmysqlclient18 (from .../libmysqlclient18_5.5.24-0ubuntu0.12.04.1_amd64.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Selecting previously unselected package comerr-dev. Unpacking comerr-dev (from .../comerr-dev_2.1-1.42-1ubuntu2_amd64.deb) ... Selecting previously unselected package krb5-multidev. Unpacking krb5-multidev (from .../krb5-multidev_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_amd64.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.8-1ubuntu2_amd64.deb) ... Selecting previously unselected package libjpeg-turbo8-dev. Unpacking libjpeg-turbo8-dev (from .../libjpeg-turbo8-dev_1.1.90+svn733-0ubuntu4.1_amd64.deb) ... Selecting previously unselected package libjpeg8-dev. Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2ubuntu7_amd64.deb) ... Selecting previously unselected package libjpeg-dev. Unpacking libjpeg-dev (from .../libjpeg-dev_8c-2ubuntu7_all.deb) ... Selecting previously unselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3ubuntu4_amd64.deb) ... Selecting previously unselected package libgd2-noxpm-dev. Unpacking libgd2-noxpm-dev (from .../libgd2-noxpm-dev_2.0.36~rc1~dfsg-6ubuntu2_amd64.deb) ... Selecting previously unselected package libmysqlclient-dev. Unpacking libmysqlclient-dev (from .../libmysqlclient-dev_5.5.24-0ubuntu0.12.04.1_amd64.deb) ... Selecting previously unselected package libpq5. Unpacking libpq5 (from .../libpq5_9.1.5-0ubuntu12.04_amd64.deb) ... Selecting previously unselected package libssl-dev. Unpacking libssl-dev (from .../libssl-dev_1.0.1-4ubuntu5.3_amd64.deb) ... Selecting previously unselected package libkrb5-dev. Unpacking libkrb5-dev (from .../libkrb5-dev_1.10+dfsg~beta1-2ubuntu0.3_amd64.deb) ... Selecting previously unselected package libpq-dev. Unpacking libpq-dev (from .../libpq-dev_9.1.5-0ubuntu12.04_amd64.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-3_amd64.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-3_amd64.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.10-1_all.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.22-1_all.deb) ... Selecting previously unselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-4_amd64.deb) ... Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-4_amd64.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.1.99.6-1_all.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_all.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_all.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.8.1-1_amd64.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.99.1-0ubuntu2_amd64.deb) ... Selecting previously unselected package libhpdf-dev. Unpacking libhpdf-dev (from .../libhpdf-dev_2.2.1-1_amd64.deb) ... Setting up libgssrpc4 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkadm5clnt-mit8 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkdb5-6 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkadm5srv-mit8 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.8.1-1) ... Setting up libx11-data (2:1.4.99.1-0ubuntu2) ... Setting up libx11-6 (2:1.4.99.1-0ubuntu2) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libexpat1 (2.0.1-7.2ubuntu1.1) ... Setting up libfreetype6 (2.4.8-1ubuntu2) ... Setting up libjpeg-turbo8 (1.1.90+svn733-0ubuntu4.1) ... Setting up libjpeg8 (8c-2ubuntu7) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-6ubuntu2) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up emboss-lib (6.5.7-0ubuntu3) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up mysql-common (5.5.24-0ubuntu0.12.04.1) ... Setting up libmysqlclient18 (5.5.24-0ubuntu0.12.04.1) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up comerr-dev (2.1-1.42-1ubuntu2) ... Setting up krb5-multidev (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libfreetype6-dev (2.4.8-1ubuntu2) ... Setting up libjpeg-turbo8-dev (1.1.90+svn733-0ubuntu4.1) ... Setting up libjpeg8-dev (8c-2ubuntu7) ... Setting up libjpeg-dev (8c-2ubuntu7) ... Setting up libpng12-dev (1.2.46-3ubuntu4) ... Setting up libgd2-noxpm-dev (2.0.36~rc1~dfsg-6ubuntu2) ... Setting up libmysqlclient-dev (5.5.24-0ubuntu0.12.04.1) ... Setting up libpq5 (9.1.5-0ubuntu12.04) ... Setting up libssl-dev (1.0.1-4ubuntu5.3) ... Setting up libkrb5-dev (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libpq-dev (9.1.5-0ubuntu12.04) ... Setting up libpthread-stubs0 (0.3-3) ... Setting up libpthread-stubs0-dev (0.3-3) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-4) ... Setting up libxdmcp-dev (1:1.1.0-4) ... Setting up x11proto-input-dev (2.1.99.6-1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libxcb1-dev (1.8.1-1) ... Setting up libx11-dev (2:1.4.99.1-0ubuntu2) ... Setting up libhpdf-dev (2.2.1-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Aug 28 11:55:03 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./embassy-domalign_0.1.650-0ubuntu1.dsc dpkg-source: info: extracting embassy-domalign in embassy-domalign-0.1.650 dpkg-source: info: unpacking embassy-domalign_0.1.650.orig.tar.gz dpkg-source: info: unpacking embassy-domalign_0.1.650-0ubuntu1.debian.tar.gz dpkg-buildpackage: source package embassy-domalign dpkg-buildpackage: source version 