RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-31-xen #1 SMP Tue Jun 12 20:10:18 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 4 Sep 14:29:25 ntpdate[3366]: step time server 10.211.37.1 offset -608291.229535 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '162c5ff44dec512ac5c24632eabd0468abfa7a5e', '/home/buildd/filecache-default/8eacd1245734d394a672d9a8221787a881f94c87'] Uncompressing the tarball... Unpacking chroot for build 162c5ff44dec512ac5c24632eabd0468abfa7a5e RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '162c5ff44dec512ac5c24632eabd0468abfa7a5e'] Mounting chroot for build 162c5ff44dec512ac5c24632eabd0468abfa7a5e RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '162c5ff44dec512ac5c24632eabd0468abfa7a5e', 'deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu precise main', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu precise-updates main restricted universe multiverse'] Overriding sources.list in build-162c5ff44dec512ac5c24632eabd0468abfa7a5e RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '162c5ff44dec512ac5c24632eabd0468abfa7a5e', 'i386'] Updating debian chroot for build 162c5ff44dec512ac5c24632eabd0468abfa7a5e Ign http://ppa.launchpad.net precise InRelease Ign http://ftpmaster.internal precise InRelease Ign http://ftpmaster.internal precise-security InRelease Ign http://ftpmaster.internal precise-updates InRelease Get:1 http://ppa.launchpad.net precise Release.gpg [316 B] Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise-security Release.gpg [198 B] Get:4 http://ppa.launchpad.net precise Release [11.9 kB] Get:5 http://ftpmaster.internal precise-updates Release.gpg [198 B] Get:6 http://ftpmaster.internal precise Release [49.6 kB] Get:7 http://ftpmaster.internal precise-security Release [49.6 kB] Get:8 http://ftpmaster.internal precise-updates Release [49.6 kB] Ign http://ppa.launchpad.net precise Release Get:9 http://ppa.launchpad.net precise/main i386 Packages [15.3 kB] Ign http://ppa.launchpad.net precise/main TranslationIndex Get:10 http://ftpmaster.internal precise/main i386 Packages [1274 kB] Ign http://ppa.launchpad.net precise/main Translation-en Get:11 http://ftpmaster.internal precise/restricted i386 Packages [8431 B] Get:12 http://ftpmaster.internal precise/universe i386 Packages [4796 kB] Get:13 http://ftpmaster.internal precise/multiverse i386 Packages [121 kB] Get:14 http://ftpmaster.internal precise/main TranslationIndex [3706 B] Get:15 http://ftpmaster.internal precise/multiverse TranslationIndex [2676 B] Get:16 http://ftpmaster.internal precise/restricted TranslationIndex [2596 B] Get:17 http://ftpmaster.internal precise/universe TranslationIndex [2922 B] Get:18 http://ftpmaster.internal precise-security/main i386 Packages [161 kB] Get:19 http://ftpmaster.internal precise-security/restricted i386 Packages [3968 B] Get:20 http://ftpmaster.internal precise-security/universe i386 Packages [41.4 kB] Get:21 http://ftpmaster.internal precise-security/multiverse i386 Packages [2369 B] Get:22 http://ftpmaster.internal precise-security/main TranslationIndex [73 B] Get:23 http://ftpmaster.internal precise-security/multiverse TranslationIndex [71 B] Get:24 http://ftpmaster.internal precise-security/restricted TranslationIndex [71 B] Get:25 http://ftpmaster.internal precise-security/universe TranslationIndex [73 B] Get:26 http://ftpmaster.internal precise-updates/main i386 Packages [378 kB] Get:27 http://ftpmaster.internal precise-updates/restricted i386 Packages [6732 B] Get:28 http://ftpmaster.internal precise-updates/universe i386 Packages [127 kB] Get:29 http://ftpmaster.internal precise-updates/multiverse i386 Packages [9672 B] Get:30 http://ftpmaster.internal precise-updates/main TranslationIndex [3564 B] Get:31 http://ftpmaster.internal precise-updates/multiverse TranslationIndex [2605 B] Get:32 http://ftpmaster.internal precise-updates/restricted TranslationIndex [2461 B] Get:33 http://ftpmaster.internal precise-updates/universe TranslationIndex [2850 B] Get:34 http://ftpmaster.internal precise/main Translation-en [726 kB] Get:35 http://ftpmaster.internal precise/multiverse Translation-en [93.4 kB] Get:36 http://ftpmaster.internal precise/restricted Translation-en [2395 B] Get:37 http://ftpmaster.internal precise/universe Translation-en [3341 kB] Get:38 http://ftpmaster.internal precise-security/main Translation-en [74.6 kB] Get:39 http://ftpmaster.internal precise-security/multiverse Translation-en [995 B] Get:40 http://ftpmaster.internal precise-security/restricted Translation-en [978 B] Get:41 http://ftpmaster.internal precise-security/universe Translation-en [25.6 kB] Get:42 http://ftpmaster.internal precise-updates/main Translation-en [181 kB] Get:43 http://ftpmaster.internal precise-updates/multiverse Translation-en [5414 B] Get:44 http://ftpmaster.internal precise-updates/restricted Translation-en [1484 B] Get:45 http://ftpmaster.internal precise-updates/universe Translation-en [75.6 kB] Fetched 11.7 MB in 7s (1630 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net precise Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 759A8E0E5BA15160 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files initscripts libapt-pkg4.12 libgcrypt11 libglib2.0-0 libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsasl2-2 libsqlite3-0 libssl1.0.0 libtasn1-3 libudev0 linux-libc-dev openssl perl perl-base perl-modules python2.7-minimal sysv-rc sysvinit-utils tzdata udev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files perl perl-base perl-modules libapt-pkg4.12 apt libssl1.0.0 libsqlite3-0 libglib2.0-0 libudev0 libgcrypt11 libtasn1-3 libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 python2.7-minimal tzdata sysvinit-utils sysv-rc initscripts upstart udev apt-transport-https linux-libc-dev openssl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise-updates/main base-files i386 6.5ubuntu6.2 [65.