RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-21 3.13.0-32-generic #57-Ubuntu SMP Tue Jul 15 03:51:08 UTC 2014 x86_64 Buildd toolchain package versions: launchpad-buildd_125~0~123dynamic~ubuntu14.04.1~0.IS.14.04.2 python-lpbuildd_125~0~123dynamic~ubuntu14.04.1~0.IS.14.04.2 bzr-builder_0.7.3-0ubuntu1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.3. Syncing the system clock with the buildd NTP service... 29 Jul 01:01:57 ntpdate[1431]: adjust time server 10.211.37.1 offset 0.279629 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6219991', '/home/buildd/filecache-default/bcd5dc063ce51e1147d70d5a7a54c6f9cc3d3ea4'] Unpacking chroot for build PACKAGEBUILD-6219991 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6219991'] Mounting chroot for build PACKAGEBUILD-6219991 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6219991', 'deb http://ppa.launchpad.net/nschloe/netcdf-nightly/ubuntu trusty main', 'deb http://ppa.launchpad.net/costamagnagianfranco/autoconf/ubuntu trusty main', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-6219991 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6219991', 'amd64'] Updating debian chroot for build PACKAGEBUILD-6219991 Ign http://ppa.launchpad.net trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://ppa.launchpad.net trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Get:1 http://ppa.launchpad.net trusty Release.gpg [316 B] Ign http://ftpmaster.internal trusty-updates InRelease Get:2 http://ppa.launchpad.net trusty Release.gpg [316 B] Get:3 http://ftpmaster.internal trusty Release.gpg [933 B] Get:4 http://ppa.launchpad.net trusty Release [14.0 kB] Get:5 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:7 http://ftpmaster.internal trusty Release [58.5 kB] Ign http://ppa.launchpad.net trusty Release Get:8 http://ppa.launchpad.net trusty Release [14.0 kB] Ign http://ppa.launchpad.net trusty Release Get:9 http://ppa.launchpad.net trusty/main amd64 Packages [2863 B] Get:10 http://ftpmaster.internal trusty-security Release [58.5 kB] Get:11 http://ftpmaster.internal trusty-updates Release [58.5 kB] Get:12 http://ppa.launchpad.net trusty/main amd64 Packages [4025 B] Get:13 http://ftpmaster.internal trusty/main amd64 Packages [1350 kB] Ign http://ppa.launchpad.net trusty/main Translation-en Ign http://ppa.launchpad.net trusty/main Translation-en Get:14 http://ftpmaster.internal trusty/restricted amd64 Packages [13.0 kB] Get:15 http://ftpmaster.internal trusty/universe amd64 Packages [5859 kB] Get:16 http://ftpmaster.internal trusty/multiverse amd64 Packages [132 kB] Get:17 http://ftpmaster.internal trusty/main Translation-en [762 kB] Get:18 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:19 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:20 http://ftpmaster.internal trusty/universe Translation-en [4089 kB] Get:21 http://ftpmaster.internal trusty-security/main amd64 Packages [117 kB] Get:22 http://ftpmaster.internal trusty-security/restricted amd64 Packages [14 B] Get:23 http://ftpmaster.internal trusty-security/universe amd64 Packages [39.0 kB] Get:24 http://ftpmaster.internal trusty-security/multiverse amd64 Packages [1147 B] Get:25 http://ftpmaster.internal trusty-security/main Translation-en [56.2 kB] Get:26 http://ftpmaster.internal trusty-security/multiverse Translation-en [587 B] Get:27 http://ftpmaster.internal trusty-security/restricted Translation-en [14 B] Get:28 http://ftpmaster.internal trusty-security/universe Translation-en [22.1 kB] Get:29 http://ftpmaster.internal trusty-updates/main amd64 Packages [273 kB] Get:30 http://ftpmaster.internal trusty-updates/restricted amd64 Packages [14 B] Get:31 http://ftpmaster.internal trusty-updates/universe amd64 Packages [162 kB] Get:32 http://ftpmaster.internal trusty-updates/multiverse amd64 Packages [7392 B] Get:33 http://ftpmaster.internal trusty-updates/main Translation-en [116 kB] Get:34 http://ftpmaster.internal trusty-updates/multiverse Translation-en [3971 B] Get:35 http://ftpmaster.internal trusty-updates/restricted Translation-en [14 B] Get:36 http://ftpmaster.internal trusty-updates/universe Translation-en [79.4 kB] Fetched 13.4 MB in 4s (2749 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net trusty Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY ECD154D280FEB8AC W: GPG error: http://ppa.launchpad.net trusty Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 1BCB19E03C2A1859 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files bash bsdutils dpkg dpkg-dev gnupg gpgv ifupdown initramfs-tools initramfs-tools-bin libapt-pkg4.12 libblkid1 libcgmanager0 libdbus-1-3 libdpkg-perl libgnutls26 libjson-c2 libjson0 libmount1 libselinux1 libssl1.0.0 libtasn1-6 libudev1 libuuid1 linux-libc-dev mount openssl patch tzdata udev upstart util-linux 34 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 10.9 MB of archives. After this operation, 43.0 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty-updates/main base-files amd64 7.2ubuntu5.1 [70.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty-updates/main bash amd64 4.3-7ubuntu1 [575 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty-security/main dpkg amd64 1.17.5ubuntu5.3 [1954 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-updates/main mount amd64 2.20.1-5.1ubuntu20.1 [115 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-security/main tzdata all 2014e-0ubuntu0.14.04 [181 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty-updates/main util-linux amd64 2.20.1-5.1ubuntu20.1 [456 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty-security/main libapt-pkg4.12 amd64 1.0.1ubuntu2.1 [639 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty-security/main gpgv amd64 1.4.16-1ubuntu2.1 [160 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty-security/main gnupg amd64 1.4.16-1ubuntu2.1 [610 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty-security/main apt amd64 1.0.1ubuntu2.1 [952 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty-updates/main bsdutils amd64 1:2.20.1-5.1ubuntu20.1 [33.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty-updates/main libuuid1 amd64 2.20.1-5.1ubuntu20.1 [10.9 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty-updates/main libblkid1 amd64 2.20.1-5.1ubuntu20.1 [62.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty-updates/main libselinux1 amd64 2.2.2-1ubuntu0.1 [58.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty-updates/main libmount1 amd64 2.20.1-5.1ubuntu20.1 [60.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty-security/main libtasn1-6 amd64 3.4-3ubuntu0.1 [43.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty-security/main libgnutls26 amd64 2.12.23-12ubuntu2.1 [393 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty-security/main libssl1.0.0 amd64 1.0.1f-1ubuntu2.4 [826 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty-security/main libdbus-1-3 amd64 1.6.18-0ubuntu4.1 [131 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty-security/main libjson-c2 amd64 0.11-3ubuntu1.2 [22.0 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty-updates/main libcgmanager0 amd64 0.24-0ubuntu7 [29.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty-updates/main udev amd64 204-5ubuntu20.3 [735 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty-updates/main libudev1 amd64 204-5ubuntu20.3 [33.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty-updates/main ifupdown amd64 0.7.47.2ubuntu4.1 [52.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty-updates/main initramfs-tools all 0.103ubuntu4.2 [44.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty-updates/main initramfs-tools-bin amd64 0.103ubuntu4.2 [8922 B] Get:27 http://ftpmaster.internal/ubuntu/ trusty-security/main libjson0 amd64 0.11-3ubuntu1.2 [1080 B] Get:28 http://ftpmaster.internal/ubuntu/ trusty-updates/main upstart amd64 1.12.1-0ubuntu4.2 [390 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty-security/main apt-transport-https amd64 1.0.1ubuntu2.1 [25.