0.1.650-0ubuntu1 dpkg-source --before-build embassy-domalign-0.1.650 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build dh build dh_testdir debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' dh_auto_configure -- --enable-systemlibs configure: WARNING: unrecognized options: --disable-maintainer-mode checking for gawk... no checking for mawk... mawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... yes PDF support found checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... no checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... no checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' dh_auto_build make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' Making all in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' make all-am make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c allversusall.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o allversusall allversusall.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lhpdf -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o allversusall allversusall.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lhpdf -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c domainalign.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o domainalign domainalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lhpdf -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o domainalign domainalign.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lhpdf -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c domainrep.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o domainrep domainrep.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lhpdf -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o domainrep domainrep.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lhpdf -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqalign.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqalign seqalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lhpdf -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqalign seqalign.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lhpdf -lgd -lpng -lz -lm make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' Making all in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' Making all in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' Making all in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' Making all in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' dh_auto_test make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' Making check in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' Making check in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' Making check in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' Making check in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' Making check in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' Making install in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c allversusall domainalign domainrep seqalign '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin' libtool: install: /usr/bin/install -c allversusall /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/allversusall libtool: install: /usr/bin/install -c domainalign /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/domainalign libtool: install: /usr/bin/install -c domainrep /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/domainrep libtool: install: /usr/bin/install -c seqalign /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/seqalign make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' Making install in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/acd" /usr/bin/install -c -m 644 allversusall.acd domainalign.acd domainrep.acd seqalign.acd '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/acd' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' Making install in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' Making install in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/html/embassy/domalign" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/html/embassy/domalign" /usr/bin/install -c -m 644 index.html allversusall.html domainalign.html domainrep.html seqalign.html '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/html/embassy/domalign' make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' Making install in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/programs/text" /usr/bin/install -c -m 644 allversusall.txt domainalign.txt domainrep.txt seqalign.txt '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/programs/text' make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: dependency on libX11.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libensembl.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libepcre.so.7 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxdb.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxg.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `embassy-domalign' in `../embassy-domalign_0.1.650-0ubuntu1_amd64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../embassy-domalign_0.1.650-0ubuntu1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build embassy-domalign-0.1.650 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120828-1248 chroot-autobuild/build/buildd/embassy-domalign_0.1.650-0ubuntu1_amd64.deb: new debian package, version 2.0. size 114772 bytes: control archive= 1501 bytes. 990 bytes, 21 lines control 1807 bytes, 24 lines md5sums Package: embassy-domalign Version: 0.1.650-0ubuntu1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 638 Depends: emboss-lib (>= 6.5.7), libc6 (>= 2.2.5), libx11-6, emboss-lib (<< 6.6.0~) Recommends: emboss Suggests: embassy Section: science Priority: optional Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Description: Extra EMBOSS commands for protein domain alignment The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. . Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)). chroot-autobuild/build/buildd/embassy-domalign_0.1.650-0ubuntu1_amd64.deb: drwxr-xr-x root/root 0 2012-08-28 12:48 ./ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/doc/embassy-domalign/ -rw-r--r-- root/root 1238 2012-08-24 14:14 ./usr/share/doc/embassy-domalign/copyright -rw-r--r-- root/root 1446 2012-08-28 11:54 ./usr/share/doc/embassy-domalign/changelog.Debian.gz drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/man/man1/ -rw-r--r-- root/root 1749 2012-08-28 12:48 ./usr/share/man/man1/allversusall.1e.gz -rw-r--r-- root/root 1951 2012-08-28 12:48 ./usr/share/man/man1/domainalign.1e.gz -rw-r--r-- root/root 1899 2012-08-28 12:48 ./usr/share/man/man1/seqalign.1e.gz -rw-r--r-- root/root 1413 2012-08-28 12:48 ./usr/share/man/man1/domainrep.1e.gz drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/acd/ -rw-r--r-- root/root 6584 2012-08-28 12:48 ./usr/share/EMBOSS/acd/seqalign.acd -rw-r--r-- root/root 3811 2012-08-28 12:48 ./usr/share/EMBOSS/acd/allversusall.acd -rw-r--r-- root/root 6073 2012-08-28 12:48 ./usr/share/EMBOSS/acd/domainalign.acd -rw-r--r-- root/root 2821 2012-08-28 12:48 ./usr/share/EMBOSS/acd/domainrep.acd drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/doc/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/domalign/ -rw-r--r-- root/root 28788 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/domalign/domainrep.html -rw-r--r-- root/root 22841 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/domalign/allversusall.html -rw-r--r-- root/root 282854 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/domalign/seqalign.html -rw-r--r-- root/root 72774 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/domalign/domainalign.html -rw-r--r-- root/root 1958 2012-08-28 12:48 ./usr/share/EMBOSS/doc/html/embassy/domalign/index.html drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/doc/programs/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/EMBOSS/doc/programs/text/ -rw-r--r-- root/root 30650 2012-08-28 12:48 ./usr/share/EMBOSS/doc/programs/text/domainalign.txt -rw-r--r-- root/root 23698 2012-08-28 12:48 ./usr/share/EMBOSS/doc/programs/text/seqalign.txt -rw-r--r-- root/root 6260 2012-08-28 12:48 ./usr/share/EMBOSS/doc/programs/text/allversusall.txt -rw-r--r-- root/root 8773 2012-08-28 12:48 ./usr/share/EMBOSS/doc/programs/text/domainrep.txt drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 182 2012-08-24 14:14 ./usr/share/lintian/overrides/embassy-domalign drwxr-xr-x root/root 0 2012-08-28 12:48 ./usr/bin/ -rwxr-xr-x root/root 22976 2012-08-28 12:48 ./usr/bin/domainalign -rwxr-xr-x root/root 18896 2012-08-28 12:48 ./usr/bin/seqalign -rwxr-xr-x root/root 14672 2012-08-28 12:48 ./usr/bin/domainrep -rwxr-xr-x root/root 10512 2012-08-28 12:48 ./usr/bin/allversusall embassy-domalign_0.1.650-0ubuntu1_amd64.changes: Format: 1.8 Date: Tue, 28 Aug 2012 12:53:56 +0100 Source: embassy-domalign Binary: embassy-domalign Architecture: amd64 Version: 0.1.650-0ubuntu1 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Tim Booth Description: embassy-domalign - Extra EMBOSS commands for protein domain alignment Changes: embassy-domalign (0.1.650-0ubuntu1) precise; urgency=low . * New upstream release * Depend on newer EMBOSS release 6.5.x * Switch build dep to libgd2-noxpm-dev to match my EMBOSS build * Add build dependency on libpng12, libhpdf Checksums-Sha1: ef8f7f196b4a0f432262e9e27461e5228f7bcbb0 114772 embassy-domalign_0.1.650-0ubuntu1_amd64.deb Checksums-Sha256: d0dcae216d7443e3f6491ce869635c144b4267c4c62a5cd43d91d13b997de16d 114772 embassy-domalign_0.1.650-0ubuntu1_amd64.deb Files: b48521b7ef571d8887a16db7e8c0f121 114772 science optional embassy-domalign_0.1.650-0ubuntu1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120828-1248 Build needed 00:00:16, 4236k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '4b4fb23924bbea2374fd80ed99723db65c09528c'] Scanning for processes to kill in build /home/buildd/build-4b4fb23924bbea2374fd80ed99723db65c09528c/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '4b4fb23924bbea2374fd80ed99723db65c09528c'] Unmounting chroot for build 4b4fb23924bbea2374fd80ed99723db65c09528c... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '4b4fb23924bbea2374fd80ed99723db65c09528c'] Removing build 4b4fb23924bbea2374fd80ed99723db65c09528c