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-updates/main perl i386 5.14.2-6ubuntu2.1 [3685 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-base i386 5.14.2-6ubuntu2.1 [1472 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-updates/main perl-modules all 5.14.2-6ubuntu2.1 [3396 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libapt-pkg4.12 i386 0.8.16~exp12ubuntu10.2 [940 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise-security/main apt i386 0.8.16~exp12ubuntu10.2 [1102 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise-security/main libssl1.0.0 i386 1.0.1-4ubuntu5.3 [1006 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise-updates/main libsqlite3-0 i386 3.7.9-2ubuntu1.1 [354 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise-updates/main libglib2.0-0 i386 2.32.3-0ubuntu1 [1187 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise-updates/main libudev0 i386 175-0ubuntu9.1 [33.6 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise-updates/main libgcrypt11 i386 1.5.0-3ubuntu0.1 [281 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libtasn1-3 i386 2.10-1ubuntu1.1 [43.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-updates/main libgnutls26 i386 2.12.14-5ubuntu3.1 [448 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise-security/main libk5crypto3 i386 1.10+dfsg~beta1-2ubuntu0.3 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-security/main libgssapi-krb5-2 i386 1.10+dfsg~beta1-2ubuntu0.3 [120 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-3 i386 1.10+dfsg~beta1-2ubuntu0.3 [366 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5support0 i386 1.10+dfsg~beta1-2ubuntu0.3 [23.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise-updates/main libsasl2-2 i386 2.1.25.dfsg1-3ubuntu0.1 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise-updates/main libldap-2.4-2 i386 2.4.28-1.1ubuntu4.1 [186 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise-updates/main python2.7-minimal i386 2.7.3-0ubuntu3.1 [1693 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise-updates/main tzdata all 2012e-0ubuntu0.12.04 [438 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-updates/main sysvinit-utils i386 2.88dsf-13.10ubuntu11.1 [58.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-updates/main sysv-rc all 2.88dsf-13.10ubuntu11.1 [44.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise-updates/main initscripts i386 2.88dsf-13.10ubuntu11.1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise-updates/main upstart i386 1.5-0ubuntu7 [313 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise-updates/main udev i386 175-0ubuntu9.1 [349 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise-security/main apt-transport-https i386 0.8.16~exp12ubuntu10.2 [16.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise-security/main linux-libc-dev i386 3.2.0-29.46 [871 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise-security/main openssl i386 1.0.1-4ubuntu5.3 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 1s (17.5 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu6 (using .../base-files_6.5ubuntu6.2_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu6.2) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl 5.14.2-6ubuntu2 (using .../perl_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-6ubuntu2 (using .../perl-base_5.14.2-6ubuntu2.1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-6ubuntu2.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-6ubuntu2 (using .../perl-modules_5.14.2-6ubuntu2.1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libapt-pkg4.12 0.8.16~exp12ubuntu10 (using .../libapt-pkg4.12_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement libapt-pkg4.12 ... Setting up libapt-pkg4.12 (0.8.16~exp12ubuntu10.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace apt 0.8.16~exp12ubuntu10 (using .../apt_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp12ubuntu10.2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 12281 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12281 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.9-2ubuntu1.1_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.3-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libudev0 175-0ubuntu9 (using .../libudev0_175-0ubuntu9.1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgcrypt11 1.5.0-3 (using .../libgcrypt11_1.5.0-3ubuntu0.1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.10-1ubuntu1.1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.12.14-5ubuntu3 (using .../libgnutls26_2.12.14-5ubuntu3.1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.10+dfsg~beta1-2 (using .../libk5crypto3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.10+dfsg~beta1-2 (using .../libgssapi-krb5-2_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.10+dfsg~beta1-2 (using .../libkrb5-3_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.10+dfsg~beta1-2 (using .../libkrb5support0_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-3ubuntu0.1_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.28-1.1ubuntu4 (using .../libldap-2.4-2_2.4.28-1.1ubuntu4.1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace python2.7-minimal 2.7.3-0ubuntu3 (using .../python2.7-minimal_2.7.3-0ubuntu3.1_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.3-0ubuntu3.1) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace tzdata 2012b-1 (using .../tzdata_2012e-0ubuntu0.12.