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty-security/main openssl amd64 1.0.1f-1ubuntu2.4 [489 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty-security/main dpkg-dev all 1.17.5ubuntu5.3 [726 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty-security/main libdpkg-perl all 1.17.5ubuntu5.3 [179 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty-updates/main patch amd64 2.7.1-4ubuntu1 [84.4 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty-security/main linux-libc-dev amd64 3.13.0-32.57 [783 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.9 MB in 0s (12.9 MB/s) (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu5.1_amd64.deb ... Unpacking base-files (7.2ubuntu5.1) over (7.2ubuntu5) ... Setting up base-files (7.2ubuntu5.1) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu1_amd64.deb ... Unpacking bash (4.3-7ubuntu1) over (4.3-6ubuntu1) ... Setting up bash (4.3-7ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.5ubuntu5.3_amd64.deb ... Unpacking dpkg (1.17.5ubuntu5.3) over (1.17.5ubuntu5) ... Setting up dpkg (1.17.5ubuntu5.3) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../mount_2.20.1-5.1ubuntu20.1_amd64.deb ... Unpacking mount (2.20.1-5.1ubuntu20.1) over (2.20.1-5.1ubuntu20) ... Setting up mount (2.20.1-5.1ubuntu20.1) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../tzdata_2014e-0ubuntu0.14.04_all.deb ... Unpacking tzdata (2014e-0ubuntu0.14.04) over (2014b-1) ... Setting up tzdata (2014e-0ubuntu0.14.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jul 29 01:02:11 UTC 2014. Universal Time is now: Tue Jul 29 01:02:11 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../util-linux_2.20.1-5.1ubuntu20.1_amd64.deb ... Unpacking util-linux (2.20.1-5.1ubuntu20.1) over (2.20.1-5.1ubuntu20) ... Setting up util-linux (2.20.1-5.1ubuntu20.1) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.1ubuntu2.1_amd64.deb ... Unpacking libapt-pkg4.12:amd64 (1.0.1ubuntu2.1) over (1.0.1ubuntu2) ... Setting up libapt-pkg4.12:amd64 (1.0.1ubuntu2.1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../gpgv_1.4.16-1ubuntu2.1_amd64.deb ... Unpacking gpgv (1.4.16-1ubuntu2.1) over (1.4.16-1ubuntu2) ... Setting up gpgv (1.4.16-1ubuntu2.1) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../gnupg_1.4.16-1ubuntu2.1_amd64.deb ... Unpacking gnupg (1.4.16-1ubuntu2.1) over (1.4.16-1ubuntu2) ... Setting up gnupg (1.4.16-1ubuntu2.1) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../apt_1.0.1ubuntu2.1_amd64.deb ... Unpacking apt (1.0.1ubuntu2.1) over (1.0.1ubuntu2) ... Setting up apt (1.0.1ubuntu2.1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.20.1-5.1ubuntu20.1_amd64.deb ... Unpacking bsdutils (1:2.20.1-5.1ubuntu20.1) over (1:2.20.1-5.1ubuntu20) ... Setting up bsdutils (1:2.20.1-5.1ubuntu20.1) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libuuid1_2.20.1-5.1ubuntu20.1_amd64.deb ... Unpacking libuuid1:amd64 (2.20.1-5.1ubuntu20.1) over (2.20.1-5.1ubuntu20) ... Setting up libuuid1:amd64 (2.20.1-5.1ubuntu20.1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libblkid1_2.20.1-5.1ubuntu20.1_amd64.deb ... Unpacking libblkid1:amd64 (2.20.1-5.1ubuntu20.1) over (2.20.1-5.1ubuntu20) ... Setting up libblkid1:amd64 (2.20.1-5.1ubuntu20.1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libselinux1_2.2.2-1ubuntu0.1_amd64.deb ... Unpacking libselinux1:amd64 (2.2.2-1ubuntu0.1) over (2.2.2-1) ... Setting up libselinux1:amd64 (2.2.2-1ubuntu0.1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libmount1_2.20.1-5.1ubuntu20.1_amd64.deb ... Unpacking libmount1:amd64 (2.20.1-5.1ubuntu20.1) over (2.20.1-5.1ubuntu20) ... Setting up libmount1:amd64 (2.20.1-5.1ubuntu20.1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libtasn1-6_3.4-3ubuntu0.1_amd64.deb ... Unpacking libtasn1-6:amd64 (3.4-3ubuntu0.1) over (3.4-3) ... Preparing to unpack .../libgnutls26_2.12.23-12ubuntu2.1_amd64.deb ... Unpacking libgnutls26:amd64 (2.12.23-12ubuntu2.1) over (2.12.23-12ubuntu2) ... Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu2.4_amd64.deb ... Unpacking libssl1.0.0:amd64 (1.0.1f-1ubuntu2.4) over (1.0.1f-1ubuntu2) ... Preparing to unpack .../libdbus-1-3_1.6.18-0ubuntu4.1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.6.18-0ubuntu4.1) over (1.6.18-0ubuntu4) ... Preparing to unpack .../libjson-c2_0.11-3ubuntu1.2_amd64.deb ... Unpacking libjson-c2:amd64 (0.11-3ubuntu1.2) over (0.11-3ubuntu1) ... Preparing to unpack .../libcgmanager0_0.24-0ubuntu7_amd64.deb ... Unpacking libcgmanager0:amd64 (0.24-0ubuntu7) over (0.24-0ubuntu5) ... Preparing to unpack .../udev_204-5ubuntu20.3_amd64.deb ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking udev (204-5ubuntu20.3) over (204-5ubuntu20) ... Preparing to unpack .../libudev1_204-5ubuntu20.3_amd64.deb ... Unpacking