Ubuntu
epcr package

epcr 2.3.12-1-5 source package in Ubuntu

Changelog

epcr (2.3.12-1-5) unstable; urgency=medium

  * Moved packaging from SVN to Git
  * Add upstream note that epcr is retired
  * Reflect in watch file that there will be no new versions
  * Add note about retired program to long description
  * Standards-Version: 4.1.0 (no changes needed)

 -- Andreas Tille <email address hidden>  Wed, 27 Sep 2017 13:04:14 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe science

Downloads

File Size SHA-256 Checksum
epcr_2.3.12-1-5.dsc 1.9 KiB 5d5b39b94bbe070a14838c51acced2ad31e1f604297eefb2f9ecbcef55c09295
epcr_2.3.12-1.orig.tar.gz 75.0 KiB 92613a09cbba3eab66916488063b56e2a3b50a82e5308b1731b6b90d232b8275
epcr_2.3.12-1-5.debian.tar.xz 8.5 KiB cb6585bb649b899644894b11a25d1a2115ff79f1fb6cd45cc43d7088ee1b96f7

Available diffs

No changes file available.

Binary packages built by this source

ncbi-epcr: Tool to test a DNA sequence for the presence of sequence tagged sites

 Electronic PCR (e-PCR) is computational procedure that is used to identify
 sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential
 STSs in DNA sequences by searching for subsequences that closely match the
 PCR primers and have the correct order, orientation, and spacing that could
 represent the PCR primers used to generate known STSs.
 .
 The new version of e-PCR implements a fuzzy matching strategy. To reduce
 likelihood that a true STS will be missed due to mismatches, multiple
 discontiguous words may be used instead of a single exact word. Each of this
 word has groups of significant positions separated by 'wildcard' positions
 that are not required to match. In addition, it is also possible to allow
 gaps in the primer alignments.
 .
 The main motivation for implementing reverse searching (called Reverse e-PCR)
 was to make it feasible to search the human genome sequence and other large
 genomes. The new version of e-PCR provides a search mode using a query
 sequence against a sequence database.
 .
 This program is retired upstream and it is suggested to use Primer-Blast
  https://www.ncbi.nlm.nih.gov/tools/primer-blast/
 instead.

ncbi-epcr-dbgsym: No summary available for ncbi-epcr-dbgsym in ubuntu cosmic.

No description available for ncbi-epcr-dbgsym in ubuntu cosmic.