maffilter 1.3.1+dfsg-1build1 source package in Ubuntu
Changelog
maffilter (1.3.1+dfsg-1build1) focal; urgency=medium * No change rebuild against new boost1.71 ABI -- Dimitri John Ledkov <email address hidden> Mon, 03 Feb 2020 21:01:52 +0000
Upload details
- Uploaded by:
- Dimitri John Ledkov
- Uploaded to:
- Focal
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| maffilter_1.3.1+dfsg.orig.tar.xz | 75.0 MiB | 1767aae6061ca7d12682f7ded1e1b9f6ecad3d03fcfa02ff24b5351d51d8dc70 |
| maffilter_1.3.1+dfsg-1build1.debian.tar.xz | 3.5 KiB | 4ccb0587761ce909dcba34540514214db330319d9b691486c4f7972e965c3f3a |
| maffilter_1.3.1+dfsg-1build1.dsc | 2.2 KiB | 0b9f4b45f04d83dc6825a2731f7886c06564c12f4bd8f5a043a46c04e4e33805 |
Available diffs
Binary packages built by this source
- maffilter: process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
- maffilter-dbgsym: debug symbols for maffilter
- maffilter-examples: No summary available for maffilter-examples in ubuntu groovy.
No description available for maffilter-examples in ubuntu groovy.