libudev1:amd64 (204-5ubuntu20.3) over (204-5ubuntu20) ... Preparing to unpack .../ifupdown_0.7.47.2ubuntu4.1_amd64.deb ... Unpacking ifupdown (0.7.47.2ubuntu4.1) over (0.7.47.2ubuntu4) ... Preparing to unpack .../initramfs-tools_0.103ubuntu4.2_all.deb ... Unpacking initramfs-tools (0.103ubuntu4.2) over (0.103ubuntu4) ... Preparing to unpack .../initramfs-tools-bin_0.103ubuntu4.2_amd64.deb ... Unpacking initramfs-tools-bin (0.103ubuntu4.2) over (0.103ubuntu4) ... Preparing to unpack .../libjson0_0.11-3ubuntu1.2_amd64.deb ... Unpacking libjson0:amd64 (0.11-3ubuntu1.2) over (0.11-3ubuntu1) ... Preparing to unpack .../upstart_1.12.1-0ubuntu4.2_amd64.deb ... Unpacking upstart (1.12.1-0ubuntu4.2) over (1.12.1-0ubuntu4) ... Preparing to unpack .../apt-transport-https_1.0.1ubuntu2.1_amd64.deb ... Unpacking apt-transport-https (1.0.1ubuntu2.1) over (1.0.1ubuntu2) ... Preparing to unpack .../openssl_1.0.1f-1ubuntu2.4_amd64.deb ... Unpacking openssl (1.0.1f-1ubuntu2.4) over (1.0.1f-1ubuntu2) ... Preparing to unpack .../dpkg-dev_1.17.5ubuntu5.3_all.deb ... Unpacking dpkg-dev (1.17.5ubuntu5.3) over (1.17.5ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.17.5ubuntu5.3_all.deb ... Unpacking libdpkg-perl (1.17.5ubuntu5.3) over (1.17.5ubuntu5) ... Preparing to unpack .../patch_2.7.1-4ubuntu1_amd64.deb ... Unpacking patch (2.7.1-4ubuntu1) over (2.7.1-4) ... Preparing to unpack .../linux-libc-dev_3.13.0-32.57_amd64.deb ... Unpacking linux-libc-dev:amd64 (3.13.0-32.57) over (3.13.0-24.46) ... Setting up libtasn1-6:amd64 (3.4-3ubuntu0.1) ... Setting up libgnutls26:amd64 (2.12.23-12ubuntu2.1) ... Setting up libssl1.0.0:amd64 (1.0.1f-1ubuntu2.4) ... Setting up libdbus-1-3:amd64 (1.6.18-0ubuntu4.1) ... Setting up libjson-c2:amd64 (0.11-3ubuntu1.2) ... Setting up libcgmanager0:amd64 (0.24-0ubuntu7) ... Setting up libudev1:amd64 (204-5ubuntu20.3) ... Setting up udev (204-5ubuntu20.3) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.47.2ubuntu4.1) ... Installing new version of config file /etc/init/network-interface.conf ... Setting up initramfs-tools-bin (0.103ubuntu4.2) ... Setting up initramfs-tools (0.103ubuntu4.2) ... update-initramfs: deferring update (trigger activated) Setting up libjson0:amd64 (0.11-3ubuntu1.2) ... Setting up upstart (1.12.1-0ubuntu4.2) ... Installing new version of config file /etc/cron.daily/upstart ... Setting up apt-transport-https (1.0.1ubuntu2.1) ... Setting up openssl (1.0.1f-1ubuntu2.4) ... Setting up libdpkg-perl (1.17.5ubuntu5.3) ... Setting up patch (2.7.1-4ubuntu1) ... Setting up dpkg-dev (1.17.5ubuntu5.3) ... Setting up linux-libc-dev:amd64 (3.13.0-32.57) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu4.2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6219991', 'amd64', 'trusty', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty', '--purpose=PPA', '--architecture=amd64', '--comp=main', 'netcdff_4.4.0~20140729-trusty1.dsc'] Initiating build PACKAGEBUILD-6219991 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-32-generic #57-Ubuntu SMP Tue Jul 15 03:51:08 UTC 2014 x86_64 Automatic build of netcdff_4.4.0~20140729-trusty1 on lgw01-21 by sbuild/amd64 1.170.5 Build started at 20140729-0102 ****************************************************************************** netcdff_4.4.0~20140729-trusty1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), cmake, gfortran, libopenmpi-dev, libnetcdf-dev Checking for already installed source dependencies... debhelper: missing cmake: missing gfortran: missing libopenmpi-dev: missing libnetcdf-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cmake gfortran libopenmpi-dev libnetcdf-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data dh-apparmor file gettext gettext-base gfortran-4.8 groff-base intltool-debian libarchive13 libasprintf0c2 libcr0 libcroco3 libcurl3 libexpat1 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libhdf5-7 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 liblzo2-2 libmagic1 libnetcdf7 libnettle4 libnuma1 libopenmpi1.6 libpci-dev libpci3 libpipeline1 libtorque2 libunistring0 libxml2 libxml2-dev man-db openmpi-common po-debconf zlib1g-dev Suggested packages: wamerican wordlist whois vacation codeblocks eclipse dh-make apparmor-easyprof gettext-doc gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg groff lrzip blcr-dkms libhwloc-contrib-plugins netcdf-bin netcdf-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhwloc-plugins pkg-config xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dh-apparmor file gettext gettext-base gfortran gfortran-4.8 groff-base intltool-debian libarchive13 libasprintf0c2 libcr0 libcroco3 libcurl3 libexpat1 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libhdf5-7 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 liblzo2-2 libmagic1 libnetcdf-dev libnetcdf7 libnettle4 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libtorque2 libunistring0 libxml2 libxml2-dev man-db openmpi-common po-debconf zlib1g-dev 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 20.0 MB of archives. After this operation, 81.5 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libnetcdf7 libnetcdf-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 amd64 2.1.0-4ubuntu1 [71.1 kB] Get:2 http://ppa.launchpad.net/nschloe/netcdf-nightly/ubuntu/ trusty/main libnetcdf7 amd64 1:4.3.3~20140725-trusty1 [242 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty-security/main libmagic1 amd64 1:5.14-2ubuntu3.1 [184 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-updates/main libasprintf0c2 amd64 0.18.3.1-1ubuntu3 [6712 B] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 amd64 2.40.0-2 [1057 kB] Get:6 http://ppa.launchpad.net/nschloe/netcdf-nightly/ubuntu/ trusty/main libnetcdf-dev amd64 1:4.3.3~20140725-trusty1 [29.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libnuma1 amd64 2.0.9~rc5-1ubuntu2 [20.3 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libpci3 amd64 1:3.2.1-1ubuntu5 [26.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 amd64 1.3.0-1 [24.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty-security/main libxml2 amd64 2.9.1+dfsg1-3ubuntu4.3 [571 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main groff-base amd64 1.22.2-5 [1053 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main man-db amd64 2.6.7.1-1 [858 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty-security/main liblzo2-2 amd64 2.06-1.2ubuntu1.1 [46.1 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libnettle4 amd64 2.7.1-1 [121 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libarchive13 amd64 3.1.2-7ubuntu2 [259 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 amd64 0.6.8-2ubuntu1 [82.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libcurl3 amd64 7.35.0-1ubuntu2 [172 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran3 amd64 4.8.2-19ubuntu1 [250 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/universe libhdf5-7 amd64 1.8.11-5ubuntu7 [1205 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libltdl7 amd64 2.4.2-1.7ubuntu1 [35.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/universe libhwloc5 amd64 1.8-1ubuntu1 [77.9 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty-security/main file amd64 1:5.14-2ubuntu3.1 [18.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty-updates/main gettext-base amd64 0.18.3.1-1ubuntu3 [48.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main cmake-data all 2.8.12.2-0ubuntu3 [676 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main cmake amd64 2.8.12.2-0ubuntu3 [2618 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty-updates/main gettext amd64 0.18.3.1-1ubuntu3 [829 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131227ubuntu1 [604 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran-4.8-dev amd64 4.8.2-19ubuntu1 [269 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main gfortran-4.8 amd64 4.8.2-19ubuntu1 [4728 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main gfortran amd64 4:4.8.2-1ubuntu6 [1252 B] Get:36 http://ftpmaster.internal/ubuntu/ trusty/universe libcr0 amd64 0.8.5-2.1 [18.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1 [183 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libpci-dev amd64 1:3.2.1-1ubuntu5 [43.9 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/universe libtorque2 amd64 2.4.16+dfsg-1.3ubuntu1 [76.3 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty-security/main libxml2-dev amd64 2.9.1+dfsg1-3ubuntu4.3 [630 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/universe openmpi-common all 1.6.5-8 [101 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/universe libhwloc-dev amd64 1.8-1ubuntu1 [130 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libibverbs1 amd64 1.1.7-1ubuntu1 [23.3 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libibverbs-dev amd64 1.1.7-1ubuntu1 [68.