jellyfish 2.3.0-4build1 source package in Ubuntu
Changelog
jellyfish (2.3.0-4build1) focal; urgency=medium * No-change rebuild to drop python3.7. -- Matthias Klose <email address hidden> Tue, 18 Feb 2020 10:20:06 +0100
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Focal
- Original maintainer:
- Debian Med
- Architectures:
- amd64
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| jellyfish_2.3.0.orig.tar.gz | 663.2 KiB | 29ead991de90151dbe4a2717f7ac30b3852296c9cbdda8b001121a1f2fa714db |
| jellyfish_2.3.0-4build1.debian.tar.xz | 12.6 KiB | 040e31fd4ce2b9fdfa6bcaca7c1141cf67f47625a6d7ae8a08a388a99c935088 |
| jellyfish_2.3.0-4build1.dsc | 2.6 KiB | 42ce688ccb5ed7f7cd4f04e243a45a4dd5df8eac495219f221f273bf6d69e41c |
Available diffs
- diff from 2.3.0-4 (in Debian) to 2.3.0-4build1 (341 bytes)
Binary packages built by this source
- jellyfish: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
- jellyfish-dbgsym: debug symbols for jellyfish
- jellyfish-examples: No summary available for jellyfish-examples in ubuntu groovy.
No description available for jellyfish-examples in ubuntu groovy.
- jellyfish-examples-dbgsym: debug symbols for jellyfish-examples
- libjellyfish-2.0-2: No summary available for libjellyfish-2.0-2 in ubuntu groovy.
No description available for libjellyfish-2.0-2 in ubuntu groovy.
- libjellyfish-2.0-2-dbgsym: No summary available for libjellyfish-2.0-2-dbgsym in ubuntu groovy.
No description available for libjellyfish-
2.0-2-dbgsym in ubuntu groovy.
- libjellyfish-2.0-dev: count k-mers in DNA sequences (development files of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
.
This package contains the development files (static library and
header files)
- libjellyfish-perl: No summary available for libjellyfish-perl in ubuntu groovy.
No description available for libjellyfish-perl in ubuntu groovy.
- libjellyfish-perl-dbgsym: debug symbols for libjellyfish-perl
- python3-dna-jellyfish: No summary available for python3-dna-jellyfish in ubuntu groovy.
No description available for python3-
dna-jellyfish in ubuntu groovy.
- python3-dna-jellyfish-dbgsym: debug symbols for python3-dna-jellyfish