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2012e-0ubuntu0.12.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 28 13:32:22 UTC 2012. Universal Time is now: Tue Aug 28 13:32:22 UTC 2012. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12281 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu11 (using .../sysvinit-utils_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu11 (using .../sysv-rc_2.88dsf-13.10ubuntu11.1_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu11 (using .../initscripts_2.88dsf-13.10ubuntu11.1_i386.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_i386.deb) ... Unpacking replacement upstart ... Preparing to replace udev 175-0ubuntu9 (using .../udev_175-0ubuntu9.1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace apt-transport-https 0.8.16~exp12ubuntu10 (using .../apt-transport-https_0.8.16~exp12ubuntu10.2_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev 3.2.0-23.36 (using .../linux-libc-dev_3.2.0-29.46_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5.3_i386.deb) ... Unpacking replacement openssl ... Setting up libsqlite3-0 (3.7.9-2ubuntu1.1) ... Setting up libglib2.0-0 (2.32.3-0ubuntu1) ... No schema files found: doing nothing. Setting up libudev0 (175-0ubuntu9.1) ... Setting up libgcrypt11 (1.5.0-3ubuntu0.1) ... Setting up libtasn1-3 (2.10-1ubuntu1.1) ... Setting up libgnutls26 (2.12.14-5ubuntu3.1) ... Setting up libkrb5support0 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libk5crypto3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkrb5-3 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libgssapi-krb5-2 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libsasl2-2 (2.1.25.dfsg1-3ubuntu0.1) ... Setting up libldap-2.4-2 (2.4.28-1.1ubuntu4.1) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu11.1) ... Setting up sysv-rc (2.88dsf-13.10ubuntu11.1) ... Setting up apt-transport-https (0.8.16~exp12ubuntu10.2) ... Setting up linux-libc-dev (3.2.0-29.46) ... Setting up openssl (1.0.1-4ubuntu5.3) ... Setting up perl-modules (5.14.2-6ubuntu2.1) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up udev (175-0ubuntu9.1) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up perl (5.14.2-6ubuntu2.1) ... Setting up initscripts (2.88dsf-13.10ubuntu11.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '162c5ff44dec512ac5c24632eabd0468abfa7a5e', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'embassy-domsearch_0.1.650-1ubuntu3.dsc'] Initiating build 162c5ff44dec512ac5c24632eabd0468abfa7a5e with 1 jobs across 1 processor cores. Automatic build of embassy-domsearch_0.1.650-1ubuntu3 on marid by sbuild/i386 1.170.5 Build started at 20120828-1332 ****************************************************************************** embassy-domsearch_0.1.650-1ubuntu3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: libgd2-noxpm-dev, debhelper (>= 9), emboss-lib (>= 6.5.7), emboss-lib (<< 6.6.0~), libx11-dev, libmysqlclient-dev, libpq-dev, dh-autoreconf Checking for already installed source dependencies... libgd2-noxpm-dev: missing debhelper: missing emboss-lib: missing emboss-lib: missing libx11-dev: missing libmysqlclient-dev: missing libpq-dev: missing dh-autoreconf: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install libgd2-noxpm-dev debhelper emboss-lib emboss-lib libx11-dev libmysqlclient-dev libpq-dev dh-autoreconf Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils comerr-dev dh-apparmor file gettext gettext-base groff-base html2text intltool-debian krb5-multidev libcroco3 libexpat1 libfreetype6 libfreetype6-dev libgd2-noxpm libgettextpo0 libgssrpc4 libhpdf-2.2.1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libmagic1 libmysqlclient18 libpipeline1 libpng12-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libssl-dev libtool libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 m4 man-db mysql-common po-debconf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation doc-base dh-make gettext-doc groff krb5-doc libgd-tools krb5-user postgresql-doc-9.1 libtool-doc automaken gfortran fortran95-compiler gcj libxcb-doc less www-browser libmail-box-perl Recommended packages: autopoint curl wget lynx-cur libssl-doc libltdl-dev libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils comerr-dev debhelper dh-apparmor dh-autoreconf emboss-lib file gettext gettext-base groff-base html2text intltool-debian krb5-multidev libcroco3 libexpat1 libfreetype6 libfreetype6-dev libgd2-noxpm libgd2-noxpm-dev libgettextpo0 libgssrpc4 libhpdf-2.2.1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-6 libkrb5-dev libmagic1 libmysqlclient-dev libmysqlclient18 libpipeline1 libpng12-dev libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libssl-dev libtool libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 m4 man-db mysql-common po-debconf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 