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/universe libopenmpi1.6 amd64 1.6.5-8 [1396 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/universe libopenmpi-dev amd64 1.6.5-8 [379 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.0 MB in 1s (10.1 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11788 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu3.1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.14-2ubuntu3.1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.18.3.1-1ubuntu3_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.18.3.1-1ubuntu3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.40.0-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.40.0-2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../libnuma1_2.0.9~rc5-1ubuntu2_amd64.deb ... Unpacking libnuma1:amd64 (2.0.9~rc5-1ubuntu2) ... Selecting previously unselected package libpci3:amd64. Preparing to unpack .../libpci3_1%3a3.2.1-1ubuntu5_amd64.deb ... Unpacking libpci3:amd64 (1:3.2.1-1ubuntu5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.3.0-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu4.3_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3ubuntu4.3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-5_amd64.deb ... Unpacking groff-base (1.22.2-5) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_amd64.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package liblzo2-2:amd64. 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Selecting previously unselected package libhdf5-7:amd64. Preparing to unpack .../libhdf5-7_1.8.11-5ubuntu7_amd64.deb ... Unpacking libhdf5-7:amd64 (1.8.11-5ubuntu7) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../libltdl7_2.4.2-1.7ubuntu1_amd64.deb ... Unpacking libltdl7:amd64 (2.4.2-1.7ubuntu1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5ubuntu3) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../libhwloc5_1.8-1ubuntu1_amd64.deb ... Unpacking libhwloc5:amd64 (1.8-1ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.14-2ubuntu3.1_amd64.deb ... Unpacking file (1:5.14-2ubuntu3.1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.1-1ubuntu3_amd64.deb ... Unpacking gettext-base (0.18.3.1-1ubuntu3) ... 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Preparing to unpack .../openmpi-common_1.6.5-8_all.deb ... Unpacking openmpi-common (1.6.5-8) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../libhwloc-dev_1.8-1ubuntu1_amd64.deb ... Unpacking libhwloc-dev:amd64 (1.8-1ubuntu1) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.1.7-1ubuntu1_amd64.deb ... Unpacking libibverbs1 (1.1.7-1ubuntu1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../libibverbs-dev_1.1.7-1ubuntu1_amd64.deb ... Unpacking libibverbs-dev (1.1.7-1ubuntu1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-8_amd64.deb ... Unpacking libopenmpi1.6 (1.6.5-8) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../libopenmpi-dev_1.6.5-8_amd64.deb ... Unpacking libopenmpi-dev (1.6.5-8) ... Setting up libexpat1:amd64 (2.1.0-4ubuntu1) ... Setting up libmagic1:amd64 (1:5.14-2ubuntu3.1) ... Setting up libasprintf0c2:amd64 (0.18.3.1-1ubuntu3) ... Setting up libglib2.0-0:amd64 (2.40.0-2) ... No schema files found: doing nothing. Setting up libnuma1:amd64 (2.0.9~rc5-1ubuntu2) ... Setting up libpci3:amd64 (1:3.2.1-1ubuntu5) ... Setting up libpipeline1:amd64 (1.3.0-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu4.3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up liblzo2-2:amd64 (2.06-1.2ubuntu1.1) ... Setting up libnettle4:amd64 (2.7.1-1) ... Setting up libarchive13:amd64 (3.1.2-7ubuntu2) ... Setting up libcroco3:amd64 (0.6.8-2ubuntu1) ... Setting up libcurl3:amd64 (7.35.0-1ubuntu2) ... Setting up libgfortran3:amd64 (4.8.2-19ubuntu1) ... Setting up libhdf5-7:amd64 (1.8.11-5ubuntu7) ... Setting up libltdl7:amd64 (2.4.2-1.7ubuntu1) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu3) ... Setting up