bowtie 1.2.2+dfsg-2 source package in Ubuntu
Changelog
bowtie (1.2.2+dfsg-2) unstable; urgency=medium
* Update d/tests/run-unit-test
- export BOWTIE_INDEXES, Closes: #888844
- enable test for example9
* Bump Standards-Version to 4.1.3 (No changes needed),
set debhelper & d/compat to version 11
-- Alexandre Mestiashvili <email address hidden> Wed, 31 Jan 2018 14:04:41 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64 alpha arm64 mips64el ppc64 ppc64el s390x sparc64 all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Bionic | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| bowtie_1.2.2+dfsg-2.dsc | 2.3 KiB | fbd7d0b2d70164f28211e51bd95ce6c843ff944a419ea326b762f380ea6ba194 |
| bowtie_1.2.2+dfsg.orig.tar.xz | 6.4 MiB | c088d301b60d27e4201c705c9cbb899fe1bc270c87c37dd2017ee73bb2e4807f |
| bowtie_1.2.2+dfsg-2.debian.tar.xz | 19.1 KiB | 6c7d69c3469bf7bd6154a72f3219d05b20564c4d39e254ea054302591fc28094 |
Available diffs
- diff from 1.2.1.1+dfsg-1 to 1.2.2+dfsg-2 (50.9 KiB)
- diff from 1.2.2+dfsg-1 to 1.2.2+dfsg-2 (944 bytes)
No changes file available.
Binary packages built by this source
- bowtie: Ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the
latest (2010) DNA sequencing technologies. Those will yield fairly
short stretches and those cannot be interpreted directly. It is the
challenge for tools like Bowtie to give a chromosomal location to the
short stretches of DNA sequenced per run.
.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate
of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
a Burrows-Wheeler index to keep its memory footprint small: typically
about 2.2 GB for the human genome (2.9 GB for paired-end).
- bowtie-dbgsym: debug symbols for bowtie
- bowtie-examples: Examples for bowtie, the ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the
latest (2010) DNA sequencing technologies. Those will yield fairly
short stretches and those cannot be interpreted directly. It is the
challenge for tools like Bowtie to give a chromosomal location to the
short stretches of DNA sequenced per run.
.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate
of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
a Burrows-Wheeler index to keep its memory footprint small: typically
about 2.2 GB for the human genome (2.9 GB for paired-end).
.
This package provides some example data to work with bowtie.