20.4 MB of archives. After this operation, 71.9 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgssrpc4 libkadm5clnt-mit8 libkdb5-6 libkadm5srv-mit8 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxml2 libexpat1 libfreetype6 libjpeg-turbo8 libjpeg8 libgd2-noxpm libhpdf-2.2.1 emboss-lib libcroco3 libunistring0 libgettextpo0 mysql-common libmysqlclient18 libmagic1 file bsdmainutils gettext-base groff-base man-db m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf dh-apparmor debhelper libtool dh-autoreconf comerr-dev krb5-multidev zlib1g-dev libfreetype6-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev libpng12-dev libgd2-noxpm-dev libmysqlclient-dev libpq5 libssl-dev libkrb5-dev libpq-dev libpthread-stubs0 libpthread-stubs0-dev xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libxcb1-dev libx11-dev Authentication warning overridden. Get:1 http://ppa.launchpad.net/nebc/bio-linux/ubuntu/ precise/main emboss-lib i386 6.5.7-0ubuntu3 [3031 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise-security/main libgssrpc4 i386 1.10+dfsg~beta1-2ubuntu0.3 [57.7 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise-security/main libkadm5clnt-mit8 i386 1.10+dfsg~beta1-2ubuntu0.3 [38.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise-security/main libkdb5-6 i386 1.10+dfsg~beta1-2ubuntu0.3 [37.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise-security/main libkadm5srv-mit8 i386 1.10+dfsg~beta1-2ubuntu0.3 [54.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-4 [8344 B] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-4 [13.0 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.8.1-1 [48.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.99.1-0ubuntu2 [770 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise-security/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4.1 [662 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise-security/main libexpat1 i386 2.0.1-7.2ubuntu1.1 [130 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.8-1ubuntu2 [345 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu4.1 [118 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu7 [2112 B] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libgd2-noxpm i386 2.0.36~rc1~dfsg-6ubuntu2 [199 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/universe libhpdf-2.2.1 i386 2.2.1-1 [500 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise-security/main mysql-common all 5.5.24-0ubuntu0.12.04.1 [13.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise-security/main libmysqlclient18 i386 5.5.24-0ubuntu0.12.04.1 [921 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-7 [1024 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.1-2 [747 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main m4 i386 1.4.16-2ubuntu1 [195 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main autoconf all 2.68-1ubuntu2 [560 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main automake all 1:1.11.3-1ubuntu2 [571 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.1 [9546 B] Get:39 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libtool i386 2.4.2-1ubuntu1 [302 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main dh-autoreconf all 5ubuntu1 [14.7 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main comerr-dev i386 2.1-1.42-1ubuntu2 [42.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise-security/main krb5-multidev i386 1.10+dfsg~beta1-2ubuntu0.3 [125 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev i386 2.4.8-1ubuntu2 [778 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise-updates/main libjpeg-turbo8-dev i386 1.1.90+svn733-0ubuntu4.1 [414 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8-dev i386 8c-2ubuntu7 [1544 B] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-dev all 8c-2ubuntu7 [1536 B] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libpng12-dev i386 1.2.46-3ubuntu4 [207 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libgd2-noxpm-dev i386 2.0.36~rc1~dfsg-6ubuntu2 [208 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise-security/main libmysqlclient-dev i386 5.5.24-0ubuntu0.12.04.1 [1358 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise-security/main libpq5 i386 9.1.5-0ubuntu12.04 [100 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise-security/main libssl-dev i386 1.0.1-4ubuntu5.3 [1418 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise-security/main libkrb5-dev i386 1.10+dfsg~beta1-2ubuntu0.3 [11.0 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise-security/main libpq-dev i386 9.1.5-0ubuntu12.04 [215 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 i386 0.3-3 [3264 B] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev i386 0.3-3 [2860 B] Get:58 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev i386 1:1.0.6-4 [10.2 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev i386 1:1.1.0-4 [26.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev all 2.1.99.6-1 [133 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev all 1.0.5-2 [27.6 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev i386 1.8.1-1 [82.4 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev i386 2:1.4.99.1-0ubuntu2 [894 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.4 MB in 1s (18.0 MB/s) Selecting previously unselected package libgssrpc4. (Reading database ... 