libhwloc5:amd64 (1.8-1ubuntu1) ... Setting up file (1:5.14-2ubuntu3.1) ... Setting up gettext-base (0.18.3.1-1ubuntu3) ... Setting up cmake-data (2.8.12.2-0ubuntu3) ... Setting up cmake (2.8.12.2-0ubuntu3) ... Setting up gettext (0.18.3.1-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20131227ubuntu1) ... Setting up libgfortran-4.8-dev:amd64 (4.8.2-19ubuntu1) ... Setting up gfortran-4.8 (4.8.2-19ubuntu1) ... Setting up gfortran (4:4.8.2-1ubuntu6) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libcr0 (0.8.5-2.1) ... Setting up libnetcdf7 (1:4.3.3~20140725-trusty1) ... Setting up libnetcdf-dev (1:4.3.3~20140725-trusty1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpci-dev (1:3.2.1-1ubuntu5) ... Setting up libtorque2 (2.4.16+dfsg-1.3ubuntu1) ... Setting up libxml2-dev:amd64 (2.9.1+dfsg1-3ubuntu4.3) ... Setting up openmpi-common (1.6.5-8) ... Setting up libhwloc-dev:amd64 (1.8-1ubuntu1) ... Setting up libibverbs1 (1.1.7-1ubuntu1) ... Setting up libibverbs-dev (1.1.7-1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-8) ... Setting up libopenmpi-dev (1.6.5-8) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Processing triggers for libc-bin (2.19-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu5.3 gcc-4.8_4.8.2-19ubuntu1 g++-4.8_4.8.2-19ubuntu1 binutils_2.24-5ubuntu3 libstdc++-4.8-dev_4.8.2-19ubuntu1 libstdc++6_4.8.2-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Tue Jul 29 01:00:09 2014 UTC using RSA key ID F12676D6 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./netcdff_4.4.0~20140729-trusty1.dsc dpkg-source: info: extracting netcdff in netcdff-4.4.0~20140729 dpkg-source: info: unpacking netcdff_4.4.0~20140729.orig.tar.gz dpkg-source: info: unpacking netcdff_4.4.0~20140729-trusty1.debian.tar.gz dpkg-buildpackage: source package netcdff dpkg-buildpackage: source version 4.4.0~20140729-trusty1 dpkg-buildpackage: source distribution trusty dpkg-source --before-build netcdff-4.4.0~20140729 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean rm -f debian/libnetcdff.substvars rm -f debian/libnetcdff.*.debhelper rm -rf debian/libnetcdff/ rm -f debian/libnetcdff-dev.substvars rm -f debian/libnetcdff-dev.*.debhelper rm -rf debian/libnetcdff-dev/ rm -f debian/libnetcdff-dbg.substvars rm -f debian/libnetcdff-dbg.*.debhelper rm -rf debian/libnetcdff-dbg/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a mkdir -p obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -- The Fortran compiler identification is GNU -- The C compiler identification is GNU 4.8.2 -- Check for working Fortran compiler: /usr/bin/x86_64-linux-gnu-gfortran -- Check for working Fortran compiler: /usr/bin/x86_64-linux-gnu-gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/x86_64-linux-gnu-gfortran supports Fortran 90 -- Checking whether /usr/bin/x86_64-linux-gnu-gfortran supports Fortran 90 -- yes -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found netcdf: /usr/lib/x86_64-linux-gnu/libnetcdf.so CMake Error at /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:108 (message): Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) Call Stack (most recent call first): /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:315 (_FPHSA_FAILURE_MESSAGE) /usr/share/cmake-2.8/Modules/FindHDF5.cmake:347 (find_package_handle_standard_args) CMakeLists.txt:597 (FIND_PACKAGE) -- Configuring incomplete, errors occurred! See also "/build/buildd/netcdff-4.4.0~20140729/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log". dh_auto_configure: cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None returned exit code 1 make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 ****************************************************************************** Build finished at 20140729-0102 FAILED [dpkg-buildpackage died] ****************************************************************************** Finished at 20140729-0102 Build needed 00:00:02, 6336k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6219991'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6219991/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6219991'] Unmounting chroot for build PACKAGEBUILD-6219991... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6219991'] Removing build PACKAGEBUILD-6219991