12283 files and directories currently installed.) Unpacking libgssrpc4 (from .../libgssrpc4_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libkadm5clnt-mit8. Unpacking libkadm5clnt-mit8 (from .../libkadm5clnt-mit8_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libkdb5-6. Unpacking libkdb5-6 (from .../libkdb5-6_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libkadm5srv-mit8. Unpacking libkadm5srv-mit8 (from .../libkadm5srv-mit8_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_i386.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8.1-1_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu2_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu2_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4.1_i386.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2ubuntu1.1_i386.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1ubuntu2_i386.deb) ... Selecting previously unselected package libjpeg-turbo8. Unpacking libjpeg-turbo8 (from .../libjpeg-turbo8_1.1.90+svn733-0ubuntu4.1_i386.deb) ... Selecting previously unselected package libjpeg8. Unpacking libjpeg8 (from .../libjpeg8_8c-2ubuntu7_i386.deb) ... Selecting previously unselected package libgd2-noxpm. Unpacking libgd2-noxpm (from .../libgd2-noxpm_2.0.36~rc1~dfsg-6ubuntu2_i386.deb) ... Selecting previously unselected package libhpdf-2.2.1. Unpacking libhpdf-2.2.1 (from .../libhpdf-2.2.1_2.2.1-1_i386.deb) ... Selecting previously unselected package emboss-lib. Unpacking emboss-lib (from .../emboss-lib_6.5.7-0ubuntu3_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.5.24-0ubuntu0.12.04.1_all.deb) ... Selecting previously unselected package libmysqlclient18. Unpacking libmysqlclient18 (from .../libmysqlclient18_5.5.24-0ubuntu0.12.04.1_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../m4_1.4.16-2ubuntu1_i386.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1ubuntu2_all.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.11.3-1ubuntu2_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Selecting previously unselected package libtool. Unpacking libtool (from .../libtool_2.4.2-1ubuntu1_i386.deb) ... Selecting previously unselected package dh-autoreconf. Unpacking dh-autoreconf (from .../dh-autoreconf_5ubuntu1_all.deb) ... Selecting previously unselected package comerr-dev. Unpacking comerr-dev (from .../comerr-dev_2.1-1.42-1ubuntu2_i386.deb) ... Selecting previously unselected package krb5-multidev. Unpacking krb5-multidev (from .../krb5-multidev_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_i386.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.8-1ubuntu2_i386.deb) ... Selecting previously unselected package libjpeg-turbo8-dev. Unpacking libjpeg-turbo8-dev (from .../libjpeg-turbo8-dev_1.1.90+svn733-0ubuntu4.1_i386.deb) ... Selecting previously unselected package libjpeg8-dev. Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2ubuntu7_i386.deb) ... Selecting previously unselected package libjpeg-dev. Unpacking libjpeg-dev (from .../libjpeg-dev_8c-2ubuntu7_all.deb) ... Selecting previously unselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3ubuntu4_i386.deb) ... Selecting previously unselected package libgd2-noxpm-dev. Unpacking libgd2-noxpm-dev (from .../libgd2-noxpm-dev_2.0.36~rc1~dfsg-6ubuntu2_i386.deb) ... Selecting previously unselected package libmysqlclient-dev. Unpacking libmysqlclient-dev (from .../libmysqlclient-dev_5.5.24-0ubuntu0.12.04.1_i386.deb) ... Selecting previously unselected package libpq5. Unpacking libpq5 (from .../libpq5_9.1.5-0ubuntu12.04_i386.deb) ... Selecting previously unselected package libssl-dev. Unpacking libssl-dev (from .../libssl-dev_1.0.1-4ubuntu5.3_i386.deb) ... Selecting previously unselected package libkrb5-dev. Unpacking libkrb5-dev (from .../libkrb5-dev_1.10+dfsg~beta1-2ubuntu0.3_i386.deb) ... Selecting previously unselected package libpq-dev. Unpacking libpq-dev (from .../libpq-dev_9.1.5-0ubuntu12.04_i386.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-3_i386.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-3_i386.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.10-1_all.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.22-1_all.deb) ... Selecting previously unselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-4_i386.deb) ... Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-4_i386.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.1.99.6-1_all.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_all.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_all.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.8.1-1_i386.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.99.1-0ubuntu2_i386.deb) ... Setting up libgssrpc4 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkadm5clnt-mit8 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkdb5-6 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libkadm5srv-mit8 (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.8.1-1) ... Setting up libx11-data (2:1.4.99.1-0ubuntu2) ... Setting up libx11-6 (2:1.4.99.1-0ubuntu2) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4.1) ... Setting up libexpat1 (2.0.1-7.2ubuntu1.1) ... Setting up libfreetype6 (2.4.8-1ubuntu2) ... Setting up libjpeg-turbo8 (1.1.90+svn733-0ubuntu4.1) ... Setting up libjpeg8 (8c-2ubuntu7) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-6ubuntu2) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up emboss-lib (6.5.7-0ubuntu3) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up mysql-common (5.5.24-0ubuntu0.12.04.1) ... Setting up libmysqlclient18 (5.5.24-0ubuntu0.12.04.1) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20120210.1ubuntu1) ... Setting up automake (1:1.11.3-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.1) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up libtool (2.4.2-1ubuntu1) ... Setting up dh-autoreconf (5ubuntu1) ... Setting up comerr-dev (2.1-1.42-1ubuntu2) ... Setting up krb5-multidev (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libfreetype6-dev (2.4.8-1ubuntu2) ... Setting up libjpeg-turbo8-dev (1.1.90+svn733-0ubuntu4.1) ... Setting up libjpeg8-dev (8c-2ubuntu7) ... Setting up libjpeg-dev (8c-2ubuntu7) ... Setting up libpng12-dev (1.2.46-3ubuntu4) ... Setting up libgd2-noxpm-dev (2.0.36~rc1~dfsg-6ubuntu2) ... Setting up libmysqlclient-dev (5.5.24-0ubuntu0.12.04.1) ... Setting up libpq5 (9.1.5-0ubuntu12.04) ... Setting up libssl-dev (1.0.1-4ubuntu5.3) ... Setting up libkrb5-dev (1.10+dfsg~beta1-2ubuntu0.3) ... Setting up libpq-dev (9.1.5-0ubuntu12.04) ... Setting up libpthread-stubs0 (0.3-3) ... Setting up libpthread-stubs0-dev (0.3-3) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-4) ... Setting up libxdmcp-dev (1:1.1.0-4) ... Setting up x11proto-input-dev (2.1.99.6-1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libxcb1-dev (1.8.1-1) ... Setting up libx11-dev (2:1.4.99.1-0ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu7 gcc-4.6_4.6.3-1ubuntu5 g++-4.6_4.6.3-1ubuntu5 binutils_2.22-6ubuntu1 libstdc++6-4.6-dev_4.6.3-1ubuntu5 libstdc++6_4.6.3-1ubuntu5 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Aug 28 13:27:42 2012 UTC using DSA key ID 113960C5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./embassy-domsearch_0.1.650-1ubuntu3.dsc dpkg-source: info: extracting embassy-domsearch in embassy-domsearch-0.1.650 dpkg-source: info: unpacking embassy-domsearch_0.1.650.orig.tar.gz dpkg-source: info: unpacking embassy-domsearch_0.1.650-1ubuntu3.debian.tar.gz dpkg-buildpackage: source package embassy-domsearch dpkg-buildpackage: source version 1:0.1.650-1ubuntu3 dpkg-source --before-build embassy-domsearch-0.1.650 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' dh_auto_clean rm -f src/*.in make[1]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' dh_autoreconf_clean dh_clean debian/rules build dh build --with autoreconf dh_testdir dh_autoreconf libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./config.guess' libtoolize: copying file `./config.sub' libtoolize: copying file `./install-sh' libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: copying file `m4/libtool.m4' libtoolize: copying file `m4/ltoptions.m4' libtoolize: copying file `m4/ltsugar.m4' libtoolize: copying file `m4/ltversion.m4' libtoolize: copying file `m4/lt~obsolete.m4' debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' dh_auto_configure -- --enable-systemlibs configure: WARNING: unrecognized options: --disable-maintainer-mode checking for gawk... no checking for mawk... mawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... no checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... no checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' dh_auto_build make[1]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' Making all in src make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/src' make all-am make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqnr.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqnr seqnr.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqnr seqnr.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqsearch.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqsearch seqsearch.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqsearch seqsearch.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqfraggle.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqfraggle seqfraggle.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqfraggle seqfraggle.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqsort.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqsort seqsort.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqsort seqsort.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqwords.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqwords seqwords.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqwords seqwords.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/src' Making all in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' Making all in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' Making all in html make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' Making all in text make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' dh_auto_test make[1]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' Making check in src make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/src' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/src' Making check in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' Making check in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' Making check in html make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' Making check in text make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' /usr/bin/fakeroot debian/rules binary dh binary --with autoreconf dh_testroot dh_prep dh_installdirs dh_auto_install make[1]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' Making install in src make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/src' make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c seqnr seqsearch seqfraggle seqsort seqwords '/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin' libtool: install: /usr/bin/install -c seqnr /build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin/seqnr libtool: install: /usr/bin/install -c seqsearch /build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin/seqsearch libtool: install: /usr/bin/install -c seqfraggle /build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin/seqfraggle libtool: install: /usr/bin/install -c seqsort /build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin/seqsort libtool: install: /usr/bin/install -c seqwords /build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/bin/seqwords make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/src' Making install in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/share/EMBOSS/acd" /usr/bin/install -c -m 644 seqnr.acd seqsearch.acd seqfraggle.acd seqsort.acd seqwords.acd '/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/share/EMBOSS/acd' make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_acd' Making install in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' Making install in html make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' make[4]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/html/embassy/domsearch" || /bin/mkdir -p "/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/share/EMBOSS/doc/html/embassy/domsearch" /usr/bin/install -c -m 644 index.html seqfraggle.html seqnr.html seqsearch.html seqsort.html seqwords.html '/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/share/EMBOSS/doc/html/embassy/domsearch' make[4]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/html' Making install in text make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[4]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/share/EMBOSS/doc/programs/text" /usr/bin/install -c -m 644 seqfraggle.txt seqnr.txt seqsearch.txt seqsort.txt seqwords.txt '/build/buildd/embassy-domsearch-0.1.650/debian/embassy-domsearch/usr/share/EMBOSS/doc/programs/text' make[4]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[4]: Entering directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' make[3]: Entering directory `/build/buildd/embassy-domsearch-0.1.650' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' make[2]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domsearch-0.1.650' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_installcatalogs dh_installcron dh_installdebconf dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installwm dh_installxfonts dh_installgsettings dh_bugfiles dh_ucf dh_lintian dh_gconf dh_icons dh_perl dh_usrlocal dh_link dh_compress dh_fixperms dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: dependency on libX11.so.6 could be avoided if "debian/embassy-domsearch/usr/bin/seqnr debian/embassy-domsearch/usr/bin/seqfraggle debian/embassy-domsearch/usr/bin/seqwords debian/embassy-domsearch/usr/bin/seqsearch debian/embassy-domsearch/usr/bin/seqsort" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libensembl.so.6 could be avoided if "debian/embassy-domsearch/usr/bin/seqnr debian/embassy-domsearch/usr/bin/seqfraggle debian/embassy-domsearch/usr/bin/seqwords debian/embassy-domsearch/usr/bin/seqsearch debian/embassy-domsearch/usr/bin/seqsort" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libepcre.so.7 could be avoided if "debian/embassy-domsearch/usr/bin/seqnr debian/embassy-domsearch/usr/bin/seqfraggle debian/embassy-domsearch/usr/bin/seqwords debian/embassy-domsearch/usr/bin/seqsearch debian/embassy-domsearch/usr/bin/seqsort" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-domsearch/usr/bin/seqnr debian/embassy-domsearch/usr/bin/seqfraggle debian/embassy-domsearch/usr/bin/seqwords debian/embassy-domsearch/usr/bin/seqsearch debian/embassy-domsearch/usr/bin/seqsort" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxdb.so.6 could be avoided if "debian/embassy-domsearch/usr/bin/seqnr debian/embassy-domsearch/usr/bin/seqfraggle debian/embassy-domsearch/usr/bin/seqwords debian/embassy-domsearch/usr/bin/seqsearch debian/embassy-domsearch/usr/bin/seqsort" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxg.so.6 could be avoided if "debian/embassy-domsearch/usr/bin/seqnr debian/embassy-domsearch/usr/bin/seqfraggle debian/embassy-domsearch/usr/bin/seqwords debian/embassy-domsearch/usr/bin/seqsearch debian/embassy-domsearch/usr/bin/seqsort" were not uselessly linked against it (they use none of its symbols). dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 116 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `embassy-domsearch' in `../embassy-domsearch_0.1.650-1ubuntu3_i386.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../embassy-domsearch_0.1.650-1ubuntu3_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build embassy-domsearch-0.1.650 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120828-1333 chroot-autobuild/build/buildd/embassy-domsearch_0.1.650-1ubuntu3_i386.deb: new debian package, version 2.0. size 128102 bytes: control archive= 1623 bytes. 999 bytes, 21 lines control 2131 bytes, 29 lines md5sums Package: embassy-domsearch Version: 1:0.1.650-1ubuntu3 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 607 Depends: emboss-lib (>= 6.5.7), libc6 (>= 2.0), libx11-6, emboss-lib (<< 6.6.0~) Recommends: emboss Suggests: embassy Section: science Priority: optional Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH Description: Extra EMBOSS commands to search for protein domains The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. . Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt). chroot-autobuild/build/buildd/embassy-domsearch_0.1.650-1ubuntu3_i386.deb: drwxr-xr-x root/root 0 2012-08-28 13:33 ./ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/doc/embassy-domsearch/ -rw-r--r-- root/root 1269 2012-08-24 14:14 ./usr/share/doc/embassy-domsearch/copyright -rw-r--r-- root/root 1371 2012-08-28 13:27 ./usr/share/doc/embassy-domsearch/changelog.Debian.gz drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/man/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/man/man1/ -rw-r--r-- root/root 1932 2012-08-28 13:33 ./usr/share/man/man1/seqsearch.1e.gz -rw-r--r-- root/root 2600 2012-08-28 13:33 ./usr/share/man/man1/seqnr.1e.gz -rw-r--r-- root/root 1457 2012-08-28 13:33 ./usr/share/man/man1/seqwords.1e.gz -rw-r--r-- root/root 1529 2012-08-28 13:33 ./usr/share/man/man1/seqfraggle.1e.gz -rw-r--r-- root/root 1863 2012-08-28 13:33 ./usr/share/man/man1/seqsort.1e.gz drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/acd/ -rw-r--r-- root/root 2977 2012-08-28 13:33 ./usr/share/EMBOSS/acd/seqfraggle.acd -rw-r--r-- root/root 5651 2012-08-28 13:33 ./usr/share/EMBOSS/acd/seqsort.acd -rw-r--r-- root/root 11054 2012-08-28 13:33 ./usr/share/EMBOSS/acd/seqnr.acd -rw-r--r-- root/root 4986 2012-08-28 13:33 ./usr/share/EMBOSS/acd/seqsearch.acd -rw-r--r-- root/root 2209 2012-08-28 13:33 ./usr/share/EMBOSS/acd/seqwords.acd drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/doc/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/ -rw-r--r-- root/root 40316 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/seqsort.html -rw-r--r-- root/root 69332 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/seqsearch.html -rw-r--r-- root/root 59617 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/seqfraggle.html -rw-r--r-- root/root 2022 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/index.html -rw-r--r-- root/root 26896 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/seqwords.html -rw-r--r-- root/root 76607 2012-08-28 13:33 ./usr/share/EMBOSS/doc/html/embassy/domsearch/seqnr.html drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/text/ -rw-r--r-- root/root 50537 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/text/seqnr.txt -rw-r--r-- root/root 11812 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/text/seqwords.txt -rw-r--r-- root/root 47405 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/text/seqsearch.txt -rw-r--r-- root/root 37950 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/text/seqfraggle.txt -rw-r--r-- root/root 16733 2012-08-28 13:33 ./usr/share/EMBOSS/doc/programs/text/seqsort.txt drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/lintian/ drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 183 2012-08-24 14:14 ./usr/share/lintian/overrides/embassy-domsearch drwxr-xr-x root/root 0 2012-08-28 13:33 ./usr/bin/ -rwxr-xr-x root/root 18032 2012-08-28 13:33 ./usr/bin/seqsearch -rwxr-xr-x root/root 13840 2012-08-28 13:33 ./usr/bin/seqsort -rwxr-xr-x root/root 9676 2012-08-28 13:33 ./usr/bin/seqwords -rwxr-xr-x root/root 13856 2012-08-28 13:33 ./usr/bin/seqnr -rwxr-xr-x root/root 9692 2012-08-28 13:33 ./usr/bin/seqfraggle embassy-domsearch_0.1.650-1ubuntu3_i386.changes: Format: 1.8 Date: Tue, 28 Aug 2012 14:27:33 +0100 Source: embassy-domsearch Binary: embassy-domsearch Architecture: i386 Version: 1:0.1.650-1ubuntu3 Distribution: precise Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Tim Booth Description: embassy-domsearch - Extra EMBOSS commands to search for protein domains Changes: embassy-domsearch (1:0.1.650-1ubuntu3) precise; urgency=low . * New upstream to match new upstream EMBOSS + Fix deps in control * Rebuild against EMBOSS 6.5.x * Rebuild against libgd2-noxpm-dev to yield a binary that works with either libgd2-xmp or libgd2-noxpm * Enable dh_autoreconf due to missing src/Makefile.in * Tried to work out dh_shlibdeps warnings - seem to be due to emboss-lib being badly built so the .so files don't link properly. Not fixed just now - it's an EMBOSS issue and a mess. Checksums-Sha1: a0212e607db5f4d6000d5de2a475589bdc5cc194 128102 embassy-domsearch_0.1.650-1ubuntu3_i386.deb Checksums-Sha256: ec32d2b1c7c6d896f498e317fa43f7d3a5a41b6e6379f773a45b29d347de505a 128102 embassy-domsearch_0.1.650-1ubuntu3_i386.deb Files: 1cb8727f39b5c024540df5ff3790ce24 128102 science optional embassy-domsearch_0.1.650-1ubuntu3_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120828-1333 Build needed 00:00:23, 5756k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '162c5ff44dec512ac5c24632eabd0468abfa7a5e'] Scanning for processes to kill in build /home/buildd/build-162c5ff44dec512ac5c24632eabd0468abfa7a5e/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '162c5ff44dec512ac5c24632eabd0468abfa7a5e'] Unmounting chroot for build 162c5ff44dec512ac5c24632eabd0468abfa7a5e... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '162c5ff44dec512ac5c24632eabd0468abfa7a5e'] Removing build 162c5ff44dec512ac5c24632eabd0468abfa7a5e